AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0321230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321230 MtrunA17_Chr2g0298061 96.694 242 8 0 1 242 1 242 9.16e-173 475
Msa0321230 MtrunA17_Chr2g0277211 71.951 164 46 0 78 241 60 223 2.59e-78 235
Msa0321230 MtrunA17_Chr2g0277211 40.659 91 49 2 153 239 54 143 3.13e-11 61.2
Msa0321230 MtrunA17_Chr7g0270231 33.772 228 128 7 6 230 1 208 6.02e-26 100
Msa0321230 MtrunA17_Chr8g0352991 44.318 88 49 0 70 157 48 135 7.15e-18 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321230 AT4G25910.1 70.732 205 57 2 39 242 34 236 2.11e-95 279
Msa0321230 AT5G49940.1 70.787 178 48 1 64 241 62 235 2.36e-81 243
Msa0321230 AT5G49940.2 65.812 117 36 1 64 180 62 174 3.90e-44 147
Msa0321230 AT5G49940.2 48.611 72 32 2 172 239 85 155 7.24e-12 62.8
Msa0321230 AT4G01940.1 36.548 197 115 6 35 230 36 223 8.05e-26 101

Find 51 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAACCTGCTTTGTTTCT+TGG 0.155090 2_4:-22427677 None:intergenic
TGTTCAACCTCCAAGATTTC+TGG 0.161640 2_4:-22428368 None:intergenic
GAAATTAGACCATATCTTAT+TGG 0.195631 2_4:+22428800 Msa0321230:CDS
TCATTCTTATGATAGCTTTC+TGG 0.208001 2_4:+22427180 Msa0321230:five_prime_UTR
AGAGAATGTAGAGAAAGTTT+TGG 0.294107 2_4:+22428184 Msa0321230:CDS
TTCTGCATTAGCCTTCTAAA+TGG 0.296874 2_4:+22429139 Msa0321230:three_prime_UTR
AGACCATATCTTATTGGAAC+TGG 0.334639 2_4:+22428806 Msa0321230:CDS
CCAACCTGATTCCATTTAGA+AGG 0.345253 2_4:-22429150 None:intergenic
ATGAAGTATTCAACAGTCAT+TGG 0.369540 2_4:+22429108 Msa0321230:three_prime_UTR
CGATAAGATTCCAGAAATCT+TGG 0.378676 2_4:+22428358 Msa0321230:CDS
ATGATTACATTGTTAAAGTT+CGG 0.389938 2_4:+22428858 Msa0321230:CDS
CACACGCTCCTTGTAGTTTG+AGG 0.390945 2_4:-22428280 None:intergenic
TTAGCCTTCTAAATGGAATC+AGG 0.393807 2_4:+22429146 Msa0321230:three_prime_UTR
GATTTGAGGCATTGAGTTGT+AGG 0.404948 2_4:-22427255 None:intergenic
TCAGTGTCAGTTACTCTAGT+AGG 0.409608 2_4:+22429081 Msa0321230:three_prime_UTR
CATTATTCACACTCAAATGT+TGG 0.410900 2_4:+22427215 Msa0321230:exon
CGGCTAAGTGGACCGGCAGC+AGG 0.440486 2_4:+22428878 Msa0321230:CDS
AGCTGCACAGCAGCAATAGA+AGG 0.442231 2_4:-22428950 None:intergenic
ATTATTCACACTCAAATGTT+GGG 0.455480 2_4:+22427216 Msa0321230:exon
TGAAGTAAGGCCTGGTTTGA+TGG 0.459751 2_4:+22428208 Msa0321230:CDS
CTCAACCATGACATTGAAGA+TGG 0.471530 2_4:+22428316 Msa0321230:CDS
ATTGTTAAAGTTCGGCTAAG+TGG 0.495444 2_4:+22428866 Msa0321230:CDS
TCCTTGAAGAATCTTATAGC+AGG 0.507331 2_4:+22427563 Msa0321230:intron
TACAAGAAAACTAATATGAA+TGG 0.508638 2_4:-22429191 None:intergenic
GACCATATCTTATTGGAACT+GGG 0.523059 2_4:+22428807 Msa0321230:CDS
CATTCTCTTCTGTCAGTGGC+AGG 0.536464 2_4:-22428169 None:intergenic
TCTACATTCTCTTCTGTCAG+TGG 0.539215 2_4:-22428173 None:intergenic
