AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0595160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595160 MtrunA17_Chr4g0014341 92.470 332 14 2 1 322 1 331 0.0 520
Msa0595160 MtrunA17_Chr4g0065691 32.301 226 137 4 109 322 20 241 7.41e-24 98.6
Msa0595160 MtrunA17_Chr2g0287701 35.185 216 123 5 118 321 29 239 2.81e-20 89.0
Msa0595160 MtrunA17_Chr2g0291431 34.074 135 83 3 140 270 106 238 3.34e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595160 AT1G22850.1 71.959 296 66 3 30 312 36 327 3.51e-130 375
Msa0595160 AT1G22850.2 71.053 266 60 3 30 282 36 297 3.88e-122 353
Msa0595160 AT1G03260.1 31.308 214 142 2 109 321 22 231 4.26e-24 99.8
Msa0595160 AT5G19070.1 34.951 206 130 4 115 318 26 229 5.86e-20 88.6
Msa0595160 AT5G19070.2 39.873 158 92 3 115 270 26 182 1.78e-17 80.5
Msa0595160 AT1G12450.1 27.465 284 171 10 63 322 19 291 3.34e-14 72.4
Msa0595160 AT2G02370.2 25.000 236 160 8 95 322 61 287 2.44e-13 70.1
Msa0595160 AT2G02370.1 25.000 236 160 8 95 322 61 287 2.44e-13 70.1
Msa0595160 AT2G02370.3 25.000 236 160 8 95 322 61 287 2.44e-13 70.1
Msa0595160 AT4G22850.1 29.224 219 143 5 111 320 72 287 2.77e-13 69.7

Find 117 sgRNAs with CRISPR-Local

Find 566 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAACACTGTTTCAAATTA+AGG 0.121851 4_2:-24024436 None:intergenic
CATCTCCATCCAAAACTTTA+AGG 0.164212 4_2:-24024567 None:intergenic
TCTTTGGGGAATTATTTATA+TGG 0.194134 4_2:+24019913 Msa0595160:CDS
GGATAATCGATTATTATTAT+TGG 0.208942 4_2:-24016939 None:intergenic
GTATGTTTATATGCCTAAAT+TGG 0.210185 4_2:+24024871 Msa0595160:three_prime_UTR
GGTTGCATCTGTTCCAATTT+AGG 0.228428 4_2:-24024884 None:intergenic
GACAGAGCAATTGGAGAAAA+TGG 0.248276 4_2:+24019844 Msa0595160:CDS
CTTATTGATGAGAATCTTGT+AGG 0.268397 4_2:+24024387 Msa0595160:three_prime_UTR
TTGCCAATACCTTAAAGTTT+TGG 0.269774 4_2:+24024558 Msa0595160:three_prime_UTR
GACGCTTGGGCTTGGACTCT+TGG 0.281093 4_2:+24023369 Msa0595160:CDS
CCAACACTGTTTCAAATTAA+GGG 0.297488 4_2:-24024435 None:intergenic
TATGTTAGTGCTGGTGCTTT+TGG 0.309524 4_2:+24020520 Msa0595160:CDS
CATCCAAAACTTTAAGGTAT+TGG 0.315273 4_2:-24024561 None:intergenic
CAATGGGAATCAATAAATCT+AGG 0.327035 4_2:+24024727 Msa0595160:three_prime_UTR
AAATAATTCCCCAAAGAAAA+TGG 0.331770 4_2:-24019907 None:intergenic
TGCTTTGAAGGGTACCCTTT+TGG 0.335561 4_2:+24017174 Msa0595160:CDS
TGATTCAAGAAAGTATTAAT+AGG 0.339145 4_2:-24017259 None:intergenic
CAGCTGCTGACGCTTGGGCT+TGG 0.363721 4_2:+24023361 Msa0595160:CDS
TAAGTTTCTTCCGTATGTAT+TGG 0.364297 4_2:+24019948 Msa0595160:CDS
CTCGCTATTGACAGAGCAAT+TGG 0.375749 4_2:+24019835 Msa0595160:CDS
CTAACATAAGCCCATGTTCC+TGG 0.376453 4_2:-24020505 None:intergenic
TAATTGTCATGCAGTTGGTT+GGG 0.378900 4_2:+24020475 Msa0595160:intron
GGCAGGTCTATGATCGGATT+GGG 0.382799 4_2:+24024268 Msa0595160:three_prime_UTR
CTTTGGGGAATTATTTATAT+GGG 0.384365 4_2:+24019914 Msa0595160:CDS
GTGAAGTTTATAATTAATCT+TGG 0.384502 4_2:-24024905 None:intergenic
AAGTTTCTTCCGTATGTATT+GGG 0.384665 4_2:+24019949 Msa0595160:CDS
AGTTGGTTGGGGATGCTTCC+AGG 0.390286 4_2:+24020487 Msa0595160:intron
TAGTTCTTGAACATGCTCAT+AGG 0.394111 4_2:+24024645 Msa0595160:three_prime_UTR
AACAATCAGCTGCTGACGCT+TGG 0.399885 4_2:+24023355 Msa0595160:CDS
CAGTTGCCTCTAGTCTCTAC+TGG 0.399885 4_2:-24024226 None:intergenic
AGCTCAAAGTTATGTAATCT+TGG 0.413168 4_2:-24024927 None:intergenic
TGGGGATGCTTCCAGGAACA+TGG 0.413941 4_2:+24020494 Msa0595160:CDS
TAAATCTAGGGACACACAAA+TGG 0.416423 4_2:+24024740 Msa0595160:three_prime_UTR
CCCTTAATTTGAAACAGTGT+TGG 0.417776 4_2:+24024435 Msa0595160:three_prime_UTR
CAATTCTCTGGCTTCATTGA+AGG 0.420607 4_2:+24017280 Msa0595160:CDS
TGTTCAAGAACTAGTGCAAA+TGG 0.426258 4_2:-24024635 None:intergenic
GGATGAAGGTGCTGCTTTGA+AGG 0.427026 4_2:+24017162 Msa0595160:CDS
TGAGCGTATTCTAAAATTAG+TGG 0.427699 4_2:+24019795 Msa0595160:CDS
AAGTCCGGCTGACATGGTTA+AGG 0.437784 4_2:-24019028 None:intergenic
ACTTTCTTGAATCAATTCTC+TGG 0.437926 4_2:+24017268 Msa0595160:CDS
ACAATCAGCTGCTGACGCTT+GGG 0.440714 4_2:+24023356 Msa0595160:CDS
AGCTACAAACAACGCATATC+CGG 0.440969 4_2:-24018770 None:intergenic
TTGATTCCCATTGTTGTGGA+TGG 0.444183 4_2:-24024717 None:intergenic
AACTAGTGCAAATGGAATCT+AGG 0.446140 4_2:-24024627 None:intergenic
GTCCCATGTTGGTTAGAAGT+TGG 0.448378 4_2:+24024501 Msa0595160:three_prime_UTR
ATCTGAGAAAGAAGAGGAAG+AGG 0.449000 4_2:+24017141 Msa0595160:CDS
CCAGCAAAACACCAGCCAAA+AGG 0.457976 4_2:-24017189 None:intergenic
CCCAAAGAAAATGGCAGCAA+AGG 0.469203 4_2:-24019898 None:intergenic
GCAAAGGGCTCAAACGAAGC+AGG 0.470966 4_2:-24019882 None:intergenic
TTGTTTGTAGCTGTTTATGC+TGG 0.472067 4_2:+24018781 Msa0595160:CDS
AATTGGAGAAAATGGCTTCA+AGG 0.475664 4_2:+24019852 Msa0595160:CDS
AGTCCGGCTGACATGGTTAA+GGG 0.477591 4_2:-24019027 None:intergenic
AGACTATGATAGTGCCGGTA+AGG 0.477903 4_2:-24019062 None:intergenic
TGTAGCTGTTTATGCTGGAT+TGG 0.479159 4_2:+24018786 Msa0595160:CDS
GATGTGGTGTCTTAATCTCT+TGG 0.481882 4_2:+24024586 Msa0595160:three_prime_UTR
CAGCAAAACACCAGCCAAAA+GGG 0.483255 4_2:-24017188 None:intergenic
ACTTACCCATCCACAACAAT+GGG 0.485719 4_2:+24024711 Msa0595160:three_prime_UTR
GAATCTGAACTTAGTTCACT+TGG 0.487591 4_2:+24023328 Msa0595160:CDS
TGACACACATTTGCGAATGA+AGG 0.489429 4_2:+24024247 Msa0595160:three_prime_UTR
TGAGAGAGAGTCAAGGAAGG+TGG 0.490848 4_2:+24024330 Msa0595160:three_prime_UTR
AGATGAGAGAGAGTCAAGGA+AGG 0.496341 4_2:+24024327 Msa0595160:three_prime_UTR
TAAGAATATTGTAATTTACA+AGG 0.505788 4_2:-24024368 None:intergenic
ATAATTGTCATGCAGTTGGT+TGG 0.507926 4_2:+24020474 Msa0595160:intron
AGGCAGGTCTATGATCGGAT+TGG 0.509003 4_2:+24024267 Msa0595160:three_prime_UTR
AGCTGTTTATGCTGGATTGG+AGG 0.512844 4_2:+24018789 Msa0595160:CDS
CCAAAGAAAATGGCAGCAAA+GGG 0.517038 4_2:-24019897 None:intergenic
AGTTCTTGAACATGCTCATA+GGG 0.517403 4_2:+24024646 Msa0595160:three_prime_UTR
GACATGGTTAAGGGAATGGC+AGG 0.519492 4_2:-24019018 None:intergenic
TCAGTGTTATTGATTCTACT+AGG 0.521966 4_2:-24017034 None:intergenic
GGGGATGCTTCCAGGAACAT+GGG 0.521976 4_2:+24020495 Msa0595160:CDS
TAATTTACAAGGGGAATGCT+AGG 0.522207 4_2:-24024357 None:intergenic
AAAGAAGAGGAAGAGGATGA+AGG 0.526036 4_2:+24017148 Msa0595160:CDS
CGTATTCTAAAATTAGTGGA+AGG 0.529552 4_2:+24019799 Msa0595160:CDS
TACTTACCCATCCACAACAA+TGG 0.530494 4_2:+24024710 Msa0595160:three_prime_UTR
AATTGTCATGCAGTTGGTTG+GGG 0.530827 4_2:+24020476 Msa0595160:intron
TTCTTCCGTATGTATTGGGA+AGG 0.534079 4_2:+24019953 Msa0595160:CDS
TTTATTGATTCCCATTGTTG+TGG 0.536217 4_2:-24024721 None:intergenic
AATGGGAATCAATAAATCTA+GGG 0.538341 4_2:+24024728 Msa0595160:three_prime_UTR
TGAACAGGTTATGGTTCAGC+CGG 0.540756 4_2:+24018751 Msa0595160:intron
GGCTGACATGGTTAAGGGAA+TGG 0.542883 4_2:-24019022 None:intergenic
AAATCTAGGGACACACAAAT+GGG 0.543400 4_2:+24024741 Msa0595160:three_prime_UTR
GACTATGATAGTGCCGGTAA+GGG 0.543748 4_2:-24019061 None:intergenic
AAGAATATTGTAATTTACAA+GGG 0.546641 4_2:-24024367 None:intergenic
AATTAAGGGAGCAACACAAA+AGG 0.548323 4_2:-24024421 None:intergenic
TCTGAACTTAGTTCACTTGG+AGG 0.551989 4_2:+24023331 Msa0595160:CDS
TTCCAACTTCTAACCAACAT+GGG 0.552354 4_2:-24024503 None:intergenic
TGATTCCCATTGTTGTGGAT+GGG 0.555740 4_2:-24024716 None:intergenic
