AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139920 MtrunA17_Chr7g0214751 97.917 240 5 0 1 240 1 240 2.17e-174 479
Msa0139920 MtrunA17_Chr8g0335211 30.201 149 71 5 90 237 87 203 2.98e-12 63.9
Msa0139920 MtrunA17_Chr1g0179231 31.915 141 83 3 102 235 79 213 2.17e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139920 AT5G13410.1 73.934 211 51 1 34 240 46 256 7.01e-113 324
Msa0139920 AT5G13410.2 67.722 158 47 1 34 187 46 203 5.00e-72 219
Msa0139920 AT5G13410.3 65.493 142 43 2 34 169 46 187 1.43e-58 184
Msa0139920 AT4G19830.1 32.000 150 81 4 97 235 83 222 4.75e-13 66.6
Msa0139920 AT3G60370.1 28.671 143 70 4 95 237 114 224 1.22e-11 63.2
Msa0139920 AT3G60370.2 28.671 143 70 4 95 237 143 253 1.47e-11 63.2

Find 75 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCTCCTTTCTTTGGTTT+TGG 0.098567 1_3:-73861783 None:intergenic
AATTAGAACACGTATTTATT+TGG 0.192325 1_3:-73859768 None:intergenic
AGTACCAGAGATTGAGATTT+AGG 0.204966 1_3:-73859933 None:intergenic
GAAAATTTGACAAATCAATT+TGG 0.208349 1_3:-73863713 None:intergenic
ACTACTGTCTCTCCTTTCTT+TGG 0.230123 1_3:-73861789 None:intergenic
TCTTCCATTGCTGTCATTGC+TGG 0.261109 1_3:+73860310 Msa0139920:CDS
GATTCGGTTTCTACGTAGTC+TGG 0.296521 1_3:-73861642 None:intergenic
ACCGAGAATGTTGTAGGTCT+TGG 0.306682 1_3:-73863525 None:intergenic
CTGTTGCAGGCATGTCTCTC+GGG 0.313157 1_3:+73862979 Msa0139920:CDS
GGCTACACCATAGGTTATTA+TGG 0.314573 1_3:+73862120 Msa0139920:CDS
AGAAACTAACCTGAATGTTT+TGG 0.331460 1_3:-73863757 None:intergenic
CAAGTTCCATTCAGGTAGAT+TGG 0.341541 1_3:+73862094 Msa0139920:intron
CGAATCTGGACTCCAGTATA+AGG 0.349702 1_3:+73861659 Msa0139920:CDS
GCGCTTAGAGGGAAGGATTA+TGG 0.359617 1_3:+73861600 Msa0139920:CDS
GAAGAATCGGAGAGATTATC+AGG 0.361485 1_3:-73860034 None:intergenic
CATACAGTGCCTGCGCTTAG+AGG 0.369660 1_3:+73861588 Msa0139920:intron
CCTGAGAGTGATTATAATAA+AGG 0.373753 1_3:+73863498 Msa0139920:CDS
CTCTCAGGATATCCAAGTTC+TGG 0.374321 1_3:-73863483 None:intergenic
GCTGTTGCAGGCATGTCTCT+CGG 0.418797 1_3:+73862978 Msa0139920:CDS
CAGGACTTGCGACCCGGAAA+TGG 0.420506 1_3:+73861759 Msa0139920:intron
CGTGCTGCATCACCTTATAC+TGG 0.421611 1_3:-73861671 None:intergenic
AAGTTCCATTCAGGTAGATT+GGG 0.421771 1_3:+73862095 Msa0139920:intron
CCGAGAATGTTGTAGGTCTT+GGG 0.424007 1_3:-73863524 None:intergenic
GACTACGTAGAAACCGAATC+TGG 0.424093 1_3:+73861645 Msa0139920:CDS
CTCTCCGATTCTTCTTTCTC+CGG 0.431412 1_3:+73860043 Msa0139920:CDS
ATCAAAATTGTCGCATAGGC+AGG 0.436623 1_3:-73864202 None:intergenic
ATATCACCACCAAAACATTC+AGG 0.437986 1_3:+73863748 Msa0139920:three_prime_UTR
ACTCTTACCGAGAATGTTGT+AGG 0.441297 1_3:-73863531 None:intergenic
GAAGGATCAATCAATGATAC+TGG 0.446572 1_3:-73863921 None:intergenic
CTTATACTGGAGTCCAGATT+CGG 0.447520 1_3:-73861658 None:intergenic
CCCAAGACCTACAACATTCT+CGG 0.450933 1_3:+73863524 Msa0139920:CDS
AGAAAGAGAAGCAATGGAAA+AGG 0.453395 1_3:-73859907 None:intergenic
AAATATGCAGGGTGATGATA+AGG 0.476575 1_3:+73862273 Msa0139920:intron
TTTACAGGGCCAACGAGCCT+TGG 0.477434 1_3:+73863619 Msa0139920:intron
AGGTAGAGAAAGAGAAGCAA+TGG 0.477899 1_3:-73859913 None:intergenic
TTTCTGGTTATGTTCTCCAT+AGG 0.483197 1_3:+73863959 Msa0139920:three_prime_UTR
CCTTTATTATAATCACTCTC+AGG 0.484019 1_3:-73863498 None:intergenic
AAAATACTCACAAGGTATGA+AGG 0.485375 1_3:-73863939 None:intergenic
GTACTGTACTTTGTGTTGTG+TGG 0.489766 1_3:-73859855 None:intergenic
GTCGTTTGAACGGAGAAAGA+TGG 0.491223 1_3:+73860282 Msa0139920:CDS
TCTACCTAAATCTCAATCTC+TGG 0.493829 1_3:+73859929 Msa0139920:CDS
CAGTACAGAAGTTACAGTTA+TGG 0.509987 1_3:+73859872 Msa0139920:exon
AACAAAAGGCGGTTCCTTCG+AGG 0.510702 1_3:+73862167 Msa0139920:CDS
ATAATTGTACCACCAGAACT+TGG 0.512580 1_3:+73863471 Msa0139920:CDS
GTACTTTGTGTTGTGTGGAA+TGG 0.513767 1_3:-73859850 None:intergenic