GATCCCCATCTTCAATGTCA+TGG 0.540108 2_4:-22428321 None:intergenic
TAAAGTTCGGCTAAGTGGAC+CGG 0.546274 2_4:+22428871 Msa0321230:CDS
CCTCCATCAGCCATCAAACC+AGG 0.556402 2_4:-22428218 None:intergenic
GTTGTTATCCTCAAACTACA+AGG 0.559144 2_4:+22428272 Msa0321230:CDS
GTGGCATTGCATGAGATAGA+TGG 0.565280 2_4:+22428245 Msa0321230:CDS
TTCAATGTCATGGTTGAGCT+AGG 0.567639 2_4:-22428311 None:intergenic
AGTATTCAACAGTCATTGGA+AGG 0.570929 2_4:+22429112 Msa0321230:three_prime_UTR
TCAACCATGACATTGAAGAT+GGG 0.574515 2_4:+22428317 Msa0321230:CDS
CCTTCTAAATGGAATCAGGT+TGG 0.577398 2_4:+22429150 Msa0321230:three_prime_UTR
CAGATACTAGATACTGAGAC+TGG 0.580123 2_4:+22428389 Msa0321230:CDS
TAAGATTCCAGAAATCTTGG+AGG 0.581548 2_4:+22428361 Msa0321230:CDS
CTGGTTTGATGGCTGATGGA+GGG 0.590897 2_4:+22428219 Msa0321230:CDS
CCTGGTTTGATGGCTGATGG+AGG 0.592266 2_4:+22428218 Msa0321230:CDS
GTCAGTGGCAGGACACATCT+CGG 0.597217 2_4:-22428158 None:intergenic
ACCATATCTTATTGGAACTG+GGG 0.604069 2_4:+22428808 Msa0321230:CDS
CCATATCTTATTGGAACTGG+GGG 0.604476 2_4:+22428809 Msa0321230:CDS
GATGGCTGATGGAGGGAATG+TGG 0.613469 2_4:+22428226 Msa0321230:CDS
AGGCCTGGTTTGATGGCTGA+TGG 0.614038 2_4:+22428215 Msa0321230:CDS
CGTGCTCCAAGAAACAAAGC+AGG 0.615747 2_4:+22427671 Msa0321230:CDS
CAACCATGACATTGAAGATG+GGG 0.616574 2_4:+22428318 Msa0321230:CDS
GTGGACAATAATCTATGAGA+TGG 0.621519 2_4:-22427306 None:intergenic
ACTGTCATAACTCCTGCTGC+CGG 0.622897 2_4:-22428890 None:intergenic
CTCAAACTACAAGGAGCGTG+TGG 0.626569 2_4:+22428281 Msa0321230:CDS
ATTCACACTCAAATGTTGGG+TGG 0.668261 2_4:+22427219 Msa0321230:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATATTTTATTTTACAAAA+AGG + chr2_4:22427139-22427158 Msa0321230:five_prime_UTR 10.0%
!!! CAATATTTTATTTTACAAAA+AGG + chr2_4:22427139-22427158 Msa0321230:five_prime_UTR 10.0%
!!! ATTAATATTAAGCAAGTTTT+CGG + chr2_4:22427635-22427654 Msa0321230:CDS 15.0%
!!! GTTAAATTTTAATCAATTCT+TGG + chr2_4:22427740-22427759 Msa0321230:intron 15.0%
!! AAAATCATGAATTCATATTA+AGG - chr2_4:22427858-22427877 None:intergenic 15.0%
!!! ATAAAATTATTCATTTTTCC+AGG + chr2_4:22428769-22428788 Msa0321230:intron 15.0%
!!! ATTAATATTAAGCAAGTTTT+CGG + chr2_4:22427635-22427654 Msa0321230:CDS 15.0%
!!! GTTAAATTTTAATCAATTCT+TGG + chr2_4:22427740-22427759 Msa0321230:intron 15.0%
!! AAAATCATGAATTCATATTA+AGG - chr2_4:22427858-22427877 None:intergenic 15.0%
!!! ATAAAATTATTCATTTTTCC+AGG + chr2_4:22428769-22428788 Msa0321230:intron 15.0%
!! AAAAAAAACAAGAAACATGA+AGG - chr2_4:22427365-22427384 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+CGG - chr2_4:22427474-22427493 None:intergenic 20.0%
!!! TTAATATTAAGCAAGTTTTC+GGG + chr2_4:22427636-22427655 Msa0321230:CDS 20.0%
!!! AATCAATTCTTGGATTTTAT+TGG + chr2_4:22427750-22427769 Msa0321230:intron 20.0%
