AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589540 MtrunA17_Chr4g0006731 97.417 271 7 0 1 271 1 271 0.0 549
Msa0589540 MtrunA17_Chr7g0242451 72.656 256 67 3 1 256 1 253 9.18e-137 386
Msa0589540 MtrunA17_Chr3g0113401 66.797 256 85 0 1 256 1 256 6.55e-129 366
Msa0589540 MtrunA17_Chr7g0242461 64.844 256 88 1 1 256 1 254 9.54e-128 363
Msa0589540 MtrunA17_Chr7g0242401 67.729 251 79 2 5 255 32 280 3.79e-127 363
Msa0589540 MtrunA17_Chr7g0242431 67.331 251 80 2 5 255 31 279 1.01e-124 357
Msa0589540 MtrunA17_Chr7g0242411 64.940 251 81 4 5 255 1 244 4.33e-116 333
Msa0589540 MtrunA17_Chr7g0242391 57.031 256 105 3 5 256 1 255 1.05e-101 297
Msa0589540 MtrunA17_Chr7g0242441 47.755 245 64 4 5 249 2 182 4.83e-67 207
Msa0589540 MtrunA17_Chr2g0283411 37.712 236 135 4 6 233 4 235 8.24e-52 169
Msa0589540 MtrunA17_Chr2g0283421 39.336 211 122 3 5 209 4 214 2.96e-50 166
Msa0589540 MtrunA17_Chr4g0006701 93.548 62 4 0 221 282 1 62 1.08e-36 126
Msa0589540 MtrunA17_Chr4g0059001 34.742 213 129 4 26 232 49 257 1.49e-33 123
Msa0589540 MtrunA17_Chr2g0283391 29.609 179 99 5 41 209 1 162 2.24e-17 79.0
Msa0589540 MtrunA17_Chr4g0006711 94.595 37 2 0 102 138 1 37 2.57e-16 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589540 AT3G11210.1 64.062 256 92 0 1 256 1 256 9.80e-125 356
Msa0589540 AT2G38180.1 61.328 256 88 4 1 254 1 247 1.90e-108 317
Msa0589540 AT5G62930.1 37.768 233 136 2 5 232 1 229 7.58e-55 177
Msa0589540 AT5G62930.2 37.768 233 136 2 5 232 27 255 2.31e-54 177
Msa0589540 AT5G45920.1 41.429 210 118 3 5 209 2 211 3.49e-54 176
Msa0589540 AT5G45920.4 41.429 210 118 3 5 209 2 211 3.49e-54 176
Msa0589540 AT5G45920.2 40.860 186 105 3 5 185 2 187 4.60e-46 154
Msa0589540 AT5G45920.3 40.860 186 105 3 5 185 2 187 4.60e-46 154
Msa0589540 AT5G62930.3 33.136 169 104 2 69 232 7 171 1.70e-29 110

Find 76 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAATTCATGAAACTTTC+AGG 0.099366 4_2:-12617071 Msa0589540:intron
TTTCCCATTCAAAATGTTTC+TGG 0.167567 4_2:+12615687 None:intergenic
GAATTCAAGGCGTGCTGTTC+AGG 0.251854 4_2:-12618014 Msa0589540:CDS
GACTTAAAGCAGTAATATAT+TGG 0.251971 4_2:-12616278 Msa0589540:intron
TATAGTAGAGGAAGGGAAAA+TGG 0.265842 4_2:-12618820 Msa0589540:exon
TCCTTTGCATGCCCTTGTTA+TGG 0.283924 4_2:+12618903 None:intergenic
TGCCAGCTGATTCTTCAAAT+TGG 0.307583 4_2:+12615627 None:intergenic
GAATCTTCTGCAAACTCATT+TGG 0.330143 4_2:+12615770 None:intergenic
GAAGATTATTATCCATCTTA+AGG 0.337002 4_2:-12617228 Msa0589540:intron
AGCACAATTTGAGGCCTTAC+TGG 0.340515 4_2:+12618792 None:intergenic
GATTCATTTGTCCTCTTTAG+TGG 0.350705 4_2:+12616253 None:intergenic
ACTTTATTCAGAAGCATGTT+TGG 0.363601 4_2:-12616224 Msa0589540:CDS
TAGTTATAGTGATGAAGGTT+GGG 0.383224 4_2:-12618745 Msa0589540:CDS
AAGGCGTGCTGTTCAGGTTC+TGG 0.385053 4_2:-12618008 Msa0589540:CDS
GTGATGACCATTCGATGGTT+TGG 0.395292 4_2:+12615649 None:intergenic
TGCATGCCCTTGTTATGGTC+AGG 0.396477 4_2:+12618908 None:intergenic
AGGCCTCAAATTGTGCTGTT+TGG 0.412684 4_2:-12618786 Msa0589540:CDS
TGAATTTGCGCCTCGTTGAC+TGG 0.414334 4_2:+12617084 None:intergenic
TCTATAGCAACTGGATCATA+TGG 0.419003 4_2:+12615746 None:intergenic
CAACTTAGTTATAGTGATGA+AGG 0.419570 4_2:-12618750 Msa0589540:CDS
ACTTAAAGCAGTAATATATT+GGG 0.420900 4_2:-12616277 Msa0589540:intron