GATGAAGGTGCTGCTTTGAA+GGG 0.566343 4_2:+24017163 Msa0595160:CDS
GTGGTGTCTTAATCTCTTGG+TGG 0.571968 4_2:+24024589 Msa0595160:three_prime_UTR
TCAATAACACTGACCCATCT+CGG 0.572891 4_2:+24017044 Msa0595160:CDS
AGGTGAATCTGAGAAAGAAG+AGG 0.574145 4_2:+24017135 Msa0595160:CDS
TGATAGATGAGAGAGAGTCA+AGG 0.582473 4_2:+24024323 Msa0595160:three_prime_UTR
ACATGGGCTTATGTTAGTGC+TGG 0.583860 4_2:+24020511 Msa0595160:CDS
CCATACCTTCCCAATACATA+CGG 0.584626 4_2:-24019958 None:intergenic
AGAATATTGTAATTTACAAG+GGG 0.585844 4_2:-24024366 None:intergenic
GAAGATGATAGACATGGTGG+TGG 0.585967 4_2:-24016899 None:intergenic
GATAGAGACTATGATAGTGC+CGG 0.590119 4_2:-24019067 None:intergenic
ACACATTTGCGAATGAAGGC+AGG 0.592011 4_2:+24024251 Msa0595160:three_prime_UTR
TTTCCAACTTCTAACCAACA+TGG 0.601706 4_2:-24024504 None:intergenic
GTTTGTTTGAGTGAAGAATG+TGG 0.604176 4_2:-24017001 None:intergenic
ATTCCCTTAACCATGTCAGC+CGG 0.606649 4_2:+24019024 Msa0595160:CDS
AGGGAATGGCAGGAATTGCA+AGG 0.618635 4_2:-24019008 None:intergenic
CAAAGGGCTCAAACGAAGCA+GGG 0.626668 4_2:-24019881 None:intergenic
TGTGGATGGGTAAGTACAAG+AGG 0.629249 4_2:-24024703 None:intergenic
AATGAAGGCAGGTCTATGAT+CGG 0.629372 4_2:+24024262 Msa0595160:three_prime_UTR
AGTGGTGGTTAGTCCCATGT+TGG 0.639333 4_2:+24024490 Msa0595160:three_prime_UTR
ATATGTCACGAAGCTTGCAA+AGG 0.645708 4_2:+24023411 Msa0595160:CDS
GTATTCTAAAATTAGTGGAA+GGG 0.647848 4_2:+24019800 Msa0595160:CDS
GCAGGTCTATGATCGGATTG+GGG 0.650277 4_2:+24024269 Msa0595160:three_prime_UTR
CTAGATCCAGTAGAGACTAG+AGG 0.658028 4_2:+24024220 Msa0595160:exon
ACTATCATAGTCTCTATCAG+TGG 0.670984 4_2:+24019072 Msa0595160:CDS
GAATCTAGGAACTAATAACA+AGG 0.681256 4_2:-24024613 None:intergenic
ATATGTAGCAGCTAATGCAG+TGG 0.688625 4_2:-24023392 None:intergenic
TGGAATTCAAGTGCGAGTGG+TGG 0.693938 4_2:+24024475 Msa0595160:intron
TGTTGGAATTCAAGTGCGAG+TGG 0.695192 4_2:+24024472 Msa0595160:intron
TATGAAGAAGATGATAGACA+TGG 0.704292 4_2:-24016905 None:intergenic
GAAGAAGATGATAGACATGG+TGG 0.711512 4_2:-24016902 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTTTATACATTTTTAA+AGG + chr4_2:24019225-24019244 Msa0595160:intron 10.0%
!!! ATTTTGAATCTAATATTTTA+AGG + chr4_2:24019720-24019739 Msa0595160:intron 10.0%
!! TTTCTTTGTAATAAAAAAAA+AGG - chr4_2:24020230-24020249 None:intergenic 10.0%
!!! AATTCTTTATTTTAAAATTG+GGG - chr4_2:24023072-24023091 None:intergenic 10.0%
!! TATTTGTAATATTCAATAAT+AGG + chr4_2:24023471-24023490 Msa0595160:intron 10.0%
!! TTAATGTTAAAATTTATTGT+TGG + chr4_2:24024079-24024098 Msa0595160:intron 10.0%
!! ATATAAACATACATTAAAAA+AGG - chr4_2:24024863-24024882 None:intergenic 10.0%
!! TAAAAAAAAAGGTAAAACTT+TGG - chr4_2:24020219-24020238 None:intergenic 15.0%
!! AATCGAAGTTAAAAATAAAT+TGG - chr4_2:24020415-24020434 None:intergenic 15.0%
!!! AATTTATTTTTAACTTCGAT+TGG + chr4_2:24020414-24020433 Msa0595160:intron 15.0%
!!! AAATTGTGTTTATAATTTGT+GGG + chr4_2:24021066-24021085 Msa0595160:intron 15.0%
!! AATAAAAAATTCTAAACCTT+GGG - chr4_2:24022681-24022700 None:intergenic 15.0%
!! AAGAATATTGTAATTTACAA+GGG - chr4_2:24024370-24024389 None:intergenic 15.0%
!! TAAGAATATTGTAATTTACA+AGG - chr4_2:24024371-24024390 None:intergenic 15.0%
!! GGATAATCGATTATTATTAT+TGG - chr4_2:24016942-24016961 None:intergenic 20.0%
!!! TCATTATCATTTTCACTTTT+GGG - chr4_2:24017088-24017107 None:intergenic 20.0%
!!! ATCATTATCATTTTCACTTT+TGG - chr4_2:24017089-24017108 None:intergenic 20.0%
!!! TGATTCAAGAAAGTATTAAT+AGG - chr4_2:24017262-24017281 None:intergenic 20.0%
!!! TTTTCAGCTTATACTTAATA+TGG + chr4_2:24017332-24017351 Msa0595160:intron 20.0%
!! TTAATTAAGCGCTTAAATAT+AGG - chr4_2:24018051-24018070 None:intergenic 20.0%
!! TGATAAGAGTTTAAATTAAG+TGG + chr4_2:24018686-24018705 Msa0595160:intron 20.0%
!! GATAAGAGTTTAAATTAAGT+GGG + chr4_2:24018687-24018706 Msa0595160:intron 20.0%
!! ATTGAAACATTATGAATCAA+GGG - chr4_2:24018956-24018975 None:intergenic 20.0%
!! ATAATGTTTCAATCTAACTT+TGG + chr4_2:24018963-24018982 Msa0595160:intron 20.0%
!! AACTATAAAAAAAGATCTGA+AGG - chr4_2:24019139-24019158 None:intergenic 20.0%
!!! TATATGAATTTTGCATATTC+TGG - chr4_2:24019167-24019186 None:intergenic 20.0%
!!! TATTTAAGACATCTGAAATT+TGG + chr4_2:24019303-24019322 Msa0595160:intron 20.0%
!!! AATAAGTTGAAAACAGTTTA+TGG + chr4_2:24019545-24019564 Msa0595160:intron 20.0%
!! GTAAAAAAATTATATTTCCC+AGG + chr4_2:24020127-24020146 Msa0595160:intron 20.0%
!!! TTTTCAAAATTTGGTAATCA+AGG + chr4_2:24020154-24020173 Msa0595160:intron 20.0%
!!! AATCACAGTTAAGATATTTT+GGG - chr4_2:24020261-24020280 None:intergenic 20.0%
!!! ATTAGTTTCTATCAAATACA+TGG + chr4_2:24020911-24020930 Msa0595160:intron 20.0%
!! TGTATAATGTATATCTATGT+TGG + chr4_2:24020990-24021009 Msa0595160:intron 20.0%
!! GAAATTGTGTTTATAATTTG+TGG + chr4_2:24021065-24021084 Msa0595160:intron 20.0%
!! ACCATCTTAAAATTTGAATT+GGG - chr4_2:24021134-24021153 None:intergenic 20.0%
!! TACCATCTTAAAATTTGAAT+TGG - chr4_2:24021135-24021154 None:intergenic 20.0%
!!! ATGTGTTAGTTTTTAGAAAT+TGG + chr4_2:24021709-24021728 Msa0595160:intron 20.0%
!!! CAATAGTCAAATTCATTTTA+AGG + chr4_2:24021991-24022010 Msa0595160:intron 20.0%
!! CAATAAAAAATTCTAAACCT+TGG - chr4_2:24022682-24022701 None:intergenic 20.0%
!! TGAATCCATAATTAGAAATA+GGG - chr4_2:24023261-24023280 None:intergenic 20.0%
!! ATGAATCCATAATTAGAAAT+AGG - chr4_2:24023262-24023281 None:intergenic 20.0%
!! ATTTCTAATTATGGATTCAT+TGG + chr4_2:24023262-24023281 Msa0595160:intron 20.0%
!! CAAATACATGTTCTTTAATT+AGG - chr4_2:24023457-24023476 None:intergenic 20.0%
!! AGAATATTGTAATTTACAAG+GGG - chr4_2:24024369-24024388 None:intergenic 20.0%
!! GTGAAGTTTATAATTAATCT+TGG - chr4_2:24024908-24024927 None:intergenic 20.0%
! TTTGTAAGAAGAAAAAGTAG+TGG - chr4_2:24016963-24016982 None:intergenic 25.0%
! GATAAGAAGAAGAAAAAAAG+AGG + chr4_2:24017115-24017134 Msa0595160:CDS 25.0%
! CAACTTAATTAAGCAGTTAT+AGG + chr4_2:24017642-24017661 Msa0595160:intron 25.0%
!! ACTTATTTGAGTTTATCTAC+TGG + chr4_2:24017851-24017870 Msa0595160:intron 25.0%
! CTACATTCAACAGATAATAA+GGG - chr4_2:24018459-24018478 None:intergenic 25.0%
! TCTACATTCAACAGATAATA+AGG - chr4_2:24018460-24018479 None:intergenic 25.0%
! GATTGAAACATTATGAATCA+AGG - chr4_2:24018957-24018976 None:intergenic 25.0%
! CATAAGTGCATATCATATAA+GGG + chr4_2:24019420-24019439 Msa0595160:intron 25.0%
! CACATTTAGTATCTATTAAC+AGG - chr4_2:24019694-24019713 None:intergenic 25.0%
!!! CTAATATTTTAAGGCTTTGT+AGG + chr4_2:24019729-24019748 Msa0595160:intron 25.0%
!!! GTATTCTAAAATTAGTGGAA+GGG + chr4_2:24019800-24019819 Msa0595160:CDS 25.0%
! AAATAATTCCCCAAAGAAAA+TGG - chr4_2:24019910-24019929 None:intergenic 25.0%
!! TCTTTGGGGAATTATTTATA+TGG + chr4_2:24019913-24019932 Msa0595160:CDS 25.0%
!! CTTTGGGGAATTATTTATAT+GGG + chr4_2:24019914-24019933 Msa0595160:CDS 25.0%
! GAACAATTTCAAGATTCAAA+AGG - chr4_2:24020027-24020046 None:intergenic 25.0%
!!! CAAATTTTGAAAACATTCCT+GGG - chr4_2:24020147-24020166 None:intergenic 25.0%
!! GAATCACAGTTAAGATATTT+TGG - chr4_2:24020262-24020281 None:intergenic 25.0%
! AATGCAATTAAGAATGAAAC+TGG + chr4_2:24020350-24020369 Msa0595160:intron 25.0%
! ATGCAATTAAGAATGAAACT+GGG + chr4_2:24020351-24020370 Msa0595160:intron 25.0%
