AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0635350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635350 MtrunA17_Chr4g0014921 95.357 280 13 0 1 280 1 280 0.0 545
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635350 AT1G72030.1 47.244 254 111 6 30 276 19 256 3.41e-62 197

Find 62 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTATATGTTCAAATTTA+AGG 0.112410 4_3:+23830788 Msa0635350:CDS
AATTAATATTCTACTTAATT+AGG 0.161235 4_3:-23832534 None:intergenic
CAAGAGTACCTTTACATTTC+AGG 0.210309 4_3:+23832012 Msa0635350:CDS
ATCCACCATGGACAAGTAAT+TGG 0.234201 4_3:+23832463 Msa0635350:CDS
TAACATGCTTATGAGAAATA+TGG 0.235332 4_3:-23830771 None:intergenic
TTTGTTCTTTCAATTCTTTA+AGG 0.264149 4_3:+23831122 Msa0635350:CDS
AAGAGCTTATGAAGAAGATT+TGG 0.266902 4_3:+23832392 Msa0635350:CDS
TAGCAGTATCCAATGCTTTC+AGG 0.268356 4_3:+23832037 Msa0635350:CDS
AATCTTCTTCATAAGCTCTT+AGG 0.289976 4_3:-23832389 None:intergenic
AAATAGGCTGAAGTGCTTTC+AGG 0.312360 4_3:+23831656 Msa0635350:intron
AAACTCATTACCCCACAAAT+TGG 0.313360 4_3:-23832361 None:intergenic
TTCAGACAAAATATTAGAAA+TGG 0.378115 4_3:+23832562 Msa0635350:three_prime_UTR
TGAAAATATGAAGCAAAAGT+TGG 0.383459 4_3:+23830978 Msa0635350:CDS
GTTAACTCAGTTTCTACAAT+TGG 0.383586 4_3:-23830663 None:intergenic
GTGACATAATTTCCAATTTG+TGG 0.387153 4_3:+23832349 Msa0635350:CDS
ATTATATAGGTATGCATGTT+TGG 0.387890 4_3:+23831888 Msa0635350:intron
AACATGCTTATGAGAAATAT+GGG 0.394470 4_3:-23830770 None:intergenic
TAACAACAAATGTACCTATC+AGG 0.398497 4_3:-23831707 None:intergenic
AGAGCTTATGAAGAAGATTT+GGG 0.419407 4_3:+23832393 Msa0635350:CDS
TGACATAATTTCCAATTTGT+GGG 0.426965 4_3:+23832350 Msa0635350:CDS
GTGAATATGGATGGAGGATA+AGG 0.442867 4_3:+23831013 Msa0635350:CDS
TTTGATTGATCTACTGCATA+AGG 0.443397 4_3:+23832783 Msa0635350:three_prime_UTR
AGGTACTCTTGTGCTTCAGC+AGG 0.452395 4_3:-23832000 None:intergenic
GATTCATCAAAGGAACTTGT+AGG 0.457006 4_3:+23831928 Msa0635350:CDS
TTAAATACTCACCTCCTGAT+AGG 0.463612 4_3:+23831693 Msa0635350:CDS
AGTTAACATTAACAAACTAT+AGG 0.469382 4_3:+23830679 Msa0635350:five_prime_UTR
TCCACCATGGACAAGTAATT+GGG 0.475166 4_3:+23832464 Msa0635350:CDS
GCGATGTACGAGAGAGGGAC+AGG 0.482429 4_3:+23832905 Msa0635350:three_prime_UTR
TGATGACACTGAAATAGTAT+TGG 0.500661 4_3:-23832665 None:intergenic
TGCTGATCAGAAAGTGATGT+TGG 0.505427 4_3:+23830939 Msa0635350:CDS
AAATCATTGAAAAGAGCTAC+AGG 0.509660 4_3:-23831102 None:intergenic
CGAACATTGTACACAAATGC+TGG 0.511040 4_3:+23832420 Msa0635350:CDS
ACAATCAAAGAGAGAGCTCA+AGG 0.518793 4_3:+23832845 Msa0635350:three_prime_UTR
CTGCTATGCCTGAAATGTAA+AGG 0.521437 4_3:-23832020 None:intergenic
ACAATACCAAAATAAAATCA+AGG 0.524160 4_3:+23830626 Msa0635350:five_prime_UTR
GGAGATGTTCAAGCACATCT+TGG 0.525750 4_3:-23831978 None:intergenic
ATCAAAGCAGATGTTGAACT+AGG 0.529797 4_3:-23832766 None:intergenic
CCAACCCAATTACTTGTCCA+TGG 0.539516 4_3:-23832468 None:intergenic
GACGAACACACCGTGTTCAA+CGG 0.545339 4_3:-23832881 None:intergenic
GAGAGGGACAGGAGTGTGGT+AGG 0.565456 4_3:+23832916 Msa0635350:three_prime_UTR