AACTCAGTTAGAGACCTTGC+TGG 0.423717 4_2:+12615600 None:intergenic
CATCCACATCCATCTGGCCT+TGG 0.424382 4_2:-12617290 Msa0589540:CDS
CTATAAATTAAGAATATTTG+TGG 0.426437 4_2:-12618853 Msa0589540:five_prime_UTR
CACTTCAGCAAAGGGATGAT+TGG 0.428841 4_2:-12616156 Msa0589540:CDS
TGCTGTCGAGCAACCATCAT+TGG 0.434351 4_2:-12617345 Msa0589540:CDS
ATATTCTTAATTTATAGACT+TGG 0.445967 4_2:+12618859 None:intergenic
CTACTGTCAATGTCTCCAAC+TGG 0.451353 4_2:-12615715 Msa0589540:CDS
AAAGTTATATCAGGTTTATG+AGG 0.457633 4_2:-12615547 Msa0589540:three_prime_UTR
GATTCCAGTCCGCGTCTTCG+AGG 0.470091 4_2:+12615816 None:intergenic
AGGTCCTCGAAGACGCGGAC+TGG 0.472921 4_2:-12615820 Msa0589540:CDS
CTGGTCTGCACTTCAGCAAA+GGG 0.483151 4_2:-12616164 Msa0589540:CDS
GATACTGCGGTTGGAATTCA+AGG 0.486970 4_2:-12618027 Msa0589540:CDS
TTGGTTATCGTGTACTTTGG+TGG 0.493772 4_2:-12617326 Msa0589540:CDS
TTAGTTATAGTGATGAAGGT+TGG 0.498885 4_2:-12618746 Msa0589540:CDS
TGCTTCTGAATAAAGTCTAC+AGG 0.500632 4_2:+12616231 None:intergenic
TCTATTCATCCACATCCATC+TGG 0.500776 4_2:-12617296 Msa0589540:CDS
ATTGATTTCCAGTGTAGACT+TGG 0.520171 4_2:+12615794 None:intergenic
TTATGCGAGTCTTCTTCGAC+AGG 0.520334 4_2:+12617124 None:intergenic
ATCTCAATTTGAAAACTAAG+AGG 0.521646 4_2:+12615428 None:intergenic
ATGTCAAGGTCATTGACCTC+TGG 0.522967 4_2:-12616183 Msa0589540:CDS
TCATTGGTTATCGTGTACTT+TGG 0.526050 4_2:-12617329 Msa0589540:CDS
TGTGGAATTCAACCTTAAGA+TGG 0.529846 4_2:+12617216 None:intergenic
AGTTATAGTGATGAAGGTTG+GGG 0.537356 4_2:-12618744 Msa0589540:CDS
TGCATTTCCAAACCATCGAA+TGG 0.539312 4_2:-12615656 Msa0589540:CDS
TCTGGTCTGCACTTCAGCAA+AGG 0.543201 4_2:-12616165 Msa0589540:CDS
AATTGGTGATGACCATTCGA+TGG 0.544305 4_2:+12615644 None:intergenic
GAACCAAACAGCACAATTTG+AGG 0.544428 4_2:+12618783 None:intergenic
TGGAATTCATTTGTCACATG+AGG 0.558725 4_2:-12615873 Msa0589540:CDS
AAGTACACGATAACCAATGA+TGG 0.564944 4_2:+12617332 None:intergenic
TACAAACTTGTATTCTCGCA+AGG 0.568561 4_2:-12618712 Msa0589540:intron
CACCAATTTGAAGAATCAGC+TGG 0.569141 4_2:-12615629 Msa0589540:CDS
GGAAAATGGTAGGACCAGTA+AGG 0.570962 4_2:-12618806 Msa0589540:exon
ACATGAGGACCAAGGCCAGA+TGG 0.572819 4_2:+12617281 None:intergenic
GGACCAAGGCCAGATGGATG+TGG 0.575529 4_2:+12617287 None:intergenic
AGTTGTGAAAGAGATATTGA+AGG 0.577845 4_2:-12615840 Msa0589540:CDS
ATATATTGGGACCACTAAAG+AGG 0.585513 4_2:-12616264 Msa0589540:CDS
TGACCTTGACATTCATCTCA+TGG 0.586207 4_2:+12616194 None:intergenic
ATGTTTCTGGAAGTTCCAGT+TGG 0.594171 4_2:+12615700 None:intergenic
GTAGAGGAAGGGAAAATGGT+AGG 0.598344 4_2:-12618816 Msa0589540:exon
TCTGGATACAATATTTCCCA+AGG 0.600454 4_2:-12617990 Msa0589540:intron
ACTATAACTAAGTTGAACAA+TGG 0.604564 4_2:+12618758 None:intergenic
GGAATTCATTTGTCACATGA+GGG 0.607224 4_2:-12615872 Msa0589540:CDS
ACCATAACAAGGGCATGCAA+AGG 0.609434 4_2:-12618904 Msa0589540:five_prime_UTR
ACTGGAATCCAAGTCTACAC+TGG 0.609969 4_2:-12615802 Msa0589540:CDS
ATTGGTACCTGACCATAACA+AGG 0.633707 4_2:-12618915 Msa0589540:five_prime_UTR
TATTCTTCAAGGGGTACATG+AGG 0.652455 4_2:+12617266 None:intergenic
ATTGAAGGTCCTCGAAGACG+CGG 0.659263 4_2:-12615825 Msa0589540:CDS
ATTTGCGCCTCGTTGACTGG+AGG 0.661668 4_2:+12617087 None:intergenic
TTTGCTGAAGTGCAGACCAG+AGG 0.667155 4_2:+12616167 None:intergenic
TCAGCTGGCACAAACCAGCA+AGG 0.667249 4_2:-12615614 Msa0589540:CDS
TACTTACGTGAAGCAAACAT+CGG 0.669235 4_2:+12616132 None:intergenic