!! GTGATATACAAATGAAATTA+TGG - chr2_4:22428484-22428503 None:intergenic 20.0%
!! ATGATTACATTGTTAAAGTT+CGG + chr2_4:22428858-22428877 Msa0321230:CDS 20.0%
!! TACAAGAAAACTAATATGAA+TGG - chr2_4:22429194-22429213 None:intergenic 20.0%
!! AAAAAAAACAAGAAACATGA+AGG - chr2_4:22427365-22427384 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+CGG - chr2_4:22427474-22427493 None:intergenic 20.0%
!!! TTAATATTAAGCAAGTTTTC+GGG + chr2_4:22427636-22427655 Msa0321230:CDS 20.0%
!!! AATCAATTCTTGGATTTTAT+TGG + chr2_4:22427750-22427769 Msa0321230:intron 20.0%
!! GTGATATACAAATGAAATTA+TGG - chr2_4:22428484-22428503 None:intergenic 20.0%
!! ATGATTACATTGTTAAAGTT+CGG + chr2_4:22428858-22428877 Msa0321230:CDS 20.0%
!! TACAAGAAAACTAATATGAA+TGG - chr2_4:22429194-22429213 None:intergenic 20.0%
!!! GTGTCAATTGTTTTAGTTTT+TGG - chr2_4:22427120-22427139 None:intergenic 25.0%
! ATTATTCACACTCAAATGTT+GGG + chr2_4:22427216-22427235 Msa0321230:exon 25.0%
!!! TTGTTGTTTTTGTTGATTTG+AGG - chr2_4:22427272-22427291 None:intergenic 25.0%
! AATTATGTCTGAGTTTCATA+AGG + chr2_4:22427492-22427511 Msa0321230:intron 25.0%
! AATTTCTCTACAAACATGTA+AGG - chr2_4:22428653-22428672 None:intergenic 25.0%
! GAAATTAGACCATATCTTAT+TGG + chr2_4:22428800-22428819 Msa0321230:CDS 25.0%
!!! GTGTCAATTGTTTTAGTTTT+TGG - chr2_4:22427120-22427139 None:intergenic 25.0%
! ATTATTCACACTCAAATGTT+GGG + chr2_4:22427216-22427235 Msa0321230:exon 25.0%
!!! TTGTTGTTTTTGTTGATTTG+AGG - chr2_4:22427272-22427291 None:intergenic 25.0%
! AATTATGTCTGAGTTTCATA+AGG + chr2_4:22427492-22427511 Msa0321230:intron 25.0%
! AATTTCTCTACAAACATGTA+AGG - chr2_4:22428653-22428672 None:intergenic 25.0%
! GAAATTAGACCATATCTTAT+TGG + chr2_4:22428800-22428819 Msa0321230:CDS 25.0%
TCATTCTTATGATAGCTTTC+TGG + chr2_4:22427180-22427199 Msa0321230:five_prime_UTR 30.0%
CATTATTCACACTCAAATGT+TGG + chr2_4:22427215-22427234 Msa0321230:exon 30.0%
CTTAAAGAGACAAAAATGTG+TGG - chr2_4:22427328-22427347 None:intergenic 30.0%
! CACACATTTTTGTCTCTTTA+AGG + chr2_4:22427326-22427345 Msa0321230:CDS 30.0%
!! AAGAAGTATTTGTGCTTCAT+AGG - chr2_4:22427409-22427428 None:intergenic 30.0%
! GTATGTGTGAGTTTTTCTTT+TGG + chr2_4:22427514-22427533 Msa0321230:intron 30.0%
!!! CATTGCAATGTTTTTTTTGC+AGG + chr2_4:22428122-22428141 Msa0321230:intron 30.0%
! AGAGAATGTAGAGAAAGTTT+TGG + chr2_4:22428184-22428203 Msa0321230:CDS 30.0%
!!! AGAAAGTTTTGGATGAAGTA+AGG + chr2_4:22428195-22428214 Msa0321230:CDS 30.0%
! TACACTTTCGACATTTTCTT+CGG - chr2_4:22428426-22428445 None:intergenic 30.0%
! ATGTCGAAAGTGTATGTAAT+TGG + chr2_4:22428432-22428451 Msa0321230:intron 30.0%
AATGCAAGAAATGATGCATA+AGG - chr2_4:22428460-22428479 None:intergenic 30.0%
! CGCTATTCTTGAGATTTTAT+GGG - chr2_4:22428537-22428556 None:intergenic 30.0%
! ACGCTATTCTTGAGATTTTA+TGG - chr2_4:22428538-22428557 None:intergenic 30.0%