ATCTATGAGAGGATTTAAAG+TGG 0.568996 4_3:-23830594 None:intergenic
CCATGGACAAGTAATTGGGT+TGG 0.581303 4_3:+23832468 Msa0635350:CDS
GACATAATTTCCAATTTGTG+GGG 0.585425 4_3:+23832351 Msa0635350:CDS
GTTATCTTAAAATCTATGAG+AGG 0.595864 4_3:-23830605 None:intergenic
GTGGATCTTTAGACACAAGT+TGG 0.596499 4_3:-23832446 None:intergenic
TGGTGTGTGAATATGGATGG+AGG 0.600815 4_3:+23831007 Msa0635350:CDS
GGTACTCTTGTGCTTCAGCA+GGG 0.601704 4_3:-23831999 None:intergenic
TATTTCAGTGTCATCAATCG+TGG 0.604840 4_3:+23832672 Msa0635350:three_prime_UTR
ATATAGGTATGCATGTTTGG+TGG 0.616848 4_3:+23831891 Msa0635350:intron
ACATGCTTATGAGAAATATG+GGG 0.619066 4_3:-23830769 None:intergenic
CAATCAAAGAGAGAGCTCAA+GGG 0.619765 4_3:+23832846 Msa0635350:three_prime_UTR
TCTATGAGAGGATTTAAAGT+GGG 0.627506 4_3:-23830593 None:intergenic
GAATGATCAAGATTCATCAA+AGG 0.633438 4_3:+23831918 Msa0635350:CDS
ACGAGAGAGGGACAGGAGTG+TGG 0.633519 4_3:+23832912 Msa0635350:three_prime_UTR
AGAAGGAAAAGACGATTGCA+AGG 0.649224 4_3:-23832737 None:intergenic
TGAGAGAGAACCGTTGAACA+CGG 0.659539 4_3:+23832871 Msa0635350:three_prime_UTR
CGTCAGCGATGTACGAGAGA+GGG 0.660720 4_3:+23832900 Msa0635350:three_prime_UTR
ACCCAATTACTTGTCCATGG+TGG 0.661718 4_3:-23832465 None:intergenic
TCGTCAGCGATGTACGAGAG+AGG 0.663828 4_3:+23832899 Msa0635350:three_prime_UTR
CAACAAATGTACCTATCAGG+AGG 0.675327 4_3:-23831704 None:intergenic
CATGCTTATGAGAAATATGG+GGG 0.677909 4_3:-23830768 None:intergenic
TTGTGTCTAAAGATCCACCA+TGG 0.708310 4_3:+23832451 Msa0635350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAATAATAATTATTTT+AGG - chr4_3:23831783-23831802 None:intergenic 0.0%
!!! TTAAAAATAATAATTATTTT+AGG - chr4_3:23831783-23831802 None:intergenic 0.0%
!!! GTCAAAATTTATTATTTTAA+AGG - chr4_3:23831569-23831588 None:intergenic 10.0%
!!! ATATTCAAGTATTTTTAAAT+AGG + chr4_3:23832095-23832114 Msa0635350:intron 10.0%
!! AATTAATATTCTACTTAATT+AGG - chr4_3:23832537-23832556 None:intergenic 10.0%
!!! GTCAAAATTTATTATTTTAA+AGG - chr4_3:23831569-23831588 None:intergenic 10.0%
!!! ATATTCAAGTATTTTTAAAT+AGG + chr4_3:23832095-23832114 Msa0635350:intron 10.0%
!! AATTAATATTCTACTTAATT+AGG - chr4_3:23832537-23832556 None:intergenic 10.0%
!! CATTCATAAACTAAAAAAAA+TGG - chr4_3:23830728-23830747 None:intergenic 15.0%
!!! CATTTTTTTTAGTTTATGAA+TGG + chr4_3:23830726-23830745 Msa0635350:exon 15.0%
!! ATGTTATATGTTCAAATTTA+AGG + chr4_3:23830788-23830807 Msa0635350:CDS 15.0%
!! TATATTATATATGTGAAAGT+CGG - chr4_3:23831419-23831438 None:intergenic 15.0%
!! ATCATTTATCAATATGAAAT+TGG + chr4_3:23831754-23831773 Msa0635350:intron 15.0%
!! CATTCATAAACTAAAAAAAA+TGG - chr4_3:23830728-23830747 None:intergenic 15.0%
!!! CATTTTTTTTAGTTTATGAA+TGG + chr4_3:23830726-23830745 Msa0635350:exon 15.0%
!! ATGTTATATGTTCAAATTTA+AGG + chr4_3:23830788-23830807 Msa0635350:CDS 15.0%
!! TATATTATATATGTGAAAGT+CGG - chr4_3:23831419-23831438 None:intergenic 15.0%
!! ATCATTTATCAATATGAAAT+TGG + chr4_3:23831754-23831773 Msa0635350:intron 15.0%
!! ACAATACCAAAATAAAATCA+AGG + chr4_3:23830626-23830645 Msa0635350:five_prime_UTR 20.0%