CAGTTCTCCTCCAGTCAACG+AGG 0.676220 4_2:-12617094 Msa0589540:CDS
TTGGTACCTGACCATAACAA+GGG 0.713170 4_2:-12618914 Msa0589540:five_prime_UTR
GTGCCATGAGATGAATGTCA+AGG 0.722246 4_2:-12616197 Msa0589540:CDS
CAAGGGGTACATGAGGACCA+AGG 0.723393 4_2:+12617273 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGATTTTTTTTTTGAAT+CGG + chr4_2:12615977-12615996 None:intergenic 10.0%
!!! TTTTTATCATGATTAATTTA+TGG - chr4_2:12616448-12616467 Msa0589540:intron 10.0%
!! TAAATATTATGGTAAAATTA+GGG + chr4_2:12616887-12616906 None:intergenic 10.0%
!! ATATTCTTAATTTATAGACT+TGG + chr4_2:12615482-12615501 None:intergenic 15.0%
!! CTATAAATTAAGAATATTTG+TGG - chr4_2:12615485-12615504 Msa0589540:three_prime_UTR 15.0%
!!! TATTTTCTTTTTAATCCAAA+AGG + chr4_2:12615915-12615934 None:intergenic 15.0%
!! TCAAAAAAAAAATCAATAGA+AGG - chr4_2:12615979-12615998 Msa0589540:intron 15.0%
!! CTAAATATTATGGTAAAATT+AGG + chr4_2:12616888-12616907 None:intergenic 15.0%
!! CAAAATGAATCTAAATATTA+TGG + chr4_2:12616898-12616917 None:intergenic 15.0%
!!! TAATAAAAGTATAACAGAAT+AGG - chr4_2:12617442-12617461 Msa0589540:intron 15.0%
!! ATAATTTCAGAAAATGAAAA+TGG + chr4_2:12617667-12617686 None:intergenic 15.0%
!! TGTAATAAGAAAATCAAAAT+TGG + chr4_2:12617987-12618006 None:intergenic 15.0%
!! AACTCTAATGAATAAATTAT+TGG - chr4_2:12618038-12618057 Msa0589540:CDS 15.0%
!!! TTGTTTTGATACATTTTATA+GGG - chr4_2:12618441-12618460 Msa0589540:intron 15.0%
!!! AAAAGTATTTGAAATGTTTT+TGG - chr4_2:12618765-12618784 Msa0589540:CDS 15.0%
!!! AAAGTATTTGAAATGTTTTT+GGG - chr4_2:12618766-12618785 Msa0589540:CDS 15.0%
!!! TATATTTTATAGTAGAGGAA+GGG - chr4_2:12615511-12615530 Msa0589540:three_prime_UTR 20.0%
!!! ATTTCTCTATAGCATTTTTA+TGG - chr4_2:12616231-12616250 Msa0589540:CDS 20.0%
!!! ATAAAATTTTGAATCAACAC+AGG + chr4_2:12616396-12616415 None:intergenic 20.0%
!!! GATTAATTTATGGTTATTTC+TGG - chr4_2:12616458-12616477 Msa0589540:intron 20.0%
!!! TTTTCTATCTTTATATCCAA+CGG + chr4_2:12616792-12616811 None:intergenic 20.0%
!!! TCATTTTCTGAAATTATTAG+TGG - chr4_2:12617670-12617689 Msa0589540:intron 20.0%
!!! AATATATCTCATGTAACTTT+TGG + chr4_2:12617831-12617850 None:intergenic 20.0%
!! AAAAGTTACATGAGATATAT+TGG - chr4_2:12617830-12617849 Msa0589540:intron 20.0%
!! ACTTAAAGCAGTAATATATT+GGG - chr4_2:12618061-12618080 Msa0589540:intron 20.0%
!! ATTATTTGACGCATTTATTA+AGG - chr4_2:12618352-12618371 Msa0589540:intron 20.0%
!!! CTTGTTTTGATACATTTTAT+AGG - chr4_2:12618440-12618459 Msa0589540:intron 20.0%
!! CTATATTTTATAGTAGAGGA+AGG - chr4_2:12615510-12615529 Msa0589540:three_prime_UTR 25.0%
!! ACTATAACTAAGTTGAACAA+TGG + chr4_2:12615583-12615602 None:intergenic 25.0%
! ATCAACATGCAAAACTAAAA+GGG + chr4_2:12615728-12615747 None:intergenic 25.0%
! TATCAACATGCAAAACTAAA+AGG + chr4_2:12615729-12615748 None:intergenic 25.0%
! TCTCTGAATCTAGATAAATA+TGG - chr4_2:12616033-12616052 Msa0589540:intron 25.0%
!! ATTTCTGGAAGTAATTAATC+AGG - chr4_2:12616473-12616492 Msa0589540:intron 25.0%
!! TTTCTGGAAGTAATTAATCA+GGG - chr4_2:12616474-12616493 Msa0589540:intron 25.0%
! AACAAAATCTTAGACGTTAA+TGG - chr4_2:12616609-12616628 Msa0589540:intron 25.0%
! CATATAAATAAGCGATACAT+AGG + chr4_2:12616719-12616738 None:intergenic 25.0%
! TTTCTATGTCTAAATTCAAC+AGG - chr4_2:12616813-12616832 Msa0589540:intron 25.0%