CTGACCGGAGAAAGAAGAAT+CGG 0.525266 1_3:-73860047 None:intergenic
TGTTGCAGGCATGTCTCTCG+GGG 0.531908 1_3:+73862980 Msa0139920:CDS
GCAACAGCCTCTTCAAAAGC+AGG 0.542551 1_3:-73862963 None:intergenic
GAAGCCCGGAATAAAACAAA+AGG 0.543558 1_3:+73862153 Msa0139920:CDS
TATGCGACCATAATAACCTA+TGG 0.545221 1_3:-73862127 None:intergenic
TTACATCAAAATTGTCGCAT+AGG 0.547571 1_3:-73864206 None:intergenic
AAATTGCAGGACTTGCGACC+CGG 0.549601 1_3:+73861753 Msa0139920:intron
GAGTCTTGTCTATCAACCCT+TGG 0.550697 1_3:-73863658 None:intergenic
ATGGTCGCATATTTGAAGCC+CGG 0.550903 1_3:+73862139 Msa0139920:CDS
AATGGCCCAAAACCAAAGAA+AGG 0.553989 1_3:+73861777 Msa0139920:CDS
GATTGGGATGGCTACACCAT+AGG 0.554754 1_3:+73862111 Msa0139920:CDS
ATACAGTGCCTGCGCTTAGA+GGG 0.556567 1_3:+73861589 Msa0139920:intron
ATTCGGTTTCTACGTAGTCT+GGG 0.563402 1_3:-73861641 None:intergenic
GTTCCTTAGCACAAAATCCA+AGG 0.568528 1_3:-73863636 None:intergenic
TAATCCTTCCCTCTAAGCGC+AGG 0.569928 1_3:-73861597 None:intergenic
AGTGCCTGCGCTTAGAGGGA+AGG 0.581188 1_3:+73861593 Msa0139920:intron
TTTCTCCGTTCAAACGACGT+TGG 0.585440 1_3:-73860277 None:intergenic
TCCATTCAGGTAGATTGGGA+TGG 0.591083 1_3:+73862099 Msa0139920:intron
AGTTCCAGCAATGACAGCAA+TGG 0.596327 1_3:-73860314 None:intergenic
GGTAAAAGCAACGGTAAGAG+TGG 0.605043 1_3:+73860241 Msa0139920:intron
GCACAAAATCCAAGGCTCGT+TGG 0.605057 1_3:-73863628 None:intergenic
GAGAGTGATTATAATAAAGG+TGG 0.627466 1_3:+73863501 Msa0139920:CDS
TCAGGATATCCAAGTTCTGG+TGG 0.630805 1_3:-73863480 None:intergenic
CAAAACATTCAATACCTCGA+AGG 0.640541 1_3:-73862181 None:intergenic
GCCCGGAATAAAACAAAAGG+CGG 0.648713 1_3:+73862156 Msa0139920:CDS
TCAATAACTACATACAGATG+AGG 0.653463 1_3:+73864105 Msa0139920:three_prime_UTR
AAAGAAAGGAGAGACAGTAG+TGG 0.691301 1_3:+73861791 Msa0139920:CDS
GTTGCAGGCATGTCTCTCGG+GGG 0.694566 1_3:+73862981 Msa0139920:CDS
ATAACCAGAAAATACTCACA+AGG 0.721530 1_3:-73863947 None:intergenic
ATTCAAAGTAGGATCGCACG+AGG 0.729797 1_3:+73862306 Msa0139920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCCTTAAAAAATTTAATA+TGG + chr1_3:73863351-73863370 Msa0139920:intron 10.0%
!! AAGCTATTATTAATTGAAAT+TGG - chr1_3:73861280-73861299 None:intergenic 15.0%
!! ATTTGAAAAACAACAAAATA+AGG - chr1_3:73862257-73862276 None:intergenic 15.0%
!!! TGTTAATTTATTTTATCTAG+AGG + chr1_3:73862534-73862553 Msa0139920:intron 15.0%
!!! GTTAATTTATTTTATCTAGA+GGG + chr1_3:73862535-73862554 Msa0139920:intron 15.0%
!! AAATTATAAGTGATATAACA+TGG + chr1_3:73862653-73862672 Msa0139920:intron 15.0%
!! CAGTATAATAAAATAAATTC+AGG - chr1_3:73863150-73863169 None:intergenic 15.0%
!!! CAACCATATTAAATTTTTTA+AGG - chr1_3:73863357-73863376 None:intergenic 15.0%
!! AATTAGAACACGTATTTATT+TGG - chr1_3:73859771-73859790 None:intergenic 20.0%
!! GAAATGATAATAGTTAAGTA+TGG - chr1_3:73860005-73860024 None:intergenic 20.0%
!! TAACTATTATCATTTCTTTC+AGG + chr1_3:73860009-73860028 Msa0139920:intron 20.0%
!! AATCAACTTAACTTATGTAT+AGG + chr1_3:73860460-73860479 Msa0139920:intron 20.0%
!!! TGTTTTCATAAACTATCTTT+GGG + chr1_3:73860538-73860557 Msa0139920:intron 20.0%
!!! TTATTTCTATAAACTCTCTT+GGG + chr1_3:73860796-73860815 Msa0139920:intron 20.0%
!!! TCATTAAGCTAAGTTTTTTT+AGG - chr1_3:73860825-73860844 None:intergenic 20.0%
!! TATACAATACAACAATATCA+TGG - chr1_3:73860960-73860979 None:intergenic 20.0%
!! ACGACAAATAATATAATGAA+GGG - chr1_3:73860983-73861002 None:intergenic 20.0%
!! AACGACAAATAATATAATGA+AGG - chr1_3:73860984-73861003 None:intergenic 20.0%
!! TACTCGTTCTAATTTAAATA+GGG - chr1_3:73861310-73861329 None:intergenic 20.0%
!! ATACTCGTTCTAATTTAAAT+AGG - chr1_3:73861311-73861330 None:intergenic 20.0%
!!! GTATTTGTTTTATCATAAAC+TGG + chr1_3:73861480-73861499 Msa0139920:intron 20.0%