! GAATATATGAAGCTAATGTT+GGG - chr4_2:24020640-24020659 None:intergenic 25.0%
! AGAATATATGAAGCTAATGT+TGG - chr4_2:24020641-24020660 None:intergenic 25.0%
! AAATATTACTGCAATTGTCT+TGG + chr4_2:24020765-24020784 Msa0595160:intron 25.0%
!! GAAAATAGTTATGGTAATGT+GGG + chr4_2:24020849-24020868 Msa0595160:intron 25.0%
!! AAAATAGTTATGGTAATGTG+GGG + chr4_2:24020850-24020869 Msa0595160:intron 25.0%
!! AGCTGAAAATGTTTTATAAG+TGG + chr4_2:24021259-24021278 Msa0595160:intron 25.0%
!! TGAAAATGTTTTATAAGTGG+TGG + chr4_2:24021262-24021281 Msa0595160:intron 25.0%
!! GAAAATGTTTTATAAGTGGT+GGG + chr4_2:24021263-24021282 Msa0595160:intron 25.0%
!! ATCTACTATGTAACTCTTTT+GGG - chr4_2:24021336-24021355 None:intergenic 25.0%
!! AATCTACTATGTAACTCTTT+TGG - chr4_2:24021337-24021356 None:intergenic 25.0%
!! AAGATTAATTTGACCAAGAA+TGG + chr4_2:24021486-24021505 Msa0595160:intron 25.0%
! ATAAATGAGTTAGACTAGAT+AGG + chr4_2:24021599-24021618 Msa0595160:intron 25.0%
! TAAATGAGTTAGACTAGATA+GGG + chr4_2:24021600-24021619 Msa0595160:intron 25.0%
! GAAGAATAATAATGAGATGA+AGG + chr4_2:24021758-24021777 Msa0595160:intron 25.0%
! GAATTTGACTATTGAGATAT+GGG - chr4_2:24021985-24022004 None:intergenic 25.0%
! TGAATTTGACTATTGAGATA+TGG - chr4_2:24021986-24022005 None:intergenic 25.0%
! TTGGATATGCATAAAAAACT+GGG - chr4_2:24022346-24022365 None:intergenic 25.0%
! TTTGGATATGCATAAAAAAC+TGG - chr4_2:24022347-24022366 None:intergenic 25.0%
! TACAAAAAAGCTTGATCAAA+TGG + chr4_2:24022497-24022516 Msa0595160:intron 25.0%
! AAAACGAAATTCTTTGATGA+AGG + chr4_2:24022842-24022861 Msa0595160:intron 25.0%
!!! CTTTATTTTAAAATTGGGGA+AGG - chr4_2:24023068-24023087 None:intergenic 25.0%
! TTAATTAGGATATGGAAAAC+AGG - chr4_2:24023443-24023462 None:intergenic 25.0%
! CATGTTCTTTAATTAGGATA+TGG - chr4_2:24023451-24023470 None:intergenic 25.0%
! ACATTATCTGAACAATGAAT+TGG - chr4_2:24023578-24023597 None:intergenic 25.0%
!!! AGAACATTGATTCATAGAAT+TGG + chr4_2:24023634-24023653 Msa0595160:intron 25.0%
! AGAGTGAGAAGAAAAAATTA+TGG - chr4_2:24023733-24023752 None:intergenic 25.0%
! ACTAAGATTAATTCTAGACA+TGG - chr4_2:24024138-24024157 None:intergenic 25.0%
! AATGGGAATCAATAAATCTA+GGG + chr4_2:24024728-24024747 Msa0595160:three_prime_UTR 25.0%
! GTATGTTTATATGCCTAAAT+TGG + chr4_2:24024871-24024890 Msa0595160:three_prime_UTR 25.0%
TATGAAGAAGATGATAGACA+TGG - chr4_2:24016908-24016927 None:intergenic 30.0%
!!! GATTCTACTAGGTTGTTTTT+TGG - chr4_2:24017026-24017045 None:intergenic 30.0%
!! TCAGTGTTATTGATTCTACT+AGG - chr4_2:24017037-24017056 None:intergenic 30.0%
ACTTTCTTGAATCAATTCTC+TGG + chr4_2:24017268-24017287 Msa0595160:CDS 30.0%
TTTGTTTCCATAAGCTATCA+TGG + chr4_2:24017732-24017751 Msa0595160:intron 30.0%
AATTAGCCATAAACAGCTTA+TGG + chr4_2:24017771-24017790 Msa0595160:intron 30.0%
TGTAAGCTGAAAACAGTTTA+TGG - chr4_2:24017932-24017951 None:intergenic 30.0%
CAACTTCGATATATACTATG+AGG + chr4_2:24017950-24017969 Msa0595160:intron 30.0%
!! GGTTTTAGTGAGAATCTTAA+TGG + chr4_2:24018212-24018231 Msa0595160:intron 30.0%
TAACCTTTCTTCACTATTTC+GGG - chr4_2:24018261-24018280 None:intergenic 30.0%
CTAACCTTTCTTCACTATTT+CGG - chr4_2:24018262-24018281 None:intergenic 30.0%
TCTGACATTACTTACAAGTT+AGG + chr4_2:24018288-24018307 Msa0595160:intron 30.0%
CATAAGCTCTTATATATAGC+TGG + chr4_2:24018406-24018425 Msa0595160:intron 30.0%
TTATTTGGTAAAGCTCATGT+AGG + chr4_2:24018524-24018543 Msa0595160:intron 30.0%
ACATGAGTTTCACCTAATAA+GGG + chr4_2:24018590-24018609 Msa0595160:intron 30.0%
AAGTTATGTATGAGTTGTTG+AGG - chr4_2:24018661-24018680 None:intergenic 30.0%
! TATCTGTTCTTTTGATGAAC+AGG + chr4_2:24018736-24018755 Msa0595160:intron 30.0%
! TTCTTTTGATGAACAGGTTA+TGG + chr4_2:24018742-24018761 Msa0595160:intron 30.0%
!!! TCCTTATTTTCAATACTGCT+TGG + chr4_2:24018833-24018852 Msa0595160:intron 30.0%
TTACGCAAAGATATATCACA+TGG - chr4_2:24018874-24018893 None:intergenic 30.0%
GTAACTAATGTAGCATTTGA+AGG + chr4_2:24018890-24018909 Msa0595160:intron 30.0%
CAGATGTCTTAAATATTGAC+AGG - chr4_2:24019298-24019317 None:intergenic 30.0%
CGTATTTATAAGTGATTGAC+TGG + chr4_2:24019342-24019361 Msa0595160:intron 30.0%
CTGGACTATTTAACATCATA+TGG + chr4_2:24019361-24019380 Msa0595160:intron 30.0%
GCATAAGTGCATATCATATA+AGG + chr4_2:24019419-24019438 Msa0595160:intron 30.0%
!! CTTATTTTCATAAGCTCTCT+AGG - chr4_2:24019531-24019550 None:intergenic 30.0%
TAAACATTTGTGAGACTGTT+TGG - chr4_2:24019600-24019619 None:intergenic 30.0%
!!! ATATTTTAAGGCTTTGTAGG+TGG + chr4_2:24019732-24019751 Msa0595160:intron 30.0%
!! TGAGCGTATTCTAAAATTAG+TGG + chr4_2:24019795-24019814 Msa0595160:CDS 30.0%
!! CGTATTCTAAAATTAGTGGA+AGG + chr4_2:24019799-24019818 Msa0595160:CDS 30.0%
TAAGTTTCTTCCGTATGTAT+TGG + chr4_2:24019948-24019967 Msa0595160:CDS 30.0%
AAGTTTCTTCCGTATGTATT+GGG + chr4_2:24019949-24019968 Msa0595160:CDS 30.0%
CAATGAAAATCAGTACGAAT+TGG - chr4_2:24020003-24020022 None:intergenic 30.0%
TGAATCTTGAAATTGTTCCA+AGG + chr4_2:24020029-24020048 Msa0595160:intron 30.0%
AGTAATGTAATTTCAAGCCT+TGG - chr4_2:24020049-24020068 None:intergenic 30.0%
AGGCTTGAAATTACATTACT+TGG + chr4_2:24020049-24020068 Msa0595160:intron 30.0%
AACATTCCTACTCATGTATT+CGG + chr4_2:24020105-24020124 Msa0595160:intron 30.0%
! TTTTTACCGAATACATGAGT+AGG - chr4_2:24020114-24020133 None:intergenic 30.0%
!! CCAAATTTTGAAAACATTCC+TGG - chr4_2:24020148-24020167 None:intergenic 30.0%
! CCAGGAATGTTTTCAAAATT+TGG + chr4_2:24020145-24020164 Msa0595160:intron 30.0%
TTAACTGTGATTCATCATAG+AGG + chr4_2:24020269-24020288 Msa0595160:intron 30.0%
ACATATAATTGTCATGCAGT+TGG + chr4_2:24020470-24020489 Msa0595160:intron 30.0%
AAGCATGCAAAAAATATCAG+GGG - chr4_2:24020579-24020598 None:intergenic 30.0%
CAAGCATGCAAAAAATATCA+GGG - chr4_2:24020580-24020599 None:intergenic 30.0%
TCAAGCATGCAAAAAATATC+AGG - chr4_2:24020581-24020600 None:intergenic 30.0%
TTCAATCACAAAACACACAT+TGG - chr4_2:24020680-24020699 None:intergenic 30.0%
!! TTTTCCTTTATTTCAGCCAA+AGG - chr4_2:24020825-24020844 None:intergenic 30.0%
GAAAAGCTGGAAAATAGTTA+TGG + chr4_2:24020840-24020859 Msa0595160:intron 30.0%
! GGAAAATAGTTATGGTAATG+TGG + chr4_2:24020848-24020867 Msa0595160:intron 30.0%
! AAATAGTTATGGTAATGTGG+GGG + chr4_2:24020851-24020870 Msa0595160:intron 30.0%
!! GCCCAATTCAAATTTTAAGA+TGG + chr4_2:24021130-24021149 Msa0595160:intron 30.0%
ATAGTAGATTGACGAGTTTA+TGG + chr4_2:24021347-24021366 Msa0595160:intron 30.0%
TAATTTGACCAAGAATGGTT+TGG + chr4_2:24021491-24021510 Msa0595160:intron 30.0%
!!! GATATAGATGACCTTTTTTG+TGG + chr4_2:24021622-24021641 Msa0595160:intron 30.0%
TAAAAACTAACACATCTTCC+TGG - chr4_2:24021704-24021723 None:intergenic 30.0%
GTTGTGAATGTTTATTAGGT+AGG + chr4_2:24021847-24021866 Msa0595160:intron 30.0%
ATGTTTATTAGGTAGGAACT+AGG + chr4_2:24021854-24021873 Msa0595160:intron 30.0%
TATACCAATACTCAGCTTAA+TGG - chr4_2:24021953-24021972 None:intergenic 30.0%
CTAGTGACTAATATTGGAAT+AGG + chr4_2:24022655-24022674 Msa0595160:intron 30.0%
TATTGTAGCACACTTATCAA+AGG + chr4_2:24022697-24022716 Msa0595160:intron 30.0%
ATTGTAGCACACTTATCAAA+GGG + chr4_2:24022698-24022717 Msa0595160:intron 30.0%
! GTCTTTTCCCTGTAATAAAT+TGG + chr4_2:24022909-24022928 Msa0595160:intron 30.0%
