Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420650 | XP_013461152.1 | 94.553 | 257 | 14 | 0 | 1 | 257 | 1 | 257 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420650 | A0A072V0F2 | 94.553 | 257 | 14 | 0 | 1 | 257 | 1 | 257 | 0.0 | 516 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022750 | Msa0420650 | 0.815192 | 1.048343e-51 | -8.615850e-47 |
| Msa0035120 | Msa0420650 | -0.801716 | 7.897356e-49 | -8.615850e-47 |
| Msa0042550 | Msa0420650 | -0.801132 | 1.039921e-48 | -8.615850e-47 |
| Msa0055070 | Msa0420650 | -0.827671 | 1.375415e-54 | -8.615850e-47 |
| Msa0056450 | Msa0420650 | -0.823579 | 1.283780e-53 | -8.615850e-47 |
| Msa0080830 | Msa0420650 | -0.800251 | 1.573586e-48 | -8.615850e-47 |
| Msa0101020 | Msa0420650 | -0.827825 | 1.263311e-54 | -8.615850e-47 |
| Msa0103250 | Msa0420650 | -0.805938 | 1.048379e-49 | -8.615850e-47 |
| Msa0104800 | Msa0420650 | -0.800893 | 1.163925e-48 | -8.615850e-47 |
| Msa0106620 | Msa0420650 | -0.807478 | 4.956434e-50 | -8.615850e-47 |
| Msa0106710 | Msa0420650 | -0.810147 | 1.331937e-50 | -8.615850e-47 |
| Msa0119320 | Msa0420650 | -0.818971 | 1.483803e-52 | -8.615850e-47 |
| Msa0138210 | Msa0420650 | -0.826074 | 3.311622e-54 | -8.615850e-47 |
| Msa0145110 | Msa0420650 | -0.820565 | 6.413202e-53 | -8.615850e-47 |
| Msa0158130 | Msa0420650 | 0.834184 | 3.471538e-56 | -8.615850e-47 |
| Msa0172000 | Msa0420650 | -0.811848 | 5.702381e-51 | -8.615850e-47 |
| Msa0174390 | Msa0420650 | -0.801628 | 8.231723e-49 | -8.615850e-47 |
| Msa0178510 | Msa0420650 | -0.820253 | 7.561344e-53 | -8.615850e-47 |
| Msa0183420 | Msa0420650 | -0.805245 | 1.465055e-49 | -8.615850e-47 |
| Msa0187030 | Msa0420650 | -0.817012 | 4.111109e-52 | -8.615850e-47 |
| Msa0187830 | Msa0420650 | -0.841504 | 4.566293e-58 | -8.615850e-47 |
| Msa0188150 | Msa0420650 | -0.800565 | 1.358066e-48 | -8.615850e-47 |
| Msa0193540 | Msa0420650 | -0.822639 | 2.126614e-53 | -8.615850e-47 |
| Msa0207350 | Msa0420650 | -0.807516 | 4.866026e-50 | -8.615850e-47 |
| Msa0220730 | Msa0420650 | -0.832734 | 7.982558e-56 | -8.615850e-47 |
| Msa0235470 | Msa0420650 | -0.806344 | 8.608214e-50 | -8.615850e-47 |
| Msa0236700 | Msa0420650 | 0.801759 | 7.737776e-49 | -8.615850e-47 |
| Msa0377440 | Msa0420650 | -0.805020 | 1.633182e-49 | -8.615850e-47 |
| Msa0384260 | Msa0420650 | 0.814906 | 1.213279e-51 | -8.615850e-47 |
| Msa0389910 | Msa0420650 | -0.820094 | 8.223784e-53 | -8.615850e-47 |
| Msa0394140 | Msa0420650 | -0.828409 | 9.137656e-55 | -8.615850e-47 |
| Msa0394260 | Msa0420650 | -0.800184 | 1.623418e-48 | -8.615850e-47 |
| Msa0397820 | Msa0420650 | -0.809266 | 2.059505e-50 | -8.615850e-47 |
| Msa0398200 | Msa0420650 | -0.803202 | 3.900670e-49 | -8.615850e-47 |
| Msa0410300 | Msa0420650 | -0.817645 | 2.962446e-52 | -8.615850e-47 |
| Msa0420590 | Msa0420650 | 0.997440 | 1.461579e-242 | -8.615850e-47 |
| Msa0420650 | Msa0422180 | -0.838408 | 2.927575e-57 | -8.615850e-47 |
| Msa0420650 | Msa0429090 | -0.814621 | 1.403809e-51 | -8.615850e-47 |
| Msa0420650 | Msa0443430 | -0.801162 | 1.025509e-48 | -8.615850e-47 |
| Msa0420650 | Msa0455740 | -0.820392 | 7.027838e-53 | -8.615850e-47 |
| Msa0420650 | Msa0461590 | -0.820364 | 7.133753e-53 | -8.615850e-47 |
| Msa0420650 | Msa0467100 | -0.801636 | 8.201689e-49 | -8.615850e-47 |
| Msa0420650 | Msa0514610 | -0.809759 | 1.614334e-50 | -8.615850e-47 |
| Msa0420650 | Msa0517090 | -0.844427 | 7.610594e-59 | -8.615850e-47 |
| Msa0420650 | Msa0518960 | -0.816727 | 4.764253e-52 | -8.615850e-47 |
| Msa0420650 | Msa0521670 | -0.804313 | 2.293525e-49 | -8.615850e-47 |
| Msa0420650 | Msa0525610 | -0.805079 | 1.587085e-49 | -8.615850e-47 |
| Msa0420650 | Msa0526070 | 0.811236 | 7.743195e-51 | -8.615850e-47 |
| Msa0420650 | Msa0554380 | 0.821710 | 3.493536e-53 | -8.615850e-47 |
| Msa0420650 | Msa0557050 | -0.810734 | 9.949932e-51 | -8.615850e-47 |
| Msa0420650 | Msa0574760 | 0.819467 | 1.143893e-52 | -8.615850e-47 |
| Msa0420650 | Msa0579660 | -0.805912 | 1.061386e-49 | -8.615850e-47 |
| Msa0420650 | Msa0613460 | -0.800458 | 1.428036e-48 | -8.615850e-47 |
| Msa0420650 | Msa0615220 | -0.812898 | 3.361920e-51 | -8.615850e-47 |
| Msa0420650 | Msa0620910 | -0.801219 | 9.981008e-49 | -8.615850e-47 |
| Msa0420650 | Msa0622170 | 0.802259 | 6.107199e-49 | -8.615850e-47 |
| Msa0420650 | Msa0638360 | -0.802476 | 5.510916e-49 | -8.615850e-47 |