!! CATTATATTGAAATCTTTGT+AGG - chr1_3:73861551-73861570 None:intergenic 20.0%
!! TAGTAGTATTAATAAATTGC+AGG + chr1_3:73861740-73861759 Msa0139920:intron 20.0%
!!! CTATTGATTTTATAGTCAAT+TGG + chr1_3:73861835-73861854 Msa0139920:intron 20.0%
!!! ATACTGATTCTAAATCAAAT+TGG + chr1_3:73861902-73861921 Msa0139920:intron 20.0%
!! TTATAATTTCGTTATAGAAC+AGG - chr1_3:73862642-73862661 None:intergenic 20.0%
!! ATAAATTCTTACTCTTGATT+TGG + chr1_3:73863178-73863197 Msa0139920:intron 20.0%
!! TAAATTCTTACTCTTGATTT+GGG + chr1_3:73863179-73863198 Msa0139920:intron 20.0%
!!! ATTTTAATTACGGAAATTCA+GGG - chr1_3:73863220-73863239 None:intergenic 20.0%
!!! AATTTTAATTACGGAAATTC+AGG - chr1_3:73863221-73863240 None:intergenic 20.0%
!! TTTAATATGGTTGAAAAGTA+AGG + chr1_3:73863364-73863383 Msa0139920:intron 20.0%
!! GAAAATTTGACAAATCAATT+TGG - chr1_3:73863716-73863735 None:intergenic 20.0%
!!! ACAATTTTGATGTAATATTC+CGG + chr1_3:73864214-73864233 Msa0139920:three_prime_UTR 20.0%
! ATTTCATTAATGTCGAGTTT+GGG - chr1_3:73860120-73860139 None:intergenic 25.0%
! AAATATGCTATTAACTTTGC+TGG - chr1_3:73860171-73860190 None:intergenic 25.0%
!!! TAATATCTAACCGTTTTTTC+AGG + chr1_3:73860220-73860239 Msa0139920:intron 25.0%
!! CTGTTTTCATAAACTATCTT+TGG + chr1_3:73860537-73860556 Msa0139920:intron 25.0%
! ACTTATTTGAGCTTATGTAT+TGG + chr1_3:73860700-73860719 Msa0139920:intron 25.0%
!!! CTTATTTCTATAAACTCTCT+TGG + chr1_3:73860795-73860814 Msa0139920:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr1_3:73860933-73860952 Msa0139920:intron 25.0%
! TCCATTATACTAAACAATGT+AGG + chr1_3:73861051-73861070 Msa0139920:intron 25.0%
! TCCTACATTGTTTAGTATAA+TGG - chr1_3:73861055-73861074 None:intergenic 25.0%
! ACTCGTTCTAATTTAAATAG+GGG - chr1_3:73861309-73861328 None:intergenic 25.0%
!!! CTTTTTCTTATTTTACTACG+TGG - chr1_3:73861525-73861544 None:intergenic 25.0%
!!! TTCTTTGAAATGAGTTTTGA+TGG + chr1_3:73861982-73862001 Msa0139920:intron 25.0%
!!! TCTTTGAAATGAGTTTTGAT+GGG + chr1_3:73861983-73862002 Msa0139920:intron 25.0%
!!! TTGTTGTTTTTCAAATATGC+AGG + chr1_3:73862261-73862280 Msa0139920:intron 25.0%
!!! TGTTGTTTTTCAAATATGCA+GGG + chr1_3:73862262-73862281 Msa0139920:intron 25.0%
!!! GACTTTTTCAAATTCAAAGT+AGG + chr1_3:73862295-73862314 Msa0139920:CDS 25.0%
! ATATTAATCATTACATGACG+AGG - chr1_3:73862339-73862358 None:intergenic 25.0%
! ATAGTTCCTTCAATTTCAAT+AGG + chr1_3:73862357-73862376 Msa0139920:intron 25.0%
! AAAGATCCTATTGAAATTGA+AGG - chr1_3:73862366-73862385 None:intergenic 25.0%
!! TTCAATAGGATCTTTTCTAT+AGG + chr1_3:73862371-73862390 Msa0139920:intron 25.0%
! ATATAAAACTGAACCACAAA+GGG - chr1_3:73862565-73862584 None:intergenic 25.0%
! TATATAAAACTGAACCACAA+AGG - chr1_3:73862566-73862585 None:intergenic 25.0%
! AATTTGAGTGCTTAATATGT+TGG - chr1_3:73862867-73862886 None:intergenic 25.0%
! AGAAACTGTAATTCAGTAAA+TGG - chr1_3:73863089-73863108 None:intergenic 25.0%
! GTTTCTATCAATTCAAACTT+TGG + chr1_3:73863103-73863122 Msa0139920:intron 25.0%
! ATCAATTCAAACTTTGGATT+TGG + chr1_3:73863109-73863128 Msa0139920:intron 25.0%
! TCAATTCAAACTTTGGATTT+GGG + chr1_3:73863110-73863129 Msa0139920:intron 25.0%
! AGAGTAAGAATTTATAGAAG+TGG - chr1_3:73863173-73863192 None:intergenic 25.0%
!! AAATTCTTACTCTTGATTTG+GGG + chr1_3:73863180-73863199 Msa0139920:intron 25.0%
!!! GCGATTGACAATTTTAATTA+CGG - chr1_3:73863230-73863249 None:intergenic 25.0%
! TAATTAAAATTGTCAATCGC+TGG + chr1_3:73863230-73863249 Msa0139920:intron 25.0%
! AATTAAAATTGTCAATCGCT+GGG + chr1_3:73863231-73863250 Msa0139920:intron 25.0%
! ATGTACTATAAAGAGATTGA+TGG + chr1_3:73863406-73863425 Msa0139920:intron 25.0%
!! CAATGTGAATATGTTTTACA+GGG + chr1_3:73863605-73863624 Msa0139920:intron 25.0%
! GAATTAATTGTAGACTTATC+TGG - chr1_3:73863891-73863910 None:intergenic 25.0%