ACTAAGTTGTTTATCCAAAC+AGG + chr2_4:22428593-22428612 Msa0321230:intron 30.0%
! ATGAAGTATTCAACAGTCAT+TGG + chr2_4:22429108-22429127 Msa0321230:three_prime_UTR 30.0%
TCATTCTTATGATAGCTTTC+TGG + chr2_4:22427180-22427199 Msa0321230:five_prime_UTR 30.0%
CATTATTCACACTCAAATGT+TGG + chr2_4:22427215-22427234 Msa0321230:exon 30.0%
CTTAAAGAGACAAAAATGTG+TGG - chr2_4:22427328-22427347 None:intergenic 30.0%
! CACACATTTTTGTCTCTTTA+AGG + chr2_4:22427326-22427345 Msa0321230:CDS 30.0%
!! AAGAAGTATTTGTGCTTCAT+AGG - chr2_4:22427409-22427428 None:intergenic 30.0%
! GTATGTGTGAGTTTTTCTTT+TGG + chr2_4:22427514-22427533 Msa0321230:intron 30.0%
!!! CATTGCAATGTTTTTTTTGC+AGG + chr2_4:22428122-22428141 Msa0321230:intron 30.0%
! AGAGAATGTAGAGAAAGTTT+TGG + chr2_4:22428184-22428203 Msa0321230:CDS 30.0%
!!! AGAAAGTTTTGGATGAAGTA+AGG + chr2_4:22428195-22428214 Msa0321230:CDS 30.0%
! TACACTTTCGACATTTTCTT+CGG - chr2_4:22428426-22428445 None:intergenic 30.0%
! ATGTCGAAAGTGTATGTAAT+TGG + chr2_4:22428432-22428451 Msa0321230:intron 30.0%
AATGCAAGAAATGATGCATA+AGG - chr2_4:22428460-22428479 None:intergenic 30.0%
! CGCTATTCTTGAGATTTTAT+GGG - chr2_4:22428537-22428556 None:intergenic 30.0%
! ACGCTATTCTTGAGATTTTA+TGG - chr2_4:22428538-22428557 None:intergenic 30.0%
ACTAAGTTGTTTATCCAAAC+AGG + chr2_4:22428593-22428612 Msa0321230:intron 30.0%
! ATGAAGTATTCAACAGTCAT+TGG + chr2_4:22429108-22429127 Msa0321230:three_prime_UTR 30.0%
GTGGACAATAATCTATGAGA+TGG - chr2_4:22427309-22427328 None:intergenic 35.0%
TTCTTGAATTAAGCGTGTCT+TGG + chr2_4:22427424-22427443 Msa0321230:intron 35.0%
TCCTTGAAGAATCTTATAGC+AGG + chr2_4:22427563-22427582 Msa0321230:intron 35.0%
ACCTGCTATAAGATTCTTCA+AGG - chr2_4:22427567-22427586 None:intergenic 35.0%
!! AATGAGAGTTGTTTTCTCAG+AGG + chr2_4:22427605-22427624 Msa0321230:CDS 35.0%
! AATGAGTGTTGTGTCTCTAT+TGG - chr2_4:22427904-22427923 None:intergenic 35.0%
! ATCTAATCAAGTAGCTTGCA+AGG + chr2_4:22428068-22428087 Msa0321230:intron 35.0%
! TCTAATCAAGTAGCTTGCAA+GGG + chr2_4:22428069-22428088 Msa0321230:intron 35.0%
GTTGTTATCCTCAAACTACA+AGG + chr2_4:22428272-22428291 Msa0321230:CDS 35.0%
TCAACCATGACATTGAAGAT+GGG + chr2_4:22428317-22428336 Msa0321230:CDS 35.0%
CGATAAGATTCCAGAAATCT+TGG + chr2_4:22428358-22428377 Msa0321230:CDS 35.0%
TAAGATTCCAGAAATCTTGG+AGG + chr2_4:22428361-22428380 Msa0321230:CDS 35.0%
GAAAACAGTTTGACCTGATA+AGG + chr2_4:22428560-22428579 Msa0321230:intron 35.0%
AGTTAAGCACTTACCTTATC+AGG - chr2_4:22428576-22428595 None:intergenic 35.0%
TTGTGAACTTAGATCCTGTT+TGG - chr2_4:22428610-22428629 None:intergenic 35.0%
! GTCTAATTTCTGAAAGAACC+TGG - chr2_4:22428790-22428809 None:intergenic 35.0%
AGACCATATCTTATTGGAAC+TGG + chr2_4:22428806-22428825 Msa0321230:CDS 35.0%
