AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0358720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358720 MtrunA17_Chr3g0095421 98.638 367 4 1 1 367 1 366 0.0 737
Msa0358720 MtrunA17_Chr3g0127491 41.284 327 178 7 34 355 34 351 5.83e-79 246
Msa0358720 MtrunA17_Chr7g0221791 33.036 336 182 12 38 357 6 314 1.99e-34 129
Msa0358720 MtrunA17_Chr7g0222171 30.321 343 183 11 38 357 6 315 9.78e-33 125
Msa0358720 MtrunA17_Chr7g0274061 30.723 332 188 11 38 351 13 320 4.54e-31 120
Msa0358720 MtrunA17_Chr7g0274071 30.368 326 189 12 39 351 16 316 1.05e-28 114
Msa0358720 MtrunA17_Chr7g0222121 30.623 369 181 13 38 357 6 348 1.68e-28 114
Msa0358720 MtrunA17_Chr1g0204651 29.358 327 192 11 38 349 7 309 6.81e-28 112
Msa0358720 MtrunA17_Chr7g0274041 28.049 328 195 12 38 349 9 311 4.76e-23 98.6
Msa0358720 MtrunA17_Chr2g0321131 25.737 373 224 16 17 360 33 381 5.10e-22 96.3
Msa0358720 MtrunA17_Chr8g0380261 25.348 359 204 15 45 356 48 389 5.54e-20 90.5
Msa0358720 MtrunA17_Chr1g0169691 29.260 311 189 10 41 337 6 299 1.76e-18 85.5
Msa0358720 MtrunA17_Chr1g0167421 24.090 357 218 10 16 332 41 384 4.96e-18 85.1
Msa0358720 MtrunA17_Chr7g0274081 30.857 175 105 5 187 354 4 169 1.04e-16 77.8
Msa0358720 MtrunA17_Chr4g0018921 25.153 326 173 12 46 352 12 285 2.38e-16 79.0
Msa0358720 MtrunA17_Chr1g0173621 25.249 301 168 10 84 363 45 309 1.65e-15 76.6
Msa0358720 MtrunA17_Chr7g0239701 26.106 226 124 8 145 355 94 291 1.81e-13 70.5
Msa0358720 MtrunA17_Chr5g0447941 26.748 329 157 13 43 345 15 285 2.07e-13 70.5
Msa0358720 MtrunA17_Chr5g0447951 26.748 329 157 13 43 345 15 285 2.19e-13 70.1
Msa0358720 MtrunA17_Chr5g0447961 26.748 329 157 13 43 345 15 285 2.19e-13 70.1
Msa0358720 MtrunA17_Chr3g0121001 25.478 314 159 11 78 360 39 308 3.68e-13 69.7
Msa0358720 MtrunA17_Chr7g0221771 41.975 81 46 1 278 357 8 88 8.14e-12 61.6
Msa0358720 MtrunA17_Chr6g0479981 26.460 291 161 12 80 353 38 292 1.03e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358720 AT1G06690.1 75.287 348 85 1 21 367 30 377 0.0 553
Msa0358720 AT5G53580.1 42.073 328 164 8 37 353 38 350 8.21e-76 239
Msa0358720 AT1G60750.1 31.692 325 178 10 38 353 10 299 2.03e-30 119
Msa0358720 AT1G60710.1 30.178 338 182 12 38 353 9 314 1.58e-28 114
Msa0358720 AT1G60730.1 29.970 337 184 11 38 353 9 314 2.73e-28 113
Msa0358720 AT1G60680.1 30.091 329 195 9 38 353 9 315 1.29e-27 111
Msa0358720 AT1G10810.1 30.699 329 190 11 38 352 9 313 3.00e-27 110
Msa0358720 AT1G60730.3 28.571 357 183 12 38 353 9 334 5.59e-27 110
Msa0358720 AT1G60690.1 30.267 337 183 12 38 353 9 314 9.02e-27 109
Msa0358720 AT2G27680.1 25.600 375 220 17 18 360 24 371 1.07e-22 98.6
Msa0358720 AT1G10810.3 33.054 239 138 8 128 352 31 261 1.05e-19 88.6
Msa0358720 AT1G04690.1 28.431 306 188 11 41 332 6 294 2.54e-19 88.2
Msa0358720 AT1G04420.1 24.294 354 213 11 19 332 41 379 1.71e-17 83.6
Msa0358720 AT1G60680.2 30.043 233 133 7 38 262 9 219 3.04e-17 80.9
Msa0358720 AT1G10810.2 30.435 230 131 7 38 260 9 216 7.95e-17 79.7
Msa0358720 AT2G21260.1 23.653 334 180 12 44 352 7 290 3.87e-14 72.8
Msa0358720 AT2G37760.5 25.000 284 154 11 80 344 30 273 5.10e-13 69.3
Msa0358720 AT2G37760.4 25.000 284 154 11 80 344 30 273 5.14e-13 69.3
Msa0358720 AT2G37760.3 25.000 284 154 11 80 344 30 273 5.14e-13 69.3
Msa0358720 AT2G37760.2 25.352 284 153 11 80 344 30 273 6.81e-13 69.3
Msa0358720 AT2G37760.1 25.352 284 153 11 80 344 30 273 6.81e-13 69.3
Msa0358720 AT2G21260.2 24.473 237 131 8 140 352 10 222 1.98e-12 67.0
Msa0358720 AT5G62420.1 25.333 300 166 13 72 352 26 286 1.98e-12 67.8

Find 105 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGACACAGCCGAAGTTTA+TGG 0.136762 3_1:-44234575 Msa0358720:CDS
TGTACCTTTGTTAGGAATTC+TGG 0.171436 3_1:+44232161 None:intergenic
TATAACTTTACAAATGATTT+AGG 0.209980 3_1:+44231086 None:intergenic
TCGAAAATTAAGCCTGTTAT+TGG 0.217835 3_1:-44231174 Msa0358720:CDS
AGTTGAAGATAAGTTGAAAT+TGG 0.220838 3_1:-44235230 Msa0358720:CDS
TAAACTACAGCCTCATTTAT+AGG 0.233447 3_1:-44233285 Msa0358720:CDS
TAGAAGAGTTTCTGAATTTA+CGG 0.235858 3_1:+44234451 None:intergenic
TCTTAAGCAGGTGTTCTTAC+TGG 0.244612 3_1:-44232236 Msa0358720:intron
AGGATTTCACCTTGAGCTAT+TGG 0.277879 3_1:+44233196 None:intergenic
AGAAAAGTTGTACCTTTGTT+AGG 0.288849 3_1:+44232153 None:intergenic
AGACAAAACTTCATTGAATT+AGG 0.294599 3_1:-44230766 Msa0358720:three_prime_UTR
TGGAATTGGAGCTTGGTCTT+GGG 0.303830 3_1:-44235179 Msa0358720:CDS
CTGAAGAAGATCACTGAAAT+AGG 0.304108 3_1:-44232051 Msa0358720:CDS
AAATTGCATTCATAGTAAAT+TGG 0.305786 3_1:-44231043 Msa0358720:three_prime_UTR
TGACCCATCGACACTGAAAT+TGG 0.329657 3_1:+44230900 None:intergenic
TCAACTGGAAAGCCAATAAC+AGG 0.332654 3_1:+44231162 None:intergenic
GAACAAGCTGAAGAATTTAA+AGG 0.335134 3_1:-44231252 Msa0358720:CDS