!! ATTTCTTTTGATCACTTTGT+TGG + chr1_3:73864164-73864183 Msa0139920:three_prime_UTR 25.0%
! ATAAACGAACAATGAAAAAC+CGG - chr1_3:73864236-73864255 None:intergenic 25.0%
!! TTTTTCATTGTTCGTTTATC+TGG + chr1_3:73864237-73864256 Msa0139920:three_prime_UTR 25.0%
AATGAAAGAAGAATACTGAC+CGG - chr1_3:73860065-73860084 None:intergenic 30.0%
CATTTCATTAATGTCGAGTT+TGG - chr1_3:73860121-73860140 None:intergenic 30.0%
!!! GTTGCTTTTACCTGAAAAAA+CGG - chr1_3:73860233-73860252 None:intergenic 30.0%
!!! GTTTTTTCAGGTAAAAGCAA+CGG + chr1_3:73860232-73860251 Msa0139920:intron 30.0%
! ATTGCTGGAACTTTTTGTAA+AGG + chr1_3:73860325-73860344 Msa0139920:CDS 30.0%
! ACTTTTTGTAAAGGAGGAAT+TGG + chr1_3:73860334-73860353 Msa0139920:CDS 30.0%
TCAAATAAGCCAAATCAAAG+AGG + chr1_3:73860662-73860681 Msa0139920:intron 30.0%
AACATCAACAACCGAAAATT+TGG + chr1_3:73861147-73861166 Msa0139920:intron 30.0%
AACGTATGTATATGAGGTAT+CGG + chr1_3:73861181-73861200 Msa0139920:intron 30.0%
ACATAGTTCAAATAACCCAA+AGG + chr1_3:73861240-73861259 Msa0139920:intron 30.0%
ATATTAAGAAGTTCCGAAGA+AGG + chr1_3:73861329-73861348 Msa0139920:intron 30.0%
AGAGCGCAAAAGAAAAATTT+AGG - chr1_3:73861936-73861955 None:intergenic 30.0%
ATTTGACAACTTTACTCCTA+GGG + chr1_3:73862010-73862029 Msa0139920:intron 30.0%
ATGTTCAGAAATAATTCCCT+AGG - chr1_3:73862029-73862048 None:intergenic 30.0%
! TTTTCTATAGGTCTTGATGT+CGG + chr1_3:73862383-73862402 Msa0139920:intron 30.0%
AAGTAATGTTGAATGCAGTA+GGG + chr1_3:73862463-73862482 Msa0139920:intron 30.0%
!!! TAACATGGTTTTTTTGAGTG+AGG + chr1_3:73862668-73862687 Msa0139920:intron 30.0%
!!! CAAATTATGCCCTTATTTTC+TGG + chr1_3:73862881-73862900 Msa0139920:intron 30.0%
AATTCAGTAAATGGCATGAA+AGG - chr1_3:73863080-73863099 None:intergenic 30.0%
AAGTAAGGCAAATGTATGTT+TGG + chr1_3:73863379-73863398 Msa0139920:intron 30.0%
AGTAAGGCAAATGTATGTTT+GGG + chr1_3:73863380-73863399 Msa0139920:intron 30.0%
CCTTTATTATAATCACTCTC+AGG - chr1_3:73863501-73863520 None:intergenic 30.0%
CCTGAGAGTGATTATAATAA+AGG + chr1_3:73863498-73863517 Msa0139920:CDS 30.0%
GAGAGTGATTATAATAAAGG+TGG + chr1_3:73863501-73863520 Msa0139920:CDS 30.0%
! GCAATGTGAATATGTTTTAC+AGG + chr1_3:73863604-73863623 Msa0139920:intron 30.0%
! AGAAACTAACCTGAATGTTT+TGG - chr1_3:73863760-73863779 None:intergenic 30.0%
AAAATACTCACAAGGTATGA+AGG - chr1_3:73863942-73863961 None:intergenic 30.0%
ATAACCAGAAAATACTCACA+AGG - chr1_3:73863950-73863969 None:intergenic 30.0%
! TCATGATTTTTCATCACCTA+TGG - chr1_3:73863978-73863997 None:intergenic 30.0%
TCAATAACTACATACAGATG+AGG + chr1_3:73864105-73864124 Msa0139920:three_prime_UTR 30.0%
TTACATCAAAATTGTCGCAT+AGG - chr1_3:73864209-73864228 None:intergenic 30.0%
! AACATTTTGTGTGACATTTG+AGG + chr1_3:73864267-73864286 Msa0139920:three_prime_UTR 30.0%
!!! AAGGGAGTGTGTTTTAAAGA+TGG - chr1_3:73859814-73859833 None:intergenic 35.0%
! GGAAGTTGCTAGATTTTGAA+GGG - chr1_3:73859832-73859851 None:intergenic 35.0%
! TGGAAGTTGCTAGATTTTGA+AGG - chr1_3:73859833-73859852 None:intergenic 35.0%
CAGTACAGAAGTTACAGTTA+TGG + chr1_3:73859872-73859891 Msa0139920:exon 35.0%
AGAAAGAGAAGCAATGGAAA+AGG - chr1_3:73859910-73859929 None:intergenic 35.0%
TCTACCTAAATCTCAATCTC+TGG + chr1_3:73859929-73859948 Msa0139920:CDS 35.0%
AGTACCAGAGATTGAGATTT+AGG - chr1_3:73859936-73859955 None:intergenic 35.0%
TGAATGAGTGTGTGAATTGA+AGG - chr1_3:73859979-73859998 None:intergenic 35.0%
GTTCTTTCAATCAGTCTTAG+AGG + chr1_3:73860618-73860637 Msa0139920:intron 35.0%
AAACAAGCTCCTCTTTGATT+TGG - chr1_3:73860674-73860693 None:intergenic 35.0%
! AAATCAAAGAGGAGCTTGTT+TGG + chr1_3:73860673-73860692 Msa0139920:intron 35.0%
ATAAGCACTTTGCAATGGTT+TGG + chr1_3:73860724-73860743 Msa0139920:intron 35.0%