!!! TACAATTGGTATTTGATTTT+AGG - chr4_3:23830652-23830671 None:intergenic 20.0%
!! AGTTAACATTAACAAACTAT+AGG + chr4_3:23830679-23830698 Msa0635350:five_prime_UTR 20.0%
!! CTAAAAAAAATGGTAACTTT+AGG - chr4_3:23830718-23830737 None:intergenic 20.0%
!!! ATTCTATAACATGCATTTTT+TGG - chr4_3:23830835-23830854 None:intergenic 20.0%
!! TAAGAAGAAAAAGAAAAACT+TGG + chr4_3:23830854-23830873 Msa0635350:CDS 20.0%
!! TTTGTTCTTTCAATTCTTTA+AGG + chr4_3:23831122-23831141 Msa0635350:CDS 20.0%
!!! AGTTACAAGATTTTGAAATA+TGG + chr4_3:23831238-23831257 Msa0635350:intron 20.0%
!! TGTATATCATGCTATTATAT+AGG + chr4_3:23831875-23831894 Msa0635350:intron 20.0%
!! TTCAGACAAAATATTAGAAA+TGG + chr4_3:23832562-23832581 Msa0635350:three_prime_UTR 20.0%
!! ACAATACCAAAATAAAATCA+AGG + chr4_3:23830626-23830645 Msa0635350:five_prime_UTR 20.0%
!!! TACAATTGGTATTTGATTTT+AGG - chr4_3:23830652-23830671 None:intergenic 20.0%
!! AGTTAACATTAACAAACTAT+AGG + chr4_3:23830679-23830698 Msa0635350:five_prime_UTR 20.0%
!! CTAAAAAAAATGGTAACTTT+AGG - chr4_3:23830718-23830737 None:intergenic 20.0%
!!! ATTCTATAACATGCATTTTT+TGG - chr4_3:23830835-23830854 None:intergenic 20.0%
!! TAAGAAGAAAAAGAAAAACT+TGG + chr4_3:23830854-23830873 Msa0635350:CDS 20.0%
!! TTTGTTCTTTCAATTCTTTA+AGG + chr4_3:23831122-23831141 Msa0635350:CDS 20.0%
!!! AGTTACAAGATTTTGAAATA+TGG + chr4_3:23831238-23831257 Msa0635350:intron 20.0%
!! TGTATATCATGCTATTATAT+AGG + chr4_3:23831875-23831894 Msa0635350:intron 20.0%
!! TTCAGACAAAATATTAGAAA+TGG + chr4_3:23832562-23832581 Msa0635350:three_prime_UTR 20.0%
! GTTATCTTAAAATCTATGAG+AGG - chr4_3:23830608-23830627 None:intergenic 25.0%
!!! TTTAGGCCTTGATTTTATTT+TGG - chr4_3:23830635-23830654 None:intergenic 25.0%
! AACATGCTTATGAGAAATAT+GGG - chr4_3:23830773-23830792 None:intergenic 25.0%
! TAACATGCTTATGAGAAATA+TGG - chr4_3:23830774-23830793 None:intergenic 25.0%
! TGAAAATATGAAGCAAAAGT+TGG + chr4_3:23830978-23830997 Msa0635350:CDS 25.0%
!!! TACAAGATTTTGAAATATGG+TGG + chr4_3:23831241-23831260 Msa0635350:intron 25.0%
! TTCTCTACTTATTGTCTTAA+AGG - chr4_3:23831381-23831400 None:intergenic 25.0%
! AAGACAATAAGTAGAGAATT+TGG + chr4_3:23831383-23831402 Msa0635350:intron 25.0%
! AACTAAAGGCAAATAAAATG+TGG - chr4_3:23831605-23831624 None:intergenic 25.0%
!!! ACATTTTATTTGCCTTTAGT+TGG + chr4_3:23831604-23831623 Msa0635350:intron 25.0%
! AACATTAAACAACCAACTAA+AGG - chr4_3:23831619-23831638 None:intergenic 25.0%
! CAATTTATTATCTCATGCTA+AGG - chr4_3:23831829-23831848 None:intergenic 25.0%
! ATTATATAGGTATGCATGTT+TGG + chr4_3:23831888-23831907 Msa0635350:intron 25.0%
! TGACATAATTTCCAATTTGT+GGG + chr4_3:23832350-23832369 Msa0635350:CDS 25.0%
! GTTATCTTAAAATCTATGAG+AGG - chr4_3:23830608-23830627 None:intergenic 25.0%
!!! TTTAGGCCTTGATTTTATTT+TGG - chr4_3:23830635-23830654 None:intergenic 25.0%
! AACATGCTTATGAGAAATAT+GGG - chr4_3:23830773-23830792 None:intergenic 25.0%
! TAACATGCTTATGAGAAATA+TGG - chr4_3:23830774-23830793 None:intergenic 25.0%
! TGAAAATATGAAGCAAAAGT+TGG + chr4_3:23830978-23830997 Msa0635350:CDS 25.0%