! TATTATGGTAAAATTAGGGA+GGG + chr4_2:12616883-12616902 None:intergenic 25.0%
! ATATTATGGTAAAATTAGGG+AGG + chr4_2:12616884-12616903 None:intergenic 25.0%
! TGATTATTCCTCATACTTAA+AGG - chr4_2:12616934-12616953 Msa0589540:intron 25.0%
!! ATTTTCTCTGTATTCTTCAA+GGG + chr4_2:12617085-12617104 None:intergenic 25.0%
!! TATTTTCTCTGTATTCTTCA+AGG + chr4_2:12617086-12617105 None:intergenic 25.0%
! GAAGATTATTATCCATCTTA+AGG - chr4_2:12617110-12617129 Msa0589540:CDS 25.0%
!! TAAAAAAAACAGTGATAGTG+TGG + chr4_2:12617143-12617162 None:intergenic 25.0%
! AATCACATAGCATAAATAGA+AGG + chr4_2:12617341-12617360 None:intergenic 25.0%
!! ACAAAAGAGAATATGAGTTT+TGG - chr4_2:12617415-12617434 Msa0589540:intron 25.0%
! TAGGACATAAGGTAAAAAAA+TGG - chr4_2:12617461-12617480 Msa0589540:intron 25.0%
!! GGTAAAAAAATGGTACATTT+TGG - chr4_2:12617471-12617490 Msa0589540:intron 25.0%
! ACATAAAGGTTATAAGCTAT+GGG + chr4_2:12617734-12617753 None:intergenic 25.0%
! AACATAAAGGTTATAAGCTA+TGG + chr4_2:12617735-12617754 None:intergenic 25.0%
! GACTTAAAGCAGTAATATAT+TGG - chr4_2:12618060-12618079 Msa0589540:intron 25.0%
! TTACATACAAGTCTTCAAAT+AGG - chr4_2:12618248-12618267 Msa0589540:intron 25.0%
!!! AAAGTTCTAAATCACAACTT+TGG + chr4_2:12618390-12618409 None:intergenic 25.0%
!! AAAGTTGTGATTTAGAACTT+TGG - chr4_2:12618389-12618408 Msa0589540:intron 25.0%
!! TTTGATACATTTTATAGGGA+TGG - chr4_2:12618445-12618464 Msa0589540:intron 25.0%
!!! TTTTGGGATAAAGTTATATC+AGG - chr4_2:12618782-12618801 Msa0589540:CDS 25.0%
! AAAGTTATATCAGGTTTATG+AGG - chr4_2:12618791-12618810 Msa0589540:CDS 25.0%
! ATCTCAATTTGAAAACTAAG+AGG + chr4_2:12618913-12618932 None:intergenic 25.0%
! GGAGCTATATTTTATAGTAG+AGG - chr4_2:12615506-12615525 Msa0589540:three_prime_UTR 30.0%
CAACTTAGTTATAGTGATGA+AGG - chr4_2:12615588-12615607 Msa0589540:exon 30.0%
TTAGTTATAGTGATGAAGGT+TGG - chr4_2:12615592-12615611 Msa0589540:exon 30.0%
TAGTTATAGTGATGAAGGTT+GGG - chr4_2:12615593-12615612 Msa0589540:exon 30.0%
AAAAAATCAATAGAAGGCAG+TGG - chr4_2:12615985-12616004 Msa0589540:intron 30.0%
ATAACAAAACTATAGCGTAG+TGG + chr4_2:12616173-12616192 None:intergenic 30.0%
GTGTGACAAATTAAACTCAT+TGG + chr4_2:12616257-12616276 None:intergenic 30.0%
GTCACACATTAACTATACAT+AGG - chr4_2:12616270-12616289 Msa0589540:intron 30.0%
! TAGGCAGATATAATTTTGAG+AGG - chr4_2:12616289-12616308 Msa0589540:intron 30.0%
!! ATAATTTTGAGAGGATACTG+CGG - chr4_2:12616298-12616317 Msa0589540:intron 30.0%
ACACAAATGATCAATACCTT+GGG + chr4_2:12616367-12616386 None:intergenic 30.0%
AACACAAATGATCAATACCT+TGG + chr4_2:12616368-12616387 None:intergenic 30.0%
ATGGTTAAGAGATTAACACA+CGG - chr4_2:12616628-12616647 Msa0589540:intron 30.0%
CTTATTTATATGCGTGTGTA+GGG - chr4_2:12616727-12616746 Msa0589540:intron 30.0%
TTGAAGATCACAAAGCAAAA+TGG + chr4_2:12616966-12616985 None:intergenic 30.0%
! TTTTCTCTGTATTCTTCAAG+GGG + chr4_2:12617084-12617103 None:intergenic 30.0%
!! AGGATTAGTCAAACATTGTT+AGG + chr4_2:12617180-12617199 None:intergenic 30.0%
CAATGTTTGACTAATCCTAA+TGG - chr4_2:12617182-12617201 Msa0589540:intron 30.0%
TGTTAAATGGTACCTAGTTA+AGG + chr4_2:12617379-12617398 None:intergenic 30.0%
! GTTCTAACCTGTTTGTTAAA+TGG + chr4_2:12617392-12617411 None:intergenic 30.0%
GTATAACAGAATAGGACATA+AGG - chr4_2:12617450-12617469 Msa0589540:intron 30.0%