GACCATATCTTATTGGAACT+GGG + chr2_4:22428807-22428826 Msa0321230:CDS 35.0%
ACCATATCTTATTGGAACTG+GGG + chr2_4:22428808-22428827 Msa0321230:CDS 35.0%
ATTGTTAAAGTTCGGCTAAG+TGG + chr2_4:22428866-22428885 Msa0321230:CDS 35.0%
AGTATTCAACAGTCATTGGA+AGG + chr2_4:22429112-22429131 Msa0321230:three_prime_UTR 35.0%
!! TTCTGCATTAGCCTTCTAAA+TGG + chr2_4:22429139-22429158 Msa0321230:three_prime_UTR 35.0%
! TTAGCCTTCTAAATGGAATC+AGG + chr2_4:22429146-22429165 Msa0321230:three_prime_UTR 35.0%
GTGGACAATAATCTATGAGA+TGG - chr2_4:22427309-22427328 None:intergenic 35.0%
TTCTTGAATTAAGCGTGTCT+TGG + chr2_4:22427424-22427443 Msa0321230:intron 35.0%
TCCTTGAAGAATCTTATAGC+AGG + chr2_4:22427563-22427582 Msa0321230:intron 35.0%
ACCTGCTATAAGATTCTTCA+AGG - chr2_4:22427567-22427586 None:intergenic 35.0%
!! AATGAGAGTTGTTTTCTCAG+AGG + chr2_4:22427605-22427624 Msa0321230:CDS 35.0%
! AATGAGTGTTGTGTCTCTAT+TGG - chr2_4:22427904-22427923 None:intergenic 35.0%
! ATCTAATCAAGTAGCTTGCA+AGG + chr2_4:22428068-22428087 Msa0321230:intron 35.0%
! TCTAATCAAGTAGCTTGCAA+GGG + chr2_4:22428069-22428088 Msa0321230:intron 35.0%
GTTGTTATCCTCAAACTACA+AGG + chr2_4:22428272-22428291 Msa0321230:CDS 35.0%
TCAACCATGACATTGAAGAT+GGG + chr2_4:22428317-22428336 Msa0321230:CDS 35.0%
CGATAAGATTCCAGAAATCT+TGG + chr2_4:22428358-22428377 Msa0321230:CDS 35.0%
TAAGATTCCAGAAATCTTGG+AGG + chr2_4:22428361-22428380 Msa0321230:CDS 35.0%
GAAAACAGTTTGACCTGATA+AGG + chr2_4:22428560-22428579 Msa0321230:intron 35.0%
AGTTAAGCACTTACCTTATC+AGG - chr2_4:22428576-22428595 None:intergenic 35.0%
TTGTGAACTTAGATCCTGTT+TGG - chr2_4:22428610-22428629 None:intergenic 35.0%
! GTCTAATTTCTGAAAGAACC+TGG - chr2_4:22428790-22428809 None:intergenic 35.0%
AGACCATATCTTATTGGAAC+TGG + chr2_4:22428806-22428825 Msa0321230:CDS 35.0%
GACCATATCTTATTGGAACT+GGG + chr2_4:22428807-22428826 Msa0321230:CDS 35.0%
ACCATATCTTATTGGAACTG+GGG + chr2_4:22428808-22428827 Msa0321230:CDS 35.0%
ATTGTTAAAGTTCGGCTAAG+TGG + chr2_4:22428866-22428885 Msa0321230:CDS 35.0%
AGTATTCAACAGTCATTGGA+AGG + chr2_4:22429112-22429131 Msa0321230:three_prime_UTR 35.0%
!! TTCTGCATTAGCCTTCTAAA+TGG + chr2_4:22429139-22429158 Msa0321230:three_prime_UTR 35.0%
! TTAGCCTTCTAAATGGAATC+AGG + chr2_4:22429146-22429165 Msa0321230:three_prime_UTR 35.0%
ATTCACACTCAAATGTTGGG+TGG + chr2_4:22427219-22427238 Msa0321230:exon 40.0%
!! GATTTGAGGCATTGAGTTGT+AGG - chr2_4:22427258-22427277 None:intergenic 40.0%
GAAACATGAAGGAAGAGAAG+TGG - chr2_4:22427354-22427373 None:intergenic 40.0%
! AATTAAGCGTGTCTTGGTGT+CGG + chr2_4:22427430-22427449 Msa0321230:intron 40.0%
!! GAAGAACCTGCTTTGTTTCT+TGG - chr2_4:22427680-22427699 None:intergenic 40.0%
CACAACACTCATTGACATGT+AGG + chr2_4:22427911-22427930 Msa0321230:intron 40.0%
AACATGTGTCAGTGTCATGT+TGG + chr2_4:22427971-22427990 Msa0321230:intron 40.0%