| Msa0420650 | Msa0640500 | -0.804588 | 2.010174e-49 | -8.615850e-47 |
| Msa0420650 | Msa0641730 | -0.815610 | 8.464378e-52 | -8.615850e-47 |
| Msa0420650 | Msa0648240 | 0.801775 | 7.678129e-49 | -8.615850e-47 |
| Msa0420650 | Msa0661320 | -0.833679 | 4.644119e-56 | -8.615850e-47 |
| Msa0420650 | Msa0689760 | -0.822545 | 2.236940e-53 | -8.615850e-47 |
| Msa0420650 | Msa0698440 | -0.805824 | 1.107450e-49 | -8.615850e-47 |
| Msa0420650 | Msa0705190 | -0.826660 | 2.401690e-54 | -8.615850e-47 |
| Msa0420650 | Msa0705990 | -0.809694 | 1.667226e-50 | -8.615850e-47 |
| Msa0420650 | Msa0709160 | -0.818056 | 2.392227e-52 | -8.615850e-47 |
| Msa0420650 | Msa0716860 | -0.816170 | 6.349506e-52 | -8.615850e-47 |
| Msa0420650 | Msa0721280 | -0.806750 | 7.070113e-50 | -8.615850e-47 |
| Msa0420650 | Msa0721340 | -0.808891 | 2.478067e-50 | -8.615850e-47 |
| Msa0420650 | Msa0747720 | 0.803819 | 2.905298e-49 | -8.615850e-47 |
| Msa0420650 | Msa0750250 | -0.824384 | 8.311421e-54 | -8.615850e-47 |
| Msa0420650 | Msa0757450 | 0.803727 | 3.035857e-49 | -8.615850e-47 |
| Msa0420650 | Msa0788110 | -0.803098 | 4.099842e-49 | -8.615850e-47 |
| Msa0420650 | Msa0795070 | -0.806575 | 7.695782e-50 | -8.615850e-47 |
| Msa0420650 | Msa0821800 | -0.806712 | 7.198944e-50 | -8.615850e-47 |
| Msa0420650 | Msa0849110 | 0.815774 | 7.780573e-52 | -8.615850e-47 |
| Msa0420650 | Msa0857300 | -0.811673 | 6.222891e-51 | -8.615850e-47 |
| Msa0420650 | Msa0861830 | -0.800680 | 1.286693e-48 | -8.615850e-47 |
| Msa0420650 | Msa0868160 | -0.829393 | 5.279660e-55 | -8.615850e-47 |
| Msa0420650 | Msa0873860 | -0.802900 | 4.504455e-49 | -8.615850e-47 |
| Msa0420650 | Msa0879080 | -0.803490 | 3.400913e-49 | -8.615850e-47 |
| Msa0420650 | Msa0880040 | -0.810031 | 1.410744e-50 | -8.615850e-47 |
| Msa0420650 | Msa0902830 | -0.808804 | 2.586423e-50 | -8.615850e-47 |
| Msa0420650 | Msa0930910 | 0.820263 | 7.523398e-53 | -8.615850e-47 |
| Msa0420650 | Msa0936390 | -0.821146 | 4.715408e-53 | -8.615850e-47 |
| Msa0420650 | Msa1008750 | -0.801720 | 7.881864e-49 | -8.615850e-47 |
| Msa0420650 | Msa1010070 | -0.801819 | 7.519718e-49 | -8.615850e-47 |
| Msa0420650 | Msa1034280 | -0.824344 | 8.491142e-54 | -8.615850e-47 |
| Msa0420650 | Msa1036410 | -0.804714 | 1.892281e-49 | -8.615850e-47 |
| Msa0420650 | Msa1038080 | -0.811852 | 5.689500e-51 | -8.615850e-47 |
| Msa0420650 | Msa1039710 | 0.810768 | 9.781673e-51 | -8.615850e-47 |
| Msa0420650 | Msa1050700 | -0.810594 | 1.066381e-50 | -8.615850e-47 |
| Msa0420650 | Msa1050740 | -0.849470 | 3.168614e-60 | -8.615850e-47 |
| Msa0420650 | Msa1054150 | 0.811080 | 8.371102e-51 | -8.615850e-47 |
| Msa0420650 | Msa1063420 | -0.826799 | 2.224466e-54 | -8.615850e-47 |
| Msa0420650 | Msa1080960 | -0.816395 | 5.653589e-52 | -8.615850e-47 |
| Msa0420650 | Msa1098250 | -0.821943 | 3.085589e-53 | -8.615850e-47 |
| Msa0420650 | Msa1098270 | -0.822653 | 2.110773e-53 | -8.615850e-47 |
| Msa0420650 | Msa1110090 | -0.816453 | 5.488297e-52 | -8.615850e-47 |
| Msa0420650 | Msa1115280 | -0.819954 | 8.854181e-53 | -8.615850e-47 |
| Msa0420650 | Msa1127430 | -0.803474 | 3.426048e-49 | -8.615850e-47 |
| Msa0420650 | Msa1129690 | -0.802343 | 5.868755e-49 | -8.615850e-47 |
| Msa0420650 | Msa1137570 | -0.804078 | 2.566920e-49 | -8.615850e-47 |
| Msa0420650 | Msa1143020 | -0.835306 | 1.812089e-56 | -8.615850e-47 |
| Msa0420650 | Msa1196540 | 0.803377 | 3.588309e-49 | -8.615850e-47 |
| Msa0420650 | Msa1204100 | 0.833457 | 5.275196e-56 | -8.615850e-47 |
| Msa0420650 | Msa1225100 | -0.800811 | 1.209619e-48 | -8.615850e-47 |
| Msa0420650 | Msa1244750 | 0.829638 | 4.601606e-55 | -8.615850e-47 |
| Msa0420650 | Msa1250730 | -0.801363 | 9.327877e-49 | -8.615850e-47 |
| Msa0420650 | Msa1263290 | 0.823210 | 1.565806e-53 | -8.615850e-47 |
| Msa0420650 | Msa1286550 | -0.802928 | 4.445466e-49 | -8.615850e-47 |
| Msa0420650 | Msa1296460 | 0.825399 | 4.788295e-54 | -8.615850e-47 |
| Msa0420650 | Msa1329050 | 0.838301 | 3.119662e-57 | -8.615850e-47 |
| Msa0420650 | Msa1332050 | -0.809180 | 2.149337e-50 | -8.615850e-47 |
| Msa0420650 | Msa1341490 | -0.800872 | 1.175289e-48 | -8.615850e-47 |
| Msa0420650 | Msa1352540 | 0.830016 | 3.722905e-55 | -8.615850e-47 |
| Msa0420650 | Msa1357890 | -0.805404 | 1.356772e-49 | -8.615850e-47 |
| Msa0420650 | Msa1359920 | -0.813482 | 2.503215e-51 | -8.615850e-47 |
