AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469270 MtrunA17_Chr3g0123861 98.858 438 5 0 1 438 1 438 0.0 890
Msa0469270 MtrunA17_Chr2g0333221 48.744 398 188 5 41 428 34 425 1.71e-129 383
Msa0469270 MtrunA17_Chr6g0478651 44.904 363 189 4 76 428 60 421 7.62e-99 305
Msa0469270 MtrunA17_Chr3g0087741 40.845 355 184 8 82 427 89 426 2.65e-71 231
Msa0469270 MtrunA17_Chr4g0010781 38.736 364 208 6 61 422 71 421 2.08e-70 229
Msa0469270 MtrunA17_Chr5g0426951 34.140 372 211 10 79 434 80 433 4.55e-63 211
Msa0469270 MtrunA17_Chr8g0334811 34.615 338 205 9 83 411 15 345 1.97e-52 181
Msa0469270 MtrunA17_Chr2g0322181 31.909 351 220 9 83 423 14 355 1.57e-38 144
Msa0469270 MtrunA17_Chr4g0025401 33.524 349 215 9 83 423 14 353 1.34e-37 141
Msa0469270 MtrunA17_Chr7g0269841 31.412 347 203 12 83 425 27 342 1.40e-34 131
Msa0469270 MtrunA17_Chr3g0138471 28.863 343 213 11 81 419 3 318 3.95e-30 119
Msa0469270 MtrunA17_Chr2g0282741 61.039 77 24 2 81 153 3 77 3.82e-21 94.0
Msa0469270 MtrunA17_Chr2g0282761 51.961 102 36 4 82 180 4 95 2.26e-20 91.7
Msa0469270 MtrunA17_Chr4g0040501 53.763 93 32 3 81 164 3 93 4.12e-20 91.3
Msa0469270 MtrunA17_Chr7g0242951 54.667 75 32 1 82 156 27 99 1.11e-18 88.6
Msa0469270 MtrunA17_Chr4g0006391 54.054 74 32 1 81 152 3 76 2.15e-18 85.9
Msa0469270 MtrunA17_Chr2g0324921 53.333 75 33 1 81 153 3 77 7.37e-18 84.3
Msa0469270 MtrunA17_Chr7g0253281 57.143 63 27 0 82 144 54 116 2.18e-16 79.7
Msa0469270 MtrunA17_Chr1g0209551 58.571 70 28 1 82 150 16 85 1.95e-15 77.8
Msa0469270 MtrunA17_Chr7g0263971 55.385 65 27 1 82 144 369 433 3.59e-15 77.4
Msa0469270 MtrunA17_Chr2g0295821 37.500 104 60 1 77 175 99 202 5.97e-15 75.9
Msa0469270 MtrunA17_Chr2g0328581 33.516 182 70 7 38 198 11 162 2.01e-14 72.0
Msa0469270 MtrunA17_Chr2g0295831 49.296 71 35 1 74 144 103 172 2.84e-14 72.0
Msa0469270 MtrunA17_Chr3g0091361 51.389 72 33 1 82 151 5 76 3.70e-14 71.2
Msa0469270 MtrunA17_Chr5g0414471 57.576 66 27 1 82 146 25 90 7.73e-14 73.2
Msa0469270 MtrunA17_Chr3g0093111 45.679 81 37 2 82 159 2 78 1.24e-13 71.6
Msa0469270 MtrunA17_Chr7g0271891 48.485 66 29 2 83 143 17 82 2.16e-13 67.8
Msa0469270 MtrunA17_Chr8g0344721 42.391 92 42 2 82 166 10 97 3.81e-13 68.9
Msa0469270 MtrunA17_Chr5g0399201 41.250 80 43 1 82 157 12 91 5.20e-13 70.9
Msa0469270 MtrunA17_Chr6g0460411 42.045 88 38 2 82 163 2 82 7.37e-13 67.8
Msa0469270 MtrunA17_Chr6g0460461 42.045 88 38 2 82 163 2 82 8.81e-13 67.4
Msa0469270 MtrunA17_Chr2g0307061 45.070 71 39 0 77 147 105 175 1.36e-12 68.9
Msa0469270 MtrunA17_Chr1g0159491 40.580 69 40 1 80 147 4 72 1.82e-12 62.8
Msa0469270 MtrunA17_Chr1g0173931 53.030 66 26 2 84 146 40 103 2.06e-12 67.4
Msa0469270 MtrunA17_Chr8g0352451 52.174 69 32 1 83 150 73 141 2.31e-12 68.6
Msa0469270 MtrunA17_Chr5g0393371 45.833 72 38 1 80 150 4 75 3.76e-12 67.8
Msa0469270 MtrunA17_Chr4g0021141 48.485 66 33 1 82 146 22 87 4.32e-12 63.5
Msa0469270 MtrunA17_Chr4g0010801 35.833 120 71 3 213 330 49 164 5.68e-12 64.7
Msa0469270 MtrunA17_Chr1g0206121 48.387 62 32 0 82 143 35 96 1.27e-11 65.5
Msa0469270 MtrunA17_Chr5g0415731 38.889 90 46 2 80 160 3 92 1.82e-11 62.0
Msa0469270 MtrunA17_Chr6g0460381 44.118 68 32 1 82 143 3 70 2.47e-11 62.8
Msa0469270 MtrunA17_Chr6g0476751 40.964 83 48 1 77 158 61 143 2.77e-11 65.9
Msa0469270 MtrunA17_Chr8g0378161 38.889 72 41 1 76 144 54 125 3.31e-11 62.4
Msa0469270 MtrunA17_Chr5g0415751 25.581 129 94 2 292 419 26 153 4.17e-11 61.2
Msa0469270 MtrunA17_Chr1g0178901 31.690 142 86 2 80 221 65 195 5.14e-11 64.7
Msa0469270 MtrunA17_Chr2g0301881 40.741 81 45 2 82 161 99 177 5.41e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469270 AT2G22360.1 72.210 439 115 5 1 434 1 437 0.0 654
Msa0469270 AT4G39960.1 67.929 449 131 5 1 438 1 447 0.0 620
Msa0469270 AT4G39960.2 67.929 449 131 5 1 438 1 447 0.0 620
Msa0469270 AT1G80030.4 51.743 373 162 7 70 428 62 430 1.59e-125 373
Msa0469270 AT1G80030.2 51.743 373 162 7 70 428 62 430 2.03e-125 373
Msa0469270 AT1G80030.3 51.743 373 162 7 70 428 62 430 2.03e-125 373
Msa0469270 AT1G80030.1 51.743 373 162 7 70 428 62 430 2.03e-125 373
Msa0469270 AT3G17830.1 46.076 395 196 6 42 425 29 417 1.81e-106 325
Msa0469270 AT5G48030.1 39.948 383 208 8 60 432 75 445 3.80e-76 245
Msa0469270 AT1G28210.1 33.994 353 211 6 82 427 48 385 1.15e-57 195
Msa0469270 AT1G28210.3 33.994 353 211 6 82 427 48 385 1.16e-57 195
Msa0469270 AT1G28210.2 33.994 353 211 6 82 427 48 385 1.98e-57 195
Msa0469270 AT5G22060.1 32.676 355 212 10 83 423 15 356 9.33e-43 155
Msa0469270 AT3G44110.1 32.782 363 220 11 83 434 15 364 4.33e-40 149
Msa0469270 AT3G44110.2 32.024 331 203 10 83 402 15 334 4.87e-34 130
Msa0469270 AT3G62600.1 29.577 355 217 11 75 425 19 344 2.08e-30 120
Msa0469270 AT5G01390.1 25.706 354 230 9 81 425 3 332 1.56e-29 118
Msa0469270 AT3G08910.1 27.568 370 190 13 81 425 3 319 2.03e-26 109
Msa0469270 AT3G08970.1 56.250 80 33 1 81 160 26 103 1.62e-20 94.7
Msa0469270 AT3G08970.2 56.250 80 33 1 81 160 26 103 1.62e-20 94.7
Msa0469270 AT5G25530.2 48.039 102 44 3 82 174 4 105 5.38e-20 91.3
Msa0469270 AT4G28480.2 54.054 74 32 1 82 153 4 77 2.73e-18 85.5
Msa0469270 AT4G28480.2 26.897 145 102 3 282 425 147 288 2.90e-11 64.7
Msa0469270 AT2G20560.1 50.000 88 40 2 81 164 3 90 3.39e-18 85.9
Msa0469270 AT2G20560.1 25.185 135 99 2 292 425 202 335 6.52e-12 67.0
Msa0469270 AT4G28480.1 54.054 74 32 1 82 153 4 77 4.69e-18 85.5
Msa0469270 AT5G25530.1 44.545 110 44 4 82 174 4 113 2.03e-17 83.6
Msa0469270 AT1G10350.1 49.333 75 36 1 81 153 3 77 6.52e-17 82.0
Msa0469270 AT1G10350.1 31.538 130 84 4 292 419 213 339 7.73e-11 63.9
Msa0469270 AT5G01390.3 52.778 72 32 1 81 150 3 74 8.03e-17 80.1
Msa0469270 AT5G01390.4 53.521 71 31 1 82 150 4 74 9.81e-17 79.7
Msa0469270 AT5G01390.2 52.778 72 32 1 81 150 3 74 1.46e-16 80.1
Msa0469270 AT3G47940.1 52.703 74 32 1 81 151 3 76 2.51e-16 80.5
Msa0469270 AT3G47940.1 24.865 185 131 5 238 419 160 339 6.52e-12 67.0
Msa0469270 AT1G59725.1 50.000 76 35 1 81 153 3 78 5.16e-16 79.3
Msa0469270 AT1G59725.1 27.692 130 90 3 292 419 194 321 4.76e-11 64.3
Msa0469270 AT1G59980.2 59.375 64 25 1 84 146 25 88 2.41e-15 77.8
Msa0469270 AT5G59610.2 46.753 77 41 0 66 142 57 133 3.29e-15 75.9
Msa0469270 AT1G59980.1 59.375 64 25 1 84 146 25 88 3.70e-15 77.4
Msa0469270 AT5G18140.1 52.381 63 30 0 82 144 77 139 6.25e-15 75.9
Msa0469270 AT1G56300.2 48.529 68 30 2 81 143 12 79 6.81e-15 71.2
Msa0469270 AT5G59610.1 46.753 77 41 0 66 142 57 133 7.98e-15 74.7
Msa0469270 AT5G59610.4 46.753 77 41 0 66 142 57 133 7.98e-15 74.7
Msa0469270 AT5G59610.3 46.753 77 41 0 66 142 57 133 8.72e-15 74.7
Msa0469270 AT5G59610.5 46.753 77 41 0 66 142 57 133 8.72e-15 74.7
Msa0469270 AT1G56300.1 50.000 66 28 2 83 143 14 79 1.56e-14 71.2
Msa0469270 AT2G41000.2 44.086 93 41 3 81 167 2 89 3.28e-14 72.0
Msa0469270 AT3G57340.1 38.095 105 56 2 77 172 108 212 4.38e-14 73.9
Msa0469270 AT3G57340.2 38.095 105 56 2 77 172 108 212 4.38e-14 73.9