TTGGTTTCACAAAAAAACGA+TGG - chr4_2:12617490-12617509 Msa0589540:intron 30.0%
!! AAATAAATGTGCCATTTGTG+GGG + chr4_2:12617766-12617785 None:intergenic 30.0%
!! GAAATAAATGTGCCATTTGT+GGG + chr4_2:12617767-12617786 None:intergenic 30.0%
!! TGAAATAAATGTGCCATTTG+TGG + chr4_2:12617768-12617787 None:intergenic 30.0%
! ACTTTATTCAGAAGCATGTT+TGG - chr4_2:12618114-12618133 Msa0589540:intron 30.0%
! GTCACACATGTCTTATTAAA+AGG - chr4_2:12618411-12618430 Msa0589540:intron 30.0%
AGTTGTGAAAGAGATATTGA+AGG - chr4_2:12618498-12618517 Msa0589540:intron 30.0%
! ACTTCCAGAAACATTTTGAA+TGG - chr4_2:12618647-12618666 Msa0589540:intron 30.0%
! CTTCCAGAAACATTTTGAAT+GGG - chr4_2:12618648-12618667 Msa0589540:intron 30.0%
TTTCCCATTCAAAATGTTTC+TGG + chr4_2:12618654-12618673 None:intergenic 30.0%
TATAGTAGAGGAAGGGAAAA+TGG - chr4_2:12615518-12615537 Msa0589540:three_prime_UTR 35.0%
AGTTATAGTGATGAAGGTTG+GGG - chr4_2:12615594-12615613 Msa0589540:exon 35.0%
TACAAACTTGTATTCTCGCA+AGG - chr4_2:12615626-12615645 Msa0589540:CDS 35.0%
TCTGGATACAATATTTCCCA+AGG - chr4_2:12616348-12616367 Msa0589540:intron 35.0%
! AAATTGACTAGCTGATGCTA+TGG - chr4_2:12616502-12616521 Msa0589540:intron 35.0%
TTTGTATGTATGTGACCAGT+TGG - chr4_2:12616561-12616580 Msa0589540:intron 35.0%
! AGATTTTGTTCGAGGCAATA+GGG + chr4_2:12616599-12616618 None:intergenic 35.0%
! AAGATTTTGTTCGAGGCAAT+AGG + chr4_2:12616600-12616619 None:intergenic 35.0%
!! AACGTCTAAGATTTTGTTCG+AGG + chr4_2:12616607-12616626 None:intergenic 35.0%
AATAAGCGATACATAGGACT+TGG + chr4_2:12616713-12616732 None:intergenic 35.0%
GCTTATTTATATGCGTGTGT+AGG - chr4_2:12616726-12616745 Msa0589540:intron 35.0%
! GGTTGATTCCTTTAAGTATG+AGG + chr4_2:12616945-12616964 None:intergenic 35.0%
AAGTACACGATAACCAATGA+TGG + chr4_2:12617009-12617028 None:intergenic 35.0%
! TCATTGGTTATCGTGTACTT+TGG - chr4_2:12617009-12617028 Msa0589540:intron 35.0%
TGTGGAATTCAACCTTAAGA+TGG + chr4_2:12617125-12617144 None:intergenic 35.0%
CGCAAATTCATGAAACTTTC+AGG - chr4_2:12617267-12617286 Msa0589540:CDS 35.0%
TAACGATGCATACCTTAACT+AGG - chr4_2:12617364-12617383 Msa0589540:intron 35.0%
CTAGGTACCATTTAACAAAC+AGG - chr4_2:12617382-12617401 Msa0589540:intron 35.0%
GCATCAACACTTTAGATCAA+AGG - chr4_2:12617601-12617620 Msa0589540:intron 35.0%
! GTAACTTTATGTGTCGACAT+CGG + chr4_2:12617638-12617657 None:intergenic 35.0%
!! AATAAATGTGCCATTTGTGG+GGG + chr4_2:12617765-12617784 None:intergenic 35.0%
! TCTCATGTAACTTTTGGTCA+TGG + chr4_2:12617825-12617844 None:intergenic 35.0%
!! TGAGATATATTGGTCTTCAG+AGG - chr4_2:12617840-12617859 Msa0589540:intron 35.0%
! TGATTTTGCAGACACAATCA+CGG + chr4_2:12617887-12617906 None:intergenic 35.0%
TGATTGTGTCTGCAAAATCA+AGG - chr4_2:12617887-12617906 Msa0589540:intron 35.0%
ATATATTGGGACCACTAAAG+AGG - chr4_2:12618074-12618093 Msa0589540:intron 35.0%
GATTCATTTGTCCTCTTTAG+TGG + chr4_2:12618088-12618107 None:intergenic 35.0%
TGCTTCTGAATAAAGTCTAC+AGG + chr4_2:12618110-12618129 None:intergenic 35.0%
TACTTACGTGAAGCAAACAT+CGG + chr4_2:12618209-12618228 None:intergenic 35.0%
TGATATTGCAGCTGCAATTT+CGG + chr4_2:12618281-12618300 None:intergenic 35.0%
ATGCTTATGCAGCTTAATTG+TGG + chr4_2:12618334-12618353 None:intergenic 35.0%
TGGAATTCATTTGTCACATG+AGG - chr4_2:12618465-12618484 Msa0589540:intron 35.0%
GGAATTCATTTGTCACATGA+GGG - chr4_2:12618466-12618485 Msa0589540:intron 35.0%