GTAAATTCAGAAACTCTTCT+AGG 0.336089 3_1:-44234449 Msa0358720:CDS
GGTAGCTGAGCTACGAAGTT+TGG 0.341379 3_1:-44231199 Msa0358720:CDS
TTTGTTAGGTATCACTAAAC+TGG 0.342680 3_1:-44231323 Msa0358720:intron
TTGGAATTGGAGCTTGGTCT+TGG 0.353357 3_1:-44235180 Msa0358720:CDS
GCGACTTCAACTTCAACATT+TGG 0.360987 3_1:+44234309 None:intergenic
TATAGGGTCCCTGAAGAAAA+TGG 0.367229 3_1:-44233268 Msa0358720:CDS
CTTGGGGTGATACTACTTAC+TGG 0.369955 3_1:-44235162 Msa0358720:CDS
AAGGTGTCAACAATTGGAAT+TGG 0.373397 3_1:-44235193 Msa0358720:CDS
CTAGGTGATGCTGTTCAAAA+AGG 0.374039 3_1:-44233924 Msa0358720:CDS
CCATGGCAGTGCAGCAAACT+TGG 0.380250 3_1:+44234284 None:intergenic
GTTGAAGATAAGTTGAAATT+GGG 0.392585 3_1:-44235229 Msa0358720:CDS
GATTTGAAGGTGTCAACAAT+TGG 0.398533 3_1:-44235199 Msa0358720:CDS
ACATAATTATCTTGTGGGTT+AGG 0.400873 3_1:-44230838 Msa0358720:three_prime_UTR
AAACTACATAATTATCTTGT+GGG 0.403962 3_1:-44230843 Msa0358720:three_prime_UTR
AACTTCGGCTGTGTCGATAA+AGG 0.414516 3_1:+44234580 None:intergenic
GGAAATGTTGTACCAATTCC+TGG 0.415471 3_1:-44231288 Msa0358720:CDS
GAAGAATTTAAAGGTGCATT+GGG 0.420507 3_1:-44231243 Msa0358720:CDS
ACTCCACGAAATCCTCCATC+TGG 0.425582 3_1:-44232206 Msa0358720:CDS
TGGATCTGTATCAGCTTCAT+TGG 0.427317 3_1:-44234194 Msa0358720:intron
ACAGCCGAAGTTTATGGCTC+TGG 0.428679 3_1:-44234569 Msa0358720:CDS
TCAGGGTATATTGATGGTCT+AGG 0.431833 3_1:-44233942 Msa0358720:intron
GTTGGTGTTTCAAACTATAG+TGG 0.441212 3_1:-44233888 Msa0358720:intron
TGAAGAATTTAAAGGTGCAT+TGG 0.443008 3_1:-44231244 Msa0358720:CDS
AAACTACAGCCTCATTTATA+GGG 0.445249 3_1:-44233284 Msa0358720:CDS
GCTGCACTGCCATGGAGATT+AGG 0.447010 3_1:-44234276 Msa0358720:CDS
AGTAAAAGCTGTTGCTTCAG+AGG 0.449040 3_1:-44235272 Msa0358720:CDS
GCATTCAATACAAGTATTGA+TGG 0.449691 3_1:-44234611 Msa0358720:CDS
GCGCACTTAGAACACTTTCA+CGG 0.457629 3_1:+44234253 None:intergenic
CTTTGGAATTCGTGGTTGAA+AGG 0.458195 3_1:+44230722 None:intergenic
GGAAGCAACTTTGGAATTCG+TGG 0.464028 3_1:+44230714 None:intergenic
CTTCAGGGACCCTATAAATG+AGG 0.477573 3_1:+44233275 None:intergenic
TTTACTTGATTTGAAGCCAA+TGG 0.478431 3_1:+44233304 None:intergenic
AAGTCATTTCGAGTCGATCA+AGG 0.479301 3_1:+44234220 None:intergenic
CCATTGAGAATGAAAATTGA+TGG 0.480703 3_1:+44235350 None:intergenic
TATTAAAGAACGAAAACAAA+AGG 0.484819 3_1:-44234334 Msa0358720:CDS
CATTCAATACAAGTATTGAT+GGG 0.489245 3_1:-44234610 Msa0358720:CDS
CAGCCGAAGTTTATGGCTCT+GGG 0.491385 3_1:-44234568 Msa0358720:CDS
ATTGGGTGGTTCTGATTTGA+AGG 0.491620 3_1:-44235212 Msa0358720:CDS
ATTACCAATTTCAGTGTCGA+TGG 0.492854 3_1:-44230904 Msa0358720:three_prime_UTR
AATTATCTTGTGGGTTAGGA+AGG 0.499853 3_1:-44230834 Msa0358720:three_prime_UTR
TTTACAAATGATTTAGGAGG+GGG 0.500903 3_1:+44231092 None:intergenic
AAGAAAACCTGTGATGAACT+TGG 0.503115 3_1:-44233241 Msa0358720:CDS
CAACAATTGGAATTGGAGCT+TGG 0.503149 3_1:-44235186 Msa0358720:CDS
TCACTATACATACAAGAATA+CGG 0.506190 3_1:+44230868 None:intergenic
GGCCCAGATGGAGGATTTCG+TGG 0.511209 3_1:+44232203 None:intergenic
CCAAGTTTGCTGCACTGCCA+TGG 0.518411 3_1:-44234284 Msa0358720:CDS
AAAACTACATAATTATCTTG+TGG 0.519984 3_1:-44230844 Msa0358720:three_prime_UTR
GGAATTGGAGCTTGGTCTTG+GGG 0.521019 3_1:-44235178 Msa0358720:CDS
CCTTCATTTCCCCATACTCC+AGG 0.522337 3_1:+44234087 None:intergenic
AATTTAAAGGTGCATTGGGA+TGG 0.525566 3_1:-44231239 Msa0358720:CDS
TCAGTGATCTTCTTCAGCAG+TGG 0.532128 3_1:+44232057 None:intergenic
AACTTTACAAATGATTTAGG+AGG 0.532241 3_1:+44231089 None:intergenic
GAAGATAAGTTGAAATTGGG+TGG 0.540548 3_1:-44235226 Msa0358720:CDS
ACTTTACAAATGATTTAGGA+GGG 0.540756 3_1:+44231090 None:intergenic
TTAGGTATCACTAAACTGGC+TGG 0.543245 3_1:-44231319 Msa0358720:intron
AAAGGACTTGTAAAGGCTGT+TGG 0.543851 3_1:-44233906 Msa0358720:CDS
GTAAAAGCTGTTGCTTCAGA+GGG 0.548941 3_1:-44235271 Msa0358720:CDS
GTACAATAAAACTTCTACAC+AGG 0.549770 3_1:-44232022 Msa0358720:intron
TGTAATCCCAAGTTCATCAC+AGG 0.550263 3_1:+44233234 None:intergenic
CCTGGAGTATGGGGAAATGA+AGG 0.554285 3_1:-44234087 Msa0358720:intron
GAATAAAGTGCTTATCTACA+TGG 0.557281 3_1:-44230978 Msa0358720:three_prime_UTR
TTACCAATTTCAGTGTCGAT+GGG 0.559065 3_1:-44230903 Msa0358720:three_prime_UTR
CTAAACTGGCTGGTAGCTCA+AGG 0.571830 3_1:-44231309 Msa0358720:CDS
CATTGAGAATGAAAATTGAT+GGG 0.572653 3_1:+44235351 None:intergenic
ATATGCAATCTTGTGTAACA+AGG 0.576565 3_1:+44235468 None:intergenic
ATGGAGATTGACTAATGAAG+AGG 0.577740 3_1:-44231220 Msa0358720:CDS
ATTCAGAAACTCTTCTAGGA+AGG 0.586726 3_1:-44234445 Msa0358720:intron
ATTCTACCTCGAGGCCCAGA+TGG 0.592694 3_1:+44232191 None:intergenic
CTTTACAAATGATTTAGGAG+GGG 0.594574 3_1:+44231091 None:intergenic
CACCCCAGAGCCATAAACTT+CGG 0.595883 3_1:+44234565 None:intergenic
AGTCATTTCGAGTCGATCAA+GGG 0.598999 3_1:+44234221 None:intergenic
CAAGAAGAGAGGTATTCCAT+TGG 0.599396 3_1:-44233320 Msa0358720:CDS