!!! TATTTTAAAATTGGGGAAGG+AGG - chr4_2:24023065-24023084 None:intergenic 30.0%
CTGAATTGCATTAGAAAGAA+TGG - chr4_2:24023120-24023139 None:intergenic 30.0%
CATTCTTTCTAATGCAATTC+AGG + chr4_2:24023118-24023137 Msa0595160:intron 30.0%
!! ACCAACCCTATTTCTAATTA+TGG + chr4_2:24023253-24023272 Msa0595160:intron 30.0%
TCCATAATTAGAAATAGGGT+TGG - chr4_2:24023257-24023276 None:intergenic 30.0%
ATGCATTAAGATGGTAAAGT+TGG - chr4_2:24023512-24023531 None:intergenic 30.0%
CAGATAATGTTTCTTTGTCT+TGG + chr4_2:24023588-24023607 Msa0595160:intron 30.0%
CTATGAATCAATGTTCTACA+TGG - chr4_2:24023631-24023650 None:intergenic 30.0%
ATGGTTCAATGAAGAGAATA+TGG - chr4_2:24023714-24023733 None:intergenic 30.0%
CTTATTGATGAGAATCTTGT+AGG + chr4_2:24024387-24024406 Msa0595160:three_prime_UTR 30.0%
CCAACACTGTTTCAAATTAA+GGG - chr4_2:24024438-24024457 None:intergenic 30.0%
TCCAACACTGTTTCAAATTA+AGG - chr4_2:24024439-24024458 None:intergenic 30.0%
! TTGCCAATACCTTAAAGTTT+TGG + chr4_2:24024558-24024577 Msa0595160:three_prime_UTR 30.0%
!! CATCCAAAACTTTAAGGTAT+TGG - chr4_2:24024564-24024583 None:intergenic 30.0%
!!! CAATACCTTAAAGTTTTGGA+TGG + chr4_2:24024562-24024581 Msa0595160:three_prime_UTR 30.0%
GAATCTAGGAACTAATAACA+AGG - chr4_2:24024616-24024635 None:intergenic 30.0%
!! TTTATTGATTCCCATTGTTG+TGG - chr4_2:24024724-24024743 None:intergenic 30.0%
CAATGGGAATCAATAAATCT+AGG + chr4_2:24024727-24024746 Msa0595160:three_prime_UTR 30.0%
GTTTGTTTGAGTGAAGAATG+TGG - chr4_2:24017004-24017023 None:intergenic 35.0%
!! ACAAACGTTTTAACCGAGAT+GGG - chr4_2:24017060-24017079 None:intergenic 35.0%
!! AACAAACGTTTTAACCGAGA+TGG - chr4_2:24017061-24017080 None:intergenic 35.0%
!!! TTTTCTACAAAGCACTGACA+CGG + chr4_2:24017381-24017400 Msa0595160:intron 35.0%
CTGGTGATAATTTGAGAACA+TGG + chr4_2:24017433-24017452 Msa0595160:intron 35.0%
GATGCTACACAAGTTACATT+TGG + chr4_2:24017549-24017568 Msa0595160:intron 35.0%
AAGCTCAATTAGGATCTGTT+AGG + chr4_2:24017614-24017633 Msa0595160:intron 35.0%
AAACTCTCCATGATAGCTTA+TGG - chr4_2:24017742-24017761 None:intergenic 35.0%
ACATGTCCATAAGCTGTTTA+TGG - chr4_2:24017780-24017799 None:intergenic 35.0%
GGCTTATTAGCAACTTATCT+AGG - chr4_2:24018114-24018133 None:intergenic 35.0%
CATAGACAACGTAACATTTG+TGG - chr4_2:24018238-24018257 None:intergenic 35.0%
GACATTACTTACAAGTTAGG+AGG + chr4_2:24018291-24018310 Msa0595160:intron 35.0%
GACATTCTTGTCAAAGAGTT+TGG + chr4_2:24018333-24018352 Msa0595160:intron 35.0%
!! ATAAGAGAGTGCTGGAAAAA+GGG - chr4_2:24018508-24018527 None:intergenic 35.0%
!! AATAAGAGAGTGCTGGAAAA+AGG - chr4_2:24018509-24018528 None:intergenic 35.0%
! TTTTCCAGCACTCTCTTATT+TGG + chr4_2:24018509-24018528 Msa0595160:intron 35.0%
! TTTACCAAATAAGAGAGTGC+TGG - chr4_2:24018516-24018535 None:intergenic 35.0%
GAAATATGTCCCACATAAAG+TGG - chr4_2:24018555-24018574 None:intergenic 35.0%
TGGGACATATTTCTTAAGTG+TGG + chr4_2:24018562-24018581 Msa0595160:intron 35.0%
GGGACATATTTCTTAAGTGT+GGG + chr4_2:24018563-24018582 Msa0595160:intron 35.0%
GGACATATTTCTTAAGTGTG+GGG + chr4_2:24018564-24018583 Msa0595160:intron 35.0%
GACATGAGTTTCACCTAATA+AGG + chr4_2:24018589-24018608 Msa0595160:intron 35.0%
ATAGAGAATTAGATGACGTG+TGG - chr4_2:24018717-24018736 None:intergenic 35.0%
TTGTTTGTAGCTGTTTATGC+TGG + chr4_2:24018781-24018800 Msa0595160:CDS 35.0%
! GCCAAGCAGTATTGAAAATA+AGG - chr4_2:24018837-24018856 None:intergenic 35.0%
TAATGTAGCATTTGAAGGAC+AGG + chr4_2:24018895-24018914 Msa0595160:intron 35.0%
ACTATCATAGTCTCTATCAG+TGG + chr4_2:24019072-24019091 Msa0595160:CDS 35.0%
!! TAACATCATATGGCCTTGTT+TGG + chr4_2:24019371-24019390 Msa0595160:intron 35.0%
ATAAGCTAGTCATCCAAACA+AGG - chr4_2:24019387-24019406 None:intergenic 35.0%
!! TTTTCATAAGCTCTCTAGGA+TGG - chr4_2:24019527-24019546 None:intergenic 35.0%
TCAATCCAGTCAGACTTAAA+TGG + chr4_2:24019644-24019663 Msa0595160:intron 35.0%
TCATTCCATTTAAGTCTGAC+TGG - chr4_2:24019652-24019671 None:intergenic 35.0%
AATTGGAGAAAATGGCTTCA+AGG + chr4_2:24019852-24019871 Msa0595160:CDS 35.0%
TTACTTGGAATGATATCTCC+AGG + chr4_2:24020064-24020083 Msa0595160:intron 35.0%
ATGAGTAGGAATGTTATTCC+TGG - chr4_2:24020100-24020119 None:intergenic 35.0%
ATAATTGTCATGCAGTTGGT+TGG + chr4_2:24020474-24020493 Msa0595160:intron 35.0%
TAATTGTCATGCAGTTGGTT+GGG + chr4_2:24020475-24020494 Msa0595160:intron 35.0%
TTTGTGATTGAAGTACGAGA+TGG + chr4_2:24020688-24020707 Msa0595160:intron 35.0%
TGAAACCTTACCAATAATCC+AGG + chr4_2:24020796-24020815 Msa0595160:intron 35.0%
GTAACCTTTGGCTGAAATAA+AGG + chr4_2:24020818-24020837 Msa0595160:intron 35.0%
TAAGTCTATCCAAGATCCAT+TGG + chr4_2:24021157-24021176 Msa0595160:intron 35.0%
!!! ACCTTACAAACTGGTTTTGT+AGG + chr4_2:24021294-24021313 Msa0595160:intron 35.0%
TCCTACAAAACCAGTTTGTA+AGG - chr4_2:24021298-24021317 None:intergenic 35.0%
!!! CTATGTAACTCTTTTGGGTT+AGG - chr4_2:24021331-24021350 None:intergenic 35.0%
TTGTGTCACATCCACAAAAA+AGG - chr4_2:24021636-24021655 None:intergenic 35.0%
GCTGGTTGTGAATGTTTATT+AGG + chr4_2:24021843-24021862 Msa0595160:intron 35.0%
GGTTTCACTACTTAGAAATC+AGG - chr4_2:24022047-24022066 None:intergenic 35.0%
AGTAACTTCCCATGTTATTC+AGG + chr4_2:24022188-24022207 Msa0595160:intron 35.0%
TCCAAACTTAAATGTGACGT+AGG + chr4_2:24022361-24022380 Msa0595160:intron 35.0%
! TCCTACGTCACATTTAAGTT+TGG - chr4_2:24022365-24022384 None:intergenic 35.0%
AGCATTGCAAAGGATAGAAT+TGG + chr4_2:24022474-24022493 Msa0595160:intron 35.0%
TTCCAATATTAGTCACTAGC+TGG - chr4_2:24022654-24022673 None:intergenic 35.0%
TTGTAGCACACTTATCAAAG+GGG + chr4_2:24022699-24022718 Msa0595160:intron 35.0%
!! AAAAGAGTTCTGAGTTGACA+AGG + chr4_2:24022722-24022741 Msa0595160:intron 35.0%
!! AAAGAGTTCTGAGTTGACAA+GGG + chr4_2:24022723-24022742 Msa0595160:intron 35.0%
AGTTGTAGGAATAATGAGAG+AGG + chr4_2:24022774-24022793 Msa0595160:intron 35.0%
ATTCTGTTATAGCAGAGAGA+TGG + chr4_2:24022813-24022832 Msa0595160:intron 35.0%
GGGAAAAGACAATAACAATC+TGG - chr4_2:24022899-24022918 None:intergenic 35.0%
GCTCAGTTCAAAGAACAAAA+TGG - chr4_2:24023154-24023173 None:intergenic 35.0%
AGTTGAGAATCTGTCTAACA+TGG - chr4_2:24023221-24023240 None:intergenic 35.0%
AAGCAGCAGTAACATTAAAG+AGG - chr4_2:24023291-24023310 None:intergenic 35.0%
GAATCTGAACTTAGTTCACT+TGG + chr4_2:24023328-24023347 Msa0595160:CDS 35.0%
GGTAAAGTTGGATGTTTACT+TGG - chr4_2:24023500-24023519 None:intergenic 35.0%
TACCATCTTAATGCATCGTT+AGG + chr4_2:24023516-24023535 Msa0595160:intron 35.0%
ACCATCTTAATGCATCGTTA+GGG + chr4_2:24023517-24023536 Msa0595160:intron 35.0%
AATGTTTCTTTGTCTTGGAG+TGG + chr4_2:24023593-24023612 Msa0595160:intron 35.0%
ATGTTTCTTTGTCTTGGAGT+GGG + chr4_2:24023594-24023613 Msa0595160:intron 35.0%
ACTAATAGTCTATCTAGCAG+TGG + chr4_2:24023662-24023681 Msa0595160:intron 35.0%
AACCTATGTCAGGACTATAA+AGG - chr4_2:24023827-24023846 None:intergenic 35.0%
AAATACAAATCCGACTGCAA+GGG - chr4_2:24023874-24023893 None:intergenic 35.0%
!!! TCATGCTCCAACTTGTTTTT+TGG + chr4_2:24023909-24023928 Msa0595160:intron 35.0%
AACAGGTCCAAAAAACAAGT+TGG - chr4_2:24023919-24023938 None:intergenic 35.0%
ATAATCGGATCAAGATTGGA+TGG - chr4_2:24023957-24023976 None:intergenic 35.0%
CTAGATAATCGGATCAAGAT+TGG - chr4_2:24023961-24023980 None:intergenic 35.0%