! ATTGATTTCCAGTGTAGACT+TGG + chr4_2:12618547-12618566 None:intergenic 35.0%
GAATCTTCTGCAAACTCATT+TGG + chr4_2:12618571-12618590 None:intergenic 35.0%
TCTATAGCAACTGGATCATA+TGG + chr4_2:12618595-12618614 None:intergenic 35.0%
! GTCTTTTCATCTATAGCAAC+TGG + chr4_2:12618604-12618623 None:intergenic 35.0%
ATTGGTACCTGACCATAACA+AGG - chr4_2:12615423-12615442 Msa0589540:three_prime_UTR 40.0%
TTGGTACCTGACCATAACAA+GGG - chr4_2:12615424-12615443 Msa0589540:three_prime_UTR 40.0%
GAACCAAACAGCACAATTTG+AGG + chr4_2:12615558-12615577 None:intergenic 40.0%
AAGAACAGTACTGCATGCAA+TGG - chr4_2:12615882-12615901 Msa0589540:intron 40.0%
! TGCAATGGAACAGTTCCTTT+TGG - chr4_2:12615897-12615916 Msa0589540:intron 40.0%
TATTCCAGTGTTGTCAATCG+CGG - chr4_2:12616118-12616137 Msa0589540:intron 40.0%
TGGAAGTAATTAATCAGGGC+TGG - chr4_2:12616478-12616497 Msa0589540:intron 40.0%
! GATTTTGTTCGAGGCAATAG+GGG + chr4_2:12616598-12616617 None:intergenic 40.0%
ATCCAACTGTTGAGTGATAC+TGG - chr4_2:12616661-12616680 Msa0589540:intron 40.0%
GGTAAAATTAGGGAGGGATT+TGG + chr4_2:12616877-12616896 None:intergenic 40.0%
TTGGTTATCGTGTACTTTGG+TGG - chr4_2:12617012-12617031 Msa0589540:intron 40.0%
TCTATTCATCCACATCCATC+TGG - chr4_2:12617042-12617061 Msa0589540:intron 40.0%
! TATTCTTCAAGGGGTACATG+AGG + chr4_2:12617075-12617094 None:intergenic 40.0%
! GTTCTGATTGCAACGACTTT+TGG - chr4_2:12617289-12617308 Msa0589540:CDS 40.0%
TTGACAGCGGACAACAAAAT+GGG + chr4_2:12617546-12617565 None:intergenic 40.0%
TTTGACAGCGGACAACAAAA+TGG + chr4_2:12617547-12617566 None:intergenic 40.0%
CCTAAGATAGTGTTTGACAG+CGG + chr4_2:12617559-12617578 None:intergenic 40.0%
!! CTAAAGTGTTGATGCTACGT+AGG + chr4_2:12617596-12617615 None:intergenic 40.0%
TGGGGGAAGATACAACATAA+AGG + chr4_2:12617748-12617767 None:intergenic 40.0%
! AAAATCAAGGTTTTCGCCTC+TGG - chr4_2:12617900-12617919 Msa0589540:intron 40.0%
! AAATCAAGGTTTTCGCCTCT+GGG - chr4_2:12617901-12617920 Msa0589540:intron 40.0%
TGACCTTGACATTCATCTCA+TGG + chr4_2:12618147-12618166 None:intergenic 40.0%
GCTTAATTGTGGCTGCAATA+CGG + chr4_2:12618323-12618342 None:intergenic 40.0%
GACGCATTTATTAAGGATCG+CGG - chr4_2:12618359-12618378 Msa0589540:intron 40.0%
!! ATGTTTCTGGAAGTTCCAGT+TGG + chr4_2:12618641-12618660 None:intergenic 40.0%
TGCATTTCCAAACCATCGAA+TGG - chr4_2:12618682-12618701 Msa0589540:intron 40.0%
!! AATTGGTGATGACCATTCGA+TGG + chr4_2:12618697-12618716 None:intergenic 40.0%
CACCAATTTGAAGAATCAGC+TGG - chr4_2:12618709-12618728 Msa0589540:intron 40.0%
! TGCCAGCTGATTCTTCAAAT+TGG + chr4_2:12618714-12618733 None:intergenic 40.0%
! ACCATAACAAGGGCATGCAA+AGG - chr4_2:12615434-12615453 Msa0589540:three_prime_UTR 45.0%
TCCTTTGCATGCCCTTGTTA+TGG + chr4_2:12615438-12615457 None:intergenic 45.0%
GTAGAGGAAGGGAAAATGGT+AGG - chr4_2:12615522-12615541 Msa0589540:three_prime_UTR 45.0%
GGAAAATGGTAGGACCAGTA+AGG - chr4_2:12615532-12615551 Msa0589540:three_prime_UTR 45.0%
! AGCACAATTTGAGGCCTTAC+TGG + chr4_2:12615549-12615568 None:intergenic 45.0%
! AGGCCTCAAATTGTGCTGTT+TGG - chr4_2:12615552-12615571 Msa0589540:three_prime_UTR 45.0%
!! TTTTGAGAGGATACTGCGGT+TGG - chr4_2:12616302-12616321 Msa0589540:intron 45.0%
GATACTGCGGTTGGAATTCA+AGG - chr4_2:12616311-12616330 Msa0589540:intron 45.0%
GTCCAGTATCACTCAACAGT+TGG + chr4_2:12616666-12616685 None:intergenic 45.0%