!!! TACAAGATTTTGAAATATGG+TGG + chr4_3:23831241-23831260 Msa0635350:intron 25.0%
! TTCTCTACTTATTGTCTTAA+AGG - chr4_3:23831381-23831400 None:intergenic 25.0%
! AAGACAATAAGTAGAGAATT+TGG + chr4_3:23831383-23831402 Msa0635350:intron 25.0%
! AACTAAAGGCAAATAAAATG+TGG - chr4_3:23831605-23831624 None:intergenic 25.0%
!!! ACATTTTATTTGCCTTTAGT+TGG + chr4_3:23831604-23831623 Msa0635350:intron 25.0%
! AACATTAAACAACCAACTAA+AGG - chr4_3:23831619-23831638 None:intergenic 25.0%
! CAATTTATTATCTCATGCTA+AGG - chr4_3:23831829-23831848 None:intergenic 25.0%
! ATTATATAGGTATGCATGTT+TGG + chr4_3:23831888-23831907 Msa0635350:intron 25.0%
! TGACATAATTTCCAATTTGT+GGG + chr4_3:23832350-23832369 Msa0635350:CDS 25.0%
! TCTATGAGAGGATTTAAAGT+GGG - chr4_3:23830596-23830615 None:intergenic 30.0%
ATCTATGAGAGGATTTAAAG+TGG - chr4_3:23830597-23830616 None:intergenic 30.0%
GTTAACTCAGTTTCTACAAT+TGG - chr4_3:23830666-23830685 None:intergenic 30.0%
ACATGCTTATGAGAAATATG+GGG - chr4_3:23830772-23830791 None:intergenic 30.0%
AGAAAAAGAAAAACTTGGAG+TGG + chr4_3:23830859-23830878 Msa0635350:CDS 30.0%
!!! GAAGCAAAAGTTGGATTTTT+TGG + chr4_3:23830987-23831006 Msa0635350:CDS 30.0%
!!! GATTTTTTGGTGTGTGAATA+TGG + chr4_3:23831000-23831019 Msa0635350:CDS 30.0%
GAATGCAGATGAGATAAAAA+TGG + chr4_3:23831047-23831066 Msa0635350:CDS 30.0%
AAATCATTGAAAAGAGCTAC+AGG - chr4_3:23831105-23831124 None:intergenic 30.0%
TTTGATCCAAACTCTCTTTA+TGG + chr4_3:23831283-23831302 Msa0635350:intron 30.0%
ATTTCACCATAAAGAGAGTT+TGG - chr4_3:23831292-23831311 None:intergenic 30.0%
GAAATTGCTTCTCAAATTGT+AGG + chr4_3:23831307-23831326 Msa0635350:intron 30.0%
TTCTAACCACTACACAATTT+GGG - chr4_3:23831353-23831372 None:intergenic 30.0%
ATTCTAACCACTACACAATT+TGG - chr4_3:23831354-23831373 None:intergenic 30.0%
! TAAGTAGAGAATTTGGAGTT+CGG + chr4_3:23831390-23831409 Msa0635350:intron 30.0%
AAAGGCAAATAAAATGTGGT+AGG - chr4_3:23831601-23831620 None:intergenic 30.0%
TATTCATTCTTGACCCAAAT+AGG + chr4_3:23831640-23831659 Msa0635350:intron 30.0%
TAACAACAAATGTACCTATC+AGG - chr4_3:23831710-23831729 None:intergenic 30.0%
GAATGATCAAGATTCATCAA+AGG + chr4_3:23831918-23831937 Msa0635350:CDS 30.0%
!! TTTTAATCACCTGAAAGCAT+TGG - chr4_3:23832049-23832068 None:intergenic 30.0%
! GTTTTCTTTTTGTGTGTTCA+GGG - chr4_3:23832150-23832169 None:intergenic 30.0%
! AGTTTTCTTTTTGTGTGTTC+AGG - chr4_3:23832151-23832170 None:intergenic 30.0%
ACGTTAATGAGACTAATTGA+TGG + chr4_3:23832286-23832305 Msa0635350:intron 30.0%
GTGACATAATTTCCAATTTG+TGG + chr4_3:23832349-23832368 Msa0635350:CDS 30.0%
GACATAATTTCCAATTTGTG+GGG + chr4_3:23832351-23832370 Msa0635350:CDS 30.0%
AATCTTCTTCATAAGCTCTT+AGG - chr4_3:23832392-23832411 None:intergenic 30.0%
AAGAGCTTATGAAGAAGATT+TGG + chr4_3:23832392-23832411 Msa0635350:CDS 30.0%
AGAGCTTATGAAGAAGATTT+GGG + chr4_3:23832393-23832412 Msa0635350:CDS 30.0%
TGATGACACTGAAATAGTAT+TGG - chr4_3:23832668-23832687 None:intergenic 30.0%
TTTGATTGATCTACTGCATA+AGG + chr4_3:23832783-23832802 Msa0635350:three_prime_UTR 30.0%
! TCTATGAGAGGATTTAAAGT+GGG - chr4_3:23830596-23830615 None:intergenic 30.0%