AGTAACGCGATCTAGATAAT+CGG - chr4_2:24023972-24023991 None:intergenic 35.0%
ACTTCTTATCACTACAATGC+AGG + chr4_2:24024175-24024194 Msa0595160:intron 35.0%
TAATTTACAAGGGGAATGCT+AGG - chr4_2:24024360-24024379 None:intergenic 35.0%
AATTAAGGGAGCAACACAAA+AGG - chr4_2:24024424-24024443 None:intergenic 35.0%
! CCCTTAATTTGAAACAGTGT+TGG + chr4_2:24024435-24024454 Msa0595160:three_prime_UTR 35.0%
TTCCAACTTCTAACCAACAT+GGG - chr4_2:24024506-24024525 None:intergenic 35.0%
TTTCCAACTTCTAACCAACA+TGG - chr4_2:24024507-24024526 None:intergenic 35.0%
CATCTCCATCCAAAACTTTA+AGG - chr4_2:24024570-24024589 None:intergenic 35.0%
!!! TAAAGTTTTGGATGGAGATG+TGG + chr4_2:24024570-24024589 Msa0595160:three_prime_UTR 35.0%
AACTAGTGCAAATGGAATCT+AGG - chr4_2:24024630-24024649 None:intergenic 35.0%
TGTTCAAGAACTAGTGCAAA+TGG - chr4_2:24024638-24024657 None:intergenic 35.0%
TAGTTCTTGAACATGCTCAT+AGG + chr4_2:24024645-24024664 Msa0595160:three_prime_UTR 35.0%
AGTTCTTGAACATGCTCATA+GGG + chr4_2:24024646-24024665 Msa0595160:three_prime_UTR 35.0%
TAAATCTAGGGACACACAAA+TGG + chr4_2:24024740-24024759 Msa0595160:three_prime_UTR 35.0%
AAATCTAGGGACACACAAAT+GGG + chr4_2:24024741-24024760 Msa0595160:three_prime_UTR 35.0%
GAAGAAGATGATAGACATGG+TGG - chr4_2:24016905-24016924 None:intergenic 40.0%
TCAATAACACTGACCCATCT+CGG + chr4_2:24017044-24017063 Msa0595160:CDS 40.0%
AGGTGAATCTGAGAAAGAAG+AGG + chr4_2:24017135-24017154 Msa0595160:CDS 40.0%
ATCTGAGAAAGAAGAGGAAG+AGG + chr4_2:24017141-24017160 Msa0595160:CDS 40.0%
AAAGAAGAGGAAGAGGATGA+AGG + chr4_2:24017148-24017167 Msa0595160:CDS 40.0%
!!! GTTTTGCTGGTTGGTTTTGT+TGG + chr4_2:24017202-24017221 Msa0595160:CDS 40.0%
!! TTGGTGGTTTTGCTTCTGTT+GGG + chr4_2:24017221-24017240 Msa0595160:CDS 40.0%
! CAATTCTCTGGCTTCATTGA+AGG + chr4_2:24017280-24017299 Msa0595160:CDS 40.0%
!! TTTCTACAAAGCACTGACAC+GGG + chr4_2:24017382-24017401 Msa0595160:intron 40.0%
ACGTGTCCTATTGGAGTAAA+AGG + chr4_2:24017482-24017501 Msa0595160:intron 40.0%
! CTGACACCTTTTACTCCAAT+AGG - chr4_2:24017491-24017510 None:intergenic 40.0%
!! GAGTAAAAGGTGTCAGACAT+TGG + chr4_2:24017495-24017514 Msa0595160:intron 40.0%
CACTTGTGAGACAATTTGAG+AGG + chr4_2:24017880-24017899 Msa0595160:intron 40.0%
CCAAACAGTAGTGCTTATGT+CGG + chr4_2:24018080-24018099 Msa0595160:intron 40.0%
GAATAAGGCTGCATTTGCAT+TGG - chr4_2:24018135-24018154 None:intergenic 40.0%
!! TGCAAATGCAGCCTTATTCA+CGG + chr4_2:24018136-24018155 Msa0595160:intron 40.0%
TTCTTCCAAACCCGTGAATA+AGG - chr4_2:24018150-24018169 None:intergenic 40.0%
AATGTATACCAGTCTGTGTC+TGG + chr4_2:24018191-24018210 Msa0595160:intron 40.0%
ATGCCCGAAATAGTGAAGAA+AGG + chr4_2:24018255-24018274 Msa0595160:intron 40.0%
ATATAGCTGGTGTATGTTGC+AGG + chr4_2:24018419-24018438 Msa0595160:intron 40.0%
TATGTCCCACATAAAGTGGT+GGG - chr4_2:24018551-24018570 None:intergenic 40.0%
ATATGTCCCACATAAAGTGG+TGG - chr4_2:24018552-24018571 None:intergenic 40.0%
CTAACACTCACTCCCTTATT+AGG - chr4_2:24018605-24018624 None:intergenic 40.0%
AGCTACAAACAACGCATATC+CGG - chr4_2:24018773-24018792 None:intergenic 40.0%
TGTAGCTGTTTATGCTGGAT+TGG + chr4_2:24018786-24018805 Msa0595160:CDS 40.0%
AAGGGATCCAAAAAGAAGTC+CGG - chr4_2:24019046-24019065 None:intergenic 40.0%
! CTTCTTTTTGGATCCCTTAC+CGG + chr4_2:24019048-24019067 Msa0595160:CDS 40.0%
! GATAGAGACTATGATAGTGC+CGG - chr4_2:24019070-24019089 None:intergenic 40.0%
!!! TTTTAAGGCTTTGTAGGTGG+CGG + chr4_2:24019735-24019754 Msa0595160:intron 40.0%
GACAGAGCAATTGGAGAAAA+TGG + chr4_2:24019844-24019863 Msa0595160:CDS 40.0%
CCAAAGAAAATGGCAGCAAA+GGG - chr4_2:24019900-24019919 None:intergenic 40.0%
!!! CCTTTGCTGCCATTTTCTTT+GGG + chr4_2:24019898-24019917 Msa0595160:CDS 40.0%
!!! CTTTGCTGCCATTTTCTTTG+GGG + chr4_2:24019899-24019918 Msa0595160:CDS 40.0%
TTCTTCCGTATGTATTGGGA+AGG + chr4_2:24019953-24019972 Msa0595160:CDS 40.0%
CCATACCTTCCCAATACATA+CGG - chr4_2:24019961-24019980 None:intergenic 40.0%
AATTGTCATGCAGTTGGTTG+GGG + chr4_2:24020476-24020495 Msa0595160:intron 40.0%
!!! TATGTTAGTGCTGGTGCTTT+TGG + chr4_2:24020520-24020539 Msa0595160:CDS 40.0%
ACACATTGGATGCAAAGAAG+AGG - chr4_2:24020666-24020685 None:intergenic 40.0%
GAAGTACGAGATGGTGATAA+AGG + chr4_2:24020697-24020716 Msa0595160:intron 40.0%
GGTTACCTGGATTATTGGTA+AGG - chr4_2:24020804-24020823 None:intergenic 40.0%
CCAAAGGTTACCTGGATTAT+TGG - chr4_2:24020809-24020828 None:intergenic 40.0%
CCAATAATCCAGGTAACCTT+TGG + chr4_2:24020806-24020825 Msa0595160:intron 40.0%
TATTTCAGCCAAAGGTTACC+TGG - chr4_2:24020817-24020836 None:intergenic 40.0%
GGCTGAAATAAAGGAAAAGC+TGG + chr4_2:24020827-24020846 Msa0595160:intron 40.0%
TCTGTTGAGAAGTCTTGCAT+TGG + chr4_2:24021028-24021047 Msa0595160:intron 40.0%
CTAACTCGTCTCAACAAAAC+CGG - chr4_2:24021110-24021129 None:intergenic 40.0%
AGCTCATATCTCATCTGATG+TGG - chr4_2:24021243-24021262 None:intergenic 40.0%
GTTTCTTACGTCCTGTCTAT+GGG + chr4_2:24021369-24021388 Msa0595160:intron 40.0%
TAAAAGACCTAGACAGCAGA+AGG - chr4_2:24021441-24021460 None:intergenic 40.0%
GCTTTATGCCTAAGCTTCTT+TGG + chr4_2:24021544-24021563 Msa0595160:intron 40.0%
TAATCCAGCCAAAGAAGCTT+AGG - chr4_2:24021555-24021574 None:intergenic 40.0%
TAGGAATGCAATGGAACTCT+TGG - chr4_2:24021791-24021810 None:intergenic 40.0%
ACGACTCTATAGGAATGCAA+TGG - chr4_2:24021800-24021819 None:intergenic 40.0%
CATTCCTATAGAGTCGTTCA+GGG + chr4_2:24021803-24021822 Msa0595160:intron 40.0%
GACTATTGAGATATGGGAAG+TGG - chr4_2:24021979-24021998 None:intergenic 40.0%
CTTAGAAATCAGGTCAGGTT+TGG - chr4_2:24022037-24022056 None:intergenic 40.0%
CACTACTTAGAAATCAGGTC+AGG - chr4_2:24022042-24022061 None:intergenic 40.0%
! GTTAATTGGTGCTCGAGTTA+TGG - chr4_2:24022120-24022139 None:intergenic 40.0%
AACTCGAGCACCAATTAACT+AGG + chr4_2:24022121-24022140 Msa0595160:intron 40.0%
TAGCTCTCTATTTGAGTCAG+GGG - chr4_2:24022147-24022166 None:intergenic 40.0%
GTAGCTCTCTATTTGAGTCA+GGG - chr4_2:24022148-24022167 None:intergenic 40.0%
TGTAGCTCTCTATTTGAGTC+AGG - chr4_2:24022149-24022168 None:intergenic 40.0%
CTATGAGGCCTGAATAACAT+GGG - chr4_2:24022199-24022218 None:intergenic 40.0%
AATGAGGACTGACCGAAAAT+TGG + chr4_2:24022234-24022253 Msa0595160:intron 40.0%
! GAAAAGTGGCAGCCAATTTT+CGG - chr4_2:24022249-24022268 None:intergenic 40.0%
!!! AAATTGGCTGCCACTTTTCA+TGG + chr4_2:24022250-24022269 Msa0595160:intron 40.0%
! TCATGGCCCTTTCCAAATTT+TGG + chr4_2:24022267-24022286 Msa0595160:intron 40.0%
CTCTGGCCAAAATTTGGAAA+GGG - chr4_2:24022276-24022295 None:intergenic 40.0%
ACTCTGGCCAAAATTTGGAA+AGG - chr4_2:24022277-24022296 None:intergenic 40.0%
!! TTCCAAATTTTGGCCAGAGT+TGG + chr4_2:24022277-24022296 Msa0595160:intron 40.0%
GTACAAGCTTAACCTACCAA+CGG + chr4_2:24022307-24022326 Msa0595160:intron 40.0%
GTTGAACTTAAAGCTACCCA+TGG - chr4_2:24022413-24022432 None:intergenic 40.0%
! GGGAAAAGTAAGCATTGCAA+AGG + chr4_2:24022464-24022483 Msa0595160:intron 40.0%
GCTCGATTGAAAATGTCACA+CGG + chr4_2:24022527-24022546 Msa0595160:intron 40.0%
CTCGATTGAAAATGTCACAC+GGG + chr4_2:24022528-24022547 Msa0595160:intron 40.0%
ATAGAATCAGCTTGTCCTCA+AGG - chr4_2:24022594-24022613 None:intergenic 40.0%
GTATTGTTAGCATCGTGAAG+TGG + chr4_2:24022622-24022641 Msa0595160:intron 40.0%