Msa0469270 AT5G49060.2 49.315 73 36 1 74 146 92 163 6.00e-14 73.2
Msa0469270 AT5G49060.1 49.315 73 36 1 74 146 92 163 6.00e-14 73.2
Msa0469270 AT5G05750.1 35.185 108 62 1 77 176 109 216 6.19e-14 72.4
Msa0469270 AT2G41000.1 44.565 92 40 3 82 167 3 89 7.97e-14 70.1
Msa0469270 AT1G24120.1 56.061 66 28 1 82 146 20 85 1.15e-13 73.2
Msa0469270 AT1G68370.1 54.286 70 31 1 82 150 17 86 1.90e-13 72.0
Msa0469270 AT5G03160.1 50.769 65 30 1 82 144 370 434 2.97e-13 72.0
Msa0469270 AT4G39150.3 35.833 120 69 3 80 196 4 118 3.00e-13 71.2
Msa0469270 AT4G39150.1 35.833 120 69 3 80 196 4 118 3.00e-13 71.2
Msa0469270 AT4G39150.2 35.833 120 69 3 80 196 4 118 3.00e-13 71.2
Msa0469270 AT4G13830.3 42.683 82 42 2 80 158 64 143 1.98e-12 66.2
Msa0469270 AT2G21510.3 43.836 73 40 1 80 151 4 76 2.10e-12 68.6
Msa0469270 AT2G21510.1 43.836 73 40 1 80 151 4 76 2.10e-12 68.6
Msa0469270 AT4G13830.1 42.683 82 42 2 80 158 64 143 2.20e-12 65.1
Msa0469270 AT2G21510.2 43.836 73 40 1 80 151 4 76 2.28e-12 68.6
Msa0469270 AT2G21510.4 43.836 73 40 1 80 151 4 76 2.28e-12 68.6
Msa0469270 AT2G21510.5 43.836 73 40 1 80 151 4 76 2.38e-12 68.2
Msa0469270 AT5G06910.1 38.043 92 51 2 84 174 31 117 5.55e-12 66.6
Msa0469270 AT4G13830.2 42.683 82 42 2 80 158 64 143 5.76e-12 65.1
Msa0469270 AT1G76700.1 48.611 72 36 1 80 150 4 75 5.86e-12 67.4
Msa0469270 AT5G16650.1 50.000 66 32 1 82 146 11 76 8.25e-12 62.8
Msa0469270 AT2G17880.1 40.909 88 46 3 79 163 65 149 1.22e-11 63.2
Msa0469270 AT2G35720.1 43.836 73 37 1 82 150 15 87 1.27e-11 67.0
Msa0469270 AT1G79940.4 43.210 81 43 2 82 161 99 177 1.63e-11 66.6
Msa0469270 AT5G16650.2 50.794 63 30 1 82 143 11 73 1.67e-11 63.2
Msa0469270 AT1G79940.2 43.210 81 43 2 82 161 99 177 1.92e-11 66.6
Msa0469270 AT1G79940.3 43.210 81 43 2 82 161 99 177 1.92e-11 66.6
Msa0469270 AT1G79940.1 43.210 81 43 2 82 161 99 177 1.92e-11 66.6
Msa0469270 AT1G21080.3 38.542 96 49 2 80 174 4 90 3.27e-11 65.1
Msa0469270 AT4G37480.1 46.154 65 32 1 84 145 58 122 3.35e-11 65.5
Msa0469270 AT1G21080.1 45.833 72 38 1 80 150 4 75 3.55e-11 65.1
Msa0469270 AT5G37380.8 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0469270 AT5G37380.4 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0469270 AT5G37380.7 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0469270 AT5G37380.2 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0469270 AT5G37380.6 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0469270 AT5G37380.1 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0469270 AT5G37380.5 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0469270 AT5G37380.3 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0469270 AT5G37380.9 47.059 68 36 0 77 144 61 128 3.71e-11 65.1
Msa0469270 AT4G09350.1 41.772 79 44 1 67 143 91 169 4.99e-11 63.2
Msa0469270 AT2G25560.1 41.758 91 48 1 76 166 60 145 5.27e-11 65.1
Msa0469270 AT1G72070.1 44.262 61 32 1 73 133 30 88 5.42e-11 60.5
Msa0469270 AT4G36040.1 38.053 113 54 4 38 144 29 131 6.44e-11 61.2
Msa0469270 AT3G12170.2 34.188 117 64 4 66 174 24 135 7.71e-11 63.2
Msa0469270 AT1G72070.2 45.000 60 31 1 73 132 30 87 7.81e-11 58.9

Find 174 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGAAATTTAATATTAAT+TGG 0.181312 3_3:-71054014 Msa0469270:five_prime_UTR
TGGATTCTGGTAGCCGTTTA+AGG 0.182163 3_3:-71049681 Msa0469270:CDS
AGAAATGAAGGGGCATTATT+AGG 0.184726 3_3:-71054648 None:intergenic
ACAGCATTGGATTATATTCT+TGG 0.219663 3_3:-71049045 Msa0469270:three_prime_UTR
TTTGGGGAGGCAGGGCTTAA+AGG 0.247726 3_3:-71050237 Msa0469270:CDS
TTCTCTCTCTAAGATTGTTT+TGG 0.261801 3_3:+71054505 None:intergenic
CGGTCCATATATGACAAATT+TGG 0.261820 3_3:-71050255 Msa0469270:CDS
TCACATCTGGATGATAATTT+CGG 0.265510 3_3:+71050789 None:intergenic
GAAAGAGAAACCTGTGTTAT+AGG 0.266276 3_3:+71054415 None:intergenic
TACAAGCAGGATAAGCTTTA+TGG 0.275354 3_3:-71052444 Msa0469270:CDS
GGTCCATATATGACAAATTT+GGG 0.277603 3_3:-71050254 Msa0469270:CDS
CTCCCCAAATTTGTCATATA+TGG 0.277754 3_3:+71050251 None:intergenic
AATCTTGGGGACTACAATTA+AGG 0.292885 3_3:-71049518 Msa0469270:CDS
AATGAAGCATCCATAATAAA+AGG 0.301948 3_3:+71049216 None:intergenic
CTTAAAGGTTCACCGGGATT+TGG 0.302482 3_3:-71050222 Msa0469270:CDS
GTCTTATATTGATGCAATCT+TGG 0.313538 3_3:-71049533 Msa0469270:CDS
ACCCCTTGCAGTACATGTTC+TGG 0.319612 3_3:-71049757 Msa0469270:CDS
GTTCCAGCCGGTGTGGATTC+TGG 0.326305 3_3:-71049694 Msa0469270:CDS
TTGTAAATGTTTCAGCTTAC+CGG 0.333265 3_3:-71050820 Msa0469270:intron
TCTCGTTTAAGCACGGGATC+CGG 0.337729 3_3:+71049586 None:intergenic
CACATCTGGATGATAATTTC+GGG 0.342735 3_3:+71050790 None:intergenic
TGGTGCAGAAGAGAAATTTA+AGG 0.344525 3_3:-71050403 Msa0469270:CDS
TCTTATATTGATGCAATCTT+GGG 0.353264 3_3:-71049532 Msa0469270:CDS
CAAATCCGCCTATGTCTATA+AGG 0.354679 3_3:+71049164 None:intergenic
TAGATGGCAGTTACACCTTT+TGG 0.356074 3_3:-71053963 Msa0469270:CDS
TTCCAGAGTTACCTTCATTT+CGG 0.363610 3_3:+71049656 None:intergenic
GAAATGAAGGGGCATTATTA+GGG 0.365893 3_3:-71054647 None:intergenic
CTTCATTTCGGACCCTTAAA+CGG 0.373498 3_3:+71049668 None:intergenic
ATTAAGGTTCCGACTGTAGA+TGG 0.378346 3_3:-71049502 Msa0469270:CDS
AGCGACTCAAATAGATCAAA+AGG 0.385091 3_3:+71050084 None:intergenic
GGATTCTGGTAGCCGTTTAA+GGG 0.391936 3_3:-71049680 Msa0469270:CDS
CTTGGCTATTGTGGTGGATC+TGG 0.391953 3_3:+71053896 None:intergenic
TGTGGTACTTGCGATGGTTC+AGG 0.397485 3_3:-71049919 Msa0469270:CDS
TTCATGACCTTGGTATATAT+AGG 0.399180 3_3:-71049195 Msa0469270:three_prime_UTR
ATGTAACACATGTGGTGGTC+AGG 0.403113 3_3:-71049869 Msa0469270:CDS
GGAAGGAGAGGATGAGGAAG+TGG 0.403515 3_3:+71054466 None:intergenic
GATAATTTCGGGCTAGCTTC+CGG 0.405239 3_3:+71050801 None:intergenic
TTATAGGCGCTGCTACTGTT+TGG 0.407252 3_3:+71054431 None:intergenic
AATACTCACTTGTTCACATC+TGG 0.408035 3_3:+71050776 None:intergenic
TATAGGCGCTGCTACTGTTT+GGG 0.408101 3_3:+71054432 None:intergenic
GAAGTTGGAAGGAGAGGATG+AGG 0.414984 3_3:+71054460 None:intergenic
CTCGTTTAAGCACGGGATCC+GGG 0.419118 3_3:+71049587 None:intergenic
TTGAGACTATATATTATAGA+TGG 0.419454 3_3:-71053979 Msa0469270:exon
CAGGACTACTACACCGTCCT+TGG 0.424406 3_3:-71052157 Msa0469270:CDS
GCCAGGATCAACACTTGTTA+TGG 0.430324 3_3:-71049446 Msa0469270:CDS
CAGTACATCAGCTACTCAAT+GGG 0.440441 3_3:-71053940 Msa0469270:CDS
GTGGATTTGAAAATCCCATC+TGG 0.440632 3_3:-71049475 Msa0469270:CDS
CCCCTTGCAGTACATGTTCT+GGG 0.441535 3_3:-71049756 Msa0469270:CDS
TATGACAAATTTGGGGAGGC+AGG 0.442220 3_3:-71050246 Msa0469270:CDS
GTACATGTTCTGGGGATGGC+CGG 0.445163 3_3:-71049747 Msa0469270:CDS
AGAGGGAATGAAAGGGAACT+TGG 0.445557 3_3:+71054534 None:intergenic
CATCTGGATGATTTAGTCCC+TGG 0.446833 3_3:+71049889 None:intergenic
ACTTTATGCTGCAGAGATCC+TGG 0.448540 3_3:-71050423 Msa0469270:intron
TGCTGAATAAGAAGAATATG+AGG 0.451840 3_3:-71049405 Msa0469270:CDS
AGGACTACTACACCGTCCTT+GGG 0.453339 3_3:-71052156 Msa0469270:CDS
ACTGTTTGGGAGAGAGAAGT+TGG 0.461401 3_3:+71054445 None:intergenic
TCTATTTGAGTCGCTATTTG+AGG 0.464753 3_3:-71050076 Msa0469270:CDS
GGAAAGAAAGGTGGTTCTCC+TGG 0.465052 3_3:-71049637 Msa0469270:CDS