| Msa0420650 | Msa1365600 | -0.806700 | 7.243435e-50 | -8.615850e-47 |
| Msa0420650 | Msa1372150 | -0.804184 | 2.439494e-49 | -8.615850e-47 |
| Msa0420650 | Msa1393840 | 0.809585 | 1.759332e-50 | -8.615850e-47 |
| Msa0420650 | Msa1398090 | -0.802007 | 6.880875e-49 | -8.615850e-47 |
| Msa0420650 | Msa1407970 | -0.800391 | 1.473198e-48 | -8.615850e-47 |
| Msa0420650 | Msa1408620 | 0.822180 | 2.719353e-53 | -8.615850e-47 |
| Msa0420650 | Msa1410420 | -0.809688 | 1.672384e-50 | -8.615850e-47 |
| Msa0420650 | Msa1412070 | -0.803259 | 3.796782e-49 | -8.615850e-47 |
| Msa0420650 | Msa1416370 | -0.802985 | 4.325325e-49 | -8.615850e-47 |
| Msa0420650 | Msa1420250 | -0.825359 | 4.894628e-54 | -8.615850e-47 |
| Msa0420650 | Msa1422840 | -0.809764 | 1.610503e-50 | -8.615850e-47 |
| Msa0420650 | Msa1422910 | -0.802457 | 5.560542e-49 | -8.615850e-47 |
| Msa0420650 | Msa1424630 | -0.820116 | 8.131480e-53 | -8.615850e-47 |
| Msa0420650 | Msa1432630 | -0.807516 | 4.865228e-50 | -8.615850e-47 |
| Msa0420650 | Msa1439710 | -0.806471 | 8.096827e-50 | -8.615850e-47 |
| Msa0420650 | Msa1446780 | -0.807696 | 4.455666e-50 | -8.615850e-47 |
| Msa0420650 | Msa1454530 | -0.811666 | 6.245053e-51 | -8.615850e-47 |
| Msa0420650 | Msa1454960 | -0.804895 | 1.734418e-49 | -8.615850e-47 |
| Msa0420650 | Msa1456230 | -0.807987 | 3.864704e-50 | -8.615850e-47 |
| Msa0420650 | Msa1457160 | -0.811946 | 5.428013e-51 | -8.615850e-47 |
| Msa0420650 | Msa1458340 | -0.802073 | 6.670969e-49 | -8.615850e-47 |
| Msa0241190 | Msa0420650 | -0.824829 | 6.527423e-54 | -8.615850e-47 |
| Msa0274630 | Msa0420650 | -0.810848 | 9.396630e-51 | -8.615850e-47 |
| Msa0277420 | Msa0420650 | -0.808515 | 2.982537e-50 | -8.615850e-47 |
| Msa0279170 | Msa0420650 | -0.801139 | 1.036517e-48 | -8.615850e-47 |
| Msa0296980 | Msa0420650 | 0.844865 | 5.800738e-59 | -8.615850e-47 |
| Msa0314060 | Msa0420650 | -0.819983 | 8.718400e-53 | -8.615850e-47 |
| Msa0328070 | Msa0420650 | -0.817207 | 3.716427e-52 | -8.615850e-47 |
| Msa0340690 | Msa0420650 | -0.816501 | 5.353402e-52 | -8.615850e-47 |
| Msa0347950 | Msa0420650 | -0.813029 | 3.148115e-51 | -8.615850e-47 |
| Msa0347990 | Msa0420650 | -0.817811 | 2.717401e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420650 | MtrunA17_Chr3g0120251 | 94.553 | 257 | 14 | 0 | 1 | 257 | 1 | 257 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420650 | AT4G32960.1 | 66.383 | 235 | 76 | 2 | 11 | 245 | 16 | 247 | 1.47e-118 | 340 |
| Msa0420650 | AT4G32970.1 | 57.917 | 240 | 90 | 5 | 1 | 240 | 8 | 236 | 1.24e-90 | 281 |
Find 73 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTCTGATTCCGTTTCT+TGG | 0.172090 | 3_2:+69250748 | Msa0420650:CDS |
| GAAGAGTATGTCTTCATTAT+TGG | 0.175234 | 3_2:-69250562 | None:intergenic |
| ACCTTCTTCACAAGTGATTT+AGG | 0.250650 | 3_2:-69253144 | None:intergenic |
| AGCATTAACAAAGAGAATTA+TGG | 0.272594 | 3_2:-69250685 | None:intergenic |
| GGTTACTGATTTAATGTGTT+TGG | 0.275338 | 3_2:+69253256 | Msa0420650:three_prime_UTR |
| TTCCATCCAGCCAGTGAAAA+TGG | 0.304306 | 3_2:+69253202 | Msa0420650:exon |
| TAAAGATACACATCATTTAC+AGG | 0.317655 | 3_2:-69253342 | None:intergenic |
| CATCAAAAGTGAAGAGCTTC+TGG | 0.319023 | 3_2:-69252918 | None:intergenic |
| TTAGTTCTCCTATCTCATTT+AGG | 0.323830 | 3_2:+69253235 | Msa0420650:three_prime_UTR |
| TGCAGCAATGCGAGGACTTT+CGG | 0.328713 | 3_2:+69252584 | Msa0420650:CDS |
| TGAATATGAGGGTTATATCT+TGG | 0.373630 | 3_2:+69253026 | Msa0420650:CDS |
| TGAATATGTTACTGAATATG+AGG | 0.373834 | 3_2:+69253014 | Msa0420650:CDS |
| CCAGTGAATCATAGATCTCT+TGG | 0.376722 | 3_2:-69252981 | None:intergenic |
| TCTCTCTGATTCCGTTTCTT+GGG | 0.386328 | 3_2:+69250749 | Msa0420650:CDS |
| TTGTTAAAATGTGCATCATT+CGG | 0.406960 | 3_2:-69250337 | None:intergenic |
| AGCTAAGAAATCCCGTATGC+AGG | 0.439303 | 3_2:+69252665 | Msa0420650:CDS |
| CTGCGATTCTTCTTGATTAG+CGG | 0.451997 | 3_2:-69250463 | None:intergenic |
| CAGTGAATCATAGATCTCTT+GGG | 0.452851 | 3_2:-69252980 | None:intergenic |
| ATCAGTAACCTAAATGAGAT+AGG | 0.457440 | 3_2:-69253243 | None:intergenic |
| ACCTAAATCACTTGTGAAGA+AGG | 0.463492 | 3_2:+69253143 | Msa0420650:CDS |
| GAAGAAGAAAACGAGCGAAA+TGG | 0.465041 | 3_2:+69250491 | Msa0420650:exon |
| TTCATCTCCGCCATGGATTG+TGG | 0.467873 | 3_2:-69250600 | None:intergenic |
| CATTATTGGTTCGTGAAGGT+TGG | 0.471952 | 3_2:-69250548 | None:intergenic |