ATCTATGAGAGGATTTAAAG+TGG - chr4_3:23830597-23830616 None:intergenic 30.0%
GTTAACTCAGTTTCTACAAT+TGG - chr4_3:23830666-23830685 None:intergenic 30.0%
ACATGCTTATGAGAAATATG+GGG - chr4_3:23830772-23830791 None:intergenic 30.0%
AGAAAAAGAAAAACTTGGAG+TGG + chr4_3:23830859-23830878 Msa0635350:CDS 30.0%
!!! GAAGCAAAAGTTGGATTTTT+TGG + chr4_3:23830987-23831006 Msa0635350:CDS 30.0%
!!! GATTTTTTGGTGTGTGAATA+TGG + chr4_3:23831000-23831019 Msa0635350:CDS 30.0%
GAATGCAGATGAGATAAAAA+TGG + chr4_3:23831047-23831066 Msa0635350:CDS 30.0%
AAATCATTGAAAAGAGCTAC+AGG - chr4_3:23831105-23831124 None:intergenic 30.0%
TTTGATCCAAACTCTCTTTA+TGG + chr4_3:23831283-23831302 Msa0635350:intron 30.0%
ATTTCACCATAAAGAGAGTT+TGG - chr4_3:23831292-23831311 None:intergenic 30.0%
GAAATTGCTTCTCAAATTGT+AGG + chr4_3:23831307-23831326 Msa0635350:intron 30.0%
TTCTAACCACTACACAATTT+GGG - chr4_3:23831353-23831372 None:intergenic 30.0%
ATTCTAACCACTACACAATT+TGG - chr4_3:23831354-23831373 None:intergenic 30.0%
! TAAGTAGAGAATTTGGAGTT+CGG + chr4_3:23831390-23831409 Msa0635350:intron 30.0%
AAAGGCAAATAAAATGTGGT+AGG - chr4_3:23831601-23831620 None:intergenic 30.0%
TATTCATTCTTGACCCAAAT+AGG + chr4_3:23831640-23831659 Msa0635350:intron 30.0%
TAACAACAAATGTACCTATC+AGG - chr4_3:23831710-23831729 None:intergenic 30.0%
GAATGATCAAGATTCATCAA+AGG + chr4_3:23831918-23831937 Msa0635350:CDS 30.0%
!! TTTTAATCACCTGAAAGCAT+TGG - chr4_3:23832049-23832068 None:intergenic 30.0%
! GTTTTCTTTTTGTGTGTTCA+GGG - chr4_3:23832150-23832169 None:intergenic 30.0%
! AGTTTTCTTTTTGTGTGTTC+AGG - chr4_3:23832151-23832170 None:intergenic 30.0%
ACGTTAATGAGACTAATTGA+TGG + chr4_3:23832286-23832305 Msa0635350:intron 30.0%
GTGACATAATTTCCAATTTG+TGG + chr4_3:23832349-23832368 Msa0635350:CDS 30.0%
GACATAATTTCCAATTTGTG+GGG + chr4_3:23832351-23832370 Msa0635350:CDS 30.0%
AATCTTCTTCATAAGCTCTT+AGG - chr4_3:23832392-23832411 None:intergenic 30.0%
AAGAGCTTATGAAGAAGATT+TGG + chr4_3:23832392-23832411 Msa0635350:CDS 30.0%
AGAGCTTATGAAGAAGATTT+GGG + chr4_3:23832393-23832412 Msa0635350:CDS 30.0%
TGATGACACTGAAATAGTAT+TGG - chr4_3:23832668-23832687 None:intergenic 30.0%
TTTGATTGATCTACTGCATA+AGG + chr4_3:23832783-23832802 Msa0635350:three_prime_UTR 30.0%
CATGCTTATGAGAAATATGG+GGG - chr4_3:23830771-23830790 None:intergenic 35.0%
!! TTTTGGTGTGTGAATATGGA+TGG + chr4_3:23831004-23831023 Msa0635350:CDS 35.0%
TTGCTTCTCAAATTGTAGGA+TGG + chr4_3:23831311-23831330 Msa0635350:intron 35.0%
! TCTTTTCCCAAATTGTGTAG+TGG + chr4_3:23831344-23831363 Msa0635350:intron 35.0%
CTGAACATAGCTCAGTTAAT+AGG - chr4_3:23831446-23831465 None:intergenic 35.0%
AAAATGTGGTAGGTGCTTAA+TGG - chr4_3:23831591-23831610 None:intergenic 35.0%
TTAAATACTCACCTCCTGAT+AGG + chr4_3:23831693-23831712 Msa0635350:CDS 35.0%
ATATAGGTATGCATGTTTGG+TGG + chr4_3:23831891-23831910 Msa0635350:intron 35.0%
GATTCATCAAAGGAACTTGT+AGG + chr4_3:23831928-23831947 Msa0635350:CDS 35.0%
!! CAAGAGTACCTTTACATTTC+AGG + chr4_3:23832012-23832031 Msa0635350:CDS 35.0%