TTAGCATCGTGAAGTGGAAT+GGG + chr4_2:24022628-24022647 Msa0595160:intron 40.0%
CTAATATTGGAATAGGCCCA+AGG + chr4_2:24022662-24022681 Msa0595160:intron 40.0%
AATAGTTTATCAGCCCAAGC+CGG - chr4_2:24022873-24022892 None:intergenic 40.0%
GCTGCTGCCAATTTATTACA+GGG - chr4_2:24022919-24022938 None:intergenic 40.0%
AGCTGCTGCCAATTTATTAC+AGG - chr4_2:24022920-24022939 None:intergenic 40.0%
AGCTTGACCTTGTGTTCTTT+AGG + chr4_2:24022970-24022989 Msa0595160:intron 40.0%
GCTTGACCTTGTGTTCTTTA+GGG + chr4_2:24022971-24022990 Msa0595160:intron 40.0%
CCATTTAACAACTGTCTCTG+AGG - chr4_2:24023011-24023030 None:intergenic 40.0%
CCTCAGAGACAGTTGTTAAA+TGG + chr4_2:24023008-24023027 Msa0595160:intron 40.0%
TCAACCAAGTGTTATCCGAT+GGG - chr4_2:24023176-24023195 None:intergenic 40.0%
ATCAACCAAGTGTTATCCGA+TGG - chr4_2:24023177-24023196 None:intergenic 40.0%
!! GAAATAGGGTTGGTATAGCA+AGG - chr4_2:24023247-24023266 None:intergenic 40.0%
TCTGAACTTAGTTCACTTGG+AGG + chr4_2:24023331-24023350 Msa0595160:CDS 40.0%
ATATGTAGCAGCTAATGCAG+TGG - chr4_2:24023395-24023414 None:intergenic 40.0%
ATATGTCACGAAGCTTGCAA+AGG + chr4_2:24023411-24023430 Msa0595160:CDS 40.0%
TCCCTAACGATGCATTAAGA+TGG - chr4_2:24023521-24023540 None:intergenic 40.0%
AATACAAATCCGACTGCAAG+GGG - chr4_2:24023873-24023892 None:intergenic 40.0%
GAAATACAAATCCGACTGCA+AGG - chr4_2:24023875-24023894 None:intergenic 40.0%
GGCTGCTAACTTTAGTAAAC+AGG - chr4_2:24023936-24023955 None:intergenic 40.0%
TTGAAAACTCCAGAGGACAA+GGG - chr4_2:24024042-24024061 None:intergenic 40.0%
ATTGAAAACTCCAGAGGACA+AGG - chr4_2:24024043-24024062 None:intergenic 40.0%
CACATCATTGAAAACTCCAG+AGG - chr4_2:24024049-24024068 None:intergenic 40.0%
TGACACACATTTGCGAATGA+AGG + chr4_2:24024247-24024266 Msa0595160:three_prime_UTR 40.0%
AATGAAGGCAGGTCTATGAT+CGG + chr4_2:24024262-24024281 Msa0595160:three_prime_UTR 40.0%
TGATAGATGAGAGAGAGTCA+AGG + chr4_2:24024323-24024342 Msa0595160:three_prime_UTR 40.0%
GATGTGGTGTCTTAATCTCT+TGG + chr4_2:24024586-24024605 Msa0595160:three_prime_UTR 40.0%
TACTTACCCATCCACAACAA+TGG + chr4_2:24024710-24024729 Msa0595160:three_prime_UTR 40.0%
ACTTACCCATCCACAACAAT+GGG + chr4_2:24024711-24024730 Msa0595160:three_prime_UTR 40.0%
TGATTCCCATTGTTGTGGAT+GGG - chr4_2:24024719-24024738 None:intergenic 40.0%
TTGATTCCCATTGTTGTGGA+TGG - chr4_2:24024720-24024739 None:intergenic 40.0%
GGTTGCATCTGTTCCAATTT+AGG - chr4_2:24024887-24024906 None:intergenic 40.0%
GAAGATGATAGACATGGTGG+TGG - chr4_2:24016902-24016921 None:intergenic 45.0%
!! GATGAAGGTGCTGCTTTGAA+GGG + chr4_2:24017163-24017182 Msa0595160:CDS 45.0%
!!! TGCTTTGAAGGGTACCCTTT+TGG + chr4_2:24017174-24017193 Msa0595160:CDS 45.0%
CAGCAAAACACCAGCCAAAA+GGG - chr4_2:24017191-24017210 None:intergenic 45.0%
!!! TTGCTGGTTGGTTTTGTTGG+TGG + chr4_2:24017205-24017224 Msa0595160:CDS 45.0%
!!! GTTGGTGGTTTTGCTTCTGT+TGG + chr4_2:24017220-24017239 Msa0595160:CDS 45.0%
TGACACTGACACGTAAACAC+TGG + chr4_2:24017414-24017433 Msa0595160:intron 45.0%
TGCATGTGTACGTGTCCTAT+TGG + chr4_2:24017473-24017492 Msa0595160:intron 45.0%
ACATTGGCACATGTCAGACA+CGG + chr4_2:24017511-24017530 Msa0595160:intron 45.0%
GCACTCGTGAAAGCTCAATT+AGG + chr4_2:24017604-24017623 Msa0595160:intron 45.0%
GAAACAGCCTCGTAGTGTTA+GGG - chr4_2:24017826-24017845 None:intergenic 45.0%
CCGACATAAGCACTACTGTT+TGG - chr4_2:24018083-24018102 None:intergenic 45.0%
!! GCAAATGCAGCCTTATTCAC+GGG + chr4_2:24018137-24018156 Msa0595160:intron 45.0%
CACTAAAACCAGACACAGAC+TGG - chr4_2:24018202-24018221 None:intergenic 45.0%
TAGGTCCCACCACTTTATGT+GGG + chr4_2:24018543-24018562 Msa0595160:intron 45.0%
TGAACAGGTTATGGTTCAGC+CGG + chr4_2:24018751-24018770 Msa0595160:intron 45.0%
! AGCTGTTTATGCTGGATTGG+AGG + chr4_2:24018789-24018808 Msa0595160:CDS 45.0%
ATTCCCTTAACCATGTCAGC+CGG + chr4_2:24019024-24019043 Msa0595160:CDS 45.0%
AAAAAGAAGTCCGGCTGACA+TGG - chr4_2:24019037-24019056 None:intergenic 45.0%
! ATGTCAGCCGGACTTCTTTT+TGG + chr4_2:24019036-24019055 Msa0595160:CDS 45.0%
!! GACTATGATAGTGCCGGTAA+GGG - chr4_2:24019064-24019083 None:intergenic 45.0%
!! AGACTATGATAGTGCCGGTA+AGG - chr4_2:24019065-24019084 None:intergenic 45.0%
CTCGCTATTGACAGAGCAAT+TGG + chr4_2:24019835-24019854 Msa0595160:CDS 45.0%
!!! CCCTTTGCTGCCATTTTCTT+TGG + chr4_2:24019897-24019916 Msa0595160:CDS 45.0%
CCCAAAGAAAATGGCAGCAA+AGG - chr4_2:24019901-24019920 None:intergenic 45.0%
CCGTATGTATTGGGAAGGTA+TGG + chr4_2:24019958-24019977 Msa0595160:intron 45.0%
ATTCCTGGAAATCACACTCC+TGG - chr4_2:24020085-24020104 None:intergenic 45.0%
CTAACATAAGCCCATGTTCC+TGG - chr4_2:24020508-24020527 None:intergenic 45.0%
ACATGGGCTTATGTTAGTGC+TGG + chr4_2:24020511-24020530 Msa0595160:CDS 45.0%
! GGTGCGAGATCAGAATGTTT+TGG + chr4_2:24020932-24020951 Msa0595160:intron 45.0%
GCAATTGTCACCTTACAAGC+CGG + chr4_2:24021088-24021107 Msa0595160:intron 45.0%
!! CTCAACAAAACCGGCTTGTA+AGG - chr4_2:24021101-24021120 None:intergenic 45.0%
!!! CGGTTTTGTTGAGACGAGTT+AGG + chr4_2:24021108-24021127 Msa0595160:intron 45.0%
GCAGTTGTCACCTTACAAAC+TGG + chr4_2:24021285-24021304 Msa0595160:intron 45.0%
GGTTTCTTACGTCCTGTCTA+TGG + chr4_2:24021368-24021387 Msa0595160:intron 45.0%
GAATGATCCTTCTGCTGTCT+AGG + chr4_2:24021431-24021450 Msa0595160:intron 45.0%
! TTGACCAAGAATGGTTTGGC+AGG + chr4_2:24021495-24021514 Msa0595160:intron 45.0%
GGTATGGAATATGGATAGCC+AGG + chr4_2:24021520-24021539 Msa0595160:intron 45.0%
! AAGCTTAGGCATAAAGCACC+TGG - chr4_2:24021541-24021560 None:intergenic 45.0%
TATGCCTAAGCTTCTTTGGC+TGG + chr4_2:24021548-24021567 Msa0595160:intron 45.0%
! CTTTGGCTGGATTAGACCAA+AGG + chr4_2:24021561-24021580 Msa0595160:intron 45.0%
! TGGATTAGACCAAAGGTCAG+AGG + chr4_2:24021568-24021587 Msa0595160:intron 45.0%
GGATTAGACCAAAGGTCAGA+GGG + chr4_2:24021569-24021588 Msa0595160:intron 45.0%
GATTAGACCAAAGGTCAGAG+GGG + chr4_2:24021570-24021589 Msa0595160:intron 45.0%
GGACAGACCGTTTCTGATAA+TGG + chr4_2:24021672-24021691 Msa0595160:intron 45.0%
GACAGGGCCATTATCAGAAA+CGG - chr4_2:24021682-24021701 None:intergenic 45.0%
CTAACACATCTTCCTGGACA+GGG - chr4_2:24021698-24021717 None:intergenic 45.0%
ACTAACACATCTTCCTGGAC+AGG - chr4_2:24021699-24021718 None:intergenic 45.0%
GCATTCCTATAGAGTCGTTC+AGG + chr4_2:24021802-24021821 Msa0595160:intron 45.0%
CAGGGCTACACTCTTAAAGA+TGG + chr4_2:24021821-24021840 Msa0595160:intron 45.0%
GCTACACTCTTAAAGATGGC+TGG + chr4_2:24021825-24021844 Msa0595160:intron 45.0%
CTCATAGCAGCCACAGAATT+GGG + chr4_2:24021917-24021936 Msa0595160:intron 45.0%
GGGTCCATTAAGCTGAGTAT+TGG + chr4_2:24021946-24021965 Msa0595160:intron 45.0%
AGAAATCAGGTCAGGTTTGG+TGG - chr4_2:24022034-24022053 None:intergenic 45.0%
ACTTAATTCATGCGCCACAG+CGG - chr4_2:24022077-24022096 None:intergenic 45.0%
TGGTGCTCGAGTTATGGAAT+CGG - chr4_2:24022114-24022133 None:intergenic 45.0%
CCTATGAGGCCTGAATAACA+TGG - chr4_2:24022200-24022219 None:intergenic 45.0%
CCATGTTATTCAGGCCTCAT+AGG + chr4_2:24022197-24022216 Msa0595160:intron 45.0%
TTGGAAAGGGCCATGAAAAG+TGG - chr4_2:24022263-24022282 None:intergenic 45.0%
CTCCAACTCTGGCCAAAATT+TGG - chr4_2:24022282-24022301 None:intergenic 45.0%
!! AATTTTGGCCAGAGTTGGAG+AGG + chr4_2:24022282-24022301 Msa0595160:intron 45.0%