| TTAAAATGCGACCCTGCATA+CGG | 0.480619 | 3_2:-69252677 | None:intergenic |
| AGCGAAATGGAAGGGGTTGA+AGG | 0.485605 | 3_2:+69250504 | Msa0420650:exon |
| TTCACAGGCCACTGATGTCG+TGG | 0.489353 | 3_2:-69252895 | None:intergenic |
| ACGAGTGAAGGGTCTTCCAT+TGG | 0.502333 | 3_2:-69250643 | None:intergenic |
| CGAGTGAAGGGTCTTCCATT+GGG | 0.506995 | 3_2:-69250642 | None:intergenic |
| CGGAACAAAGTAGTAAGGTC+TGG | 0.516465 | 3_2:-69252627 | None:intergenic |
| GAAACGATGTTGAGGATTGA+TGG | 0.517981 | 3_2:-69250715 | None:intergenic |
| CCAAGAGATCTATGATTCAC+TGG | 0.521036 | 3_2:+69252981 | Msa0420650:CDS |
| GTGAAGAGCTTCTGGTTCAC+AGG | 0.521567 | 3_2:-69252910 | None:intergenic |
| AGCACCTTTCATCTCCGCCA+TGG | 0.528589 | 3_2:-69250607 | None:intergenic |
| TCTTCCATTGGGTCTACCAC+TGG | 0.536430 | 3_2:-69250631 | None:intergenic |
| ATGTATCTTCATGACAAGCC+TGG | 0.542728 | 3_2:+69252943 | Msa0420650:CDS |
| ACTTGTGAAGAAGGTTCCTC+AGG | 0.543838 | 3_2:+69253152 | Msa0420650:CDS |
| GGAATGAATTACCCAAGAAA+CGG | 0.545802 | 3_2:-69250760 | None:intergenic |
| ACATTATCTTCAGTGAGCAT+TGG | 0.548047 | 3_2:-69253180 | None:intergenic |
| TATATCTTGGAGAGTGGACA+AGG | 0.548282 | 3_2:+69253039 | Msa0420650:CDS |
| CAATCCATGGCGGAGATGAA+AGG | 0.552540 | 3_2:+69250603 | Msa0420650:CDS |
| CGATTCTTCTTGATTAGCGG+TGG | 0.553013 | 3_2:-69250460 | None:intergenic |
| GCTAAGAAATCCCGTATGCA+GGG | 0.556402 | 3_2:+69252666 | Msa0420650:CDS |
| CGACATTGATCCACAATCCA+TGG | 0.559837 | 3_2:+69250590 | Msa0420650:CDS |
| CAAGTCGGAACAAAGTAGTA+AGG | 0.561898 | 3_2:-69252632 | None:intergenic |
| TCTTCATTATTGGTTCGTGA+AGG | 0.562987 | 3_2:-69250552 | None:intergenic |
| TCTTGTGCGCAGCGCTGCTG+AGG | 0.567603 | 3_2:-69253108 | None:intergenic |
| AGAGTGGACAAGGGTTAGCA+AGG | 0.570938 | 3_2:+69253049 | Msa0420650:CDS |
| GAATATGTTACTGAATATGA+GGG | 0.572839 | 3_2:+69253015 | Msa0420650:CDS |
| TATTTGACAAGTATATGCTC+TGG | 0.573327 | 3_2:+69253313 | Msa0420650:three_prime_UTR |
| AAGAAAACGAGCGAAATGGA+AGG | 0.579481 | 3_2:+69250495 | Msa0420650:exon |
| TAAAATGCGACCCTGCATAC+GGG | 0.579986 | 3_2:-69252676 | None:intergenic |
| ACAATAGAATTAACACATGA+CGG | 0.580826 | 3_2:-69253080 | None:intergenic |
| AATTGCGTCTAAACGAGTGA+AGG | 0.582630 | 3_2:-69250655 | None:intergenic |
| AGAAAACGAGCGAAATGGAA+GGG | 0.583932 | 3_2:+69250496 | Msa0420650:exon |
| GTGAGCATTGGCTCTGCCTG+AGG | 0.592291 | 3_2:-69253168 | None:intergenic |
| TCACAGGCCACTGATGTCGT+GGG | 0.598113 | 3_2:-69252894 | None:intergenic |
| AGTGAATCATAGATCTCTTG+GGG | 0.598535 | 3_2:-69252979 | None:intergenic |
| TATGTATGAGAAAGATGAGA+GGG | 0.598547 | 3_2:-69250435 | None:intergenic |
| GAGGGTTATATCTTGGAGAG+TGG | 0.604921 | 3_2:+69253033 | Msa0420650:CDS |
| ATTGCGTCTAAACGAGTGAA+GGG | 0.614173 | 3_2:-69250654 | None:intergenic |
| GCTACCAGTGGTAGACCCAA+TGG | 0.614445 | 3_2:+69250627 | Msa0420650:CDS |
| GAAAACGAGCGAAATGGAAG+GGG | 0.619026 | 3_2:+69250497 | Msa0420650:exon |
| GAGTGGACAAGGGTTAGCAA+GGG | 0.627060 | 3_2:+69253050 | Msa0420650:CDS |
| CAGTGCGCCCACGACATCAG+TGG | 0.628456 | 3_2:+69252887 | Msa0420650:CDS |
| TAGCTTCGTGAGCAGCAAGT+CGG | 0.631405 | 3_2:-69252647 | None:intergenic |
| TCAACAATTGCAGCAATGCG+AGG | 0.635647 | 3_2:+69252576 | Msa0420650:CDS |
| GCGAAAGCGAAACGATGTTG+AGG | 0.644421 | 3_2:-69250723 | None:intergenic |
| AGAGATCTATGATTCACTGG+TGG | 0.652124 | 3_2:+69252984 | Msa0420650:CDS |
| GAGATGAAAGGTGCTACCAG+TGG | 0.673059 | 3_2:+69250615 | Msa0420650:CDS |
| TTATGTATGAGAAAGATGAG+AGG | 0.706346 | 3_2:-69250436 | None:intergenic |
| ATATCTTGGAGAGTGGACAA+GGG | 0.726324 | 3_2:+69253040 | Msa0420650:CDS |
| GTGAATCATAGATCTCTTGG+GGG | 0.736312 | 3_2:-69252978 | None:intergenic |
| CATTGATCCACAATCCATGG+CGG | 0.766885 | 3_2:+69250593 | Msa0420650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTATTTTATTTTTT+TGG | + | chr3_2:69251472-69251491 | Msa0420650:intron | 0.0% |
| !!! | ATTGAATTTTTTTTAGAAAG+AGG | - | chr3_2:69250784-69250803 | None:intergenic | 15.0% |
| !! | AAAATTCAATTAAGATTACA+AGG | + | chr3_2:69251207-69251226 | Msa0420650:intron | 15.0% |
| !! | AACAATTGAAAATGAATATT+TGG | - | chr3_2:69251773-69251792 | None:intergenic | 15.0% |
| !!! | TATGCTTTAAAAATATGAAT+AGG | - | chr3_2:69252338-69252357 | None:intergenic | 15.0% |
| !!! | TTTTAGTAGTTAGTCAAAAT+TGG | + | chr3_2:69250862-69250881 | Msa0420650:intron | 20.0% |