AAACTCATTACCCCACAAAT+TGG - chr4_3:23832364-23832383 None:intergenic 35.0%
TATTTCAGTGTCATCAATCG+TGG + chr4_3:23832672-23832691 Msa0635350:three_prime_UTR 35.0%
ATCAAAGCAGATGTTGAACT+AGG - chr4_3:23832769-23832788 None:intergenic 35.0%
CATGCTTATGAGAAATATGG+GGG - chr4_3:23830771-23830790 None:intergenic 35.0%
!! TTTTGGTGTGTGAATATGGA+TGG + chr4_3:23831004-23831023 Msa0635350:CDS 35.0%
TTGCTTCTCAAATTGTAGGA+TGG + chr4_3:23831311-23831330 Msa0635350:intron 35.0%
! TCTTTTCCCAAATTGTGTAG+TGG + chr4_3:23831344-23831363 Msa0635350:intron 35.0%
CTGAACATAGCTCAGTTAAT+AGG - chr4_3:23831446-23831465 None:intergenic 35.0%
AAAATGTGGTAGGTGCTTAA+TGG - chr4_3:23831591-23831610 None:intergenic 35.0%
TTAAATACTCACCTCCTGAT+AGG + chr4_3:23831693-23831712 Msa0635350:CDS 35.0%
ATATAGGTATGCATGTTTGG+TGG + chr4_3:23831891-23831910 Msa0635350:intron 35.0%
GATTCATCAAAGGAACTTGT+AGG + chr4_3:23831928-23831947 Msa0635350:CDS 35.0%
!! CAAGAGTACCTTTACATTTC+AGG + chr4_3:23832012-23832031 Msa0635350:CDS 35.0%
AAACTCATTACCCCACAAAT+TGG - chr4_3:23832364-23832383 None:intergenic 35.0%
TATTTCAGTGTCATCAATCG+TGG + chr4_3:23832672-23832691 Msa0635350:three_prime_UTR 35.0%
ATCAAAGCAGATGTTGAACT+AGG - chr4_3:23832769-23832788 None:intergenic 35.0%
TGCTGATCAGAAAGTGATGT+TGG + chr4_3:23830939-23830958 Msa0635350:CDS 40.0%
GTGAATATGGATGGAGGATA+AGG + chr4_3:23831013-23831032 Msa0635350:CDS 40.0%
!! GAAAGCACTTCAGCCTATTT+GGG - chr4_3:23831656-23831675 None:intergenic 40.0%
!! TGAAAGCACTTCAGCCTATT+TGG - chr4_3:23831657-23831676 None:intergenic 40.0%
! AAATAGGCTGAAGTGCTTTC+AGG + chr4_3:23831656-23831675 Msa0635350:intron 40.0%
CAACAAATGTACCTATCAGG+AGG - chr4_3:23831707-23831726 None:intergenic 40.0%
CTGCTATGCCTGAAATGTAA+AGG - chr4_3:23832023-23832042 None:intergenic 40.0%
TAGCAGTATCCAATGCTTTC+AGG + chr4_3:23832037-23832056 Msa0635350:CDS 40.0%
TCGCTAACATTAGCAACTAG+TGG + chr4_3:23832213-23832232 Msa0635350:intron 40.0%
! ATGAGACTAATTGATGGCAC+AGG + chr4_3:23832292-23832311 Msa0635350:intron 40.0%
CGAACATTGTACACAAATGC+TGG + chr4_3:23832420-23832439 Msa0635350:CDS 40.0%
GTGGATCTTTAGACACAAGT+TGG - chr4_3:23832449-23832468 None:intergenic 40.0%
TTGTGTCTAAAGATCCACCA+TGG + chr4_3:23832451-23832470 Msa0635350:CDS 40.0%
ATCCACCATGGACAAGTAAT+TGG + chr4_3:23832463-23832482 Msa0635350:CDS 40.0%
TCCACCATGGACAAGTAATT+GGG + chr4_3:23832464-23832483 Msa0635350:CDS 40.0%
AGAAGGAAAAGACGATTGCA+AGG - chr4_3:23832740-23832759 None:intergenic 40.0%
! GTTGAACTAGGTTTTGCAGA+AGG - chr4_3:23832757-23832776 None:intergenic 40.0%
ACAATCAAAGAGAGAGCTCA+AGG + chr4_3:23832845-23832864 Msa0635350:three_prime_UTR 40.0%
CAATCAAAGAGAGAGCTCAA+GGG + chr4_3:23832846-23832865 Msa0635350:three_prime_UTR 40.0%
TGCTGATCAGAAAGTGATGT+TGG + chr4_3:23830939-23830958 Msa0635350:CDS 40.0%
GTGAATATGGATGGAGGATA+AGG + chr4_3:23831013-23831032 Msa0635350:CDS 40.0%
!! GAAAGCACTTCAGCCTATTT+GGG - chr4_3:23831656-23831675 None:intergenic 40.0%
!! TGAAAGCACTTCAGCCTATT+TGG - chr4_3:23831657-23831676 None:intergenic 40.0%
! AAATAGGCTGAAGTGCTTTC+AGG + chr4_3:23831656-23831675 Msa0635350:intron 40.0%