TCTACATTCTCTTCTGTCAG+TGG - chr2_4:22428176-22428195 None:intergenic 40.0%
TTCAATGTCATGGTTGAGCT+AGG - chr2_4:22428314-22428333 None:intergenic 40.0%
CTCAACCATGACATTGAAGA+TGG + chr2_4:22428316-22428335 Msa0321230:CDS 40.0%
CAACCATGACATTGAAGATG+GGG + chr2_4:22428318-22428337 Msa0321230:CDS 40.0%
TGTTCAACCTCCAAGATTTC+TGG - chr2_4:22428371-22428390 None:intergenic 40.0%
CAGATACTAGATACTGAGAC+TGG + chr2_4:22428389-22428408 Msa0321230:CDS 40.0%
CCATATCTTATTGGAACTGG+GGG + chr2_4:22428809-22428828 Msa0321230:CDS 40.0%
TCAGTGTCAGTTACTCTAGT+AGG + chr2_4:22429081-22429100 Msa0321230:three_prime_UTR 40.0%
CCAACCTGATTCCATTTAGA+AGG - chr2_4:22429153-22429172 None:intergenic 40.0%
CCTTCTAAATGGAATCAGGT+TGG + chr2_4:22429150-22429169 Msa0321230:three_prime_UTR 40.0%
ATTCACACTCAAATGTTGGG+TGG + chr2_4:22427219-22427238 Msa0321230:exon 40.0%
!! GATTTGAGGCATTGAGTTGT+AGG - chr2_4:22427258-22427277 None:intergenic 40.0%
GAAACATGAAGGAAGAGAAG+TGG - chr2_4:22427354-22427373 None:intergenic 40.0%
! AATTAAGCGTGTCTTGGTGT+CGG + chr2_4:22427430-22427449 Msa0321230:intron 40.0%
!! GAAGAACCTGCTTTGTTTCT+TGG - chr2_4:22427680-22427699 None:intergenic 40.0%
CACAACACTCATTGACATGT+AGG + chr2_4:22427911-22427930 Msa0321230:intron 40.0%
AACATGTGTCAGTGTCATGT+TGG + chr2_4:22427971-22427990 Msa0321230:intron 40.0%
TCTACATTCTCTTCTGTCAG+TGG - chr2_4:22428176-22428195 None:intergenic 40.0%
TTCAATGTCATGGTTGAGCT+AGG - chr2_4:22428314-22428333 None:intergenic 40.0%
CTCAACCATGACATTGAAGA+TGG + chr2_4:22428316-22428335 Msa0321230:CDS 40.0%
CAACCATGACATTGAAGATG+GGG + chr2_4:22428318-22428337 Msa0321230:CDS 40.0%
TGTTCAACCTCCAAGATTTC+TGG - chr2_4:22428371-22428390 None:intergenic 40.0%
CAGATACTAGATACTGAGAC+TGG + chr2_4:22428389-22428408 Msa0321230:CDS 40.0%
CCATATCTTATTGGAACTGG+GGG + chr2_4:22428809-22428828 Msa0321230:CDS 40.0%
TCAGTGTCAGTTACTCTAGT+AGG + chr2_4:22429081-22429100 Msa0321230:three_prime_UTR 40.0%
CCAACCTGATTCCATTTAGA+AGG - chr2_4:22429153-22429172 None:intergenic 40.0%
CCTTCTAAATGGAATCAGGT+TGG + chr2_4:22429150-22429169 Msa0321230:three_prime_UTR 40.0%
!! GTCTTGGTGTCGGATATGTA+TGG + chr2_4:22427440-22427459 Msa0321230:intron 45.0%
! GGTGTCGGATATGTATGGTT+TGG + chr2_4:22427445-22427464 Msa0321230:intron 45.0%
! TTGGTGTCTGACATGTGTCA+GGG - chr2_4:22428004-22428023 None:intergenic 45.0%
!! TTTGGTGTCTGACATGTGTC+AGG - chr2_4:22428005-22428024 None:intergenic 45.0%
CCTTAGATTGACGACGTGTT+TGG - chr2_4:22428023-22428042 None:intergenic 45.0%
CCAAACACGTCGTCAATCTA+AGG + chr2_4:22428020-22428039 Msa0321230:intron 45.0%
!! GTTTTGGATGAAGTAAGGCC+TGG + chr2_4:22428200-22428219 Msa0321230:CDS 45.0%
! TGAAGTAAGGCCTGGTTTGA+TGG + chr2_4:22428208-22428227 Msa0321230:CDS 45.0%
GTGGCATTGCATGAGATAGA+TGG + chr2_4:22428245-22428264 Msa0321230:CDS 45.0%