TTAGTCAATGTTATTCATGA+AGG 0.465332 3_3:-71049014 Msa0469270:three_prime_UTR
TCTTGATGATGAAATTCCTC+TGG 0.466336 3_3:+71054031 None:intergenic
CTATTTGAGTCGCTATTTGA+GGG 0.470433 3_3:-71050075 Msa0469270:CDS
ACAGAAACAAACCAAACTAA+AGG 0.474632 3_3:-71054581 Msa0469270:five_prime_UTR
TTAAATTTCTCTTCTGCACC+AGG 0.476100 3_3:+71050405 None:intergenic
ACCACCACATGTGTTACATC+TGG 0.476919 3_3:+71049873 None:intergenic
ATCCCATCTGGGACACAGCC+AGG 0.477617 3_3:-71049463 Msa0469270:CDS
CAGAAACAAACCAAACTAAA+GGG 0.478482 3_3:-71054580 Msa0469270:five_prime_UTR
TGCTCGTCTTGCAATGGGAC+TGG 0.478835 3_3:-71049790 Msa0469270:CDS
TGACTTGCTCGTCTTGCAAT+GGG 0.482426 3_3:-71049795 Msa0469270:CDS
GATGATATTTCGTGGGAAGT+TGG 0.483750 3_3:-71049267 Msa0469270:exon
GGTTATAGAGAGGGAATGAA+AGG 0.488566 3_3:+71054526 None:intergenic
CGTTTAAGGGTCCGAAATGA+AGG 0.488601 3_3:-71049667 Msa0469270:CDS
ATGACTTGCTCGTCTTGCAA+TGG 0.491631 3_3:-71049796 Msa0469270:CDS
GCAGTACATCAGCTACTCAA+TGG 0.492349 3_3:-71053941 Msa0469270:CDS
ATGGTCGCAGCAGACAATCT+TGG 0.494344 3_3:-71050047 Msa0469270:CDS
TGCATCGTCGAAGGGGATCA+AGG 0.494975 3_3:-71052355 Msa0469270:CDS
CTACCAGAATCCACACCGGC+TGG 0.495088 3_3:+71049691 None:intergenic
GAAGGTAACTCTGGAAAGAA+AGG 0.495407 3_3:-71049649 Msa0469270:CDS
TGAGTCGCTATTTGAGGGCA+TGG 0.500684 3_3:-71050070 Msa0469270:CDS
AAAGGTTCACCGGGATTTGG+TGG 0.502293 3_3:-71050219 Msa0469270:CDS
GTTCTGGGGATGGCCGGGTG+AGG 0.503033 3_3:-71049741 Msa0469270:CDS
GGATGCTTCATTCATGACCT+TGG 0.503641 3_3:-71049205 Msa0469270:three_prime_UTR
TTTGGGAGAGAGAAGTTGGA+AGG 0.506483 3_3:+71054449 None:intergenic
TGTTGTTCTTGAAGTTATCC+CGG 0.507023 3_3:-71049605 Msa0469270:CDS
TGGAAAAGGAGATAGAGATT+AGG 0.510570 3_3:-71049954 Msa0469270:CDS
GGTGTCTTCTCGTTTAAGCA+CGG 0.510856 3_3:+71049579 None:intergenic
TACATGTTCTGGGGATGGCC+GGG 0.512446 3_3:-71049746 Msa0469270:CDS
AAGGTTCACCGGGATTTGGT+GGG 0.517220 3_3:-71050218 Msa0469270:CDS
TCTTGGAATGGAGCAATGAA+TGG 0.519565 3_3:-71050030 Msa0469270:CDS
GATCCTGGCTGTGTCCCAGA+TGG 0.520139 3_3:+71049460 None:intergenic
GTGTCTTCTCGTTTAAGCAC+GGG 0.522378 3_3:+71049580 None:intergenic
ACTAAATCTGAAATTAAGAC+TGG 0.522708 3_3:-71052118 Msa0469270:intron
TTTCTTGCAGTGCTACAAGC+AGG 0.523918 3_3:-71052457 Msa0469270:intron
GCCATAACAAGTGTTGATCC+TGG 0.524261 3_3:+71049445 None:intergenic
TGCAGTACATGTTCTGGGGA+TGG 0.526866 3_3:-71049751 Msa0469270:CDS
GTGTCTTGATGATGCAAACT+TGG 0.526872 3_3:+71053878 None:intergenic
CACATGTGGTGGTCAGGGAC+GGG 0.527198 3_3:-71049863 Msa0469270:CDS
GGTTCACCGGGATTTGGTGG+GGG 0.527719 3_3:-71050216 Msa0469270:CDS
AAAACTGATTGAGGAACTCT+CGG 0.528888 3_3:-71049323 Msa0469270:CDS
GAGAGAGAAGTTGGAAGGAG+AGG 0.531344 3_3:+71054454 None:intergenic
TTGTTACTCCTTATAGACAT+AGG 0.535142 3_3:-71049172 Msa0469270:three_prime_UTR
TAGTCAATGTTATTCATGAA+GGG 0.536482 3_3:-71049013 Msa0469270:three_prime_UTR
ACATAGGCGGATTTGAAGAA+AGG 0.536912 3_3:-71049156 Msa0469270:three_prime_UTR
TGATGCAAACTTGGCTATTG+TGG 0.538121 3_3:+71053887 None:intergenic
CACTCAAACAAGGACTCCGT+TGG 0.539049 3_3:-71049836 Msa0469270:CDS
ACACTTGTTATGGCAAAGAA+AGG 0.539668 3_3:-71049436 Msa0469270:CDS
TCGCTATTTGAGGGCATGGA+TGG 0.540022 3_3:-71050066 Msa0469270:CDS
ATGACAAATTTGGGGAGGCA+GGG 0.541510 3_3:-71050245 Msa0469270:CDS
ATCAAACTTTGCATCGTCGA+AGG 0.545133 3_3:-71052364 Msa0469270:CDS
ACTCAAACAAGGACTCCGTT+GGG 0.546387 3_3:-71049835 Msa0469270:CDS
CGCAGCAGACAATCTTGGAA+TGG 0.550184 3_3:-71050042 Msa0469270:CDS
TTTACAAGAATATAAAATGT+TGG 0.551313 3_3:+71049558 None:intergenic
ATCCTGGCTGTGTCCCAGAT+GGG 0.551895 3_3:+71049461 None:intergenic
CGGATTTGAAGAAAGGACAT+AGG 0.552842 3_3:-71049149 Msa0469270:three_prime_UTR
CGATGAGAGAAAACTGATTG+AGG 0.553553 3_3:-71049332 Msa0469270:CDS
GTCCGAAATGAAGGTAACTC+TGG 0.554384 3_3:-71049658 Msa0469270:CDS
TCAAACTTTGCATCGTCGAA+GGG 0.557101 3_3:-71052363 Msa0469270:CDS
AGGTTCACCGGGATTTGGTG+GGG 0.558467 3_3:-71050217 Msa0469270:CDS
ACACATGTGGTGGTCAGGGA+CGG 0.560533 3_3:-71049864 Msa0469270:CDS
CCCCAGAACATGTACTGCAA+GGG 0.565096 3_3:+71049755 None:intergenic
GGCAGGGCTTAAAGGTTCAC+CGG 0.569076 3_3:-71050229 Msa0469270:CDS
CGGTATGAGATGATATTTCG+TGG 0.569871 3_3:-71049275 Msa0469270:exon
ATATTCTTCTTATTCAGCAG+AGG 0.569920 3_3:+71049409 None:intergenic
GTTATAGAGAGGGAATGAAA+GGG 0.573436 3_3:+71054527 None:intergenic
GCTGAATAAGAAGAATATGA+GGG 0.578910 3_3:-71049404 Msa0469270:CDS
AGCAAAGGCAAGACTGCCGC+CGG 0.579260 3_3:-71049295 Msa0469270:CDS
GCGACTCAAATAGATCAAAA+GGG 0.582097 3_3:+71050085 None:intergenic
TGTAACACATGTGGTGGTCA+GGG 0.583052 3_3:-71049868 Msa0469270:CDS
TGAACCTATATTAAAACGCA+AGG 0.584026 3_3:+71052388 None:intergenic
TCTTGTCAGATGATGAGAAA+CGG 0.584943 3_3:-71050275 Msa0469270:CDS
TCCCCAGAACATGTACTGCA+AGG 0.589752 3_3:+71049754 None:intergenic
GTAGCTGATGTACTGCCAAA+AGG 0.593984 3_3:+71053948 None:intergenic
AACAAAGCGGATAAGTCTCA+AGG 0.598548 3_3:-71049716 Msa0469270:CDS
GCAGGGCTTAAAGGTTCACC+GGG 0.602555 3_3:-71050228 Msa0469270:CDS
GGTTCCGACTGTAGATGGAA+TGG 0.604592 3_3:-71049497 Msa0469270:CDS
CACGAAATATCATCTCATAC+CGG 0.605585 3_3:+71049276 None:intergenic
GATGGTTCAGGAGCTAAACC+AGG 0.608802 3_3:-71049907 Msa0469270:CDS
GGGAATGAAAGGGAACTTGG+TGG 0.610006 3_3:+71054537 None:intergenic
GGCAAACATTAGTGTAGTGT+AGG 0.612050 3_3:-71054606 Msa0469270:five_prime_UTR
AGAACAACAAAGAGGTCACC+AGG 0.612651 3_3:+71049619 None:intergenic
AGTAGCAGCGCCTATAACAC+AGG 0.612714 3_3:-71054425 Msa0469270:intron
TGGATTTGAAAATCCCATCT+GGG 0.615278 3_3:-71049474 Msa0469270:CDS
CCCAGAACATGTACTGCAAG+GGG 0.617559 3_3:+71049756 None:intergenic
TCTCAAGGTTCCAGCCGGTG+TGG 0.618146 3_3:-71049701 Msa0469270:CDS
ATAAGTCTCAAGGTTCCAGC+CGG 0.620771 3_3:-71049706 Msa0469270:CDS
CTTATATTGATGCAATCTTG+GGG 0.623095 3_3:-71049531 Msa0469270:CDS
GACGGGTTGTCACTCAAACA+AGG 0.625091 3_3:-71049846 Msa0469270:CDS
TGCAAACTTGGCTATTGTGG+TGG 0.627230 3_3:+71053890 None:intergenic
GGTAACTCTGGAAAGAAAGG+TGG 0.630205 3_3:-71049646 Msa0469270:CDS
TTACTCCTTATAGACATAGG+CGG 0.632114 3_3:-71049169 Msa0469270:three_prime_UTR
GAACTCTCGGAGTTGAGCAA+AGG 0.632985 3_3:-71049310 Msa0469270:CDS
GAGAAGTGTGGTACTTGCGA+TGG 0.635595 3_3:-71049925 Msa0469270:CDS
TCCAGATGTAACACATGTGG+TGG 0.637762 3_3:-71049874 Msa0469270:CDS
TCCACCATTCCATCTACAGT+CGG 0.638944 3_3:+71049493 None:intergenic
GGAAATCAGTAATGCGTACG+AGG 0.643998 3_3:-71050382 Msa0469270:intron
GGACTACTACACCGTCCTTG+GGG 0.645334 3_3:-71052155 Msa0469270:CDS
CCCTTGCAGTACATGTTCTG+GGG 0.646072 3_3:-71049755 Msa0469270:CDS
TAACTTCAAGAACAACAAAG+AGG 0.649565 3_3:+71049611 None:intergenic
GACTGCTGAAAGATACCCAA+CGG 0.649757 3_3:+71049820 None:intergenic
CAAACTTTGCATCGTCGAAG+GGG 0.657260 3_3:-71052362 Msa0469270:CDS
CATATATGACAAATTTGGGG+AGG 0.659382 3_3:-71050250 Msa0469270:CDS
GGTATGAGATGATATTTCGT+GGG 0.660372 3_3:-71049274 Msa0469270:exon
TCCGACTGTAGATGGAATGG+TGG 0.660929 3_3:-71049494 Msa0469270:CDS
GTCCATATATGACAAATTTG+GGG 0.662707 3_3:-71050253 Msa0469270:CDS