CTACCTCGAGGCCCAGATGG+AGG 0.606001 3_1:+44232194 None:intergenic
CTCCACGAAATCCTCCATCT+GGG 0.608199 3_1:-44232205 Msa0358720:CDS
ATTCAATACAAGTATTGATG+GGG 0.611038 3_1:-44234609 Msa0358720:CDS
TACTCCAGAATTCCTAACAA+AGG 0.612031 3_1:-44232165 Msa0358720:intron
AGAAAACCTGTGATGAACTT+GGG 0.616494 3_1:-44233240 Msa0358720:CDS
CTTTCACGGCCTAATCTCCA+TGG 0.619485 3_1:+44234267 None:intergenic
GCATATTCACCAATAGCTCA+AGG 0.621156 3_1:-44233205 Msa0358720:intron
TCGACTCGAAATGACTTCTG+TGG 0.632893 3_1:-44234214 Msa0358720:CDS
TATGCACAGCTCAAGAAGAG+AGG 0.633807 3_1:-44233331 Msa0358720:CDS
TATGCAATCTTGTGTAACAA+GGG 0.660322 3_1:+44235469 None:intergenic
TTCAATACAAGTATTGATGG+GGG 0.677730 3_1:-44234608 Msa0358720:CDS
AATCCTCCATCTGGGCCTCG+AGG 0.680321 3_1:-44232197 Msa0358720:CDS
ATGGCTCTTCATATAAACAG+TGG 0.684583 3_1:-44235331 Msa0358720:CDS
AGTGATGAAGAAGTTGTATG+TGG 0.687872 3_1:+44235429 None:intergenic
GGAGTATAAATTCTACCTCG+AGG 0.694742 3_1:+44232182 None:intergenic
AGCCGAAGTTTATGGCTCTG+GGG 0.711177 3_1:-44234567 Msa0358720:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAATA+AGG - chr3_1:44233244-44233263 Msa0358720:CDS 0.0%
!! AATAATAATAATAATAATAA+GGG - chr3_1:44233245-44233264 Msa0358720:CDS 0.0%
!! CATGATTAATTAAATTTAAA+TGG + chr3_1:44231428-44231447 None:intergenic 10.0%
!! CATTTAAATTTAATTAATCA+TGG - chr3_1:44231426-44231445 Msa0358720:intron 10.0%
!! ATTAGTTCAATTAATTAAAT+TGG + chr3_1:44232125-44232144 None:intergenic 10.0%
!! AATTAATGTATTTAGTTATT+TGG - chr3_1:44233286-44233305 Msa0358720:CDS 10.0%
!! ATTAATTAAATTGGTACATT+TGG + chr3_1:44232116-44232135 None:intergenic 15.0%
!! TTTCTGTTTAAATAGAAAAA+AGG + chr3_1:44232805-44232824 None:intergenic 15.0%
!! TTTAAAAAATTAGTTATGCA+GGG + chr3_1:44233112-44233131 None:intergenic 15.0%
!!! TTTTAAAAAATTAGTTATGC+AGG + chr3_1:44233113-44233132 None:intergenic 15.0%
!! CTAGAAAACATTATAATATA+CGG - chr3_1:44233800-44233819 Msa0358720:intron 15.0%
!! TATAACTTTACAAATGATTT+AGG + chr3_1:44235090-44235109 None:intergenic 15.0%
!!! GTAATTTCATGTTATTTTAT+TGG + chr3_1:44235483-44235502 None:intergenic 15.0%
!! TGTGAAAAAATCACATAATT+CGG - chr3_1:44231205-44231224 Msa0358720:CDS 20.0%
!!! TTTGGTATAATTTTCATTTG+CGG - chr3_1:44231764-44231783 Msa0358720:intron 20.0%
!! TATTAAAGAACGAAAACAAA+AGG - chr3_1:44231839-44231858 Msa0358720:intron 20.0%
!! TAAAAACAATATCAATCACT+AGG + chr3_1:44232021-44232040 None:intergenic 20.0%
!! AGTTAATTAGAGTTTAGATT+GGG - chr3_1:44232402-44232421 Msa0358720:intron 20.0%
!!! TGTACCATAATAATTTGTTA+TGG - chr3_1:44232741-44232760 Msa0358720:intron 20.0%
!! AGTACCATAACAAATTATTA+TGG + chr3_1:44232748-44232767 None:intergenic 20.0%
!! AAATAGAAAAAAGGAATGTT+AGG + chr3_1:44232796-44232815 None:intergenic 20.0%
!!! AGTATTTTTCTTTTAATACG+TGG + chr3_1:44233018-44233037 None:intergenic 20.0%
!! AAGGTAGGTATTTATAAAAA+GGG + chr3_1:44233049-44233068 None:intergenic 20.0%
!! AAAGGTAGGTATTTATAAAA+AGG + chr3_1:44233050-44233069 None:intergenic 20.0%
!! TTTATAAATACCTACCTTTA+AGG - chr3_1:44233051-44233070 Msa0358720:intron 20.0%
!! AGTTTAATTATAATCATGGA+GGG - chr3_1:44233624-44233643 Msa0358720:intron 20.0%
!! AAGTAATCATAAACTATTGT+CGG - chr3_1:44233662-44233681 Msa0358720:intron 20.0%
!!! TTTTTGTCTTAAAGAATTTG+AGG - chr3_1:44233715-44233734 Msa0358720:intron 20.0%
!!! TGATTTTGCATAAATTTTTG+CGG + chr3_1:44233914-44233933 None:intergenic 20.0%
!!! CAAATTTTCAGTTTATATCA+TGG + chr3_1:44234196-44234215 None:intergenic 20.0%
!!! GTTGTCTAAGTAAATATTTT+TGG - chr3_1:44234544-44234563 Msa0358720:intron 20.0%
!!! AAATATTTTTGGTATTCTCA+TGG - chr3_1:44234555-44234574 Msa0358720:intron 20.0%
!!! AATATTTTTGGTATTCTCAT+GGG - chr3_1:44234556-44234575 Msa0358720:intron 20.0%
!!! AAGAATCAGTTTGTTTTTAA+GGG + chr3_1:44234832-44234851 None:intergenic 20.0%
!!! AAAGAATCAGTTTGTTTTTA+AGG + chr3_1:44234833-44234852 None:intergenic 20.0%
!! AAATTGCATTCATAGTAAAT+TGG - chr3_1:44235130-44235149 Msa0358720:intron 20.0%
!! AAAACTACATAATTATCTTG+TGG - chr3_1:44235329-44235348 Msa0358720:CDS 20.0%
!! AAACTACATAATTATCTTGT+GGG - chr3_1:44235330-44235349 Msa0358720:CDS 20.0%
! CATTGAGAATGAAAATTGAT+GGG + chr3_1:44230825-44230844 None:intergenic 25.0%
!! AGTTGAAGATAAGTTGAAAT+TGG - chr3_1:44230943-44230962 Msa0358720:three_prime_UTR 25.0%
!! GTTGAAGATAAGTTGAAATT+GGG - chr3_1:44230944-44230963 Msa0358720:three_prime_UTR 25.0%
! GAAGTAAAAACAATCAATCT+TGG - chr3_1:44231104-44231123 Msa0358720:three_prime_UTR 25.0%
!!! CTTTTTCAGATACCAATTAT+AGG - chr3_1:44231373-44231392 Msa0358720:intron 25.0%
!!! TCTTTAAAGCTACCTATAAT+TGG + chr3_1:44231388-44231407 None:intergenic 25.0%
! TTTAAAGAGAAAAGGCAAAT+TGG - chr3_1:44231400-44231419 Msa0358720:intron 25.0%
! TTAAAGAGAAAAGGCAAATT+GGG - chr3_1:44231401-44231420 Msa0358720:intron 25.0%
!! GATTTTCTAATTTCTACTCA+AGG - chr3_1:44231466-44231485 Msa0358720:intron 25.0%