| !! | TGAAAATTGTTAATAGTGTA+TGG | + | chr3_2:69251031-69251050 | Msa0420650:intron | 20.0% |
| !!! | AGCTATATTGTTTTCTTATA+GGG | - | chr3_2:69251430-69251449 | None:intergenic | 20.0% |
| !!! | AAGCTATATTGTTTTCTTAT+AGG | - | chr3_2:69251431-69251450 | None:intergenic | 20.0% |
| !! | TTAATCCAAATCATTAGTAA+TGG | - | chr3_2:69252204-69252223 | None:intergenic | 20.0% |
| !!! | TACTAATGATTTGGATTAAA+TGG | + | chr3_2:69252205-69252224 | Msa0420650:intron | 20.0% |
| !! | TAAATACAAACCATTTAATC+CGG | - | chr3_2:69252218-69252237 | None:intergenic | 20.0% |
| !!! | AGTAGTATAAATGTTTTTTC+AGG | + | chr3_2:69252412-69252431 | Msa0420650:intron | 20.0% |
| !!! | GTAGTATAAATGTTTTTTCA+GGG | + | chr3_2:69252413-69252432 | Msa0420650:intron | 20.0% |
| !! | CTTAAATTGCAAAAATATCT+TGG | + | chr3_2:69253282-69253301 | Msa0420650:three_prime_UTR | 20.0% |
| ! | TTGTTAAAATGTGCATCATT+CGG | - | chr3_2:69250340-69250359 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTTCATCTTCGA+GGG | - | chr3_2:69250386-69250405 | None:intergenic | 25.0% |
| ! | AGCATTAACAAAGAGAATTA+TGG | - | chr3_2:69250688-69250707 | None:intergenic | 25.0% |
| ! | TTGAGTTTATATGATGAGAT+AGG | + | chr3_2:69250929-69250948 | Msa0420650:intron | 25.0% |
| ! | AATTATGACATTTCCATAAG+CGG | + | chr3_2:69250970-69250989 | Msa0420650:intron | 25.0% |
| ! | AATTAGTAGATAGCTTATAG+CGG | + | chr3_2:69251081-69251100 | Msa0420650:intron | 25.0% |
| ! | GGTATAATTGAGATAAAATC+TGG | + | chr3_2:69251228-69251247 | Msa0420650:intron | 25.0% |
| ! | ATTTGATATTTCTTCTGAAC+AGG | + | chr3_2:69251606-69251625 | Msa0420650:intron | 25.0% |
| ! | TTTGATATTTCTTCTGAACA+GGG | + | chr3_2:69251607-69251626 | Msa0420650:intron | 25.0% |
| ! | TACAATAAAACAAGACAATG+AGG | - | chr3_2:69251670-69251689 | None:intergenic | 25.0% |
| ! | ATTTGGAAGAAAACGATTTA+AGG | - | chr3_2:69251756-69251775 | None:intergenic | 25.0% |
| ! | TATCCATTTGATATGGTAAA+TGG | + | chr3_2:69251809-69251828 | Msa0420650:intron | 25.0% |
| ! | ATCCATTTGATATGGTAAAT+GGG | + | chr3_2:69251810-69251829 | Msa0420650:intron | 25.0% |
| ! | ATATTACACTCCTTTACTAA+AGG | + | chr3_2:69251964-69251983 | Msa0420650:intron | 25.0% |
| ! | TCAAACCATTACTAATGATT+TGG | + | chr3_2:69252196-69252215 | Msa0420650:intron | 25.0% |
| !!! | AAACACTTCATTTTTGAAAC+AGG | + | chr3_2:69252463-69252482 | Msa0420650:intron | 25.0% |
| !!! | AACACTTCATTTTTGAAACA+GGG | + | chr3_2:69252464-69252483 | Msa0420650:intron | 25.0% |
| ! | TTAAACAAACCAAGAAAGAT+GGG | - | chr3_2:69252748-69252767 | None:intergenic | 25.0% |
| ! | TTTAAACAAACCAAGAAAGA+TGG | - | chr3_2:69252749-69252768 | None:intergenic | 25.0% |
| ! | TGAATATGTTACTGAATATG+AGG | + | chr3_2:69253014-69253033 | Msa0420650:CDS | 25.0% |
| ! | GAATATGTTACTGAATATGA+GGG | + | chr3_2:69253015-69253034 | Msa0420650:CDS | 25.0% |
| ! | ACAATAGAATTAACACATGA+CGG | - | chr3_2:69253083-69253102 | None:intergenic | 25.0% |
| ! | TAAAGATACACATCATTTAC+AGG | - | chr3_2:69253345-69253364 | None:intergenic | 25.0% |
| !! | GAATGATGCACATTTTAACA+AGG | + | chr3_2:69250339-69250358 | Msa0420650:five_prime_UTR | 30.0% |
| !!! | TTTAGTTTTTCATCTTCGAG+GGG | - | chr3_2:69250385-69250404 | None:intergenic | 30.0% |
| !!! | GTTTTAGTTTTTCATCTTCG+AGG | - | chr3_2:69250387-69250406 | None:intergenic | 30.0% |
| TATGTATGAGAAAGATGAGA+GGG | - | chr3_2:69250438-69250457 | None:intergenic | 30.0% | |
| TTATGTATGAGAAAGATGAG+AGG | - | chr3_2:69250439-69250458 | None:intergenic | 30.0% | |
| ! | GAAGAGTATGTCTTCATTAT+TGG | - | chr3_2:69250565-69250584 | None:intergenic | 30.0% |
| ! | TCTTGCATGCAATTTGAAAT+TGG | + | chr3_2:69250823-69250842 | Msa0420650:intron | 30.0% |
| AAACATGCCATAATCTTTGA+GGG | - | chr3_2:69250897-69250916 | None:intergenic | 30.0% | |
| GTCTTATAAGTTCATTTGAC+TGG | - | chr3_2:69251356-69251375 | None:intergenic | 30.0% | |
| CAAATGAAAGAACATGAACT+AGG | - | chr3_2:69251591-69251610 | None:intergenic | 30.0% | |
| AGAAAACGATTTAAGGAAAG+AGG | - | chr3_2:69251749-69251768 | None:intergenic | 30.0% | |
| AAGCAGTTATCCATTTGATA+TGG | + | chr3_2:69251802-69251821 | Msa0420650:intron | 30.0% | |
| ATCCCATTTACCATATCAAA+TGG | - | chr3_2:69251815-69251834 | None:intergenic | 30.0% | |
| AGAAATTCATGAAAGATCCA+AGG | - | chr3_2:69251933-69251952 | None:intergenic | 30.0% | |
| !! | ACGTACAAATCTTTTAGGAA+AGG | - | chr3_2:69251997-69252016 | None:intergenic | 30.0% |