CTGAATAAGAAGAATATGAG+GGG 0.668517 3_3:-71049403 Msa0469270:CDS
TCATCCAGATGTAACACATG+TGG 0.669998 3_3:-71049877 Msa0469270:CDS
GTGGATCTGGCAACAATCTG+AGG 0.677214 3_3:+71053909 None:intergenic
GTAACAACCTATATATACCA+AGG 0.685901 3_3:+71049188 None:intergenic
ATTAGGCGACTAGAGAAGTG+TGG 0.694061 3_3:-71049937 Msa0469270:CDS
GGGTTCTAGAAAGAGCGACA+AGG 0.694756 3_3:-71054627 Msa0469270:five_prime_UTR
ATGGTTCAGGAGCTAAACCA+GGG 0.708190 3_3:-71049906 Msa0469270:CDS
GCCGGGTGAGGAAAACAAAG+CGG 0.718931 3_3:-71049729 Msa0469270:CDS
AGTACATCAGCTACTCAATG+GGG 0.725170 3_3:-71053939 Msa0469270:CDS
GAAATATCATCTCATACCGG+CGG 0.725473 3_3:+71049279 None:intergenic
ACGGCTACCAGAATCCACAC+CGG 0.739891 3_3:+71049687 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAGAAATTTAATATTAAT+TGG - chr3_3:71049608-71049627 Msa0469270:CDS 10.0%
!! CTTGTAAAAAAAATATAAAA+AGG + chr3_3:71051356-71051375 None:intergenic 10.0%
!!! CTTTTTATATTTTTTTTACA+AGG - chr3_3:71051354-71051373 Msa0469270:intron 10.0%
!!! AATTTTGAAAATTTCAAATT+TGG + chr3_3:71052470-71052489 None:intergenic 10.0%
!!! ATTTTATTTTCCTTTTATTA+TGG - chr3_3:71054396-71054415 Msa0469270:intron 10.0%
!!! TTATTTATTTTCAATAACCA+AGG - chr3_3:71049377-71049396 Msa0469270:CDS 15.0%
!! TATATTTCATATTCATCAAA+TGG + chr3_3:71050547-71050566 None:intergenic 15.0%
!! TTAAATGTAAAAAATCCTAA+AGG - chr3_3:71050683-71050702 Msa0469270:intron 15.0%
!!! ATTTTCATTCTTCTAAAATA+CGG - chr3_3:71050746-71050765 Msa0469270:intron 15.0%
!!! AAAAAAAACAGAAAAAGTAT+GGG + chr3_3:71050816-71050835 None:intergenic 15.0%
!! AAAAAAAAACAGAAAAAGTA+TGG + chr3_3:71050817-71050836 None:intergenic 15.0%
!!! TCTGTTTTTTTTTTTAACTT+AGG - chr3_3:71050824-71050843 Msa0469270:intron 15.0%
!! CAAGAGTTATATAATATAAA+AGG + chr3_3:71051648-71051667 None:intergenic 15.0%
!! TATTAAATGAGATAATCATT+CGG + chr3_3:71052219-71052238 None:intergenic 15.0%
!!! TTTCATTTCACTTTTTTTTT+TGG - chr3_3:71052627-71052646 Msa0469270:intron 15.0%
!! TTTACAAGAATATAAAATGT+TGG + chr3_3:71054067-71054086 None:intergenic 15.0%
!!! TTACATTTTAGTTATATTCT+TGG - chr3_3:71054541-71054560 Msa0469270:five_prime_UTR 15.0%
!! AGATGTTTGAATATTTGAAT+TGG + chr3_3:71049249-71049268 None:intergenic 20.0%
!! TTGAGACTATATATTATAGA+TGG - chr3_3:71049643-71049662 Msa0469270:CDS 20.0%
!!! ATTTTGTTTCTCTTGTTTAT+TGG - chr3_3:71049797-71049816 Msa0469270:CDS 20.0%
!!! TTTTATACCGAACTTTTTTA+TGG + chr3_3:71049879-71049898 None:intergenic 20.0%
!! AGTAAATGTGAATAATTAAG+CGG + chr3_3:71050269-71050288 None:intergenic 20.0%
!!! TTTTTCTCAATCAATTCTTT+AGG - chr3_3:71050431-71050450 Msa0469270:intron 20.0%
!!! TTTTCTCAATCAATTCTTTA+GGG - chr3_3:71050432-71050451 Msa0469270:intron 20.0%
!! ATGAATTTGAAGAATCAAAT+AGG - chr3_3:71050652-71050671 Msa0469270:intron 20.0%
!!! GGATTTTTTACATTTAACAA+TGG + chr3_3:71050680-71050699 None:intergenic 20.0%
!!! TTTTAGAAGAATGAAAATAG+AGG + chr3_3:71050744-71050763 None:intergenic 20.0%
!! TACTAATAAAATGTTTGTGA+AGG - chr3_3:71051702-71051721 Msa0469270:intron 20.0%
!!! TTAATTCTTGTTCTATGTTT+TGG + chr3_3:71051782-71051801 None:intergenic 20.0%
!!! ATTTTGTTTAATGCCAAAAA+AGG - chr3_3:71052421-71052440 Msa0469270:CDS 20.0%
!! TGAAAATTTCAAATTTGGTT+TGG + chr3_3:71052465-71052484 None:intergenic 20.0%
!!! TAAATGTTTAGTTTGAACTT+CGG + chr3_3:71052607-71052626 None:intergenic 20.0%
!! AATTATGCAACTAGAAATTA+TGG + chr3_3:71053116-71053135 None:intergenic 20.0%
!!! TTGCATAATTTTTTTTCACA+TGG - chr3_3:71053126-71053145 Msa0469270:intron 20.0%
!! TAAAGTGAATACACATATAT+AGG + chr3_3:71053185-71053204 None:intergenic 20.0%
!! TTAAAATTCTCCATAATCTT+TGG + chr3_3:71053458-71053477 None:intergenic 20.0%
!! TGTAAAATCTTTGTGATTAT+AGG - chr3_3:71053504-71053523 Msa0469270:intron 20.0%
! ATCCAATCTATCAATAATGA+AGG + chr3_3:71049316-71049335 None:intergenic 25.0%
! ATTATCAGAAACTAAGATGT+CGG - chr3_3:71049959-71049978 Msa0469270:CDS 25.0%
!! TGATTTTATTGAAGTTCCAA+AGG + chr3_3:71050154-71050173 None:intergenic 25.0%
! TTGGAACTTCAATAAAATCA+CGG - chr3_3:71050154-71050173 Msa0469270:intron 25.0%
! TAAATGTGAATAATTAAGCG+GGG + chr3_3:71050267-71050286 None:intergenic 25.0%
! GTAAATGTGAATAATTAAGC+GGG + chr3_3:71050268-71050287 None:intergenic 25.0%
! TCAAATTCATTGATGAGAAT+TGG + chr3_3:71050642-71050661 None:intergenic 25.0%
!!! AGAGGCATTGAATATTAAAT+AGG + chr3_3:71050726-71050745 None:intergenic 25.0%
!! TAATGCAGTGATTTAAAATG+AGG + chr3_3:71050900-71050919 None:intergenic 25.0%
! TAGATATTCAGCCAATATAT+TGG + chr3_3:71051430-71051449 None:intergenic 25.0%
!! ACTAAATCTGAAATTAAGAC+TGG - chr3_3:71051504-71051523 Msa0469270:intron 25.0%
! ACGTAAATACAGAAGAATTT+AGG + chr3_3:71051980-71051999 None:intergenic 25.0%
!!! TTTTTTTTGGTAATCAATGC+AGG - chr3_3:71052640-71052659 Msa0469270:intron 25.0%
! TATCAGAAACATCAATTACT+CGG - chr3_3:71052689-71052708 Msa0469270:intron 25.0%
! TAGAAAAGGAAAAAAAGAGT+GGG + chr3_3:71052932-71052951 None:intergenic 25.0%
! TTAGAAAAGGAAAAAAAGAG+TGG + chr3_3:71052933-71052952 None:intergenic 25.0%
! TTGGAGTTAAAGATTAGAAA+AGG + chr3_3:71052946-71052965 None:intergenic 25.0%
! TATGAACTAACCATGAATTA+GGG + chr3_3:71053295-71053314 None:intergenic 25.0%
! TTATGAACTAACCATGAATT+AGG + chr3_3:71053296-71053315 None:intergenic 25.0%
!! ATGTAACTATAATCCTTTTC+AGG - chr3_3:71053324-71053343 Msa0469270:intron 25.0%
!!! AACTTTAAAGAAGCTGTTTT+CGG - chr3_3:71053643-71053662 Msa0469270:intron 25.0%
! TCTTATATTGATGCAATCTT+GGG - chr3_3:71054090-71054109 Msa0469270:intron 25.0%
!! AATGAAGCATCCATAATAAA+AGG + chr3_3:71054409-71054428 None:intergenic 25.0%
! TTAGTCAATGTTATTCATGA+AGG - chr3_3:71054608-71054627 Msa0469270:five_prime_UTR 25.0%
! TAGTCAATGTTATTCATGAA+GGG - chr3_3:71054609-71054628 Msa0469270:five_prime_UTR 25.0%
ACAGAAACAAACCAAACTAA+AGG - chr3_3:71049041-71049060 Msa0469270:three_prime_UTR 30.0%
CAGAAACAAACCAAACTAAA+GGG - chr3_3:71049042-71049061 Msa0469270:three_prime_UTR 30.0%
! TCTTCTTTTACCCTTTAGTT+TGG + chr3_3:71049055-71049074 None:intergenic 30.0%
!!! GATTGTTTTGGTTATAGAGA+GGG + chr3_3:71049108-71049127 None:intergenic 30.0%
!!! AGATTGTTTTGGTTATAGAG+AGG + chr3_3:71049109-71049128 None:intergenic 30.0%
!!! TTCTCTCTCTAAGATTGTTT+TGG + chr3_3:71049120-71049139 None:intergenic 30.0%
CTCCTTCATTATTGATAGAT+TGG - chr3_3:71049311-71049330 Msa0469270:CDS 30.0%
TGAATTAAGATAAGAAGCCT+TGG + chr3_3:71049397-71049416 None:intergenic 30.0%
GTAATTCATTACTCATGACT+AGG - chr3_3:71049491-71049510 Msa0469270:CDS 30.0%
!! CAACAAAAAGCACTTATTTC+CGG + chr3_3:71049536-71049555 None:intergenic 30.0%
!!! TTAATTTTTTTTGCAGCCAG+AGG - chr3_3:71049575-71049594 Msa0469270:CDS 30.0%
TTTATCTGTCATATTGTCAC+CGG - chr3_3:71049847-71049866 Msa0469270:CDS 30.0%
!!! AACTTTTTTATGGCTATAGC+CGG + chr3_3:71049869-71049888 None:intergenic 30.0%
GCTATAGCCATAAAAAAGTT+CGG - chr3_3:71049869-71049888 Msa0469270:CDS 30.0%
TTATTGAAGTTCCAAAGGTT+GGG + chr3_3:71050149-71050168 None:intergenic 30.0%
TTTATTGAAGTTCCAAAGGT+TGG + chr3_3:71050150-71050169 None:intergenic 30.0%