CAACAAATGTACCTATCAGG+AGG - chr4_3:23831707-23831726 None:intergenic 40.0%
CTGCTATGCCTGAAATGTAA+AGG - chr4_3:23832023-23832042 None:intergenic 40.0%
TAGCAGTATCCAATGCTTTC+AGG + chr4_3:23832037-23832056 Msa0635350:CDS 40.0%
TCGCTAACATTAGCAACTAG+TGG + chr4_3:23832213-23832232 Msa0635350:intron 40.0%
! ATGAGACTAATTGATGGCAC+AGG + chr4_3:23832292-23832311 Msa0635350:intron 40.0%
CGAACATTGTACACAAATGC+TGG + chr4_3:23832420-23832439 Msa0635350:CDS 40.0%
GTGGATCTTTAGACACAAGT+TGG - chr4_3:23832449-23832468 None:intergenic 40.0%
TTGTGTCTAAAGATCCACCA+TGG + chr4_3:23832451-23832470 Msa0635350:CDS 40.0%
ATCCACCATGGACAAGTAAT+TGG + chr4_3:23832463-23832482 Msa0635350:CDS 40.0%
TCCACCATGGACAAGTAATT+GGG + chr4_3:23832464-23832483 Msa0635350:CDS 40.0%
AGAAGGAAAAGACGATTGCA+AGG - chr4_3:23832740-23832759 None:intergenic 40.0%
! GTTGAACTAGGTTTTGCAGA+AGG - chr4_3:23832757-23832776 None:intergenic 40.0%
ACAATCAAAGAGAGAGCTCA+AGG + chr4_3:23832845-23832864 Msa0635350:three_prime_UTR 40.0%
CAATCAAAGAGAGAGCTCAA+GGG + chr4_3:23832846-23832865 Msa0635350:three_prime_UTR 40.0%
TGGTGTGTGAATATGGATGG+AGG + chr4_3:23831007-23831026 Msa0635350:CDS 45.0%
GGAGATGTTCAAGCACATCT+TGG - chr4_3:23831981-23832000 None:intergenic 45.0%
! AGACTAATTGATGGCACAGG+AGG + chr4_3:23832295-23832314 Msa0635350:intron 45.0%
ACCCAATTACTTGTCCATGG+TGG - chr4_3:23832468-23832487 None:intergenic 45.0%
CCAACCCAATTACTTGTCCA+TGG - chr4_3:23832471-23832490 None:intergenic 45.0%
CCATGGACAAGTAATTGGGT+TGG + chr4_3:23832468-23832487 Msa0635350:CDS 45.0%
TGAGAGAGAACCGTTGAACA+CGG + chr4_3:23832871-23832890 Msa0635350:three_prime_UTR 45.0%
TGGTGTGTGAATATGGATGG+AGG + chr4_3:23831007-23831026 Msa0635350:CDS 45.0%
GGAGATGTTCAAGCACATCT+TGG - chr4_3:23831981-23832000 None:intergenic 45.0%
! AGACTAATTGATGGCACAGG+AGG + chr4_3:23832295-23832314 Msa0635350:intron 45.0%
ACCCAATTACTTGTCCATGG+TGG - chr4_3:23832468-23832487 None:intergenic 45.0%
CCAACCCAATTACTTGTCCA+TGG - chr4_3:23832471-23832490 None:intergenic 45.0%
CCATGGACAAGTAATTGGGT+TGG + chr4_3:23832468-23832487 Msa0635350:CDS 45.0%
TGAGAGAGAACCGTTGAACA+CGG + chr4_3:23832871-23832890 Msa0635350:three_prime_UTR 45.0%
GGTACTCTTGTGCTTCAGCA+GGG - chr4_3:23832002-23832021 None:intergenic 50.0%
AGGTACTCTTGTGCTTCAGC+AGG - chr4_3:23832003-23832022 None:intergenic 50.0%
! CTAATTGATGGCACAGGAGG+AGG + chr4_3:23832298-23832317 Msa0635350:intron 50.0%
GACGAACACACCGTGTTCAA+CGG - chr4_3:23832884-23832903 None:intergenic 50.0%
GGTACTCTTGTGCTTCAGCA+GGG - chr4_3:23832002-23832021 None:intergenic 50.0%
AGGTACTCTTGTGCTTCAGC+AGG - chr4_3:23832003-23832022 None:intergenic 50.0%
! CTAATTGATGGCACAGGAGG+AGG + chr4_3:23832298-23832317 Msa0635350:intron 50.0%
GACGAACACACCGTGTTCAA+CGG - chr4_3:23832884-23832903 None:intergenic 50.0%
TCGTCAGCGATGTACGAGAG+AGG + chr4_3:23832899-23832918 Msa0635350:three_prime_UTR 55.0%
CGTCAGCGATGTACGAGAGA+GGG + chr4_3:23832900-23832919 Msa0635350:three_prime_UTR 55.0%
TCGTCAGCGATGTACGAGAG+AGG + chr4_3:23832899-23832918 Msa0635350:three_prime_UTR 55.0%