| TTCCTAAAAGATTTGTACGT+AGG | + | chr3_2:69251997-69252016 | Msa0420650:intron | 30.0% | |
| ! | TTCCTACGTACAAATCTTTT+AGG | - | chr3_2:69252002-69252021 | None:intergenic | 30.0% |
| AAATGATAGAATCTCGTTGT+AGG | + | chr3_2:69252063-69252082 | Msa0420650:intron | 30.0% | |
| AGATAGCACATCAAATTTGA+AGG | - | chr3_2:69252369-69252388 | None:intergenic | 30.0% | |
| TCAAATTTGATGTGCTATCT+AGG | + | chr3_2:69252369-69252388 | Msa0420650:intron | 30.0% | |
| TAAGATCCATATCCAACATT+GGG | - | chr3_2:69252442-69252461 | None:intergenic | 30.0% | |
| TAAACAAACCAAGAAAGATG+GGG | - | chr3_2:69252747-69252766 | None:intergenic | 30.0% | |
| TGAATATGAGGGTTATATCT+TGG | + | chr3_2:69253026-69253045 | Msa0420650:CDS | 30.0% | |
| ! | TTAGTTCTCCTATCTCATTT+AGG | + | chr3_2:69253235-69253254 | Msa0420650:three_prime_UTR | 30.0% |
| ATCAGTAACCTAAATGAGAT+AGG | - | chr3_2:69253246-69253265 | None:intergenic | 30.0% | |
| !! | GGTTACTGATTTAATGTGTT+TGG | + | chr3_2:69253256-69253275 | Msa0420650:three_prime_UTR | 30.0% |
| TATTTGACAAGTATATGCTC+TGG | + | chr3_2:69253313-69253332 | Msa0420650:three_prime_UTR | 30.0% | |
| !! | TCTTCATTATTGGTTCGTGA+AGG | - | chr3_2:69250555-69250574 | None:intergenic | 35.0% |
| GGAATGAATTACCCAAGAAA+CGG | - | chr3_2:69250763-69250782 | None:intergenic | 35.0% | |
| GCTTAATCCCTCAAAGATTA+TGG | + | chr3_2:69250887-69250906 | Msa0420650:intron | 35.0% | |
| CAAACATGCCATAATCTTTG+AGG | - | chr3_2:69250898-69250917 | None:intergenic | 35.0% | |
| CTCAAAGATTATGGCATGTT+TGG | + | chr3_2:69250896-69250915 | Msa0420650:intron | 35.0% | |
| AATAAGCTGAAAACCGCTTA+TGG | - | chr3_2:69250986-69251005 | None:intergenic | 35.0% | |
| AGAAACTGACAGTTACCAAA+TGG | + | chr3_2:69251323-69251342 | Msa0420650:intron | 35.0% | |
| GAAACTGACAGTTACCAAAT+GGG | + | chr3_2:69251324-69251343 | Msa0420650:intron | 35.0% | |
| TTGACTGGAAAAAACCCATT+TGG | - | chr3_2:69251341-69251360 | None:intergenic | 35.0% | |
| ! | GTTTTCTTATAGGGTCTGTT+TGG | - | chr3_2:69251421-69251440 | None:intergenic | 35.0% |
| GTTAAATCCCTCAAAGATCA+TGG | - | chr3_2:69251561-69251580 | None:intergenic | 35.0% | |
| TGAAAGAACATGAACTAGGT+AGG | - | chr3_2:69251587-69251606 | None:intergenic | 35.0% | |
| AAGACAATGAGGTCTGTAAT+GGG | - | chr3_2:69251659-69251678 | None:intergenic | 35.0% | |
| GATAAACCGATACTAAATGC+AGG | - | chr3_2:69251841-69251860 | None:intergenic | 35.0% | |
| TAAAAGAGGGTCAGTTTCTT+GGG | - | chr3_2:69251903-69251922 | None:intergenic | 35.0% | |
| ATAAAAGAGGGTCAGTTTCT+TGG | - | chr3_2:69251904-69251923 | None:intergenic | 35.0% | |
| CCAAGGACAACAATAAAAGA+GGG | - | chr3_2:69251916-69251935 | None:intergenic | 35.0% | |
| TCCAAGGACAACAATAAAAG+AGG | - | chr3_2:69251917-69251936 | None:intergenic | 35.0% | |
| TACACTCCTTTACTAAAGGA+AGG | + | chr3_2:69251968-69251987 | Msa0420650:intron | 35.0% | |
| ACACTCCTTTACTAAAGGAA+GGG | + | chr3_2:69251969-69251988 | Msa0420650:intron | 35.0% | |
| GGAACGATTACTTTCCTAAA+AGG | + | chr3_2:69252018-69252037 | Msa0420650:intron | 35.0% | |
| ACGATTACTTTCCTAAAAGG+TGG | + | chr3_2:69252021-69252040 | Msa0420650:intron | 35.0% | |
| CGATTACTTTCCTAAAAGGT+GGG | + | chr3_2:69252022-69252041 | Msa0420650:intron | 35.0% | |
| ATGTAGTGTTTCTTCCTCAT+TGG | - | chr3_2:69252125-69252144 | None:intergenic | 35.0% | |
| AAAACCAATGGTTAGAGGTA+GGG | + | chr3_2:69252151-69252170 | Msa0420650:intron | 35.0% | |
| ! | ACATTGTGTCATTGTGTTTC+CGG | + | chr3_2:69252256-69252275 | Msa0420650:intron | 35.0% |
| CATTGTGTTTCCGGATTAAA+TGG | + | chr3_2:69252265-69252284 | Msa0420650:intron | 35.0% | |
| GTAAGATCCATATCCAACAT+TGG | - | chr3_2:69252443-69252462 | None:intergenic | 35.0% | |
| GTGATTTGACAAATCACTGA+TGG | - | chr3_2:69252725-69252744 | None:intergenic | 35.0% | |
| AGTGAATCATAGATCTCTTG+GGG | - | chr3_2:69252982-69253001 | None:intergenic | 35.0% | |
| CAGTGAATCATAGATCTCTT+GGG | - | chr3_2:69252983-69253002 | None:intergenic | 35.0% | |
| ACCTAAATCACTTGTGAAGA+AGG | + | chr3_2:69253143-69253162 | Msa0420650:CDS | 35.0% | |
| ACCTTCTTCACAAGTGATTT+AGG | - | chr3_2:69253147-69253166 | None:intergenic | 35.0% | |
| ACATTATCTTCAGTGAGCAT+TGG | - | chr3_2:69253183-69253202 | None:intergenic | 35.0% | |
| !!! | TTACACAATGCCATTTTCAC+TGG | - | chr3_2:69253215-69253234 | None:intergenic | 35.0% |
| CTGCGATTCTTCTTGATTAG+CGG | - | chr3_2:69250466-69250485 | None:intergenic | 40.0% | |