ACACAAGAATCAATTCTACT+TGG + chr3_3:71050240-71050259 None:intergenic 30.0%
!! GATACAGATTTTAGAAGAGA+CGG + chr3_3:71050328-71050347 None:intergenic 30.0%
AAAACCAGACAATTGACTAA+TGG + chr3_3:71050414-71050433 None:intergenic 30.0%
!! TTCATTCTTCTAAAATACGG+AGG - chr3_3:71050749-71050768 Msa0469270:intron 30.0%
!! TCATTCTTCTAAAATACGGA+GGG - chr3_3:71050750-71050769 Msa0469270:intron 30.0%
ATTGTGATTAAATTGCGTTG+TGG - chr3_3:71050871-71050890 Msa0469270:intron 30.0%
TTGTGATTAAATTGCGTTGT+GGG - chr3_3:71050872-71050891 Msa0469270:intron 30.0%
AAAACTGTTCCTAATGAGTA+AGG + chr3_3:71051099-71051118 None:intergenic 30.0%
!! GATTCCTTGCGTTTTAATAT+AGG - chr3_3:71051230-71051249 Msa0469270:intron 30.0%
TGAACCTATATTAAAACGCA+AGG + chr3_3:71051237-71051256 None:intergenic 30.0%
TCAAGAAGAATACTTTCACA+AGG + chr3_3:71051383-71051402 None:intergenic 30.0%
!! GAAAGTATTCTTCTTGAAGT+TGG - chr3_3:71051386-71051405 Msa0469270:intron 30.0%
ACTATGACCATCCAATATAT+TGG - chr3_3:71051416-71051435 Msa0469270:intron 30.0%
TATTCAGCCAATATATTGGA+TGG + chr3_3:71051426-71051445 None:intergenic 30.0%
AAATCATAACAGTCAGAGAA+GGG + chr3_3:71051544-71051563 None:intergenic 30.0%
! ATCACAGCTTTGATAACAAA+TGG + chr3_3:71051870-71051889 None:intergenic 30.0%
TCCTAATCATTCGTAGTTAA+CGG + chr3_3:71051933-71051952 None:intergenic 30.0%
TTGCTTTACAACATACAACA+AGG + chr3_3:71052131-71052150 None:intergenic 30.0%
ATACAAAGATTTGTAACTGC+AGG - chr3_3:71052183-71052202 Msa0469270:intron 30.0%
TACAAAGATTTGTAACTGCA+GGG - chr3_3:71052184-71052203 Msa0469270:intron 30.0%
ATGAGATAATCATTCGGATT+TGG + chr3_3:71052213-71052232 None:intergenic 30.0%
CTTAATACCAATACTGAAGA+AGG - chr3_3:71052261-71052280 Msa0469270:intron 30.0%
TTCAGATAAAATGTCTGTGA+AGG - chr3_3:71052284-71052303 Msa0469270:intron 30.0%
ACAAAATAAACAGCCGTTTA+GGG + chr3_3:71052408-71052427 None:intergenic 30.0%
AACAAAATAAACAGCCGTTT+AGG + chr3_3:71052409-71052428 None:intergenic 30.0%
TTTAATGCCAAAAAAGGACA+TGG - chr3_3:71052427-71052446 Msa0469270:CDS 30.0%
TTAATGCCAAAAAAGGACAT+GGG - chr3_3:71052428-71052447 Msa0469270:CDS 30.0%
ATCAGAAACATCAATTACTC+GGG - chr3_3:71052690-71052709 Msa0469270:intron 30.0%
TAACAATGCAATGATACCAT+GGG + chr3_3:71052772-71052791 None:intergenic 30.0%
TTAACAATGCAATGATACCA+TGG + chr3_3:71052773-71052792 None:intergenic 30.0%
TTGTAAATGTTTCAGCTTAC+CGG - chr3_3:71052802-71052821 Msa0469270:intron 30.0%
TCACATCTGGATGATAATTT+CGG + chr3_3:71052836-71052855 None:intergenic 30.0%
AGAAAGCAGATAACTTCAAT+GGG + chr3_3:71052887-71052906 None:intergenic 30.0%
TAGAAAGCAGATAACTTCAA+TGG + chr3_3:71052888-71052907 None:intergenic 30.0%
GGTCCATATATGACAAATTT+GGG - chr3_3:71053368-71053387 Msa0469270:intron 30.0%
GTCCATATATGACAAATTTG+GGG - chr3_3:71053369-71053388 Msa0469270:intron 30.0%
AAATTCTCCATAATCTTTGG+AGG + chr3_3:71053455-71053474 None:intergenic 30.0%
TAACTTCAAGAACAACAAAG+AGG + chr3_3:71054014-71054033 None:intergenic 30.0%
GTCTTATATTGATGCAATCT+TGG - chr3_3:71054089-71054108 Msa0469270:intron 30.0%
CTTATATTGATGCAATCTTG+GGG - chr3_3:71054091-71054110 Msa0469270:intron 30.0%
ATATTCTTCTTATTCAGCAG+AGG + chr3_3:71054216-71054235 None:intergenic 30.0%
TGCTGAATAAGAAGAATATG+AGG - chr3_3:71054217-71054236 Msa0469270:intron 30.0%
GCTGAATAAGAAGAATATGA+GGG - chr3_3:71054218-71054237 Msa0469270:intron 30.0%
CTGAATAAGAAGAATATGAG+GGG - chr3_3:71054219-71054238 Msa0469270:intron 30.0%
TTCATGACCTTGGTATATAT+AGG - chr3_3:71054427-71054446 Msa0469270:five_prime_UTR 30.0%
GTAACAACCTATATATACCA+AGG + chr3_3:71054437-71054456 None:intergenic 30.0%
TTGTTACTCCTTATAGACAT+AGG - chr3_3:71054450-71054469 Msa0469270:five_prime_UTR 30.0%
!! TCATCTATTGCTTGTTTTCT+TGG - chr3_3:71054515-71054534 Msa0469270:five_prime_UTR 30.0%
!!! ATGTTGTTTTTTGACAGCAT+TGG - chr3_3:71054564-71054583 Msa0469270:five_prime_UTR 30.0%
! ACAGCATTGGATTATATTCT+TGG - chr3_3:71054577-71054596 Msa0469270:five_prime_UTR 30.0%
GTTATAGAGAGGGAATGAAA+GGG + chr3_3:71049098-71049117 None:intergenic 35.0%
GAAAGAGAAACCTGTGTTAT+AGG + chr3_3:71049210-71049229 None:intergenic 35.0%
!! TTCATTTTTACCTTCTGCTC+CGG - chr3_3:71049514-71049533 Msa0469270:CDS 35.0%
!! TCTTGATGATGAAATTCCTC+TGG + chr3_3:71049594-71049613 None:intergenic 35.0%
TACCGGAGTTGAGAAAAAAT+GGG - chr3_3:71050021-71050040 Msa0469270:CDS 35.0%
! TTGTAATTTTGCCCAACCTT+TGG - chr3_3:71050135-71050154 Msa0469270:intron 35.0%
CTGAAAAATTCCACTTCTCT+TGG + chr3_3:71050208-71050227 None:intergenic 35.0%
!! AGATTTTAGAAGAGACGGTT+TGG + chr3_3:71050323-71050342 None:intergenic 35.0%
TAAAATCTGTATCAATCGCC+TGG - chr3_3:71050335-71050354 Msa0469270:intron 35.0%
GATTCCATTAGTCAATTGTC+TGG - chr3_3:71050407-71050426 Msa0469270:CDS 35.0%
ATCCATGAAATCGCACAAAT+TGG - chr3_3:71050491-71050510 Msa0469270:intron 35.0%
TACCAATTTGTGCGATTTCA+TGG + chr3_3:71050496-71050515 None:intergenic 35.0%
CAACTCACTATTCAGATGTT+AGG - chr3_3:71050998-71051017 Msa0469270:intron 35.0%
AGCACTGCAAGAAAAATGAT+TGG + chr3_3:71051159-71051178 None:intergenic 35.0%
TACAAGCAGGATAAGCTTTA+TGG - chr3_3:71051178-71051197 Msa0469270:intron 35.0%
AGCAAAAAAGGTTGAACTTG+GGG + chr3_3:71051207-71051226 None:intergenic 35.0%
GAGCAAAAAAGGTTGAACTT+GGG + chr3_3:71051208-71051227 None:intergenic 35.0%
!!! CAAGTTCAACCTTTTTTGCT+CGG - chr3_3:71051207-71051226 Msa0469270:intron 35.0%
!!! AAGTTCAACCTTTTTTGCTC+GGG - chr3_3:71051208-71051227 Msa0469270:intron 35.0%
!!! TAGAATTTTTTGACACCCCA+AGG + chr3_3:71051485-71051504 None:intergenic 35.0%
CAAATCATAACAGTCAGAGA+AGG + chr3_3:71051545-71051564 None:intergenic 35.0%
AACGCATCAACTAATGATGA+TGG + chr3_3:71051571-71051590 None:intergenic 35.0%
TCTTGACAGAGTTAACTGTT+AGG + chr3_3:71051753-71051772 None:intergenic 35.0%
TCCGTTAACTACGAATGATT+AGG - chr3_3:71051929-71051948 Msa0469270:intron 35.0%
AACTACGAATGATTAGGATC+AGG - chr3_3:71051935-71051954 Msa0469270:intron 35.0%
ACTACGAATGATTAGGATCA+GGG - chr3_3:71051936-71051955 Msa0469270:intron 35.0%
! TGTAATCTTTTGCCTAGATG+CGG - chr3_3:71052157-71052176 Msa0469270:CDS 35.0%
ATCTGAACCTTCTTCAGTAT+TGG + chr3_3:71052271-71052290 None:intergenic 35.0%
TAGCAACAAGCATTATCAAG+TGG + chr3_3:71052361-71052380 None:intergenic 35.0%
CAAAATAAACAGCCGTTTAG+GGG + chr3_3:71052407-71052426 None:intergenic 35.0%
TAATGCCAAAAAAGGACATG+GGG - chr3_3:71052429-71052448 Msa0469270:CDS 35.0%
TAATCGTCTTGATTGCTCTT+TGG - chr3_3:71052489-71052508 Msa0469270:intron 35.0%
!!! ACGTACAAGGATTCTAGTTT+TGG + chr3_3:71052553-71052572 None:intergenic 35.0%
AAAACTAGAATCCTTGTACG+TGG - chr3_3:71052552-71052571 Msa0469270:intron 35.0%
! TTTGGTAATCAATGCAGGAA+AGG - chr3_3:71052645-71052664 Msa0469270:intron 35.0%
TAATCAATGCAGGAAAGGTT+TGG - chr3_3:71052650-71052669 Msa0469270:intron 35.0%
GATGCTATGTGTGATTTACT+TGG - chr3_3:71052733-71052752 Msa0469270:intron 35.0%
AACAATGCAATGATACCATG+GGG + chr3_3:71052771-71052790 None:intergenic 35.0%
CACATCTGGATGATAATTTC+GGG + chr3_3:71052835-71052854 None:intergenic 35.0%
AATACTCACTTGTTCACATC+TGG + chr3_3:71052849-71052868 None:intergenic 35.0%