CGTCAGCGATGTACGAGAGA+GGG + chr4_3:23832900-23832919 Msa0635350:three_prime_UTR 55.0%
GCGATGTACGAGAGAGGGAC+AGG + chr4_3:23832905-23832924 Msa0635350:three_prime_UTR 60.0%
ACGAGAGAGGGACAGGAGTG+TGG + chr4_3:23832912-23832931 Msa0635350:three_prime_UTR 60.0%
! GAGAGGGACAGGAGTGTGGT+AGG + chr4_3:23832916-23832935 Msa0635350:three_prime_UTR 60.0%
GCGATGTACGAGAGAGGGAC+AGG + chr4_3:23832905-23832924 Msa0635350:three_prime_UTR 60.0%
ACGAGAGAGGGACAGGAGTG+TGG + chr4_3:23832912-23832931 Msa0635350:three_prime_UTR 60.0%
! GAGAGGGACAGGAGTGTGGT+AGG + chr4_3:23832916-23832935 Msa0635350:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 23830591 23832958 23830591 ID=Msa0635350;Name=Msa0635350
chr4_3 mRNA 23830591 23832958 23830591 ID=Msa0635350-mRNA-1;Parent=Msa0635350;Name=Msa0635350-mRNA-1;_AED=0.16;_eAED=0.16;_QI=154|1|1|1|1|1|4|416|280
chr4_3 exon 23830591 23831143 23830591 ID=Msa0635350-mRNA-1:exon:6124;Parent=Msa0635350-mRNA-1
chr4_3 exon 23831662 23831714 23831662 ID=Msa0635350-mRNA-1:exon:6125;Parent=Msa0635350-mRNA-1
chr4_3 exon 23831897 23832058 23831897 ID=Msa0635350-mRNA-1:exon:6126;Parent=Msa0635350-mRNA-1
chr4_3 exon 23832314 23832958 23832314 ID=Msa0635350-mRNA-1:exon:6127;Parent=Msa0635350-mRNA-1
chr4_3 five_prime_UTR 23830591 23830744 23830591 ID=Msa0635350-mRNA-1:five_prime_utr;Parent=Msa0635350-mRNA-1
chr4_3 CDS 23830745 23831143 23830745 ID=Msa0635350-mRNA-1:cds;Parent=Msa0635350-mRNA-1
chr4_3 CDS 23831662 23831714 23831662 ID=Msa0635350-mRNA-1:cds;Parent=Msa0635350-mRNA-1
chr4_3 CDS 23831897 23832058 23831897 ID=Msa0635350-mRNA-1:cds;Parent=Msa0635350-mRNA-1
chr4_3 CDS 23832314 23832542 23832314 ID=Msa0635350-mRNA-1:cds;Parent=Msa0635350-mRNA-1
chr4_3 three_prime_UTR 23832543 23832958 23832543 ID=Msa0635350-mRNA-1:three_prime_utr;Parent=Msa0635350-mRNA-1
Gene Sequence

>Msa0635350

ATGGCACATTTATTTTCAAGCAACCCCCATATTTCTCATAAGCATGTTATATGTTCAAATTTAAGGTATTATGATGTTATAACAACACCAAAAAATGCATGTTATAGAATAAGAAGAAAAAGAAAAACTTGGAGTGGTTCAAAGTTGCAATGCAGTAGAAGCAATAGTACAAGTAGTTCAGAACAATTATATTTTGCTGATCAGAAAGTGATGTTGGAAATTGAGAATGATAGTGAAAATATGAAGCAAAAGTTGGATTTTTTGGTGTGTGAATATGGATGGAGGATAAGGAGATTAATTGAGAATGCAGATGAGATAAAAATGGCTGCTCAAGTTCAAGCTGAAGCTTTTCATGATCCTGTAGCTCTTTTCAATGATTTGTTCTTTCAATTCTTTAAGGCTGAAGTGCTTTCAGGACTGCTTTACAAGCTTAAATACTCACCTCCTGATAGGTATGCATGTTTGGTGGCTGAGAATGATCAAGATTCATCAAAGGAACTTGTAGGTGTTATAGATGTTACTGTAATGAGAGACCAAGATGTGCTTGAACATCTCCCTGCTGAAGCACAAGAGTACCTTTACATTTCAGGCATAGCAGTATCCAATGCTTTCAGGAGGAGGAAAATAGCAACTGTTATGTTGAAAGCATGTGACATAATTTCCAATTTGTGGGGTAATGAGTTTCTTGTCCTAAGAGCTTATGAAGAAGATTTGGGTGCTCGAACATTGTACACAAATGCTGGCTACCAACTTGTGTCTAAAGATCCACCATGGACAAGTAATTGGGTTGGAAGAAAATGTCGTGTTCTTATGATCAAAAGAATTAGTTTATTGCCTAATTAA

Protein sequence

>Msa0635350

MAHLFSSNPHISHKHVICSNLRYYDVITTPKNACYRIRRKRKTWSGSKLQCSRSNSTSSSEQLYFADQKVMLEIENDSENMKQKLDFLVCEYGWRIRRLIENADEIKMAAQVQAEAFHDPVALFNDLFFQFFKAEVLSGLLYKLKYSPPDRYACLVAENDQDSSKELVGVIDVTVMRDQDVLEHLPAEAQEYLYISGIAVSNAFRRRKIATVMLKACDIISNLWGNEFLVLRAYEEDLGARTLYTNAGYQLVSKDPPWTSNWVGRKCRVLMIKRISLLPN*