| GAAGAAGAAAACGAGCGAAA+TGG | + | chr3_2:69250491-69250510 | Msa0420650:exon | 40.0% | |
| AAGAAAACGAGCGAAATGGA+AGG | + | chr3_2:69250495-69250514 | Msa0420650:exon | 40.0% | |
| AGAAAACGAGCGAAATGGAA+GGG | + | chr3_2:69250496-69250515 | Msa0420650:exon | 40.0% | |
| !! | CATTATTGGTTCGTGAAGGT+TGG | - | chr3_2:69250551-69250570 | None:intergenic | 40.0% |
| ATTGCGTCTAAACGAGTGAA+GGG | - | chr3_2:69250657-69250676 | None:intergenic | 40.0% | |
| AATTGCGTCTAAACGAGTGA+AGG | - | chr3_2:69250658-69250677 | None:intergenic | 40.0% | |
| GAAACGATGTTGAGGATTGA+TGG | - | chr3_2:69250718-69250737 | None:intergenic | 40.0% | |
| TCTCTCTGATTCCGTTTCTT+GGG | + | chr3_2:69250749-69250768 | Msa0420650:CDS | 40.0% | |
| AAACACGACCATGATCTTTG+AGG | + | chr3_2:69251550-69251569 | Msa0420650:intron | 40.0% | |
| AACACGACCATGATCTTTGA+GGG | + | chr3_2:69251551-69251570 | Msa0420650:intron | 40.0% | |
| CAAGACAATGAGGTCTGTAA+TGG | - | chr3_2:69251660-69251679 | None:intergenic | 40.0% | |
| GATCTGCCTGCATTTAGTAT+CGG | + | chr3_2:69251832-69251851 | Msa0420650:intron | 40.0% | |
| ! | CCCTCTTTTATTGTTGTCCT+TGG | + | chr3_2:69251913-69251932 | Msa0420650:intron | 40.0% |
| TACTTTCCTAAAAGGTGGGA+TGG | + | chr3_2:69252026-69252045 | Msa0420650:intron | 40.0% | |
| ! | ATAATGCCATCCCACCTTTT+AGG | - | chr3_2:69252035-69252054 | None:intergenic | 40.0% |
| GAATCTCGTTGTAGGTGATT+TGG | + | chr3_2:69252071-69252090 | Msa0420650:intron | 40.0% | |
| ! | GTAGGTGATTTGGATATGTG+CGG | + | chr3_2:69252081-69252100 | Msa0420650:intron | 40.0% |
| !! | GTTTTGTTGAGTCACCAATG+AGG | + | chr3_2:69252108-69252127 | Msa0420650:intron | 40.0% |
| AGGAAGAAACACTACATGCA+GGG | + | chr3_2:69252128-69252147 | Msa0420650:intron | 40.0% | |
| GAAAACCAATGGTTAGAGGT+AGG | + | chr3_2:69252150-69252169 | Msa0420650:intron | 40.0% | |
| AAACCAATGGTTAGAGGTAG+GGG | + | chr3_2:69252152-69252171 | Msa0420650:intron | 40.0% | |
| TTGATGTGCTATCTAGGCAT+CGG | + | chr3_2:69252375-69252394 | Msa0420650:intron | 40.0% | |
| !! | TTTTCAGGGTTTCCCAATGT+TGG | + | chr3_2:69252427-69252446 | Msa0420650:intron | 40.0% |
| CAAGTCGGAACAAAGTAGTA+AGG | - | chr3_2:69252635-69252654 | None:intergenic | 40.0% | |
| TTAAAATGCGACCCTGCATA+CGG | - | chr3_2:69252680-69252699 | None:intergenic | 40.0% | |
| !! | ATTTTAAGAGTGGTGAGTGG+TGG | + | chr3_2:69252693-69252712 | Msa0420650:intron | 40.0% |
| TCAAATCACCCCATCTTTCT+TGG | + | chr3_2:69252736-69252755 | Msa0420650:intron | 40.0% | |
| CATCAAAAGTGAAGAGCTTC+TGG | - | chr3_2:69252921-69252940 | None:intergenic | 40.0% | |
| ATGTATCTTCATGACAAGCC+TGG | + | chr3_2:69252943-69252962 | Msa0420650:CDS | 40.0% | |
| GTGAATCATAGATCTCTTGG+GGG | - | chr3_2:69252981-69253000 | None:intergenic | 40.0% | |
| CCAGTGAATCATAGATCTCT+TGG | - | chr3_2:69252984-69253003 | None:intergenic | 40.0% | |
| CCAAGAGATCTATGATTCAC+TGG | + | chr3_2:69252981-69253000 | Msa0420650:CDS | 40.0% | |
| AGAGATCTATGATTCACTGG+TGG | + | chr3_2:69252984-69253003 | Msa0420650:CDS | 40.0% | |
| TATATCTTGGAGAGTGGACA+AGG | + | chr3_2:69253039-69253058 | Msa0420650:CDS | 40.0% | |
| ATATCTTGGAGAGTGGACAA+GGG | + | chr3_2:69253040-69253059 | Msa0420650:CDS | 40.0% | |
| CGATTCTTCTTGATTAGCGG+TGG | - | chr3_2:69250463-69250482 | None:intergenic | 45.0% | |
| GAAAACGAGCGAAATGGAAG+GGG | + | chr3_2:69250497-69250516 | Msa0420650:exon | 45.0% | |
| CGACATTGATCCACAATCCA+TGG | + | chr3_2:69250590-69250609 | Msa0420650:CDS | 45.0% | |
| CATTGATCCACAATCCATGG+CGG | + | chr3_2:69250593-69250612 | Msa0420650:CDS | 45.0% | |
| CTCTCTCTGATTCCGTTTCT+TGG | + | chr3_2:69250748-69250767 | Msa0420650:CDS | 45.0% | |
| AGGCACCCTTCCTTTAGTAA+AGG | - | chr3_2:69251977-69251996 | None:intergenic | 45.0% | |
| AAGGTGGGATGGCATTATTG+TGG | + | chr3_2:69252037-69252056 | Msa0420650:intron | 45.0% | |
| GAGGAAGAAACACTACATGC+AGG | + | chr3_2:69252127-69252146 | Msa0420650:intron | 45.0% | |
| CTACATGCAGGGAAAACCAA+TGG | + | chr3_2:69252139-69252158 | Msa0420650:intron | 45.0% | |
| CAGGGAAAACCAATGGTTAG+AGG | + | chr3_2:69252146-69252165 | Msa0420650:intron | 45.0% | |
| AACCAATGGTTAGAGGTAGG+GGG | + | chr3_2:69252153-69252172 | Msa0420650:intron | 45.0% | |
| GGGTTTCCCAATGTTGGATA+TGG | + | chr3_2:69252433-69252452 | Msa0420650:intron | 45.0% | |
| TCAACAATTGCAGCAATGCG+AGG | + | chr3_2:69252576-69252595 | Msa0420650:CDS | 45.0% | |
| CGGAACAAAGTAGTAAGGTC+TGG | - | chr3_2:69252630-69252649 | None:intergenic | 45.0% | |