CTCCAATTTCACTATTGCTA+TGG - chr3_3:71052960-71052979 Msa0469270:intron 35.0%
GTCCATAGCAATAGTGAAAT+TGG + chr3_3:71052965-71052984 None:intergenic 35.0%
CACTATTGCTATGGACAAAA+TGG - chr3_3:71052969-71052988 Msa0469270:intron 35.0%
! TTGGTATAATCTAAGACACC+CGG + chr3_3:71052996-71053015 None:intergenic 35.0%
ACTAGAAATTATGGCATGAC+AGG + chr3_3:71053107-71053126 None:intergenic 35.0%
TTAAATTTCTCTTCTGCACC+AGG + chr3_3:71053220-71053239 None:intergenic 35.0%
TGGTGCAGAAGAGAAATTTA+AGG - chr3_3:71053219-71053238 Msa0469270:intron 35.0%
TCTTGTCAGATGATGAGAAA+CGG - chr3_3:71053347-71053366 Msa0469270:intron 35.0%
CGGTCCATATATGACAAATT+TGG - chr3_3:71053367-71053386 Msa0469270:intron 35.0%
CTCCCCAAATTTGTCATATA+TGG + chr3_3:71053374-71053393 None:intergenic 35.0%
CATATATGACAAATTTGGGG+AGG - chr3_3:71053372-71053391 Msa0469270:intron 35.0%
CAAGTTACCTCCAAAGATTA+TGG - chr3_3:71053445-71053464 Msa0469270:intron 35.0%
GCGACTCAAATAGATCAAAA+GGG + chr3_3:71053540-71053559 None:intergenic 35.0%
AGCGACTCAAATAGATCAAA+AGG + chr3_3:71053541-71053560 None:intergenic 35.0%
TCTATTTGAGTCGCTATTTG+AGG - chr3_3:71053546-71053565 Msa0469270:intron 35.0%
CTATTTGAGTCGCTATTTGA+GGG - chr3_3:71053547-71053566 Msa0469270:intron 35.0%
TGGAAAAGGAGATAGAGATT+AGG - chr3_3:71053668-71053687 Msa0469270:intron 35.0%
TGTTGTTCTTGAAGTTATCC+CGG - chr3_3:71054017-71054036 Msa0469270:five_prime_UTR 35.0%
AATCTTGGGGACTACAATTA+AGG - chr3_3:71054104-71054123 Msa0469270:intron 35.0%
TGGATTTGAAAATCCCATCT+GGG - chr3_3:71054148-71054167 Msa0469270:intron 35.0%
!! ACACTTGTTATGGCAAAGAA+AGG - chr3_3:71054186-71054205 Msa0469270:intron 35.0%
AAAACTGATTGAGGAACTCT+CGG - chr3_3:71054299-71054318 Msa0469270:intron 35.0%
CACGAAATATCATCTCATAC+CGG + chr3_3:71054349-71054368 None:intergenic 35.0%
GGTATGAGATGATATTTCGT+GGG - chr3_3:71054348-71054367 Msa0469270:intron 35.0%
TTACTCCTTATAGACATAGG+CGG - chr3_3:71054453-71054472 Msa0469270:five_prime_UTR 35.0%
GGCAAACATTAGTGTAGTGT+AGG - chr3_3:71049016-71049035 Msa0469270:three_prime_UTR 40.0%
GGTTATAGAGAGGGAATGAA+AGG + chr3_3:71049099-71049118 None:intergenic 40.0%
! TAGATGGCAGTTACACCTTT+TGG - chr3_3:71049659-71049678 Msa0469270:CDS 40.0%
CAGTACATCAGCTACTCAAT+GGG - chr3_3:71049682-71049701 Msa0469270:CDS 40.0%
AGTACATCAGCTACTCAATG+GGG - chr3_3:71049683-71049702 Msa0469270:CDS 40.0%
TGATGCAAACTTGGCTATTG+TGG + chr3_3:71049738-71049757 None:intergenic 40.0%
!! GTGTCTTGATGATGCAAACT+TGG + chr3_3:71049747-71049766 None:intergenic 40.0%
AGAAACTAAGATGTCGGCAA+GGG - chr3_3:71049965-71049984 Msa0469270:CDS 40.0%
GTTCAGGGTTTAACCAAAAC+AGG + chr3_3:71049998-71050017 None:intergenic 40.0%
!!! CATTTTTTCTCAACTCCGGT+AGG + chr3_3:71050022-71050041 None:intergenic 40.0%
CTACCGGAGTTGAGAAAAAA+TGG - chr3_3:71050020-71050039 Msa0469270:CDS 40.0%
ACCGGAGTTGAGAAAAAATG+GGG - chr3_3:71050022-71050041 Msa0469270:CDS 40.0%
!!! ACCCCATTTTTTCTCAACTC+CGG + chr3_3:71050026-71050045 None:intergenic 40.0%
GTTGAAGTGCATGTTGAGAA+CGG - chr3_3:71050082-71050101 Msa0469270:CDS 40.0%
!! TTAGAAGAGACGGTTTGGTT+TGG + chr3_3:71050318-71050337 None:intergenic 40.0%
CCTAATGAGTAAGGATCTGT+TGG + chr3_3:71051090-71051109 None:intergenic 40.0%
CCAACAGATCCTTACTCATT+AGG - chr3_3:71051087-71051106 Msa0469270:intron 40.0%
CGAGCAAAAAAGGTTGAACT+TGG + chr3_3:71051209-71051228 None:intergenic 40.0%
ATCAAACTTTGCATCGTCGA+AGG - chr3_3:71051258-71051277 Msa0469270:intron 40.0%
TCAAACTTTGCATCGTCGAA+GGG - chr3_3:71051259-71051278 Msa0469270:intron 40.0%
!!! ATTTTTTGACACCCCAAGGA+CGG + chr3_3:71051481-71051500 None:intergenic 40.0%
!! GCATCAACTAATGATGATGG+AGG + chr3_3:71051568-71051587 None:intergenic 40.0%
!! TTAACGGACTAAGGCTAATG+TGG + chr3_3:71051917-71051936 None:intergenic 40.0%
!! CATTCGTAGTTAACGGACTA+AGG + chr3_3:71051926-71051945 None:intergenic 40.0%
AAACATCTTTCGAGAGAGAG+AGG - chr3_3:71052000-71052019 Msa0469270:intron 40.0%
AACATCTTTCGAGAGAGAGA+GGG - chr3_3:71052001-71052020 Msa0469270:intron 40.0%
! GTAATCTTTTGCCTAGATGC+GGG - chr3_3:71052158-71052177 Msa0469270:intron 40.0%
AATGCCAAAAAAGGACATGG+GGG - chr3_3:71052430-71052449 Msa0469270:CDS 40.0%
CTCTTTGGTATTGTATTGCG+AGG - chr3_3:71052504-71052523 Msa0469270:intron 40.0%
ACAATGCAATGATACCATGG+GGG + chr3_3:71052770-71052789 None:intergenic 40.0%
GATAACTTCAATGGGAAGTG+AGG + chr3_3:71052879-71052898 None:intergenic 40.0%
TTGCTATGGACAAAATGGTC+CGG - chr3_3:71052974-71052993 Msa0469270:intron 40.0%
AAATGACATGCTGCAAGCAT+TGG + chr3_3:71053015-71053034 None:intergenic 40.0%
CTTCATCTAACAGGCAATTC+AGG + chr3_3:71053061-71053080 None:intergenic 40.0%
GCTAAACGACTTCATCTAAC+AGG + chr3_3:71053070-71053089 None:intergenic 40.0%
ACACAACTGACCCTAATTCA+TGG - chr3_3:71053282-71053301 Msa0469270:intron 40.0%
TCATCTGACAAGACCTGAAA+AGG + chr3_3:71053340-71053359 None:intergenic 40.0%
TCTTGGAATGGAGCAATGAA+TGG - chr3_3:71053592-71053611 Msa0469270:intron 40.0%
!! TAAAGAAGCTGTTTTCGGAG+TGG - chr3_3:71053648-71053667 Msa0469270:intron 40.0%
TCATCCAGATGTAACACATG+TGG - chr3_3:71053745-71053764 Msa0469270:intron 40.0%
AACAAAGCGGATAAGTCTCA+AGG - chr3_3:71053906-71053925 Msa0469270:CDS 40.0%
CTTCATTTCGGACCCTTAAA+CGG + chr3_3:71053957-71053976 None:intergenic 40.0%
ATTAAGGTTCCGACTGTAGA+TGG - chr3_3:71054120-71054139 Msa0469270:intron 40.0%
GTGGATTTGAAAATCCCATC+TGG - chr3_3:71054147-71054166 Msa0469270:intron 40.0%
!!! TCATCGCTGCTCAGTTTTTT+AGG + chr3_3:71054276-71054295 None:intergenic 40.0%
CGATGAGAGAAAACTGATTG+AGG - chr3_3:71054290-71054309 Msa0469270:intron 40.0%
GAAATATCATCTCATACCGG+CGG + chr3_3:71054346-71054365 None:intergenic 40.0%
CGGTATGAGATGATATTTCG+TGG - chr3_3:71054347-71054366 Msa0469270:intron 40.0%
GATGATATTTCGTGGGAAGT+TGG - chr3_3:71054355-71054374 Msa0469270:intron 40.0%
CAAATCCGCCTATGTCTATA+AGG + chr3_3:71054461-71054480 None:intergenic 40.0%
! ACATAGGCGGATTTGAAGAA+AGG - chr3_3:71054466-71054485 Msa0469270:five_prime_UTR 40.0%
CGGATTTGAAGAAAGGACAT+AGG - chr3_3:71054473-71054492 Msa0469270:five_prime_UTR 40.0%
AGAGGGAATGAAAGGGAACT+TGG + chr3_3:71049091-71049110 None:intergenic 45.0%
TTTGGGAGAGAGAAGTTGGA+AGG + chr3_3:71049176-71049195 None:intergenic 45.0%
ACTGTTTGGGAGAGAGAAGT+TGG + chr3_3:71049180-71049199 None:intergenic 45.0%
! TATAGGCGCTGCTACTGTTT+GGG + chr3_3:71049193-71049212 None:intergenic 45.0%
! TTATAGGCGCTGCTACTGTT+TGG + chr3_3:71049194-71049213 None:intergenic 45.0%
GTAGCTGATGTACTGCCAAA+AGG + chr3_3:71049677-71049696 None:intergenic 45.0%
GCAGTACATCAGCTACTCAA+TGG - chr3_3:71049681-71049700 Msa0469270:CDS 45.0%
TGCAAACTTGGCTATTGTGG+TGG + chr3_3:71049735-71049754 None:intergenic 45.0%
GAGCTGCTATAGCTGACAAT+TGG + chr3_3:71049918-71049937 None:intergenic 45.0%
AGCTATAGCAGCTCTACTTC+TGG - chr3_3:71049924-71049943 Msa0469270:CDS 45.0%
CAGAAACTAAGATGTCGGCA+AGG - chr3_3:71049964-71049983 Msa0469270:CDS 45.0%
! CAAGGGCTTATTGCCTGTTT+TGG - chr3_3:71049982-71050001 Msa0469270:CDS 45.0%
GTTAAACCCTGAACTCCTAC+CGG - chr3_3:71050004-71050023 Msa0469270:CDS 45.0%
GTTGAGAACGGCAATGAGTT+TGG - chr3_3:71050094-71050113 Msa0469270:CDS 45.0%
CAATGAGTTTGGCAGTGTCA+CGG - chr3_3:71050105-71050124 Msa0469270:intron 45.0%
AAACTCACTGCCAAGAGAAG+TGG - chr3_3:71050195-71050214 Msa0469270:intron 45.0%
TCTTGCTCACCTTTGCATCT+AGG - chr3_3:71050361-71050380 Msa0469270:intron 45.0%
ACATCGTGTCCTAGATGCAA+AGG + chr3_3:71050373-71050392 None:intergenic 45.0%
GTGTTGAGTAGTGCTCCTTT+AGG + chr3_3:71050701-71050720 None:intergenic 45.0%
TTTCTTGCAGTGCTACAAGC+AGG - chr3_3:71051165-71051184 Msa0469270:intron 45.0%
CAAGGAATCCCGAGCAAAAA+AGG + chr3_3:71051219-71051238 None:intergenic 45.0%
CAAACTTTGCATCGTCGAAG+GGG - chr3_3:71051260-71051279 Msa0469270:intron 45.0%
TCTAATATGTACCCGCATGC+AGG - chr3_3:71051446-71051465 Msa0469270:intron 45.0%
TCTTTGTATCTCCCGCATCT+AGG + chr3_3:71052172-71052191 None:intergenic 45.0%
CAAGTGGCAGACTTCTTTGA+TGG + chr3_3:71052345-71052364 None:intergenic 45.0%
TAAACAGCCGTTTAGGGGTT+GGG + chr3_3:71052402-71052421 None:intergenic 45.0%
ATAAACAGCCGTTTAGGGGT+TGG + chr3_3:71052403-71052422 None:intergenic 45.0%
ATGCCAAAAAAGGACATGGG+GGG - chr3_3:71052431-71052450 Msa0469270:CDS 45.0%
! TTGAGCGGAAGTTTTCCAAG+AGG + chr3_3:71052579-71052598 None:intergenic 45.0%
! TGGTTATGCATTTTCCCCCA+TGG - chr3_3:71052753-71052772 Msa0469270:intron 45.0%
!! GATAATTTCGGGCTAGCTTC+CGG + chr3_3:71052824-71052843 None:intergenic 45.0%
AGTGGGAACAGAGCAAAAGA+CGG + chr3_3:71052915-71052934 None:intergenic 45.0%
TGCTATGGACAAAATGGTCC+GGG - chr3_3:71052975-71052994 Msa0469270:intron 45.0%
ACTTTATGCTGCAGAGATCC+TGG - chr3_3:71053199-71053218 Msa0469270:intron 45.0%
GGAAATCAGTAATGCGTACG+AGG - chr3_3:71053240-71053259 Msa0469270:intron 45.0%
TGCGTACGAGGTAAAACTAG+AGG - chr3_3:71053252-71053271 Msa0469270:intron 45.0%
TATGACAAATTTGGGGAGGC+AGG - chr3_3:71053376-71053395 Msa0469270:intron 45.0%
ATGACAAATTTGGGGAGGCA+GGG - chr3_3:71053377-71053396 Msa0469270:intron 45.0%
CTTAAAGGTTCACCGGGATT+TGG - chr3_3:71053400-71053419 Msa0469270:intron 45.0%
!! AGCTGTTTTCGGAGTGGAAA+AGG - chr3_3:71053654-71053673 Msa0469270:intron 45.0%
ATTAGGCGACTAGAGAAGTG+TGG - chr3_3:71053685-71053704 Msa0469270:intron 45.0%
ATGGTTCAGGAGCTAAACCA+GGG - chr3_3:71053716-71053735 Msa0469270:intron 45.0%
CATCTGGATGATTTAGTCCC+TGG + chr3_3:71053736-71053755 None:intergenic 45.0%
TCCAGATGTAACACATGTGG+TGG - chr3_3:71053748-71053767 Msa0469270:intron 45.0%
ACCACCACATGTGTTACATC+TGG + chr3_3:71053752-71053771 None:intergenic 45.0%
ATGTAACACATGTGGTGGTC+AGG - chr3_3:71053753-71053772 Msa0469270:intron 45.0%
TGTAACACATGTGGTGGTCA+GGG - chr3_3:71053754-71053773 Msa0469270:intron 45.0%
ACTCAAACAAGGACTCCGTT+GGG - chr3_3:71053787-71053806 Msa0469270:intron 45.0%
GACTGCTGAAAGATACCCAA+CGG + chr3_3:71053805-71053824 None:intergenic 45.0%
!! ATGACTTGCTCGTCTTGCAA+TGG - chr3_3:71053826-71053845 Msa0469270:intron 45.0%
!! TGACTTGCTCGTCTTGCAAT+GGG - chr3_3:71053827-71053846 Msa0469270:intron 45.0%
ATAAGTCTCAAGGTTCCAGC+CGG - chr3_3:71053916-71053935 Msa0469270:CDS 45.0%
TGGATTCTGGTAGCCGTTTA+AGG - chr3_3:71053941-71053960 Msa0469270:CDS 45.0%
GGATTCTGGTAGCCGTTTAA+GGG - chr3_3:71053942-71053961 Msa0469270:CDS 45.0%
CGTTTAAGGGTCCGAAATGA+AGG - chr3_3:71053955-71053974 Msa0469270:CDS 45.0%
AGAACAACAAAGAGGTCACC+AGG + chr3_3:71054006-71054025 None:intergenic 45.0%
GTGTCTTCTCGTTTAAGCAC+GGG + chr3_3:71054045-71054064 None:intergenic 45.0%
GGTGTCTTCTCGTTTAAGCA+CGG + chr3_3:71054046-71054065 None:intergenic 45.0%
TCCACCATTCCATCTACAGT+CGG + chr3_3:71054132-71054151 None:intergenic 45.0%
! GCCAGGATCAACACTTGTTA+TGG - chr3_3:71054176-71054195 Msa0469270:intron 45.0%
!! GCCATAACAAGTGTTGATCC+TGG + chr3_3:71054180-71054199 None:intergenic 45.0%
GGATGCTTCATTCATGACCT+TGG - chr3_3:71054417-71054436 Msa0469270:intron 45.0%
!!! TTTTTATATTTTTTTTACAA+GGG - chr3_3:71051355-71051374 Msa0469270:intron 5.0%
!! GGGTTCTAGAAAGAGCGACA+AGG - chr3_3:71048995-71049014 Msa0469270:three_prime_UTR 50.0%
GGGAATGAAAGGGAACTTGG+TGG + chr3_3:71049088-71049107 None:intergenic 50.0%
GAAGTTGGAAGGAGAGGATG+AGG + chr3_3:71049165-71049184 None:intergenic 50.0%
GAGAGAGAAGTTGGAAGGAG+AGG + chr3_3:71049171-71049190 None:intergenic 50.0%
AGTAGCAGCGCCTATAACAC+AGG - chr3_3:71049197-71049216 Msa0469270:three_prime_UTR 50.0%
GCACTTATTTCCGGAGCAGA+AGG + chr3_3:71049527-71049546 None:intergenic 50.0%
GTGGATCTGGCAACAATCTG+AGG + chr3_3:71049716-71049735 None:intergenic 50.0%
!! CTTGGCTATTGTGGTGGATC+TGG + chr3_3:71049729-71049748 None:intergenic 50.0%
TCAACTCCGGTAGGAGTTCA+GGG + chr3_3:71050013-71050032 None:intergenic 50.0%
GGAGGGTCTTACAAAGTCAC+TGG - chr3_3:71050767-71050786 Msa0469270:intron 50.0%
AGGACTACTACACCGTCCTT+GGG - chr3_3:71051466-71051485 Msa0469270:intron 50.0%
ATCTTTCGAGAGAGAGAGGG+AGG - chr3_3:71052004-71052023 Msa0469270:intron 50.0%
TCTTTCGAGAGAGAGAGGGA+GGG - chr3_3:71052005-71052024 Msa0469270:intron 50.0%
AAACAGCCGTTTAGGGGTTG+GGG + chr3_3:71052401-71052420 None:intergenic 50.0%
!!! TAGCCCCCCATGTCCTTTTT+TGG + chr3_3:71052437-71052456 None:intergenic 50.0%
ATCCTTGTACGTGGTCCTCT+TGG - chr3_3:71052561-71052580 Msa0469270:intron 50.0%
TTCCAAGAGGACCACGTACA+AGG + chr3_3:71052566-71052585 None:intergenic 50.0%
TGAACTTCGGCAGTCTTGAG+CGG + chr3_3:71052594-71052613 None:intergenic 50.0%
AAAGGTTCACCGGGATTTGG+TGG - chr3_3:71053403-71053422 Msa0469270:intron 50.0%
! AAGGTTCACCGGGATTTGGT+GGG - chr3_3:71053404-71053423 Msa0469270:intron 50.0%
TGAGTCGCTATTTGAGGGCA+TGG - chr3_3:71053552-71053571 Msa0469270:intron 50.0%
! TCGCTATTTGAGGGCATGGA+TGG - chr3_3:71053556-71053575 Msa0469270:intron 50.0%
ATGGTCGCAGCAGACAATCT+TGG - chr3_3:71053575-71053594 Msa0469270:intron 50.0%
CGCAGCAGACAATCTTGGAA+TGG - chr3_3:71053580-71053599 Msa0469270:intron 50.0%
! GAGAAGTGTGGTACTTGCGA+TGG - chr3_3:71053697-71053716 Msa0469270:intron 50.0%
TGTGGTACTTGCGATGGTTC+AGG - chr3_3:71053703-71053722 Msa0469270:intron 50.0%
GATGGTTCAGGAGCTAAACC+AGG - chr3_3:71053715-71053734 Msa0469270:intron 50.0%
!! GACGGGTTGTCACTCAAACA+AGG - chr3_3:71053776-71053795 Msa0469270:intron 50.0%
CACTCAAACAAGGACTCCGT+TGG - chr3_3:71053786-71053805 Msa0469270:intron 50.0%
ACCCCTTGCAGTACATGTTC+TGG - chr3_3:71053865-71053884 Msa0469270:intron 50.0%
CCCAGAACATGTACTGCAAG+GGG + chr3_3:71053869-71053888 None:intergenic 50.0%
CCCCTTGCAGTACATGTTCT+GGG - chr3_3:71053866-71053885 Msa0469270:intron 50.0%
CCCCAGAACATGTACTGCAA+GGG + chr3_3:71053870-71053889 None:intergenic 50.0%
CCCTTGCAGTACATGTTCTG+GGG - chr3_3:71053867-71053886 Msa0469270:intron 50.0%
TCCCCAGAACATGTACTGCA+AGG + chr3_3:71053871-71053890 None:intergenic 50.0%
!! TGCAGTACATGTTCTGGGGA+TGG - chr3_3:71053871-71053890 Msa0469270:intron 50.0%
!!! TCCGCTTTGTTTTCCTCACC+CGG + chr3_3:71053897-71053916 None:intergenic 50.0%
TCTCGTTTAAGCACGGGATC+CGG + chr3_3:71054039-71054058 None:intergenic 50.0%
GGTTCCGACTGTAGATGGAA+TGG - chr3_3:71054125-71054144 Msa0469270:intron 50.0%
TCCGACTGTAGATGGAATGG+TGG - chr3_3:71054128-71054147 Msa0469270:intron 50.0%