AACAATATCATGGTCCTGTT+TGG - chr1_3:73860950-73860969 None:intergenic 35.0%
! ACACCTCTGTTCCAAATTTT+CGG - chr1_3:73861161-73861180 None:intergenic 35.0%
AGGTGTAACGTATGTATATG+AGG + chr1_3:73861175-73861194 Msa0139920:intron 35.0%
! AGTTTGAGTTTGTAACCTCA+TGG + chr1_3:73861216-73861235 Msa0139920:intron 35.0%
! GTTTGAGTTTGTAACCTCAT+GGG + chr1_3:73861217-73861236 Msa0139920:intron 35.0%
TATTTGAACTATGTCCCATG+AGG - chr1_3:73861234-73861253 None:intergenic 35.0%
AGTTCAAATAACCCAAAGGA+AGG + chr1_3:73861244-73861263 Msa0139920:intron 35.0%
!! GTCATTTTACACCTTCCTTT+GGG - chr1_3:73861258-73861277 None:intergenic 35.0%
!!! TCTCTCCTTTCTTTGGTTTT+GGG - chr1_3:73861785-73861804 None:intergenic 35.0%
ATCTACATAGCAGACATTCT+AGG + chr1_3:73861959-73861978 Msa0139920:intron 35.0%
GATTTGACAACTTTACTCCT+AGG + chr1_3:73862009-73862028 Msa0139920:intron 35.0%
AAGTTCCATTCAGGTAGATT+GGG + chr1_3:73862095-73862114 Msa0139920:intron 35.0%
TATGCGACCATAATAACCTA+TGG - chr1_3:73862130-73862149 None:intergenic 35.0%
!!! AACCGCCTTTTGTTTTATTC+CGG - chr1_3:73862161-73862180 None:intergenic 35.0%
CAAAACATTCAATACCTCGA+AGG - chr1_3:73862184-73862203 None:intergenic 35.0%
AAATATGCAGGGTGATGATA+AGG + chr1_3:73862273-73862292 Msa0139920:intron 35.0%
CTACTGCATTCAACATTACT+TGG - chr1_3:73862464-73862483 None:intergenic 35.0%
CAAGTAATGTTGAATGCAGT+AGG + chr1_3:73862462-73862481 Msa0139920:intron 35.0%
GAATAAGGATAAGTCCTACT+TGG + chr1_3:73862488-73862507 Msa0139920:intron 35.0%
AAGTCCTACTTGGTTATACT+AGG + chr1_3:73862498-73862517 Msa0139920:intron 35.0%
GAATCCTAGTATAACCAAGT+AGG - chr1_3:73862505-73862524 None:intergenic 35.0%
! ATTTAAGCATGTGCTACTGT+TGG + chr1_3:73862587-73862606 Msa0139920:intron 35.0%
AGTTTAGTCCTAATCCCAAA+GGG - chr1_3:73862712-73862731 None:intergenic 35.0%
ATGCAGACTCCAGAAAATAA+GGG - chr1_3:73862893-73862912 None:intergenic 35.0%
! TTCATGTGCTTTGAATGTTC+AGG + chr1_3:73862935-73862954 Msa0139920:intron 35.0%
ATATAGCTAACTTCACCTAG+CGG - chr1_3:73863311-73863330 None:intergenic 35.0%
ACTATGTTTATCAGTGATGC+AGG + chr1_3:73863448-73863467 Msa0139920:intron 35.0%
ATAATTGTACCACCAGAACT+TGG + chr1_3:73863471-73863490 Msa0139920:CDS 35.0%
! ATTTTGTGCTAAGGAACCAA+GGG + chr1_3:73863642-73863661 Msa0139920:CDS 35.0%
!!! GTTTTGGTGGTGATATTTCA+GGG - chr1_3:73863744-73863763 None:intergenic 35.0%
!!! TGTTTTGGTGGTGATATTTC+AGG - chr1_3:73863745-73863764 None:intergenic 35.0%
ATATCACCACCAAAACATTC+AGG + chr1_3:73863748-73863767 Msa0139920:three_prime_UTR 35.0%
!! AACTAACCTGAATGTTTTGG+TGG - chr1_3:73863757-73863776 None:intergenic 35.0%
!!! GTTTTTTTCCATCAGTTCAC+TGG - chr1_3:73863858-73863877 None:intergenic 35.0%
AGACTTATCTGGCAATACAA+AGG - chr1_3:73863880-73863899 None:intergenic 35.0%
GAAGGATCAATCAATGATAC+TGG - chr1_3:73863924-73863943 None:intergenic 35.0%
! CATACCTTGTGAGTATTTTC+TGG + chr1_3:73863943-73863962 Msa0139920:three_prime_UTR 35.0%
!! TTTCTGGTTATGTTCTCCAT+AGG + chr1_3:73863959-73863978 Msa0139920:three_prime_UTR 35.0%
GTACTTTGTGTTGTGTGGAA+TGG - chr1_3:73859853-73859872 None:intergenic 40.0%
GTACTGTACTTTGTGTTGTG+TGG - chr1_3:73859858-73859877 None:intergenic 40.0%
AGGTAGAGAAAGAGAAGCAA+TGG - chr1_3:73859916-73859935 None:intergenic 40.0%
GAAGAATCGGAGAGATTATC+AGG - chr1_3:73860037-73860056 None:intergenic 40.0%
! GTTTTCCAACGTCGTTTGAA+CGG + chr1_3:73860272-73860291 Msa0139920:CDS 40.0%
! GCTGGAACTTTTTGTAAAGG+AGG + chr1_3:73860328-73860347 Msa0139920:CDS 40.0%
TTGGCATAAGCACTTTGCAA+TGG + chr1_3:73860719-73860738 Msa0139920:intron 40.0%
!! CAATGGTTTGGTAGAGCTTA+TGG + chr1_3:73860736-73860755 Msa0139920:intron 40.0%
! CTTATCTCTAAGAGTGAAGC+TGG + chr1_3:73861091-73861110 Msa0139920:intron 40.0%
AGAGTGAAGCTGGACAATAA+TGG + chr1_3:73861101-73861120 Msa0139920:intron 40.0%