| AGCTAAGAAATCCCGTATGC+AGG | + | chr3_2:69252665-69252684 | Msa0420650:CDS | 45.0% | |
| GCTAAGAAATCCCGTATGCA+GGG | + | chr3_2:69252666-69252685 | Msa0420650:CDS | 45.0% | |
| TAAAATGCGACCCTGCATAC+GGG | - | chr3_2:69252679-69252698 | None:intergenic | 45.0% | |
| !! | CGCATTTTAAGAGTGGTGAG+TGG | + | chr3_2:69252690-69252709 | Msa0420650:intron | 45.0% |
| GAGGGTTATATCTTGGAGAG+TGG | + | chr3_2:69253033-69253052 | Msa0420650:CDS | 45.0% | |
| ACTTGTGAAGAAGGTTCCTC+AGG | + | chr3_2:69253152-69253171 | Msa0420650:CDS | 45.0% | |
| TTCCATCCAGCCAGTGAAAA+TGG | + | chr3_2:69253202-69253221 | Msa0420650:exon | 45.0% | |
| !!! | ACAATGCCATTTTCACTGGC+TGG | - | chr3_2:69253211-69253230 | None:intergenic | 45.0% |
| AGCGAAATGGAAGGGGTTGA+AGG | + | chr3_2:69250504-69250523 | Msa0420650:exon | 50.0% | |
| ! | TTCATCTCCGCCATGGATTG+TGG | - | chr3_2:69250603-69250622 | None:intergenic | 50.0% |
| ! | CAATCCATGGCGGAGATGAA+AGG | + | chr3_2:69250603-69250622 | Msa0420650:CDS | 50.0% |
| !! | GAGATGAAAGGTGCTACCAG+TGG | + | chr3_2:69250615-69250634 | Msa0420650:CDS | 50.0% |
| TCTTCCATTGGGTCTACCAC+TGG | - | chr3_2:69250634-69250653 | None:intergenic | 50.0% | |
| CGAGTGAAGGGTCTTCCATT+GGG | - | chr3_2:69250645-69250664 | None:intergenic | 50.0% | |
| ACGAGTGAAGGGTCTTCCAT+TGG | - | chr3_2:69250646-69250665 | None:intergenic | 50.0% | |
| GCGAAAGCGAAACGATGTTG+AGG | - | chr3_2:69250726-69250745 | None:intergenic | 50.0% | |
| CTTCTGAACAGGGCTTGCAT+TGG | + | chr3_2:69251617-69251636 | Msa0420650:intron | 50.0% | |
| TGCAGCAATGCGAGGACTTT+CGG | + | chr3_2:69252584-69252603 | Msa0420650:CDS | 50.0% | |
| TAGCTTCGTGAGCAGCAAGT+CGG | - | chr3_2:69252650-69252669 | None:intergenic | 50.0% | |
| !! | GCAGGGTCGCATTTTAAGAG+TGG | + | chr3_2:69252683-69252702 | Msa0420650:CDS | 50.0% |
| TTAAGAGTGGTGAGTGGTGG+TGG | + | chr3_2:69252696-69252715 | Msa0420650:intron | 50.0% | |
| !! | GTGAAGAGCTTCTGGTTCAC+AGG | - | chr3_2:69252913-69252932 | None:intergenic | 50.0% |
| ATCTCTTGGGGGCAATTGTC+AGG | - | chr3_2:69252970-69252989 | None:intergenic | 50.0% | |
| ! | AGAGTGGACAAGGGTTAGCA+AGG | + | chr3_2:69253049-69253068 | Msa0420650:CDS | 50.0% |
| ! | GAGTGGACAAGGGTTAGCAA+GGG | + | chr3_2:69253050-69253069 | Msa0420650:CDS | 50.0% |
| !!! | TGCCATTTTCACTGGCTGGA+TGG | - | chr3_2:69253207-69253226 | None:intergenic | 50.0% |
| AGCACCTTTCATCTCCGCCA+TGG | - | chr3_2:69250610-69250629 | None:intergenic | 55.0% | |
| GCTACCAGTGGTAGACCCAA+TGG | + | chr3_2:69250627-69250646 | Msa0420650:CDS | 55.0% | |
| CTCCCCCTACCTCTAACCAT+TGG | - | chr3_2:69252158-69252177 | None:intergenic | 55.0% | |
| TCACAGGCCACTGATGTCGT+GGG | - | chr3_2:69252897-69252916 | None:intergenic | 55.0% | |
| TTCACAGGCCACTGATGTCG+TGG | - | chr3_2:69252898-69252917 | None:intergenic | 55.0% | |
| TGGGGGCAATTGTCAGGTCC+AGG | - | chr3_2:69252964-69252983 | None:intergenic | 60.0% | |
| !! | GTGAGCATTGGCTCTGCCTG+AGG | - | chr3_2:69253171-69253190 | None:intergenic | 60.0% |
| CAGTGCGCCCACGACATCAG+TGG | + | chr3_2:69252887-69252906 | Msa0420650:CDS | 65.0% | |
| TCTTGTGCGCAGCGCTGCTG+AGG | - | chr3_2:69253111-69253130 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 69250321 | 69253399 | 69250321 | ID=Msa0420650;Name=Msa0420650 |
| chr3_2 | mRNA | 69250321 | 69253399 | 69250321 | ID=Msa0420650-mRNA-1;Parent=Msa0420650;Name=Msa0420650-mRNA-1;_AED=0.06;_eAED=0.06;_QI=189|1|1|1|1|1|3|181|257 |
| chr3_2 | exon | 69250321 | 69250770 | 69250321 | ID=Msa0420650-mRNA-1:exon:16426;Parent=Msa0420650-mRNA-1 |
| chr3_2 | exon | 69252546 | 69252704 | 69252546 | ID=Msa0420650-mRNA-1:exon:16427;Parent=Msa0420650-mRNA-1 |
| chr3_2 | exon | 69252865 | 69253399 | 69252865 | ID=Msa0420650-mRNA-1:exon:16428;Parent=Msa0420650-mRNA-1 |
| chr3_2 | five_prime_UTR | 69250321 | 69250509 | 69250321 | ID=Msa0420650-mRNA-1:five_prime_utr;Parent=Msa0420650-mRNA-1 |
| chr3_2 | CDS | 69250510 | 69250770 | 69250510 | ID=Msa0420650-mRNA-1:cds;Parent=Msa0420650-mRNA-1 |
| chr3_2 | CDS | 69252546 | 69252704 | 69252546 | ID=Msa0420650-mRNA-1:cds;Parent=Msa0420650-mRNA-1 |
| chr3_2 | CDS | 69252865 | 69253218 | 69252865 | ID=Msa0420650-mRNA-1:cds;Parent=Msa0420650-mRNA-1 |
| chr3_2 | three_prime_UTR | 69253219 | 69253399 | 69253219 | ID=Msa0420650-mRNA-1:three_prime_utr;Parent=Msa0420650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