TTGTACTACCTCTCCAACTC+TGG - chr4_2:24022293-24022312 None:intergenic 45.0%
AAATTCTCGAGTCCGTTGGT+AGG - chr4_2:24022322-24022341 None:intergenic 45.0%
GTAGGAAACTACCAAGTGCA+GGG + chr4_2:24022379-24022398 Msa0595160:intron 45.0%
TAGGAAACTACCAAGTGCAG+GGG + chr4_2:24022380-24022399 Msa0595160:intron 45.0%
TTAGGCTCAGCATCAGATTC+AGG - chr4_2:24022435-24022454 None:intergenic 45.0%
!!! ACTTTTCCCAGCACTGGTTT+AGG - chr4_2:24022453-24022472 None:intergenic 45.0%
!! ATGCTTACTTTTCCCAGCAC+TGG - chr4_2:24022459-24022478 None:intergenic 45.0%
GATTGAAAATGTCACACGGG+AGG + chr4_2:24022531-24022550 Msa0595160:intron 45.0%
GTTAGCATCGTGAAGTGGAA+TGG + chr4_2:24022627-24022646 Msa0595160:intron 45.0%
GGCCAGCTAGTGACTAATAT+TGG + chr4_2:24022649-24022668 Msa0595160:intron 45.0%
!! AGTTCTGAGTTGACAAGGGA+GGG + chr4_2:24022727-24022746 Msa0595160:intron 45.0%
CATTGGCAGGAGTTAGTTGT+AGG + chr4_2:24022760-24022779 Msa0595160:intron 45.0%
TTCTTTGATGAAGGAGCCAC+CGG + chr4_2:24022851-24022870 Msa0595160:intron 45.0%
TCTACAGAACTGACACCTCA+TGG - chr4_2:24022947-24022966 None:intergenic 45.0%
CTCTGTCCCTAAAGAACACA+AGG - chr4_2:24022980-24022999 None:intergenic 45.0%
GTTCTTTGAACTGAGCCCAT+CGG + chr4_2:24023158-24023177 Msa0595160:intron 45.0%
CGCCTTTATAGTCCTGACAT+AGG + chr4_2:24023822-24023841 Msa0595160:intron 45.0%
TCCTGACATAGGTTCATACC+TGG + chr4_2:24023833-24023852 Msa0595160:intron 45.0%
CCTGACATAGGTTCATACCT+GGG + chr4_2:24023834-24023853 Msa0595160:intron 45.0%
ATGCATGATTTCGTGACTGC+TGG + chr4_2:24023999-24024018 Msa0595160:intron 45.0%
TGCATGATTTCGTGACTGCT+GGG + chr4_2:24024000-24024019 Msa0595160:intron 45.0%
TGAAAACTCCAGAGGACAAG+GGG - chr4_2:24024041-24024060 None:intergenic 45.0%
CTAGATCCAGTAGAGACTAG+AGG + chr4_2:24024220-24024239 Msa0595160:exon 45.0%
ACACATTTGCGAATGAAGGC+AGG + chr4_2:24024251-24024270 Msa0595160:three_prime_UTR 45.0%
AGATGAGAGAGAGTCAAGGA+AGG + chr4_2:24024327-24024346 Msa0595160:three_prime_UTR 45.0%
TGGAATTCAAGTGCGAGTGT+TGG + chr4_2:24024455-24024474 Msa0595160:intron 45.0%
TGTTGGAATTCAAGTGCGAG+TGG + chr4_2:24024452-24024471 Msa0595160:intron 45.0%
! GTCCCATGTTGGTTAGAAGT+TGG + chr4_2:24024501-24024520 Msa0595160:three_prime_UTR 45.0%
GTGGTGTCTTAATCTCTTGG+TGG + chr4_2:24024589-24024608 Msa0595160:three_prime_UTR 45.0%
TGTGGATGGGTAAGTACAAG+AGG - chr4_2:24024706-24024725 None:intergenic 45.0%
!! AATTTAAATAAATCTATAAA+AGG - chr4_2:24020879-24020898 None:intergenic 5.0%
!! TTTATAGATTTATTTAAATT+AGG + chr4_2:24020879-24020898 Msa0595160:intron 5.0%
!!! AAATTCTTTATTTTAAAATT+GGG - chr4_2:24023073-24023092 None:intergenic 5.0%
!!! TAAATTCTTTATTTTAAAAT+TGG - chr4_2:24023074-24023093 None:intergenic 5.0%
!! AAAATAAAGAATTTAAAAAT+TGG + chr4_2:24023079-24023098 Msa0595160:intron 5.0%
!! GGATGAAGGTGCTGCTTTGA+AGG + chr4_2:24017162-24017181 Msa0595160:CDS 50.0%
!!! TTGAAGGGTACCCTTTTGGC+TGG + chr4_2:24017178-24017197 Msa0595160:CDS 50.0%
CCAGCAAAACACCAGCCAAA+AGG - chr4_2:24017192-24017211 None:intergenic 50.0%
!! CCTTTTGGCTGGTGTTTTGC+TGG + chr4_2:24017189-24017208 Msa0595160:CDS 50.0%
! TTGGCTGGTGTTTTGCTGGT+TGG + chr4_2:24017193-24017212 Msa0595160:CDS 50.0%
AAGCTCTCCCTAACACTACG+AGG + chr4_2:24017816-24017835 Msa0595160:intron 50.0%
CGAAACAGCCTCGTAGTGTT+AGG - chr4_2:24017827-24017846 None:intergenic 50.0%
!! TGCAGCCTTATTCACGGGTT+TGG + chr4_2:24018142-24018161 Msa0595160:intron 50.0%
GTAGGTCCCACCACTTTATG+TGG + chr4_2:24018542-24018561 Msa0595160:intron 50.0%
GGCAGGAATTGCAAGGATCT+GGG - chr4_2:24019004-24019023 None:intergenic 50.0%
TGGCAGGAATTGCAAGGATC+TGG - chr4_2:24019005-24019024 None:intergenic 50.0%
AGGGAATGGCAGGAATTGCA+AGG - chr4_2:24019011-24019030 None:intergenic 50.0%
GACATGGTTAAGGGAATGGC+AGG - chr4_2:24019021-24019040 None:intergenic 50.0%
GGCTGACATGGTTAAGGGAA+TGG - chr4_2:24019025-24019044 None:intergenic 50.0%
AGTCCGGCTGACATGGTTAA+GGG - chr4_2:24019030-24019049 None:intergenic 50.0%
AAGTCCGGCTGACATGGTTA+AGG - chr4_2:24019031-24019050 None:intergenic 50.0%
CAAAGGGCTCAAACGAAGCA+GGG - chr4_2:24019884-24019903 None:intergenic 50.0%
! TCTCCAGGAGTGTGATTTCC+AGG + chr4_2:24020079-24020098 Msa0595160:intron 50.0%
GGATGACATCACCCATAGAC+AGG - chr4_2:24021383-24021402 None:intergenic 50.0%
TATGGGTGATGTCATCCCTC+TGG + chr4_2:24021386-24021405 Msa0595160:intron 50.0%
!! TGATGTCATCCCTCTGGAGT+AGG + chr4_2:24021392-24021411 Msa0595160:intron 50.0%
! CCAAGAATGGTTTGGCAGGT+CGG + chr4_2:24021499-24021518 Msa0595160:intron 50.0%
! AATGGTTTGGCAGGTCGGTA+TGG + chr4_2:24021504-24021523 Msa0595160:intron 50.0%
TGGCAGGTCGGTATGGAATA+TGG + chr4_2:24021511-24021530 Msa0595160:intron 50.0%
!! TTCTGATAATGGCCCTGTCC+AGG + chr4_2:24021683-24021702 Msa0595160:intron 50.0%
GTAGCCCTGAACGACTCTAT+AGG - chr4_2:24021810-24021829 None:intergenic 50.0%
CCAATTCTGTGGCTGCTATG+AGG - chr4_2:24021919-24021938 None:intergenic 50.0%
CCTCATAGCAGCCACAGAAT+TGG + chr4_2:24021916-24021935 Msa0595160:intron 50.0%
AGCCACAGAATTGGGCTCAT+CGG + chr4_2:24021925-24021944 Msa0595160:intron 50.0%
TGAAACCAAAGTCACCGCTG+TGG + chr4_2:24022060-24022079 Msa0595160:intron 50.0%
GAGTCAGGGGCCTAGTTAAT+TGG - chr4_2:24022134-24022153 None:intergenic 50.0%
GCAACAGACAGTTGCCTATG+AGG - chr4_2:24022214-24022233 None:intergenic 50.0%
GGCAACTGTCTGTTGCAATG+AGG + chr4_2:24022218-24022237 Msa0595160:intron 50.0%
GGGTAAATTCTCGAGTCCGT+TGG - chr4_2:24022326-24022345 None:intergenic 50.0%
CGTAGGAAACTACCAAGTGC+AGG + chr4_2:24022378-24022397 Msa0595160:intron 50.0%
AGGAAACTACCAAGTGCAGG+GGG + chr4_2:24022381-24022400 Msa0595160:intron 50.0%
TGTCCTCAAGGCTGAACTCA+GGG - chr4_2:24022582-24022601 None:intergenic 50.0%
TTGTCCTCAAGGCTGAACTC+AGG - chr4_2:24022583-24022602 None:intergenic 50.0%
!! GAGTTCTGAGTTGACAAGGG+AGG + chr4_2:24022726-24022745 Msa0595160:intron 50.0%
TGAGCCCATCGGATAACACT+TGG + chr4_2:24023169-24023188 Msa0595160:intron 50.0%
AACAATCAGCTGCTGACGCT+TGG + chr4_2:24023355-24023374 Msa0595160:CDS 50.0%
ACAATCAGCTGCTGACGCTT+GGG + chr4_2:24023356-24023375 Msa0595160:CDS 50.0%
CCCAGGTATGAACCTATGTC+AGG - chr4_2:24023837-24023856 None:intergenic 50.0%
CATAGGTTCATACCTGGGCA+AGG + chr4_2:24023839-24023858 Msa0595160:intron 50.0%
GAGCATGATTGCGTGAATGC+AGG - chr4_2:24023897-24023916 None:intergenic 50.0%
CAGTTGCCTCTAGTCTCTAC+TGG - chr4_2:24024229-24024248 None:intergenic 50.0%
AGGCAGGTCTATGATCGGAT+TGG + chr4_2:24024267-24024286 Msa0595160:three_prime_UTR 50.0%
GGCAGGTCTATGATCGGATT+GGG + chr4_2:24024268-24024287 Msa0595160:three_prime_UTR 50.0%
GCAGGTCTATGATCGGATTG+GGG + chr4_2:24024269-24024288 Msa0595160:three_prime_UTR 50.0%
TGAGAGAGAGTCAAGGAAGG+TGG + chr4_2:24024330-24024349 Msa0595160:three_prime_UTR 50.0%
TGGAATTCAAGTGCGAGTGG+TGG + chr4_2:24024475-24024494 Msa0595160:intron 50.0%
! AGTGGTGGTTAGTCCCATGT+TGG + chr4_2:24024490-24024509 Msa0595160:three_prime_UTR 50.0%
CACATGTCAGACACGGACGA+TGG + chr4_2:24017518-24017537 Msa0595160:intron 55.0%
GCAAAGGGCTCAAACGAAGC+AGG - chr4_2:24019885-24019904 None:intergenic 55.0%
AGTTGGTTGGGGATGCTTCC+AGG + chr4_2:24020487-24020506 Msa0595160:intron 55.0%
TGGGGATGCTTCCAGGAACA+TGG + chr4_2:24020494-24020513 Msa0595160:CDS 55.0%