GATCCCCATCTTCAATGTCA+TGG - chr2_4:22428324-22428343 None:intergenic 45.0%
CCCCCAGTTCCAATAAGATA+TGG - chr2_4:22428812-22428831 None:intergenic 45.0%
TATCTTATTGGAACTGGGGG+AGG + chr2_4:22428812-22428831 Msa0321230:CDS 45.0%
TAAAGTTCGGCTAAGTGGAC+CGG + chr2_4:22428871-22428890 Msa0321230:CDS 45.0%
!! GTCTTGGTGTCGGATATGTA+TGG + chr2_4:22427440-22427459 Msa0321230:intron 45.0%
! GGTGTCGGATATGTATGGTT+TGG + chr2_4:22427445-22427464 Msa0321230:intron 45.0%
! TTGGTGTCTGACATGTGTCA+GGG - chr2_4:22428004-22428023 None:intergenic 45.0%
!! TTTGGTGTCTGACATGTGTC+AGG - chr2_4:22428005-22428024 None:intergenic 45.0%
CCTTAGATTGACGACGTGTT+TGG - chr2_4:22428023-22428042 None:intergenic 45.0%
CCAAACACGTCGTCAATCTA+AGG + chr2_4:22428020-22428039 Msa0321230:intron 45.0%
!! GTTTTGGATGAAGTAAGGCC+TGG + chr2_4:22428200-22428219 Msa0321230:CDS 45.0%
! TGAAGTAAGGCCTGGTTTGA+TGG + chr2_4:22428208-22428227 Msa0321230:CDS 45.0%
GTGGCATTGCATGAGATAGA+TGG + chr2_4:22428245-22428264 Msa0321230:CDS 45.0%
GATCCCCATCTTCAATGTCA+TGG - chr2_4:22428324-22428343 None:intergenic 45.0%
CCCCCAGTTCCAATAAGATA+TGG - chr2_4:22428812-22428831 None:intergenic 45.0%
TATCTTATTGGAACTGGGGG+AGG + chr2_4:22428812-22428831 Msa0321230:CDS 45.0%
TAAAGTTCGGCTAAGTGGAC+CGG + chr2_4:22428871-22428890 Msa0321230:CDS 45.0%
CGTGCTCCAAGAAACAAAGC+AGG + chr2_4:22427671-22427690 Msa0321230:CDS 50.0%
CATTCTCTTCTGTCAGTGGC+AGG - chr2_4:22428172-22428191 None:intergenic 50.0%
! CTGGTTTGATGGCTGATGGA+GGG + chr2_4:22428219-22428238 Msa0321230:CDS 50.0%
CACACGCTCCTTGTAGTTTG+AGG - chr2_4:22428283-22428302 None:intergenic 50.0%
! CTCAAACTACAAGGAGCGTG+TGG + chr2_4:22428281-22428300 Msa0321230:CDS 50.0%
ACTGTCATAACTCCTGCTGC+CGG - chr2_4:22428893-22428912 None:intergenic 50.0%
AGCTGCACAGCAGCAATAGA+AGG - chr2_4:22428953-22428972 None:intergenic 50.0%
CGTGCTCCAAGAAACAAAGC+AGG + chr2_4:22427671-22427690 Msa0321230:CDS 50.0%
CATTCTCTTCTGTCAGTGGC+AGG - chr2_4:22428172-22428191 None:intergenic 50.0%
! CTGGTTTGATGGCTGATGGA+GGG + chr2_4:22428219-22428238 Msa0321230:CDS 50.0%
CACACGCTCCTTGTAGTTTG+AGG - chr2_4:22428283-22428302 None:intergenic 50.0%
! CTCAAACTACAAGGAGCGTG+TGG + chr2_4:22428281-22428300 Msa0321230:CDS 50.0%
ACTGTCATAACTCCTGCTGC+CGG - chr2_4:22428893-22428912 None:intergenic 50.0%
AGCTGCACAGCAGCAATAGA+AGG - chr2_4:22428953-22428972 None:intergenic 50.0%
GTCAGTGGCAGGACACATCT+CGG - chr2_4:22428161-22428180 None:intergenic 55.0%
! AGGCCTGGTTTGATGGCTGA+TGG + chr2_4:22428215-22428234 Msa0321230:CDS 55.0%
CCTCCATCAGCCATCAAACC+AGG - chr2_4:22428221-22428240 None:intergenic 55.0%
! CCTGGTTTGATGGCTGATGG+AGG + chr2_4:22428218-22428237 Msa0321230:CDS 55.0%
GATGGCTGATGGAGGGAATG+TGG + chr2_4:22428226-22428245 Msa0321230:CDS 55.0%