!! CTCTTATGGTAATTTTAGAT+AGG - chr3_1:44231518-44231537 Msa0358720:intron 25.0%
!!! CATTCAATACAAGTATTGAT+GGG - chr3_1:44231563-44231582 Msa0358720:intron 25.0%
!!! ATTCAATACAAGTATTGATG+GGG - chr3_1:44231564-44231583 Msa0358720:intron 25.0%
! TAGAAGAGTTTCTGAATTTA+CGG + chr3_1:44231725-44231744 None:intergenic 25.0%
! AGACTCTCAATATAATGTAT+CGG + chr3_1:44232342-44232361 None:intergenic 25.0%
! GAGTTAATTAGAGTTTAGAT+TGG - chr3_1:44232401-44232420 Msa0358720:intron 25.0%
!! CTATTTTCTCAAACTACTAT+TGG - chr3_1:44232612-44232631 Msa0358720:intron 25.0%
! GTATTTATAAAAAGGGATAG+AGG + chr3_1:44233042-44233061 None:intergenic 25.0%
! AGCAATATTCTAGATATTTC+TGG - chr3_1:44233166-44233185 Msa0358720:intron 25.0%
! GTTACTAAATATAACTACCA+TGG - chr3_1:44233404-44233423 Msa0358720:intron 25.0%
! TACCATGGTTAATATATATC+TGG - chr3_1:44233419-44233438 Msa0358720:intron 25.0%
! AATTAGTTGATTGTCAGATA+CGG - chr3_1:44233593-44233612 Msa0358720:intron 25.0%
! TCGGAGTTTAATTATAATCA+TGG - chr3_1:44233620-44233639 Msa0358720:intron 25.0%
! GAGTTTAATTATAATCATGG+AGG - chr3_1:44233623-44233642 Msa0358720:intron 25.0%
!! TGTTTTGTAGTGTATAAACT+CGG + chr3_1:44233776-44233795 None:intergenic 25.0%
! GCAAAATTAATAAACACTTG+AGG + chr3_1:44234088-44234107 None:intergenic 25.0%
! TTCTAATCATTAAACTCCTT+TGG + chr3_1:44234294-44234313 None:intergenic 25.0%
! GAGACTTAAATGTAATAAGA+GGG + chr3_1:44234515-44234534 None:intergenic 25.0%
! TGAGACTTAAATGTAATAAG+AGG + chr3_1:44234516-44234535 None:intergenic 25.0%
!!! ATATTTTTGGTATTCTCATG+GGG - chr3_1:44234557-44234576 Msa0358720:intron 25.0%
! GTGTTACAATTGTGTAATTT+CGG + chr3_1:44234740-44234759 None:intergenic 25.0%
! ACACAAGTATTATTATCTGA+AGG + chr3_1:44234804-44234823 None:intergenic 25.0%
!! AAACAAACTGATTCTTTGTT+AGG - chr3_1:44234836-44234855 Msa0358720:intron 25.0%
! ACTTTACAAATGATTTAGGA+GGG + chr3_1:44235086-44235105 None:intergenic 25.0%
! AACTTTACAAATGATTTAGG+AGG + chr3_1:44235087-44235106 None:intergenic 25.0%
! TCACTATACATACAAGAATA+CGG + chr3_1:44235308-44235327 None:intergenic 25.0%
! AGACAAAACTTCATTGAATT+AGG - chr3_1:44235407-44235426 Msa0358720:five_prime_UTR 25.0%
!! TATTTTATTGGAAGCAACTT+TGG + chr3_1:44235471-44235490 None:intergenic 25.0%
TATGCAATCTTGTGTAACAA+GGG + chr3_1:44230707-44230726 None:intergenic 30.0%
ATATGCAATCTTGTGTAACA+AGG + chr3_1:44230708-44230727 None:intergenic 30.0%
CCATTGAGAATGAAAATTGA+TGG + chr3_1:44230826-44230845 None:intergenic 30.0%
! CCATCAATTTTCATTCTCAA+TGG - chr3_1:44230823-44230842 Msa0358720:three_prime_UTR 30.0%
! CTTACTGGAACAATTTTCAA+TGG - chr3_1:44231026-44231045 Msa0358720:three_prime_UTR 30.0%
! TGGAACAATTTTCAATGGAA+TGG - chr3_1:44231031-44231050 Msa0358720:three_prime_UTR 30.0%
TATGTGCAATGCAATTTAGA+AGG + chr3_1:44231083-44231102 None:intergenic 30.0%
TTTCACATTATTAGCAGTGT+TGG + chr3_1:44231192-44231211 None:intergenic 30.0%
! TAGAAATTCCTACCTTTTGA+TGG - chr3_1:44231316-44231335 Msa0358720:CDS 30.0%
! AGAAATTCCTACCTTTTGAT+GGG - chr3_1:44231317-44231336 Msa0358720:CDS 30.0%
! AGGAAGTTGACAAACATTTT+AGG - chr3_1:44231343-44231362 Msa0358720:intron 30.0%
!! TAGGTAGCTTTAAAGAGAAA+AGG - chr3_1:44231392-44231411 Msa0358720:intron 30.0%
TCATCATCAATCTTCTCTTA+TGG - chr3_1:44231504-44231523 Msa0358720:intron 30.0%
!! GCATTCAATACAAGTATTGA+TGG - chr3_1:44231562-44231581 Msa0358720:intron 30.0%
!! TTCAATACAAGTATTGATGG+GGG - chr3_1:44231565-44231584 Msa0358720:intron 30.0%
!!! CTCTTTTTTAAGCTTGCTTT+CGG - chr3_1:44231697-44231716 Msa0358720:intron 30.0%
GTAAATTCAGAAACTCTTCT+AGG - chr3_1:44231724-44231743 Msa0358720:intron 30.0%
! GAAGGTAAAGCTTACATTTT+TGG - chr3_1:44231746-44231765 Msa0358720:intron 30.0%
TCATTTGCGGTTATTAATCA+AGG - chr3_1:44231777-44231796 Msa0358720:intron 30.0%
!! TCACCAATGAATTGTTTTTC+AGG - chr3_1:44232213-44232232 Msa0358720:CDS 30.0%
!! CACCAATGAATTGTTTTTCA+GGG - chr3_1:44232214-44232233 Msa0358720:CDS 30.0%
TACCCTGAAAAACAATTCAT+TGG + chr3_1:44232219-44232238 None:intergenic 30.0%
!!! TGTTTTTCAGGGTATATTGA+TGG - chr3_1:44232225-44232244 Msa0358720:CDS 30.0%
TGTTCAAAAAGGACTTGTAA+AGG - chr3_1:44232260-44232279 Msa0358720:intron 30.0%
TACACAACAGGTAATAATCA+TGG + chr3_1:44232316-44232335 None:intergenic 30.0%
! AAGTTTTCTTCTCTGTCTTA+AGG - chr3_1:44232519-44232538 Msa0358720:intron 30.0%
! TTTACTTGATTTGAAGCCAA+TGG + chr3_1:44232872-44232891 None:intergenic 30.0%
TAAACTACAGCCTCATTTAT+AGG - chr3_1:44232888-44232907 Msa0358720:intron 30.0%
AAACTACAGCCTCATTTATA+GGG - chr3_1:44232889-44232908 Msa0358720:intron 30.0%
!!! CGTGGTTTTGAATAGTAAAA+AGG + chr3_1:44233000-44233019 None:intergenic 30.0%
!! TACCTTTAAGGTGAATAAGT+GGG - chr3_1:44233063-44233082 Msa0358720:intron 30.0%
AGTAACAAATCTCAGTGTTA+TGG + chr3_1:44233390-44233409 None:intergenic 30.0%