GGGGATGCTTCCAGGAACAT+GGG + chr4_2:24020495-24020514 Msa0595160:CDS 55.0%
CAAGATCCATTGGACCACCC+CGG + chr4_2:24021167-24021186 Msa0595160:intron 55.0%
! TCTGCCATCTGGAGTGTGAC+CGG - chr4_2:24021189-24021208 None:intergenic 55.0%
CGTCACTGTCCTACTCCAGA+GGG - chr4_2:24021404-24021423 None:intergenic 55.0%
ACGTCACTGTCCTACTCCAG+AGG - chr4_2:24021405-24021424 None:intergenic 55.0%
CCGACCTGCCAAACCATTCT+TGG - chr4_2:24021502-24021521 None:intergenic 55.0%
CACAACGTGCTCTTGCACAC+TGG + chr4_2:24021651-24021670 Msa0595160:intron 55.0%
GCCACAGAATTGGGCTCATC+GGG + chr4_2:24021926-24021945 Msa0595160:intron 55.0%
ACCCGATGAGCCCAATTCTG+TGG - chr4_2:24021930-24021949 None:intergenic 55.0%
TGCTGAGCCTAAACCAGTGC+TGG + chr4_2:24022443-24022462 Msa0595160:intron 55.0%
GCTGAGCCTAAACCAGTGCT+GGG + chr4_2:24022444-24022463 Msa0595160:intron 55.0%
CTGAACTCAGGGAACTGGCT+AGG - chr4_2:24022571-24022590 None:intergenic 55.0%
CAAGGCTGAACTCAGGGAAC+TGG - chr4_2:24022576-24022595 None:intergenic 55.0%
GTTCCCTGAGTTCAGCCTTG+AGG + chr4_2:24022576-24022595 Msa0595160:intron 55.0%
GGGAGGGAGAGAAGTGACAT+TGG + chr4_2:24022743-24022762 Msa0595160:intron 55.0%
GGGAGAGAAGTGACATTGGC+AGG + chr4_2:24022747-24022766 Msa0595160:intron 55.0%
AGTTTATCAGCCCAAGCCGG+TGG - chr4_2:24022870-24022889 None:intergenic 55.0%
! TGGCAGCAGCTTTGTCCATG+AGG + chr4_2:24022929-24022948 Msa0595160:intron 55.0%
GCCAAGTTTCCCCTTGCAGT+CGG + chr4_2:24023861-24023880 Msa0595160:intron 55.0%
TCCGACTGCAAGGGGAAACT+TGG - chr4_2:24023865-24023884 None:intergenic 55.0%
TCACACAACCCCTTGTCCTC+TGG + chr4_2:24024030-24024049 Msa0595160:intron 55.0%
CGGGGTGGTCCAATGGATCT+TGG - chr4_2:24021169-24021188 None:intergenic 60.0%
! TGCCATCTGGAGTGTGACCG+GGG - chr4_2:24021187-24021206 None:intergenic 60.0%
! CTGCCATCTGGAGTGTGACC+GGG - chr4_2:24021188-24021207 None:intergenic 60.0%
CACACTCCAGATGGCAGACC+TGG + chr4_2:24021191-24021210 Msa0595160:intron 60.0%
ACTCCAGATGGCAGACCTGG+TGG + chr4_2:24021194-24021213 Msa0595160:intron 60.0%
! ATGGCAGACCTGGTGGCGAT+GGG + chr4_2:24021201-24021220 Msa0595160:intron 60.0%
AACACACACCCATCGCCACC+AGG - chr4_2:24021212-24021231 None:intergenic 60.0%
! ACCAAAGGTCAGAGGGGCAC+AGG + chr4_2:24021576-24021595 Msa0595160:intron 60.0%
TCCTGTGCCCCTCTGACCTT+TGG - chr4_2:24021580-24021599 None:intergenic 60.0%
ATGCGCCACAGCGGTGACTT+TGG - chr4_2:24022068-24022087 None:intergenic 60.0%
TGGCAAACACCCCCTGCACT+TGG - chr4_2:24022393-24022412 None:intergenic 60.0%
!! AGTGCAGGGGGTGTTTGCCA+TGG + chr4_2:24022393-24022412 Msa0595160:intron 60.0%
!! GTGCAGGGGGTGTTTGCCAT+GGG + chr4_2:24022394-24022413 Msa0595160:intron 60.0%
! TGATGAAGGAGCCACCGGCT+TGG + chr4_2:24022856-24022875 Msa0595160:intron 60.0%
!! GATGAAGGAGCCACCGGCTT+GGG + chr4_2:24022857-24022876 Msa0595160:intron 60.0%
GACGCTTGGGCTTGGACTCT+TGG + chr4_2:24023369-24023388 Msa0595160:CDS 60.0%
GTGTGACCGGGGTGGTCCAA+TGG - chr4_2:24021176-24021195 None:intergenic 65.0%
! CATCTGGAGTGTGACCGGGG+TGG - chr4_2:24021184-24021203 None:intergenic 65.0%
CACCCCGGTCACACTCCAGA+TGG + chr4_2:24021182-24021201 Msa0595160:intron 65.0%
TCGCCACCAGGTCTGCCATC+TGG - chr4_2:24021200-24021219 None:intergenic 65.0%
! GATGGCAGACCTGGTGGCGA+TGG + chr4_2:24021200-24021219 Msa0595160:intron 65.0%
CAGCTGCTGACGCTTGGGCT+TGG + chr4_2:24023361-24023380 Msa0595160:CDS 65.0%
!! GGGGAAACTTGGCCTTGCCC+AGG - chr4_2:24023854-24023873 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 24016881 24024938 24016881 ID=Msa0595160;Name=Msa0595160
chr4_2 mRNA 24016881 24024938 24016881 ID=Msa0595160-mRNA-1;Parent=Msa0595160;Name=Msa0595160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.88|0.8|1|0.55|0.5|10|667|322
chr4_2 exon 24016881 24017065 24016881 ID=Msa0595160-mRNA-1:exon:6446;Parent=Msa0595160-mRNA-1
chr4_2 exon 24017093 24017301 24017093 ID=Msa0595160-mRNA-1:exon:6447;Parent=Msa0595160-mRNA-1
chr4_2 exon 24018758 24018810 24018758 ID=Msa0595160-mRNA-1:exon:6448;Parent=Msa0595160-mRNA-1
chr4_2 exon 24019006 24019098 24019006 ID=Msa0595160-mRNA-1:exon:6449;Parent=Msa0595160-mRNA-1
chr4_2 exon 24019751 24019974 24019751 ID=Msa0595160-mRNA-1:exon:6450;Parent=Msa0595160-mRNA-1
chr4_2 exon 24020489 24020555 24020489 ID=Msa0595160-mRNA-1:exon:6451;Parent=Msa0595160-mRNA-1
chr4_2 exon 24023322 24023432 24023322 ID=Msa0595160-mRNA-1:exon:6452;Parent=Msa0595160-mRNA-1
chr4_2 exon 24024197 24024464 24024197 ID=Msa0595160-mRNA-1:exon:6453;Parent=Msa0595160-mRNA-1
chr4_2 exon 24024485 24024770 24024485 ID=Msa0595160-mRNA-1:exon:6454;Parent=Msa0595160-mRNA-1
chr4_2 exon 24024799 24024938 24024799 ID=Msa0595160-mRNA-1:exon:6455;Parent=Msa0595160-mRNA-1
chr4_2 CDS 24016881 24017065 24016881 ID=Msa0595160-mRNA-1:cds;Parent=Msa0595160-mRNA-1
chr4_2 CDS 24017093 24017301 24017093 ID=Msa0595160-mRNA-1:cds;Parent=Msa0595160-mRNA-1
chr4_2 CDS 24018758 24018810 24018758 ID=Msa0595160-mRNA-1:cds;Parent=Msa0595160-mRNA-1
chr4_2 CDS 24019006 24019098 24019006 ID=Msa0595160-mRNA-1:cds;Parent=Msa0595160-mRNA-1
chr4_2 CDS 24019751 24019974 24019751 ID=Msa0595160-mRNA-1:cds;Parent=Msa0595160-mRNA-1
chr4_2 CDS 24020489 24020555 24020489 ID=Msa0595160-mRNA-1:cds;Parent=Msa0595160-mRNA-1
chr4_2 CDS 24023322 24023432 24023322 ID=Msa0595160-mRNA-1:cds;Parent=Msa0595160-mRNA-1
chr4_2 CDS 24024197 24024223 24024197 ID=Msa0595160-mRNA-1:cds;Parent=Msa0595160-mRNA-1
chr4_2 three_prime_UTR 24024224 24024464 24024224 ID=Msa0595160-mRNA-1:three_prime_utr;Parent=Msa0595160-mRNA-1
chr4_2 three_prime_UTR 24024485 24024770 24024485 ID=Msa0595160-mRNA-1:three_prime_utr;Parent=Msa0595160-mRNA-1
chr4_2 three_prime_UTR 24024799 24024938 24024799 ID=Msa0595160-mRNA-1:three_prime_utr;Parent=Msa0595160-mRNA-1
Gene Sequence

>Msa0595160

ATGCGCACTCTTTCATTTCCACCACCATGTCTATCATCTTCTTCATATTCTCTTCACACCAATAATAATAATCGATTATCCACTACTTTTTCTTCTTACAAATGTTTTCATTTCTTAACACCACATTCTTCACTCAAACAAACCAAAAAACAACCTAGTAGAATCAATAACACTGACCCATCTCGTGAAAATGATAATGATGATGATGATAAGAAGAAGAAAAAAAGAGGTGAATCTGAGAAAGAAGAGGAAGAGGATGAAGGTGCTGCTTTGAAGGGTACCCTTTTGGCTGGTGTTTTGCTGGTTGGTTTTGTTGGTGGTTTTGCTTCTGTTGGGTATATTTATAGAGAGCCTATTAATACTTTCTTGAATCAATTCTCTGGCTTCATTGAAGGTTATGGTTCAGCCGGATATGCGTTGTTTGTAGCTGTTTATGCTGGATTGGAGATCCTTGCAATTCCTGCCATTCCCTTAACCATGTCAGCCGGACTTCTTTTTGGATCCCTTACCGGCACTATCATAGTCTCTATCAGTGGAACAGTGGCGGCTAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGTATTCTAAAATTAGTGGAAGGGAATAAGAAGTTTCTCGCTATTGACAGAGCAATTGGAGAAAATGGCTTCAAGGTTGTTACCCTGCTTCGTTTGAGCCCTTTGCTGCCATTTTCTTTGGGGAATTATTTATATGGGTTGACATCTGTTAAGTTTCTTCCGTATGTATTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGTTAGTGCTGGTGCTTTTGGAAGAGCAATAATACAAGAAGAATCTGAACTTAGTTCACTTGGAGGAAACAATCAGCTGCTGACGCTTGGGCTTGGACTCTTGGCCACTGCATTAGCTGCTACATATGTCACGAAGCTTGCAAAGGACGCTGTTAAAGACATCGACGACTAG
Protein sequence

>Msa0595160

MRTLSFPPPCLSSSSYSLHTNNNNRLSTTFSSYKCFHFLTPHSSLKQTKKQPSRINNTDPSRENDNDDDDKKKKKRGESEKEEEEDEGAALKGTLLAGVLLVGFVGGFASVGYIYREPINTFLNQFSGFIEGYGSAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSLTGTIIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDRAIGENGFKVVTLLRLSPLLPFSLGNYLYGLTSVKFLPYVLGSWLGMLPGTWAYVSAGAFGRAIIQEESELSSLGGNNQLLTLGLGLLATALAATYVTKLAKDAVKDIDD*