! CAACCGAAAATTTGGAACAG+AGG + chr1_3:73861155-73861174 Msa0139920:intron 40.0%
!! GGTCATTTTACACCTTCCTT+TGG - chr1_3:73861259-73861278 None:intergenic 40.0%
! CCTTGTTTGTGTGTCTGAAA+CGG + chr1_3:73861371-73861390 Msa0139920:intron 40.0%
! TTTGTGTGTCTGAAACGGAA+AGG + chr1_3:73861376-73861395 Msa0139920:intron 40.0%
! CGTTACTGATGGTGAAAAGT+AGG + chr1_3:73861448-73861467 Msa0139920:intron 40.0%
ATTCGGTTTCTACGTAGTCT+GGG - chr1_3:73861644-73861663 None:intergenic 40.0%
CTTATACTGGAGTCCAGATT+CGG - chr1_3:73861661-73861680 None:intergenic 40.0%
AATGGCCCAAAACCAAAGAA+AGG + chr1_3:73861777-73861796 Msa0139920:CDS 40.0%
!! GTCTCTCCTTTCTTTGGTTT+TGG - chr1_3:73861786-73861805 None:intergenic 40.0%
ACTACTGTCTCTCCTTTCTT+TGG - chr1_3:73861792-73861811 None:intergenic 40.0%
AAAGAAAGGAGAGACAGTAG+TGG + chr1_3:73861791-73861810 Msa0139920:CDS 40.0%
! AAGAGCTTCAAGTTCCATTC+AGG + chr1_3:73862086-73862105 Msa0139920:intron 40.0%
CAAGTTCCATTCAGGTAGAT+TGG + chr1_3:73862094-73862113 Msa0139920:intron 40.0%
GGCTACACCATAGGTTATTA+TGG + chr1_3:73862120-73862139 Msa0139920:CDS 40.0%
GAAGCCCGGAATAAAACAAA+AGG + chr1_3:73862153-73862172 Msa0139920:CDS 40.0%
!!! ACCGCCTTTTGTTTTATTCC+GGG - chr1_3:73862160-73862179 None:intergenic 40.0%
CTATCTAGACATTGTCGAAG+TGG + chr1_3:73862217-73862236 Msa0139920:intron 40.0%
GAATGCAGTAGGGTTGAATA+AGG + chr1_3:73862473-73862492 Msa0139920:intron 40.0%
TCGACATCCTTCGTTAGTAT+TGG + chr1_3:73862610-73862629 Msa0139920:intron 40.0%
!! CATCCTTCGTTAGTATTGGT+TGG + chr1_3:73862614-73862633 Msa0139920:intron 40.0%
GAGTTTAGTCCTAATCCCAA+AGG - chr1_3:73862713-73862732 None:intergenic 40.0%
GATGCAGACTCCAGAAAATA+AGG - chr1_3:73862894-73862913 None:intergenic 40.0%
!! GGTAATACCTGCTTTTGAAG+AGG + chr1_3:73862956-73862975 Msa0139920:intron 40.0%
GTAAATGGCATGAAAGGACT+TGG - chr1_3:73863074-73863093 None:intergenic 40.0%
! TATGAAACCCTTTTTCCGCT+AGG + chr1_3:73863293-73863312 Msa0139920:intron 40.0%
AACTTCACCTAGCGGAAAAA+GGG - chr1_3:73863303-73863322 None:intergenic 40.0%
TAACTTCACCTAGCGGAAAA+AGG - chr1_3:73863304-73863323 None:intergenic 40.0%
GCTAGGTGAAGTTAGCTATA+TGG + chr1_3:73863310-73863329 Msa0139920:intron 40.0%
ACTCTTACCGAGAATGTTGT+AGG - chr1_3:73863534-73863553 None:intergenic 40.0%
!! AGTTGATGAACACTAGTGAC+AGG - chr1_3:73863562-73863581 None:intergenic 40.0%
GTTCCTTAGCACAAAATCCA+AGG - chr1_3:73863639-73863658 None:intergenic 40.0%
! GATTTTGTGCTAAGGAACCA+AGG + chr1_3:73863641-73863660 Msa0139920:CDS 40.0%
ATCAAAATTGTCGCATAGGC+AGG - chr1_3:73864205-73864224 None:intergenic 40.0%
CTCTCCGATTCTTCTTTCTC+CGG + chr1_3:73860043-73860062 Msa0139920:CDS 45.0%
CTGACCGGAGAAAGAAGAAT+CGG - chr1_3:73860050-73860069 None:intergenic 45.0%
GGTAAAAGCAACGGTAAGAG+TGG + chr1_3:73860241-73860260 Msa0139920:intron 45.0%
TTTCTCCGTTCAAACGACGT+TGG - chr1_3:73860280-73860299 None:intergenic 45.0%
GTCGTTTGAACGGAGAAAGA+TGG + chr1_3:73860282-73860301 Msa0139920:CDS 45.0%
TCTTCCATTGCTGTCATTGC+TGG + chr1_3:73860310-73860329 Msa0139920:CDS 45.0%
AGTTCCAGCAATGACAGCAA+TGG - chr1_3:73860317-73860336 None:intergenic 45.0%
AGAAGTTCCGAAGAAGGTCA+TGG + chr1_3:73861335-73861354 Msa0139920:intron 45.0%
AAACCGACCATGACCTTCTT+CGG - chr1_3:73861345-73861364 None:intergenic 45.0%
CCGTTTCAGACACACAAACA+AGG - chr1_3:73861374-73861393 None:intergenic 45.0%
TGAAACGGAAAGGAGGAGAA+TGG + chr1_3:73861386-73861405 Msa0139920:intron 45.0%
! TGCAGTTGTGTCGTTACTGA+TGG + chr1_3:73861437-73861456 Msa0139920:intron 45.0%
! GATTCGGTTTCTACGTAGTC+TGG - chr1_3:73861645-73861664 None:intergenic 45.0%
GACTACGTAGAAACCGAATC+TGG + chr1_3:73861645-73861664 Msa0139920:CDS 45.0%
CGAATCTGGACTCCAGTATA+AGG + chr1_3:73861659-73861678 Msa0139920:CDS 45.0%
!!! TTTGGTTTTGGGCCATTTCC+GGG - chr1_3:73861774-73861793 None:intergenic 45.0%