GTCAGTGGCAGGACACATCT+CGG - chr2_4:22428161-22428180 None:intergenic 55.0%
! AGGCCTGGTTTGATGGCTGA+TGG + chr2_4:22428215-22428234 Msa0321230:CDS 55.0%
CCTCCATCAGCCATCAAACC+AGG - chr2_4:22428221-22428240 None:intergenic 55.0%
! CCTGGTTTGATGGCTGATGG+AGG + chr2_4:22428218-22428237 Msa0321230:CDS 55.0%
GATGGCTGATGGAGGGAATG+TGG + chr2_4:22428226-22428245 Msa0321230:CDS 55.0%
CGGCTAAGTGGACCGGCAGC+AGG + chr2_4:22428878-22428897 Msa0321230:CDS 70.0%
CGGCTAAGTGGACCGGCAGC+AGG + chr2_4:22428878-22428897 Msa0321230:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 22427086 22429240 22427086 ID=Msa0321230;Name=Msa0321230
chr2_4 mRNA 22427086 22429240 22427086 ID=Msa0321230-mRNA-1;Parent=Msa0321230;Name=Msa0321230-mRNA-1;_AED=0.12;_eAED=0.12;_QI=145|1|1|1|1|1|4|258|242
chr2_4 exon 22427086 22427347 22427086 ID=Msa0321230-mRNA-1:exon:8245;Parent=Msa0321230-mRNA-1
chr2_4 exon 22427572 22427692 22427572 ID=Msa0321230-mRNA-1:exon:8246;Parent=Msa0321230-mRNA-1
chr2_4 exon 22428144 22428442 22428144 ID=Msa0321230-mRNA-1:exon:8247;Parent=Msa0321230-mRNA-1
chr2_4 exon 22428791 22429240 22428791 ID=Msa0321230-mRNA-1:exon:8248;Parent=Msa0321230-mRNA-1
chr2_4 five_prime_UTR 22427086 22427230 22427086 ID=Msa0321230-mRNA-1:five_prime_utr;Parent=Msa0321230-mRNA-1
chr2_4 CDS 22427231 22427347 22427231 ID=Msa0321230-mRNA-1:cds;Parent=Msa0321230-mRNA-1
chr2_4 CDS 22427572 22427692 22427572 ID=Msa0321230-mRNA-1:cds;Parent=Msa0321230-mRNA-1
chr2_4 CDS 22428144 22428442 22428144 ID=Msa0321230-mRNA-1:cds;Parent=Msa0321230-mRNA-1
chr2_4 CDS 22428791 22428982 22428791 ID=Msa0321230-mRNA-1:cds;Parent=Msa0321230-mRNA-1
chr2_4 three_prime_UTR 22428983 22429240 22428983 ID=Msa0321230-mRNA-1:three_prime_utr;Parent=Msa0321230-mRNA-1
Gene Sequence

>Msa0321230

ATGTTGGGTGGTGCACTTTCAACTCCTACAACTCAATGCCTCAAATCAACAAAAACAACAATTACAATGCTTTATCCATCTCATAGATTATTGTCCACACATTTTTGTCTCTTTAAGAATCTTATAGCAGGTAATAGAAGATTTTCATCAAATGAGAGTTGTTTTCTCAGAGGTCATCAAATTAATATTAAGCAAGTTTTCGGGCTAATCTCTCGTCGTGCTCCAAGAAACAAAGCAGGACTTTTTGTTTCTCCGAGATGTGTCCTGCCACTGACAGAAGAGAATGTAGAGAAAGTTTTGGATGAAGTAAGGCCTGGTTTGATGGCTGATGGAGGGAATGTGGCATTGCATGAGATAGATGGTCTTGTTGTTATCCTCAAACTACAAGGAGCGTGTGGATCATGTCCTAGCTCAACCATGACATTGAAGATGGGGATCGAAACTCGTCTTCGCGATAAGATTCCAGAAATCTTGGAGGTTGAACAGATACTAGATACTGAGACTGGTCTTGAGCTAACCGAAGAAAATGTCGAAAGTGTTCTTTCAGAAATTAGACCATATCTTATTGGAACTGGGGGAGGAACATTAGAGCTTGTTGAAATTAATGATTACATTGTTAAAGTTCGGCTAAGTGGACCGGCAGCAGGAGTTATGACAGTTCGTGTTGCGTTAACGCAGAAGCTGAGAGACAAGATACCTTCTATTGCTGCTGTGCAGCTAATAGAATGA

Protein sequence

>Msa0321230

MLGGALSTPTTQCLKSTKTTITMLYPSHRLLSTHFCLFKNLIAGNRRFSSNESCFLRGHQINIKQVFGLISRRAPRNKAGLFVSPRCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELTEENVESVLSEIRPYLIGTGGGTLELVEINDYIVKVRLSGPAAGVMTVRVALTQKLRDKIPSIAAVQLIE*