GACCAGATATATATTAACCA+TGG + chr3_1:44233424-44233443 None:intergenic 30.0%
CATACGCACTTGATATTTAA+TGG - chr3_1:44233462-44233481 Msa0358720:intron 30.0%
CATTAGCACTTGATACTTAA+TGG - chr3_1:44233488-44233507 Msa0358720:intron 30.0%
TACTACAAAAACCTGGAAAA+TGG + chr3_1:44233529-44233548 None:intergenic 30.0%
! TCCAGGTTTTTGTAGTATTT+AGG - chr3_1:44233532-44233551 Msa0358720:intron 30.0%
ACCTAAATACTACAAAAACC+TGG + chr3_1:44233536-44233555 None:intergenic 30.0%
ATTAGTTGATTGTCAGATAC+GGG - chr3_1:44233594-44233613 Msa0358720:intron 30.0%
!! TAAACTATTGTCGGTTTGTT+TGG - chr3_1:44233671-44233690 Msa0358720:intron 30.0%
!! AAACTATTGTCGGTTTGTTT+GGG - chr3_1:44233672-44233691 Msa0358720:intron 30.0%
GCAAAATCATTATCTTAAGC+AGG - chr3_1:44233925-44233944 Msa0358720:CDS 30.0%
AGAAAAGTTGTACCTTTGTT+AGG + chr3_1:44234023-44234042 None:intergenic 30.0%
TGAATTATACCGATAGTACT+TGG - chr3_1:44234060-44234079 Msa0358720:intron 30.0%
GTACAATAAAACTTCTACAC+AGG - chr3_1:44234151-44234170 Msa0358720:intron 30.0%
! ATTAAACTCCTTTGGAAACA+AGG + chr3_1:44234286-44234305 None:intergenic 30.0%
! AATTTGTTCTGTGAGAATCA+CGG - chr3_1:44234334-44234353 Msa0358720:CDS 30.0%
AATCTTACCAAGTACAACAA+AGG - chr3_1:44234368-44234387 Msa0358720:intron 30.0%
ACAATAGTGATATTAGTGAG+AGG + chr3_1:44234446-44234465 None:intergenic 30.0%
AATAAGAGGGTTACTTACTT+TGG + chr3_1:44234502-44234521 None:intergenic 30.0%
!!! TATTTTTGGTATTCTCATGG+GGG - chr3_1:44234558-44234577 Msa0358720:intron 30.0%
! AATTGCACTTTTAGTCTATC+AGG + chr3_1:44234762-44234781 None:intergenic 30.0%
TTTGTTAGGTATCACTAAAC+TGG - chr3_1:44234850-44234869 Msa0358720:intron 30.0%
GAACAAGCTGAAGAATTTAA+AGG - chr3_1:44234921-44234940 Msa0358720:intron 30.0%
! TGAAGAATTTAAAGGTGCAT+TGG - chr3_1:44234929-44234948 Msa0358720:intron 30.0%
! GAAGAATTTAAAGGTGCATT+GGG - chr3_1:44234930-44234949 Msa0358720:intron 30.0%
TCGAAAATTAAGCCTGTTAT+TGG - chr3_1:44234999-44235018 Msa0358720:intron 30.0%
!! ATGTTTCAGAGTTTTTCAAC+TGG + chr3_1:44235029-44235048 None:intergenic 30.0%
!! AGTTGAAAAACTCTGAAACA+TGG - chr3_1:44235028-44235047 Msa0358720:intron 30.0%
TTTACAAATGATTTAGGAGG+GGG + chr3_1:44235084-44235103 None:intergenic 30.0%
CTTTACAAATGATTTAGGAG+GGG + chr3_1:44235085-44235104 None:intergenic 30.0%
! GAATAAAGTGCTTATCTACA+TGG - chr3_1:44235195-44235214 Msa0358720:CDS 30.0%
!! TCCATTTTTGTTCTTCTCAT+TGG - chr3_1:44235224-44235243 Msa0358720:CDS 30.0%
ACCAATGAGAAGAACAAAAA+TGG + chr3_1:44235228-44235247 None:intergenic 30.0%
ACATAATTATCTTGTGGGTT+AGG - chr3_1:44235335-44235354 Msa0358720:exon 30.0%
!! AAGTTTTGTCTGCATATCAT+TGG + chr3_1:44235398-44235417 None:intergenic 30.0%
AGTGATGAAGAAGTTGTATG+TGG + chr3_1:44230747-44230766 None:intergenic 35.0%
ATGGCTCTTCATATAAACAG+TGG - chr3_1:44230842-44230861 Msa0358720:three_prime_UTR 35.0%
!! AGTGGTTGTTTTACTGTGAT+GGG - chr3_1:44230860-44230879 Msa0358720:three_prime_UTR 35.0%
! GAAGATAAGTTGAAATTGGG+TGG - chr3_1:44230947-44230966 Msa0358720:three_prime_UTR 35.0%
!! GATTTGAAGGTGTCAACAAT+TGG - chr3_1:44230974-44230993 Msa0358720:three_prime_UTR 35.0%
! AAGGTGTCAACAATTGGAAT+TGG - chr3_1:44230980-44230999 Msa0358720:three_prime_UTR 35.0%
TACTATGTAGCTATGAAGCA+CGG - chr3_1:44231138-44231157 Msa0358720:exon 35.0%
! TTCGGTGTAATTGTAAGTGT+TGG - chr3_1:44231223-44231242 Msa0358720:CDS 35.0%
TTCTACAAAGCTATGAAGCA+TGG + chr3_1:44231301-44231320 None:intergenic 35.0%
AACTTCCTTATCCCATCAAA+AGG + chr3_1:44231331-44231350 None:intergenic 35.0%
! ATTCAGAAACTCTTCTAGGA+AGG - chr3_1:44231728-44231747 Msa0358720:intron 35.0%
! GTTGGTGTTTCAAACTATAG+TGG - chr3_1:44232285-44232304 Msa0358720:intron 35.0%
TATTGAGAGTCTTACGAGAT+AGG - chr3_1:44232350-44232369 Msa0358720:intron 35.0%
TTACGAGATAGGATTCAGTT+AGG - chr3_1:44232361-44232380 Msa0358720:intron 35.0%
TTAGAGTTTAGATTGGGAGT+TGG - chr3_1:44232408-44232427 Msa0358720:intron 35.0%
ATGCCTTATCTCAGTAAACT+GGG + chr3_1:44232547-44232566 None:intergenic 35.0%
AATGCCTTATCTCAGTAAAC+TGG + chr3_1:44232548-44232567 None:intergenic 35.0%
TCTCAAACTACTATTGGTGT+CGG - chr3_1:44232618-44232637 Msa0358720:intron 35.0%
! TCTTCACACCATTTTCTTCA+GGG + chr3_1:44232916-44232935 None:intergenic 35.0%
! TTCTTCACACCATTTTCTTC+AGG + chr3_1:44232917-44232936 None:intergenic 35.0%
AAGAAAACCTGTGATGAACT+TGG - chr3_1:44232932-44232951 Msa0358720:intron 35.0%
AGAAAACCTGTGATGAACTT+GGG - chr3_1:44232933-44232952 Msa0358720:intron 35.0%
CACTTATTCACCTTAAAGGT+AGG + chr3_1:44233064-44233083 None:intergenic 35.0%
!! CTACCTTTAAGGTGAATAAG+TGG - chr3_1:44233062-44233081 Msa0358720:intron 35.0%
AACCCACTTATTCACCTTAA+AGG + chr3_1:44233068-44233087 None:intergenic 35.0%
AATTAGTTATGCAGGGTATG+AGG + chr3_1:44233105-44233124 None:intergenic 35.0%
TGGAAGATTGCTTATATCTC+AGG - chr3_1:44233306-44233325 Msa0358720:CDS 35.0%
GGAAGATTGCTTATATCTCA+GGG - chr3_1:44233307-44233326 Msa0358720:CDS 35.0%
AGGGACTTATAATTAGAGAC+AGG - chr3_1:44233351-44233370 Msa0358720:CDS 35.0%
TATCAAGTGCGTATGTTTCA+TGG + chr3_1:44233457-44233476 None:intergenic 35.0%
! TTGTTTGGGAGAGTTTTTGT+AGG - chr3_1:44233686-44233705 Msa0358720:intron 35.0%
! TGTTTGGGAGAGTTTTTGTA+GGG - chr3_1:44233687-44233706 Msa0358720:intron 35.0%
ATGGAGTTGGAATTCGTTAT+GGG + chr3_1:44233859-44233878 None:intergenic 35.0%
AATGGAGTTGGAATTCGTTA+TGG + chr3_1:44233860-44233879 None:intergenic 35.0%
ACAACTTTCATGAATGGAGT+TGG + chr3_1:44233872-44233891 None:intergenic 35.0%
GTATGCACAACTTTCATGAA+TGG + chr3_1:44233878-44233897 None:intergenic 35.0%
TACTCCAGAATTCCTAACAA+AGG - chr3_1:44234008-44234027 Msa0358720:intron 35.0%
TGTACCTTTGTTAGGAATTC+TGG + chr3_1:44234015-44234034 None:intergenic 35.0%
CTGAAGAAGATCACTGAAAT+AGG - chr3_1:44234122-44234141 Msa0358720:intron 35.0%
! TCTAATGCCTTTGTTGTACT+TGG + chr3_1:44234378-44234397 None:intergenic 35.0%
!! TACAACAAAGGCATTAGACA+TGG - chr3_1:44234380-44234399 Msa0358720:intron 35.0%
AATTCGCTCAATTTGAACGT+GGG + chr3_1:44234474-44234493 None:intergenic 35.0%
TAATTCGCTCAATTTGAACG+TGG + chr3_1:44234475-44234494 None:intergenic 35.0%
TTGTAACAAGATGCATGCTT+AGG - chr3_1:44234683-44234702 Msa0358720:intron 35.0%
TGTAACAAGATGCATGCTTA+GGG - chr3_1:44234684-44234703 Msa0358720:intron 35.0%
! TAATTCCTGCATTTGAAACC+TGG - chr3_1:44234710-44234729 Msa0358720:intron 35.0%
! AATTTAAAGGTGCATTGGGA+TGG - chr3_1:44234934-44234953 Msa0358720:intron 35.0%
ATGGAGATTGACTAATGAAG+AGG - chr3_1:44234953-44234972 Msa0358720:intron 35.0%
! ATTACCAATTTCAGTGTCGA+TGG - chr3_1:44235269-44235288 Msa0358720:CDS 35.0%
!! TTACCAATTTCAGTGTCGAT+GGG - chr3_1:44235270-44235289 Msa0358720:CDS 35.0%
!! AATTATCTTGTGGGTTAGGA+AGG - chr3_1:44235339-44235358 Msa0358720:exon 35.0%
!! CAGTGGTTGTTTTACTGTGA+TGG - chr3_1:44230859-44230878 Msa0358720:three_prime_UTR 40.0%
! AGTAAAAGCTGTTGCTTCAG+AGG - chr3_1:44230901-44230920 Msa0358720:three_prime_UTR 40.0%
! GTAAAAGCTGTTGCTTCAGA+GGG - chr3_1:44230902-44230921 Msa0358720:three_prime_UTR 40.0%
!! ATTGGGTGGTTCTGATTTGA+AGG - chr3_1:44230961-44230980 Msa0358720:three_prime_UTR 40.0%
CAACAATTGGAATTGGAGCT+TGG - chr3_1:44230987-44231006 Msa0358720:three_prime_UTR 40.0%
!! TGTAAGTGTTGGTGTAGTGT+CGG - chr3_1:44231234-44231253 Msa0358720:CDS 40.0%
TATGAAGCATGGACACTCAT+CGG + chr3_1:44231290-44231309 None:intergenic 40.0%
! TCCTACCTTTTGATGGGATA+AGG - chr3_1:44231323-44231342 Msa0358720:intron 40.0%
TCCTTATCCCATCAAAAGGT+AGG + chr3_1:44231327-44231346 None:intergenic 40.0%
GCGACTTCAACTTCAACATT+TGG + chr3_1:44231867-44231886 None:intergenic 40.0%
! AGTCATTTCGAGTCGATCAA+GGG + chr3_1:44231955-44231974 None:intergenic 40.0%
! AAGTCATTTCGAGTCGATCA+AGG + chr3_1:44231956-44231975 None:intergenic 40.0%
TGGATCTGTATCAGCTTCAT+TGG - chr3_1:44231979-44231998 Msa0358720:intron 40.0%
!! AAGTAACGCGCTTGTTTTTC+AGG - chr3_1:44232063-44232082 Msa0358720:CDS 40.0%
! TCAGGGTATATTGATGGTCT+AGG - chr3_1:44232231-44232250 Msa0358720:intron 40.0%
CTAGGTGATGCTGTTCAAAA+AGG - chr3_1:44232249-44232268 Msa0358720:intron 40.0%
AAAGGACTTGTAAAGGCTGT+TGG - chr3_1:44232267-44232286 Msa0358720:intron 40.0%
! ATGTATCGGTACTACACAAC+AGG + chr3_1:44232328-44232347 None:intergenic 40.0%
GTTCCCAGTTTACTGAGATA+AGG - chr3_1:44232541-44232560 Msa0358720:intron 40.0%
AATCACAAGTGTTTGTGCGT+CGG + chr3_1:44232580-44232599 None:intergenic 40.0%
GGTTCATAGATCATCTGTCT+TGG - chr3_1:44232677-44232696 Msa0358720:intron 40.0%
!! CAAGAAGAGAGGTATTCCAT+TGG - chr3_1:44232853-44232872 Msa0358720:intron 40.0%
TATAGGGTCCCTGAAGAAAA+TGG - chr3_1:44232905-44232924 Msa0358720:intron 40.0%
TGTAATCCCAAGTTCATCAC+AGG + chr3_1:44232942-44232961 None:intergenic 40.0%
GCATATTCACCAATAGCTCA+AGG - chr3_1:44232968-44232987 Msa0358720:intron 40.0%
AGGATTTCACCTTGAGCTAT+TGG + chr3_1:44232980-44232999 None:intergenic 40.0%
!! AGGTGAATAAGTGGGTTGTT+CGG - chr3_1:44233071-44233090 Msa0358720:intron 40.0%
! CGATTGAGAATCCATTTTCC+AGG - chr3_1:44233515-44233534 Msa0358720:intron 40.0%
GATTGTCAGATACGGGAATT+CGG - chr3_1:44233601-44233620 Msa0358720:intron 40.0%
! GTTTGGGAGAGTTTTTGTAG+GGG - chr3_1:44233688-44233707 Msa0358720:intron 40.0%
GGAATTCGTTATGGGCATAT+GGG + chr3_1:44233851-44233870 None:intergenic 40.0%
TGGAATTCGTTATGGGCATA+TGG + chr3_1:44233852-44233871 None:intergenic 40.0%
TCTTAAGCAGGTGTTCTTAC+TGG - chr3_1:44233937-44233956 Msa0358720:CDS 40.0%
GGAGTATAAATTCTACCTCG+AGG + chr3_1:44233994-44234013 None:intergenic 40.0%
CTTGAGGAACCAAGTACTAT+CGG + chr3_1:44234072-44234091 None:intergenic 40.0%
TTATATCGCCATGTGGTCAT+TGG - chr3_1:44234405-44234424 Msa0358720:intron 40.0%
CAATTAAGCCAATGACCACA+TGG + chr3_1:44234416-44234435 None:intergenic 40.0%
ATTCGCTCAATTTGAACGTG+GGG + chr3_1:44234473-44234492 None:intergenic 40.0%
TGCAGCACATGCACTAATAA+TGG + chr3_1:44234604-44234623 None:intergenic 40.0%
ACAATCAAGTCCGTTGTCAT+TGG + chr3_1:44234667-44234686 None:intergenic 40.0%
TTGTGTAATTTCGGTTCTCC+AGG + chr3_1:44234731-44234750 None:intergenic 40.0%
TTAGGTATCACTAAACTGGC+TGG - chr3_1:44234854-44234873 Msa0358720:intron 40.0%
GGAAATGTTGTACCAATTCC+TGG - chr3_1:44234885-44234904 Msa0358720:intron 40.0%
TCAACTGGAAAGCCAATAAC+AGG + chr3_1:44235014-44235033 None:intergenic 40.0%
!! CTTTGGAATTCGTGGTTGAA+AGG + chr3_1:44235454-44235473 None:intergenic 40.0%
TTGGAATTGGAGCTTGGTCT+TGG - chr3_1:44230993-44231012 Msa0358720:three_prime_UTR 45.0%
! TGGAATTGGAGCTTGGTCTT+GGG - chr3_1:44230994-44231013 Msa0358720:three_prime_UTR 45.0%
CTTGGGGTGATACTACTTAC+TGG - chr3_1:44231011-44231030 Msa0358720:three_prime_UTR 45.0%
! TCATCGGATTAGACGTGTTC+TGG + chr3_1:44231274-44231293 None:intergenic 45.0%
! AACTTCGGCTGTGTCGATAA+AGG + chr3_1:44231596-44231615 None:intergenic 45.0%
ATCGACACAGCCGAAGTTTA+TGG - chr3_1:44231598-44231617 Msa0358720:intron 45.0%
GCGCACTTAGAACACTTTCA+CGG + chr3_1:44231923-44231942 None:intergenic 45.0%
! TCGACTCGAAATGACTTCTG+TGG - chr3_1:44231959-44231978 Msa0358720:intron 45.0%
!!! TGTTTTTCAGGCCTGGAGTA+TGG - chr3_1:44232075-44232094 Msa0358720:intron 45.0%
!!! GTTTTTCAGGCCTGGAGTAT+GGG - chr3_1:44232076-44232095 Msa0358720:intron 45.0%
!!! TTTTTCAGGCCTGGAGTATG+GGG - chr3_1:44232077-44232096 Msa0358720:intron 45.0%
CACCAACAAATCACTGACAC+CGG + chr3_1:44232658-44232677 None:intergenic 45.0%
TATGCACAGCTCAAGAAGAG+AGG - chr3_1:44232842-44232861 Msa0358720:intron 45.0%
CTTCAGGGACCCTATAAATG+AGG + chr3_1:44232901-44232920 None:intergenic 45.0%
!! GGTGAATAAGTGGGTTGTTC+GGG - chr3_1:44233072-44233091 Msa0358720:intron 45.0%
!! GTGAATAAGTGGGTTGTTCG+GGG - chr3_1:44233073-44233092 Msa0358720:intron 45.0%
GTGCGTATGTTTCATGGAAG+AGG + chr3_1:44233451-44233470 None:intergenic 45.0%
TCAGTGATCTTCTTCAGCAG+TGG + chr3_1:44234119-44234138 None:intergenic 45.0%
!! TCATCCTGCCTTGTTTCCAA+AGG - chr3_1:44234275-44234294 Msa0358720:CDS 45.0%
! AACTCCTTTGGAAACAAGGC+AGG + chr3_1:44234282-44234301 None:intergenic 45.0%
!! CATGGTGTTATATCGCCATG+TGG - chr3_1:44234398-44234417 Msa0358720:intron 45.0%
GTATTCTCATGGGGGCAAAA+AGG - chr3_1:44234566-44234585 Msa0358720:intron 45.0%
GTTGTCATTGGCATTGTCGA+CGG + chr3_1:44234655-44234674 None:intergenic 45.0%
GTCGACAATGCCAATGACAA+CGG - chr3_1:44234654-44234673 Msa0358720:intron 45.0%
GTTCTCCAGGTTTCAAATGC+AGG + chr3_1:44234718-44234737 None:intergenic 45.0%
!!! GCTGTTTTAGCACCAGGAAT+TGG + chr3_1:44234900-44234919 None:intergenic 45.0%
!!! TGTTCTGCTGTTTTAGCACC+AGG + chr3_1:44234906-44234925 None:intergenic 45.0%
TGACCCATCGACACTGAAAT+TGG + chr3_1:44235276-44235295 None:intergenic 45.0%
!! GGAAGCAACTTTGGAATTCG+TGG + chr3_1:44235462-44235481 None:intergenic 45.0%
!!! TTATTATTTTTTTAGAAAAT+AGG + chr3_1:44230793-44230812 None:intergenic 5.0%
!! TAATTATTTAATATAGTAAA+TGG - chr3_1:44232141-44232160 Msa0358720:intron 5.0%
!! ATAATAATAATAATAATAAG+GGG - chr3_1:44233246-44233265 Msa0358720:CDS 5.0%
!!! TTTTTTTTTTTTTTTTTGAA+AGG - chr3_1:44233331-44233350 Msa0358720:CDS 5.0%
!!! TTTTTTTTTTTTTTTTGAAA+GGG - chr3_1:44233332-44233351 Msa0358720:CDS 5.0%
!! GGAATTGGAGCTTGGTCTTG+GGG - chr3_1:44230995-44231014 Msa0358720:three_prime_UTR 50.0%
GTAGCTATGAAGCACGGACA+CGG - chr3_1:44231144-44231163 Msa0358720:exon 50.0%
ACAGCCGAAGTTTATGGCTC+TGG - chr3_1:44231604-44231623 Msa0358720:intron 50.0%
CAGCCGAAGTTTATGGCTCT+GGG - chr3_1:44231605-44231624 Msa0358720:intron 50.0%
! AGCCGAAGTTTATGGCTCTG+GGG - chr3_1:44231606-44231625 Msa0358720:intron 50.0%
CACCCCAGAGCCATAAACTT+CGG + chr3_1:44231611-44231630 None:intergenic 50.0%
CTTTCACGGCCTAATCTCCA+TGG + chr3_1:44231909-44231928 None:intergenic 50.0%
CCTTCATTTCCCCATACTCC+AGG + chr3_1:44232089-44232108 None:intergenic 50.0%
CCTGGAGTATGGGGAAATGA+AGG - chr3_1:44232086-44232105 Msa0358720:intron 50.0%
! GTCCGGTGTCAGTGATTTGT+TGG - chr3_1:44232653-44232672 Msa0358720:intron 50.0%
!! CGGTGTCAGTGATTTGTTGG+TGG - chr3_1:44232656-44232675 Msa0358720:intron 50.0%
! TGGGAGAGTTTTTGTAGGGG+AGG - chr3_1:44233691-44233710 Msa0358720:intron 50.0%
! GGGAGAGTTTTTGTAGGGGA+GGG - chr3_1:44233692-44233711 Msa0358720:intron 50.0%
ACTCCACGAAATCCTCCATC+TGG - chr3_1:44233967-44233986 Msa0358720:intron 50.0%
CTCCACGAAATCCTCCATCT+GGG - chr3_1:44233968-44233987 Msa0358720:intron 50.0%
GCATTGTCGACGGTTCACAA+GGG + chr3_1:44234645-44234664 None:intergenic 50.0%
CTAAACTGGCTGGTAGCTCA+AGG - chr3_1:44234864-44234883 Msa0358720:intron 50.0%
GGTAGCTGAGCTACGAAGTT+TGG - chr3_1:44234974-44234993 Msa0358720:intron 50.0%
!! GTGTAGTGTCGGTGTCAGAC+AGG - chr3_1:44231245-44231264 Msa0358720:CDS 55.0%
CCATGGCAGTGCAGCAAACT+TGG + chr3_1:44231892-44231911 None:intergenic 55.0%
!! CCAAGTTTGCTGCACTGCCA+TGG - chr3_1:44231889-44231908 Msa0358720:intron 55.0%
GCTGCACTGCCATGGAGATT+AGG - chr3_1:44231897-44231916 Msa0358720:intron 55.0%
!!! ACGCGCTTGTTTTTCAGGCC+TGG - chr3_1:44232068-44232087 Msa0358720:intron 55.0%
GTGTTTGTGCGTCGGACACT+CGG + chr3_1:44232572-44232591 None:intergenic 55.0%
!! GTCGGTGTCATTGTCGTGTC+CGG - chr3_1:44232636-44232655 Msa0358720:intron 55.0%
ATTCTACCTCGAGGCCCAGA+TGG + chr3_1:44233985-44234004 None:intergenic 55.0%
GGCATTGTCGACGGTTCACA+AGG + chr3_1:44234646-44234665 None:intergenic 55.0%
GGCCCAGATGGAGGATTTCG+TGG + chr3_1:44233973-44233992 None:intergenic 60.0%
AATCCTCCATCTGGGCCTCG+AGG - chr3_1:44233976-44233995 Msa0358720:intron 60.0%
CTACCTCGAGGCCCAGATGG+AGG + chr3_1:44233982-44234001 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 44230693 44235502 44230693 ID=Msa0358720;Name=Msa0358720
chr3_1 mRNA 44230693 44235502 44230693 ID=Msa0358720-mRNA-1;Parent=Msa0358720;Name=Msa0358720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=149|1|1|1|1|1|10|459|367
chr3_1 exon 44230693 44231337 44230693 ID=Msa0358720-mRNA-1:exon:7849;Parent=Msa0358720-mRNA-1
chr3_1 exon 44232023 44232085 44232023 ID=Msa0358720-mRNA-1:exon:7848;Parent=Msa0358720-mRNA-1
chr3_1 exon 44232166 44232248 44232166 ID=Msa0358720-mRNA-1:exon:7847;Parent=Msa0358720-mRNA-1
chr3_1 exon 44233206 44233373 44233206 ID=Msa0358720-mRNA-1:exon:7846;Parent=Msa0358720-mRNA-1
chr3_1 exon 44233889 44233960 44233889 ID=Msa0358720-mRNA-1:exon:7845;Parent=Msa0358720-mRNA-1
chr3_1 exon 44234088 44234110 44234088 ID=Msa0358720-mRNA-1:exon:7844;Parent=Msa0358720-mRNA-1
chr3_1 exon 44234195 44234359 44234195 ID=Msa0358720-mRNA-1:exon:7843;Parent=Msa0358720-mRNA-1
chr3_1 exon 44234446 44234486 44234446 ID=Msa0358720-mRNA-1:exon:7842;Parent=Msa0358720-mRNA-1
chr3_1 exon 44234568 44234659 44234568 ID=Msa0358720-mRNA-1:exon:7841;Parent=Msa0358720-mRNA-1
chr3_1 exon 44235143 44235502 44235143 ID=Msa0358720-mRNA-1:exon:7840;Parent=Msa0358720-mRNA-1
chr3_1 five_prime_UTR 44235354 44235502 44235354 ID=Msa0358720-mRNA-1:five_prime_utr;Parent=Msa0358720-mRNA-1
chr3_1 CDS 44235143 44235353 44235143 ID=Msa0358720-mRNA-1:cds;Parent=Msa0358720-mRNA-1
chr3_1 CDS 44234568 44234659 44234568 ID=Msa0358720-mRNA-1:cds;Parent=Msa0358720-mRNA-1
chr3_1 CDS 44234446 44234486 44234446 ID=Msa0358720-mRNA-1:cds;Parent=Msa0358720-mRNA-1
chr3_1 CDS 44234195 44234359 44234195 ID=Msa0358720-mRNA-1:cds;Parent=Msa0358720-mRNA-1
chr3_1 CDS 44234088 44234110 44234088 ID=Msa0358720-mRNA-1:cds;Parent=Msa0358720-mRNA-1
chr3_1 CDS 44233889 44233960 44233889 ID=Msa0358720-mRNA-1:cds;Parent=Msa0358720-mRNA-1
chr3_1 CDS 44233206 44233373 44233206 ID=Msa0358720-mRNA-1:cds;Parent=Msa0358720-mRNA-1
chr3_1 CDS 44232166 44232248 44232166 ID=Msa0358720-mRNA-1:cds;Parent=Msa0358720-mRNA-1
chr3_1 CDS 44232023 44232085 44232023 ID=Msa0358720-mRNA-1:cds;Parent=Msa0358720-mRNA-1
chr3_1 CDS 44231152 44231337 44231152 ID=Msa0358720-mRNA-1:cds;Parent=Msa0358720-mRNA-1
chr3_1 three_prime_UTR 44230693 44231151 44230693 ID=Msa0358720-mRNA-1:three_prime_utr;Parent=Msa0358720-mRNA-1
Gene Sequence

>Msa0358720

ATGGCTCTTCATATAAACAGTGGTTGTTTTACTGTGATGGGTCACTGTAGAGTTCAAAGAGTAAAAGCTGTTGCTTCAGAGGGTTCTTCTGCTAATGTTACAGTTGAAGATAAGTTGAAATTGGGTGGTTCTGATTTGAAGGTGTCAACAATTGGAATTGGAGCTTGGTCTTGGGGTGATACTACTTACTGGAACAATTTTCAATGGAATGATAGGAATGAGAAAGCTGCTAGAGATGCATTCAATACAAGTATTGATGGGGGTCTAACCTTTATCGACACAGCCGAAGTTTATGGCTCTGGGCTTGCTTTCGGAGCCGTAAATTCAGAAACTCTTCTAGGAAGATTTATTAAAGAACGAAAACAAAAGGATCCAAATGTTGAAGTTGAAGTCGCGACCAAGTTTGCTGCACTGCCATGGAGATTAGGCCGTGAAAGTGTTCTAAGTGCGCTTAAAGATTCCCTTGATCGACTCGAAATGACTTCTGTGGATCTGTATCAGCTTCATTGGCCTGGAGTATGGGGAAATGAAGGGTATATTGATGGTCTAGGTGATGCTGTTCAAAAAGGACTTGTAAAGGCTGTTGGTGTTTCAAACTATAGTGAAAAACGACTACGCGAAGCATATGCACAGCTCAAGAAGAGAGGTATTCCATTGGCTTCAAATCAAGTAAACTACAGCCTCATTTATAGGGTCCCTGAAGAAAATGGTGTGAAGAAAACCTGTGATGAACTTGGGATTACATTGATTGCATATTCACCAATAGCTCAAGGTGTTCTTACTGGAAAGTATACTCCACGAAATCCTCCATCTGGGCCTCGAGGTAGAATTTATACTCCAGAATTCCTAACAAAGCTTCAACCACTGCTGAAGAAGATCACTGAAATAGGAGACAAGTACAATAAAACTTCTACACAGGTATCACTAAACTGGCTGGTAGCTCAAGGAAATGTTGTACCAATTCCTGGTGCTAAAACAGCAGAACAAGCTGAAGAATTTAAAGGTGCATTGGGATGGAGATTGACTAATGAAGAGGTAGCTGAGCTACGAAGTTTGGCGTCGAAAATTAAGCCTGTTATTGGCTTTCCAGTTGAAAAACTCTGA

Protein sequence

>Msa0358720

MALHINSGCFTVMGHCRVQRVKAVASEGSSANVTVEDKLKLGGSDLKVSTIGIGAWSWGDTTYWNNFQWNDRNEKAARDAFNTSIDGGLTFIDTAEVYGSGLAFGAVNSETLLGRFIKERKQKDPNVEVEVATKFAALPWRLGRESVLSALKDSLDRLEMTSVDLYQLHWPGVWGNEGYIDGLGDAVQKGLVKAVGVSNYSEKRLREAYAQLKKRGIPLASNQVNYSLIYRVPEENGVKKTCDELGITLIAYSPIAQGVLTGKYTPRNPPSGPRGRIYTPEFLTKLQPLLKKITEIGDKYNKTSTQVSLNWLVAQGNVVPIPGAKTAEQAEEFKGALGWRLTNEEVAELRSLASKIKPVIGFPVEKL*