!!! CTTTGGTTTTGGGCCATTTC+CGG - chr1_3:73861775-73861794 None:intergenic 45.0%
TCCATTCAGGTAGATTGGGA+TGG + chr1_3:73862099-73862118 Msa0139920:intron 45.0%
! ATGGTCGCATATTTGAAGCC+CGG + chr1_3:73862139-73862158 Msa0139920:CDS 45.0%
GCCCGGAATAAAACAAAAGG+CGG + chr1_3:73862156-73862175 Msa0139920:CDS 45.0%
ATTCAAAGTAGGATCGCACG+AGG + chr1_3:73862306-73862325 Msa0139920:CDS 45.0%
TCTAGAGGGAAAACCCTTTG+TGG + chr1_3:73862549-73862568 Msa0139920:intron 45.0%
GAGCCAACCAATACTAACGA+AGG - chr1_3:73862620-73862639 None:intergenic 45.0%
ACGATAACACCTTGTGGCAA+GGG - chr1_3:73862762-73862781 None:intergenic 45.0%
! TTGCCACAAGGTGTTATCGT+GGG + chr1_3:73862762-73862781 Msa0139920:intron 45.0%
AAACCCACGATAACACCTTG+TGG - chr1_3:73862768-73862787 None:intergenic 45.0%
! TCAGGATATCCAAGTTCTGG+TGG - chr1_3:73863483-73863502 None:intergenic 45.0%
CTCTCAGGATATCCAAGTTC+TGG - chr1_3:73863486-73863505 None:intergenic 45.0%
CCGAGAATGTTGTAGGTCTT+GGG - chr1_3:73863527-73863546 None:intergenic 45.0%
CCCAAGACCTACAACATTCT+CGG + chr1_3:73863524-73863543 Msa0139920:CDS 45.0%
ACCGAGAATGTTGTAGGTCT+TGG - chr1_3:73863528-73863547 None:intergenic 45.0%
! GAGCCTTGGATTTTGTGCTA+AGG + chr1_3:73863633-73863652 Msa0139920:CDS 45.0%
! GAGTCTTGTCTATCAACCCT+TGG - chr1_3:73863661-73863680 None:intergenic 45.0%
GTCTTGCTCTGACATGGATT+CGG - chr1_3:73863833-73863852 None:intergenic 45.0%
CAAGACTACCAGTGAACTGA+TGG + chr1_3:73863847-73863866 Msa0139920:intron 45.0%
GTTCCGAAGAAGGTCATGGT+CGG + chr1_3:73861339-73861358 Msa0139920:intron 50.0%
! GTGTGTCTGAAACGGAAAGG+AGG + chr1_3:73861379-73861398 Msa0139920:intron 50.0%
ATACAGTGCCTGCGCTTAGA+GGG + chr1_3:73861589-73861608 Msa0139920:intron 50.0%
TAATCCTTCCCTCTAAGCGC+AGG - chr1_3:73861600-73861619 None:intergenic 50.0%
GCGCTTAGAGGGAAGGATTA+TGG + chr1_3:73861600-73861619 Msa0139920:CDS 50.0%
CGTGCTGCATCACCTTATAC+TGG - chr1_3:73861674-73861693 None:intergenic 50.0%
AAATTGCAGGACTTGCGACC+CGG + chr1_3:73861753-73861772 Msa0139920:intron 50.0%
GCCATCCCAATCTACCTGAA+TGG - chr1_3:73862103-73862122 None:intergenic 50.0%
GATTGGGATGGCTACACCAT+AGG + chr1_3:73862111-73862130 Msa0139920:CDS 50.0%
AACAAAAGGCGGTTCCTTCG+AGG + chr1_3:73862167-73862186 Msa0139920:CDS 50.0%
TGAAGAGTCTGAACGCCCTT+TGG + chr1_3:73862694-73862713 Msa0139920:intron 50.0%
GAAGAGTCTGAACGCCCTTT+GGG + chr1_3:73862695-73862714 Msa0139920:intron 50.0%
!! TCTGAACGCCCTTTGGGATT+AGG + chr1_3:73862701-73862720 Msa0139920:intron 50.0%
TCGACTTTACCCTTGCCACA+AGG + chr1_3:73862750-73862769 Msa0139920:intron 50.0%
CACGATAACACCTTGTGGCA+AGG - chr1_3:73862763-73862782 None:intergenic 50.0%
! CTTGCCACAAGGTGTTATCG+TGG + chr1_3:73862761-73862780 Msa0139920:intron 50.0%
GCAACAGCCTCTTCAAAAGC+AGG - chr1_3:73862966-73862985 None:intergenic 50.0%
!! GCTTTTGAAGAGGCTGTTGC+AGG + chr1_3:73862966-73862985 Msa0139920:CDS 50.0%
ACTTGGACGTAACACAGCTC+AGG - chr1_3:73863057-73863076 None:intergenic 50.0%
GCACAAAATCCAAGGCTCGT+TGG - chr1_3:73863631-73863650 None:intergenic 50.0%
! CTGGTAGTCTTGCTCTGACA+TGG - chr1_3:73863839-73863858 None:intergenic 50.0%
CATACAGTGCCTGCGCTTAG+AGG + chr1_3:73861588-73861607 Msa0139920:intron 55.0%
GCTGTTGCAGGCATGTCTCT+CGG + chr1_3:73862978-73862997 Msa0139920:CDS 55.0%
CTGTTGCAGGCATGTCTCTC+GGG + chr1_3:73862979-73862998 Msa0139920:CDS 55.0%
TGTTGCAGGCATGTCTCTCG+GGG + chr1_3:73862980-73862999 Msa0139920:CDS 55.0%
TTTACAGGGCCAACGAGCCT+TGG + chr1_3:73863619-73863638 Msa0139920:intron 55.0%
AGTGCCTGCGCTTAGAGGGA+AGG + chr1_3:73861593-73861612 Msa0139920:intron 60.0%
CAGGACTTGCGACCCGGAAA+TGG + chr1_3:73861759-73861778 Msa0139920:intron 60.0%
GTTGCAGGCATGTCTCTCGG+GGG + chr1_3:73862981-73863000 Msa0139920:CDS 60.0%