GAACTCTCGGAGTTGAGCAA+AGG - chr3_3:71054312-71054331 Msa0469270:intron 50.0%
GGAAGGAGAGGATGAGGAAG+TGG + chr3_3:71049159-71049178 None:intergenic 55.0%
CTCAACTCCGGTAGGAGTTC+AGG + chr3_3:71050014-71050033 None:intergenic 55.0%
CAAAGGTGAGCAAGAGAGCC+AGG + chr3_3:71050356-71050375 None:intergenic 55.0%
TGCATCGTCGAAGGGGATCA+AGG - chr3_3:71051267-71051286 Msa0469270:intron 55.0%
GGTGTAGTAGTCCTGCATGC+GGG + chr3_3:71051460-71051479 None:intergenic 55.0%
CGGTGTAGTAGTCCTGCATG+CGG + chr3_3:71051461-71051480 None:intergenic 55.0%
CAGGACTACTACACCGTCCT+TGG - chr3_3:71051465-71051484 Msa0469270:intron 55.0%
GGACTACTACACCGTCCTTG+GGG - chr3_3:71051467-71051486 Msa0469270:intron 55.0%
AACAGCCGTTTAGGGGTTGG+GGG + chr3_3:71052400-71052419 None:intergenic 55.0%
TTTGGGGAGGCAGGGCTTAA+AGG - chr3_3:71053385-71053404 Msa0469270:intron 55.0%
GGCAGGGCTTAAAGGTTCAC+CGG - chr3_3:71053393-71053412 Msa0469270:intron 55.0%
GCAGGGCTTAAAGGTTCACC+GGG - chr3_3:71053394-71053413 Msa0469270:intron 55.0%
!! AGGTTCACCGGGATTTGGTG+GGG - chr3_3:71053405-71053424 Msa0469270:intron 55.0%
ACACATGTGGTGGTCAGGGA+CGG - chr3_3:71053758-71053777 Msa0469270:intron 55.0%
TGCTCGTCTTGCAATGGGAC+TGG - chr3_3:71053832-71053851 Msa0469270:intron 55.0%
!! GTACATGTTCTGGGGATGGC+CGG - chr3_3:71053875-71053894 Msa0469270:intron 55.0%
!! TACATGTTCTGGGGATGGCC+GGG - chr3_3:71053876-71053895 Msa0469270:CDS 55.0%
GCCGGGTGAGGAAAACAAAG+CGG - chr3_3:71053893-71053912 Msa0469270:CDS 55.0%
ACGGCTACCAGAATCCACAC+CGG + chr3_3:71053938-71053957 None:intergenic 55.0%
CTCGTTTAAGCACGGGATCC+GGG + chr3_3:71054038-71054057 None:intergenic 55.0%
ATCCTGGCTGTGTCCCAGAT+GGG + chr3_3:71054164-71054183 None:intergenic 55.0%
ACCCTCCCCCAACCCCTAAA+CGG - chr3_3:71052392-71052411 Msa0469270:CDS 60.0%
!! GGTTCACCGGGATTTGGTGG+GGG - chr3_3:71053406-71053425 Msa0469270:intron 60.0%
CACATGTGGTGGTCAGGGAC+GGG - chr3_3:71053759-71053778 Msa0469270:intron 60.0%
TCTCAAGGTTCCAGCCGGTG+TGG - chr3_3:71053921-71053940 Msa0469270:CDS 60.0%
GTTCCAGCCGGTGTGGATTC+TGG - chr3_3:71053928-71053947 Msa0469270:CDS 60.0%
CTACCAGAATCCACACCGGC+TGG + chr3_3:71053934-71053953 None:intergenic 60.0%
! ATCCCATCTGGGACACAGCC+AGG - chr3_3:71054159-71054178 Msa0469270:intron 60.0%
GATCCTGGCTGTGTCCCAGA+TGG + chr3_3:71054165-71054184 None:intergenic 60.0%
AGCAAAGGCAAGACTGCCGC+CGG - chr3_3:71054327-71054346 Msa0469270:intron 60.0%
GCCGTTTAGGGGTTGGGGGA+GGG + chr3_3:71052396-71052415 None:intergenic 65.0%
AGCCGTTTAGGGGTTGGGGG+AGG + chr3_3:71052397-71052416 None:intergenic 65.0%
!! ACCGGGATTTGGTGGGGGCA+TGG - chr3_3:71053411-71053430 Msa0469270:intron 65.0%
CCCATGCCCCCACCAAATCC+CGG + chr3_3:71053415-71053434 None:intergenic 65.0%
!! CCGGGATTTGGTGGGGGCAT+GGG - chr3_3:71053412-71053431 Msa0469270:intron 65.0%
!! CGGGATTTGGTGGGGGCATG+GGG - chr3_3:71053413-71053432 Msa0469270:intron 65.0%
!! GGGATTTGGTGGGGGCATGG+GGG - chr3_3:71053414-71053433 Msa0469270:intron 65.0%
!! GTTCTGGGGATGGCCGGGTG+AGG - chr3_3:71053881-71053900 Msa0469270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 71048986 71054658 71048986 ID=Msa0469270;Name=Msa0469270
chr3_3 mRNA 71048986 71054658 71048986 ID=Msa0469270-mRNA-1;Parent=Msa0469270;Name=Msa0469270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=304|1|1|1|0.85|0.75|8|299|438
chr3_3 exon 71048986 71050118 71048986 ID=Msa0469270-mRNA-1:exon:17431;Parent=Msa0469270-mRNA-1
chr3_3 exon 71050209 71050298 71050209 ID=Msa0469270-mRNA-1:exon:17430;Parent=Msa0469270-mRNA-1
chr3_3 exon 71050383 71050431 71050383 ID=Msa0469270-mRNA-1:exon:17429;Parent=Msa0469270-mRNA-1
chr3_3 exon 71050785 71050827 71050785 ID=Msa0469270-mRNA-1:exon:17428;Parent=Msa0469270-mRNA-1
chr3_3 exon 71052119 71052176 71052119 ID=Msa0469270-mRNA-1:exon:17427;Parent=Msa0469270-mRNA-1
chr3_3 exon 71052334 71052469 71052334 ID=Msa0469270-mRNA-1:exon:17426;Parent=Msa0469270-mRNA-1
chr3_3 exon 71053876 71054053 71053876 ID=Msa0469270-mRNA-1:exon:17425;Parent=Msa0469270-mRNA-1
chr3_3 exon 71054426 71054658 71054426 ID=Msa0469270-mRNA-1:exon:17424;Parent=Msa0469270-mRNA-1
chr3_3 five_prime_UTR 71054426 71054658 71054426 ID=Msa0469270-mRNA-1:five_prime_utr;Parent=Msa0469270-mRNA-1
chr3_3 five_prime_UTR 71053983 71054053 71053983 ID=Msa0469270-mRNA-1:five_prime_utr;Parent=Msa0469270-mRNA-1
chr3_3 CDS 71053876 71053982 71053876 ID=Msa0469270-mRNA-1:cds;Parent=Msa0469270-mRNA-1
chr3_3 CDS 71052334 71052469 71052334 ID=Msa0469270-mRNA-1:cds;Parent=Msa0469270-mRNA-1
chr3_3 CDS 71052119 71052176 71052119 ID=Msa0469270-mRNA-1:cds;Parent=Msa0469270-mRNA-1
chr3_3 CDS 71050785 71050827 71050785 ID=Msa0469270-mRNA-1:cds;Parent=Msa0469270-mRNA-1
chr3_3 CDS 71050383 71050431 71050383 ID=Msa0469270-mRNA-1:cds;Parent=Msa0469270-mRNA-1
chr3_3 CDS 71050209 71050298 71050209 ID=Msa0469270-mRNA-1:cds;Parent=Msa0469270-mRNA-1
chr3_3 CDS 71049285 71050118 71049285 ID=Msa0469270-mRNA-1:cds;Parent=Msa0469270-mRNA-1
chr3_3 three_prime_UTR 71048986 71049284 71048986 ID=Msa0469270-mRNA-1:three_prime_utr;Parent=Msa0469270-mRNA-1
Gene Sequence

>Msa0469270

ATGGCAGTTACACCTTTTGGCAGTACATCAGCTACTCAATGGGGAATTCGTCCTCAGATTGTTGCCAGATCCACCACAATAGCCAAGTTTGCATCATCAAGACACAATGCTACAAGCAGGATAAGCTTTATGGCTGCCCCAAGTTCAACCTTTTTTGCTCGGGATTCCTTGCGTTTTAATATAGGTTCACATCAAACTTTGCATCGTCGAAGGGGATCAAGGTTGATAGTTAGAGCAGATGCAGACTACTACACCGTCCTTGGGGTGTCAAAAAATTCTACTAAATCTGAAATTAAGACTGCTTACCGGAAGCTAGCCCGAAATTATCATCCAGATGTGAACAAAGATCCTGGTGCAGAAGAGAAATTTAAGGAAATCAGTAATGCGTACGAGGTCTTGTCAGATGATGAGAAACGGTCCATATATGACAAATTTGGGGAGGCAGGGCTTAAAGGTTCACCGGGATTTGGTGGGGGCATGGGGGATTTCAGCAACCCTTTTGATCTATTTGAGTCGCTATTTGAGGGCATGGATGGTCGCAGCAGACAATCTTGGAATGGAGCAATGAATGGCGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCTGTTTTCGGAGTGGAAAAGGAGATAGAGATTAGGCGACTAGAGAAGTGTGGTACTTGCGATGGTTCAGGAGCTAAACCAGGGACTAAATCATCCAGATGTAACACATGTGGTGGTCAGGGACGGGTTGTCACTCAAACAAGGACTCCGTTGGGTATCTTTCAGCAGTCTATGACTTGCTCGTCTTGCAATGGGACTGGAGAAACTCGAACCCCTTGCAGTACATGTTCTGGGGATGGCCGGGTGAGGAAAACAAAGCGGATAAGTCTCAAGGTTCCAGCCGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGAAATGAAGGTAACTCTGGAAAGAAAGGTGGTTCTCCTGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCGGATCCCGTGCTTAAACGAGAAGACACCAACATTTTATATTCTTGTAAAGTGTCTTATATTGATGCAATCTTGGGGACTACAATTAAGGTTCCGACTGTAGATGGAATGGTGGATTTGAAAATCCCATCTGGGACACAGCCAGGATCAACACTTGTTATGGCAAAGAAAGGTGTTCCTCTGCTGAATAAGAAGAATATGAGGGGCGATCAATTCGTTCGAGTGCAAGTTGAGATTCCTAAAAAACTGAGCAGCGATGAGAGAAAACTGATTGAGGAACTCTCGGAGTTGAGCAAAGGCAAGACTGCCGCCGGTATGAGATGA
Protein sequence

>Msa0469270

MAVTPFGSTSATQWGIRPQIVARSTTIAKFASSRHNATSRISFMAAPSSTFFARDSLRFNIGSHQTLHRRRGSRLIVRADADYYTVLGVSKNSTKSEIKTAYRKLARNYHPDVNKDPGAEEKFKEISNAYEVLSDDEKRSIYDKFGEAGLKGSPGFGGGMGDFSNPFDLFESLFEGMDGRSRQSWNGAMNGEDEYYSLVLNFKEAVFGVEKEIEIRRLEKCGTCDGSGAKPGTKSSRCNTCGGQGRVVTQTRTPLGIFQQSMTCSSCNGTGETRTPCSTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNSGKKGGSPGDLFVVLEVIPDPVLKREDTNILYSCKVSYIDAILGTTIKVPTVDGMVDLKIPSGTQPGSTLVMAKKGVPLLNKKNMRGDQFVRVQVEIPKKLSSDERKLIEELSELSKGKTAAGMR*