ACTGTTGAGTGATACTGGAC+AGG - chr4_2:12616666-12616685 Msa0589540:intron 45.0%
AGTGATACTGGACAGGATAG+AGG - chr4_2:12616673-12616692 Msa0589540:intron 45.0%
GTGATACTGGACAGGATAGA+GGG - chr4_2:12616674-12616693 Msa0589540:intron 45.0%
GATCATCTACAGTCGTTGAG+TGG - chr4_2:12616749-12616768 Msa0589540:intron 45.0%
TTATGCGAGTCTTCTTCGAC+AGG + chr4_2:12617217-12617236 None:intergenic 45.0%
CCGCTGTCAAACACTATCTT+AGG - chr4_2:12617556-12617575 Msa0589540:intron 45.0%
! TATGTGTCGACATCGGTATC+TGG + chr4_2:12617631-12617650 None:intergenic 45.0%
ATGGGCACTAACACATGCAT+TGG + chr4_2:12617716-12617735 None:intergenic 45.0%
GTTGTATCTTCCCCCACAAA+TGG - chr4_2:12617752-12617771 Msa0589540:intron 45.0%
TGCAGACACAATCACGGTTA+TGG + chr4_2:12617881-12617900 None:intergenic 45.0%
! AATCAAGGTTTTCGCCTCTG+GGG - chr4_2:12617902-12617921 Msa0589540:intron 45.0%
GTGCCATGAGATGAATGTCA+AGG - chr4_2:12618141-12618160 Msa0589540:intron 45.0%
ATGTCAAGGTCATTGACCTC+TGG - chr4_2:12618155-12618174 Msa0589540:intron 45.0%
CACTTCAGCAAAGGGATGAT+TGG - chr4_2:12618182-12618201 Msa0589540:intron 45.0%
ACTGGAATCCAAGTCTACAC+TGG - chr4_2:12618536-12618555 Msa0589540:intron 45.0%
CTACTGTCAATGTCTCCAAC+TGG - chr4_2:12618623-12618642 Msa0589540:intron 45.0%
GTGATGACCATTCGATGGTT+TGG + chr4_2:12618692-12618711 None:intergenic 45.0%
AACTCAGTTAGAGACCTTGC+TGG + chr4_2:12618741-12618760 None:intergenic 45.0%
! TGCATGCCCTTGTTATGGTC+AGG + chr4_2:12615433-12615452 None:intergenic 50.0%
CTATCCGCGATTGACAACAC+TGG + chr4_2:12616125-12616144 None:intergenic 50.0%
! GAATTCAAGGCGTGCTGTTC+AGG - chr4_2:12616324-12616343 Msa0589540:intron 50.0%
GTTCGAGGCAATAGGGGATT+CGG + chr4_2:12616592-12616611 None:intergenic 50.0%
ACAGTCGTTGAGTGGTGCAT+CGG - chr4_2:12616757-12616776 Msa0589540:intron 50.0%
GATCCTCTTCGGCTTCTTCA+TGG + chr4_2:12616855-12616874 None:intergenic 50.0%
GGAGGGATTTGGATCCTCTT+CGG + chr4_2:12616866-12616885 None:intergenic 50.0%
TGCTGTCGAGCAACCATCAT+TGG - chr4_2:12616993-12617012 Msa0589540:intron 50.0%
GACAGGCTCTGCAAACCATT+AGG + chr4_2:12617200-12617219 None:intergenic 50.0%
TGAATTTGCGCCTCGTTGAC+TGG + chr4_2:12617257-12617276 None:intergenic 50.0%
!!! TTTTCGCCTCTGGGGCTTTT+GGG - chr4_2:12617910-12617929 Msa0589540:intron 50.0%
TTTGCTGAAGTGCAGACCAG+AGG + chr4_2:12618174-12618193 None:intergenic 50.0%
TCTGGTCTGCACTTCAGCAA+AGG - chr4_2:12618173-12618192 Msa0589540:intron 50.0%
CTGGTCTGCACTTCAGCAAA+GGG - chr4_2:12618174-12618193 Msa0589540:intron 50.0%
ATTGAAGGTCCTCGAAGACG+CGG - chr4_2:12618513-12618532 Msa0589540:intron 50.0%
! AAGGCGTGCTGTTCAGGTTC+TGG - chr4_2:12616330-12616349 Msa0589540:intron 55.0%
GGGGATTCGGATGATCCAAC+TGG + chr4_2:12616579-12616598 None:intergenic 55.0%
!! GCATCGGCTTGTAGTACCGT+TGG - chr4_2:12616773-12616792 Msa0589540:intron 55.0%
GCACCATGAAGAAGCCGAAG+AGG - chr4_2:12616849-12616868 Msa0589540:intron 55.0%
CATCCACATCCATCTGGCCT+TGG - chr4_2:12617048-12617067 Msa0589540:intron 55.0%
ACATGAGGACCAAGGCCAGA+TGG + chr4_2:12617060-12617079 None:intergenic 55.0%
! CAAGGGGTACATGAGGACCA+AGG + chr4_2:12617068-12617087 None:intergenic 55.0%
CAGTTCTCCTCCAGTCAACG+AGG - chr4_2:12617244-12617263 Msa0589540:CDS 55.0%
! ATTTGCGCCTCGTTGACTGG+AGG + chr4_2:12617254-12617273 None:intergenic 55.0%
!!! GTTTTCGCCTCTGGGGCTTT+TGG - chr4_2:12617909-12617928 Msa0589540:intron 55.0%
TCAGCTGGCACAAACCAGCA+AGG - chr4_2:12618724-12618743 Msa0589540:CDS 55.0%
CTGGACAGGATAGAGGGAGC+TGG - chr4_2:12616680-12616699 Msa0589540:intron 60.0%
GGACCAAGGCCAGATGGATG+TGG + chr4_2:12617054-12617073 None:intergenic 60.0%
ATGACGCCCAAAAGCCCCAG+AGG + chr4_2:12617919-12617938 None:intergenic 60.0%
GATTCCAGTCCGCGTCTTCG+AGG + chr4_2:12618525-12618544 None:intergenic 60.0%
AGGTCCTCGAAGACGCGGAC+TGG - chr4_2:12618518-12618537 Msa0589540:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 12615423 12618937 12615423 ID=Msa0589540;Name=Msa0589540
chr4_2 mRNA 12615423 12618937 12615423 ID=Msa0589540-mRNA-1;Parent=Msa0589540;Name=Msa0589540-mRNA-1;_AED=0.34;_eAED=0.34;_QI=114|1|1|1|1|1|6|184|282
chr4_2 exon 12615423 12615898 12615423 ID=Msa0589540-mRNA-1:exon:3671;Parent=Msa0589540-mRNA-1
chr4_2 exon 12616139 12616288 12616139 ID=Msa0589540-mRNA-1:exon:3670;Parent=Msa0589540-mRNA-1
chr4_2 exon 12617072 12617148 12617072 ID=Msa0589540-mRNA-1:exon:3669;Parent=Msa0589540-mRNA-1
chr4_2 exon 12617229 12617369 12617229 ID=Msa0589540-mRNA-1:exon:3668;Parent=Msa0589540-mRNA-1
chr4_2 exon 12617991 12618068 12617991 ID=Msa0589540-mRNA-1:exon:3667;Parent=Msa0589540-mRNA-1
chr4_2 exon 12618713 12618937 12618713 ID=Msa0589540-mRNA-1:exon:3666;Parent=Msa0589540-mRNA-1
chr4_2 five_prime_UTR 12618824 12618937 12618824 ID=Msa0589540-mRNA-1:five_prime_utr;Parent=Msa0589540-mRNA-1
chr4_2 CDS 12618713 12618823 12618713 ID=Msa0589540-mRNA-1:cds;Parent=Msa0589540-mRNA-1
chr4_2 CDS 12617991 12618068 12617991 ID=Msa0589540-mRNA-1:cds;Parent=Msa0589540-mRNA-1
chr4_2 CDS 12617229 12617369 12617229 ID=Msa0589540-mRNA-1:cds;Parent=Msa0589540-mRNA-1
chr4_2 CDS 12617072 12617148 12617072 ID=Msa0589540-mRNA-1:cds;Parent=Msa0589540-mRNA-1
chr4_2 CDS 12616139 12616288 12616139 ID=Msa0589540-mRNA-1:cds;Parent=Msa0589540-mRNA-1
chr4_2 CDS 12615607 12615898 12615607 ID=Msa0589540-mRNA-1:cds;Parent=Msa0589540-mRNA-1
chr4_2 three_prime_UTR 12615423 12615606 12615423 ID=Msa0589540-mRNA-1:three_prime_utr;Parent=Msa0589540-mRNA-1
Gene Sequence

>Msa0589540

ATGGTAGGACCAGTAAGGCCTCAAATTGTGCTGTTTGGTTCTTCCATTGTTCAACTTAGTTATAGTGATGAAGGTTGGGGATCTATTCTTACAAACTTGTATTCTCGCAAGGCAGATATAATTTTGAGAGGATACTGCGGTTGGAATTCAAGGCGTGCTGTTCAGGTTCTGGATACAATATTTCCCAAGAATGCTGTCGAGCAACCATCATTGGTTATCGTGTACTTTGGTGGCAATGATTCTATTCATCCACATCCATCTGGCCTTGGTCCTCATGTACCCCTTGAAGAATACAGAGAAAATATGAAGAAGATTATTATCCATCTTAAGAGCCTGTCGAAGAAGACTCGCATAATATTGCTCAGTTCTCCTCCAGTCAACGAGGCGCAAATTCATGAAACTTTCAGTAATATATTGGGACCACTAAAGAGGACAAATGAATCCTGTAGACTTTATTCAGAAGCATGTTTGGAGTTGTGCCATGAGATGAATGTCAAGGTCATTGACCTCTGGTCTGCACTTCAGCAAAGGGATGATTGGTCCGATGTTTGCTTCACGGATGGAATTCATTTGTCACATGAGGGTAGCAAGATAGTTGTGAAAGAGATATTGAAGGTCCTCGAAGACGCGGACTGGAATCCAAGTCTACACTGGAAATCAATGCCAAATGAGTTTGCAGAAGATTCGCCATATGATCCAGTTGCTATAGATGAAAAGACTACTGTCAATGTCTCCAACTGGAACTTCCAGAAACATTTTGAATGGGAAAAAGCTTTGTGCATTTCCAAACCATCGAATGGTCATCACCAATTTGAAGAATCAGCTGGCACAAACCAGCAAGGTCTCTAA

Protein sequence

>Msa0589540

MVGPVRPQIVLFGSSIVQLSYSDEGWGSILTNLYSRKADIILRGYCGWNSRRAVQVLDTIFPKNAVEQPSLVIVYFGGNDSIHPHPSGLGPHVPLEEYRENMKKIIIHLKSLSKKTRIILLSSPPVNEAQIHETFSNILGPLKRTNESCRLYSEACLELCHEMNVKVIDLWSALQQRDDWSDVCFTDGIHLSHEGSKIVVKEILKVLEDADWNPSLHWKSMPNEFAEDSPYDPVAIDEKTTVNVSNWNFQKHFEWEKALCISKPSNGHHQFEESAGTNQQGL*