!! TGTCTCTCGGGGGCATTCGA+AGG + chr1_3:73862991-73863010 Msa0139920:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73859767 73864297 73859767 ID=Msa0139920;Name=Msa0139920
chr1_3 mRNA 73859767 73864297 73859767 ID=Msa0139920-mRNA-1;Parent=Msa0139920;Name=Msa0139920-mRNA-1;_AED=0.32;_eAED=0.32;_QI=124|1|1|1|0.9|0.81|11|454|240
chr1_3 exon 73859767 73859950 73859767 ID=Msa0139920-mRNA-1:exon:25677;Parent=Msa0139920-mRNA-1
chr1_3 exon 73860031 73860064 73860031 ID=Msa0139920-mRNA-1:exon:25678;Parent=Msa0139920-mRNA-1
chr1_3 exon 73860242 73860379 73860242 ID=Msa0139920-mRNA-1:exon:25679;Parent=Msa0139920-mRNA-1
chr1_3 exon 73861595 73861680 73861595 ID=Msa0139920-mRNA-1:exon:25680;Parent=Msa0139920-mRNA-1
chr1_3 exon 73861762 73861812 73861762 ID=Msa0139920-mRNA-1:exon:25681;Parent=Msa0139920-mRNA-1
chr1_3 exon 73862108 73862188 73862108 ID=Msa0139920-mRNA-1:exon:25682;Parent=Msa0139920-mRNA-1
chr1_3 exon 73862283 73862327 73862283 ID=Msa0139920-mRNA-1:exon:25683;Parent=Msa0139920-mRNA-1
chr1_3 exon 73862957 73863012 73862957 ID=Msa0139920-mRNA-1:exon:25684;Parent=Msa0139920-mRNA-1
chr1_3 exon 73863470 73863545 73863470 ID=Msa0139920-mRNA-1:exon:25685;Parent=Msa0139920-mRNA-1
chr1_3 exon 73863626 73863769 73863626 ID=Msa0139920-mRNA-1:exon:25686;Parent=Msa0139920-mRNA-1
chr1_3 exon 73863892 73864297 73863892 ID=Msa0139920-mRNA-1:exon:25687;Parent=Msa0139920-mRNA-1
chr1_3 five_prime_UTR 73859767 73859890 73859767 ID=Msa0139920-mRNA-1:five_prime_utr;Parent=Msa0139920-mRNA-1
chr1_3 CDS 73859891 73859950 73859891 ID=Msa0139920-mRNA-1:cds;Parent=Msa0139920-mRNA-1
chr1_3 CDS 73860031 73860064 73860031 ID=Msa0139920-mRNA-1:cds;Parent=Msa0139920-mRNA-1
chr1_3 CDS 73860242 73860379 73860242 ID=Msa0139920-mRNA-1:cds;Parent=Msa0139920-mRNA-1
chr1_3 CDS 73861595 73861680 73861595 ID=Msa0139920-mRNA-1:cds;Parent=Msa0139920-mRNA-1
chr1_3 CDS 73861762 73861812 73861762 ID=Msa0139920-mRNA-1:cds;Parent=Msa0139920-mRNA-1
chr1_3 CDS 73862108 73862188 73862108 ID=Msa0139920-mRNA-1:cds;Parent=Msa0139920-mRNA-1
chr1_3 CDS 73862283 73862327 73862283 ID=Msa0139920-mRNA-1:cds;Parent=Msa0139920-mRNA-1
chr1_3 CDS 73862957 73863012 73862957 ID=Msa0139920-mRNA-1:cds;Parent=Msa0139920-mRNA-1
chr1_3 CDS 73863470 73863545 73863470 ID=Msa0139920-mRNA-1:cds;Parent=Msa0139920-mRNA-1
chr1_3 CDS 73863626 73863721 73863626 ID=Msa0139920-mRNA-1:cds;Parent=Msa0139920-mRNA-1
chr1_3 three_prime_UTR 73863722 73863769 73863722 ID=Msa0139920-mRNA-1:three_prime_utr;Parent=Msa0139920-mRNA-1
chr1_3 three_prime_UTR 73863892 73864297 73863892 ID=Msa0139920-mRNA-1:three_prime_utr;Parent=Msa0139920-mRNA-1
Gene Sequence

>Msa0139920

ATGGCTTCACTTTTGTCCTTTTCCATTGCTTCTCTTTCTCTACCTAAATCTCAATCTCTGGATCCTGATAATCTCTCCGATTCTTCTTTCTCCGGTAAAAGCAACGGTAAGAGTGGTAGTTGTTGTTTTCCAACGTCGTTTGAACGGAGAAAGATGGTTCTGTCTTCCATTGCTGTCATTGCTGGAACTTTTTGTAAAGGAGGAATTGGTCTTGCATCTGAATTTGCTGACATGCCTGCGCTTAGAGGGAAGGATTATGGCAAATCAAAAATGAAGTACCCAGACTACGTAGAAACCGAATCTGGACTCCAGTATAAGGACTTGCGACCCGGAAATGGCCCAAAACCAAAGAAAGGAGAGACAGTAGTGGTAGATTGGGATGGCTACACCATAGGTTATTATGGTCGCATATTTGAAGCCCGGAATAAAACAAAAGGCGGTTCCTTCGAGGGTGATGATAAGGACTTTTTCAAATTCAAAGTAGGATCGCACGAGGTAATACCTGCTTTTGAAGAGGCTGTTGCAGGCATGTCTCTCGGGGGCATTCGAAGGATAATTGTACCACCAGAACTTGGATATCCTGAGAGTGATTATAATAAAGGTGGCCCAAGACCTACAACATTCTCGGGCCAACGAGCCTTGGATTTTGTGCTAAGGAACCAAGGGTTGATAGACAAGACTCTCTTGTTTGATATTGAGCTAATGAAGATTATTCCAAATTGA

Protein sequence

>Msa0139920

MASLLSFSIASLSLPKSQSLDPDNLSDSSFSGKSNGKSGSCCFPTSFERRKMVLSSIAVIAGTFCKGGIGLASEFADMPALRGKDYGKSKMKYPDYVETESGLQYKDLRPGNGPKPKKGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDFFKFKVGSHEVIPAFEEAVAGMSLGGIRRIIVPPELGYPESDYNKGGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELMKIIPN*