AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0672350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672350 MtrunA17_Chr4g0014921 95.357 280 13 0 1 280 1 280 0.0 545
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672350 AT1G72030.1 47.244 254 111 6 30 276 19 256 3.41e-62 197

Find 62 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTATATGTTCAAATTTA+AGG 0.112410 4_4:+17212656 Msa0672350:CDS
AATTAATATTCTACTTAATT+AGG 0.161235 4_4:-17214402 None:intergenic
CAAGAGTACCTTTACATTTC+AGG 0.210309 4_4:+17213880 Msa0672350:CDS
ATCCACCATGGACAAGTAAT+TGG 0.234201 4_4:+17214331 Msa0672350:CDS
TAACATGCTTATGAGAAATA+TGG 0.235332 4_4:-17212639 None:intergenic
TTTGTTCTTTCAATTCTTTA+AGG 0.264149 4_4:+17212990 Msa0672350:CDS
AAGAGCTTATGAAGAAGATT+TGG 0.266902 4_4:+17214260 Msa0672350:CDS
TAGCAGTATCCAATGCTTTC+AGG 0.268356 4_4:+17213905 Msa0672350:CDS
AATCTTCTTCATAAGCTCTT+AGG 0.289976 4_4:-17214257 None:intergenic
AAATAGGCTGAAGTGCTTTC+AGG 0.312360 4_4:+17213524 Msa0672350:intron
AAACTCATTACCCCACAAAT+TGG 0.313360 4_4:-17214229 None:intergenic
TTCAGACAAAATATTAGAAA+TGG 0.378115 4_4:+17214430 Msa0672350:three_prime_UTR
TGAAAATATGAAGCAAAAGT+TGG 0.383459 4_4:+17212846 Msa0672350:CDS
GTTAACTCAGTTTCTACAAT+TGG 0.383586 4_4:-17212531 None:intergenic
GTGACATAATTTCCAATTTG+TGG 0.387153 4_4:+17214217 Msa0672350:CDS
ATTATATAGGTATGCATGTT+TGG 0.387890 4_4:+17213756 Msa0672350:intron
AACATGCTTATGAGAAATAT+GGG 0.394470 4_4:-17212638 None:intergenic
TAACAACAAATGTACCTATC+AGG 0.398497 4_4:-17213575 None:intergenic
AGAGCTTATGAAGAAGATTT+GGG 0.419407 4_4:+17214261 Msa0672350:CDS
TGACATAATTTCCAATTTGT+GGG 0.426965 4_4:+17214218 Msa0672350:CDS
GTGAATATGGATGGAGGATA+AGG 0.442867 4_4:+17212881 Msa0672350:CDS
TTTGATTGATCTACTGCATA+AGG 0.443397 4_4:+17214651 Msa0672350:three_prime_UTR
AGGTACTCTTGTGCTTCAGC+AGG 0.452395 4_4:-17213868 None:intergenic
GATTCATCAAAGGAACTTGT+AGG 0.457006 4_4:+17213796 Msa0672350:CDS
TTAAATACTCACCTCCTGAT+AGG 0.463612 4_4:+17213561 Msa0672350:CDS
AGTTAACATTAACAAACTAT+AGG 0.469382 4_4:+17212547 Msa0672350:five_prime_UTR
TCCACCATGGACAAGTAATT+GGG 0.475166 4_4:+17214332 Msa0672350:CDS
GCGATGTACGAGAGAGGGAC+AGG 0.482429 4_4:+17214773 Msa0672350:three_prime_UTR
TGATGACACTGAAATAGTAT+TGG 0.500661 4_4:-17214533 None:intergenic
TGCTGATCAGAAAGTGATGT+TGG 0.505427 4_4:+17212807 Msa0672350:CDS
AAATCATTGAAAAGAGCTAC+AGG 0.509660 4_4:-17212970 None:intergenic
CGAACATTGTACACAAATGC+TGG 0.511040 4_4:+17214288 Msa0672350:CDS
ACAATCAAAGAGAGAGCTCA+AGG 0.518793 4_4:+17214713 Msa0672350:three_prime_UTR
CTGCTATGCCTGAAATGTAA+AGG 0.521437 4_4:-17213888 None:intergenic
ACAATACCAAAATAAAATCA+AGG 0.524160 4_4:+17212494 Msa0672350:five_prime_UTR
GGAGATGTTCAAGCACATCT+TGG 0.525750 4_4:-17213846 None:intergenic
ATCAAAGCAGATGTTGAACT+AGG 0.529797 4_4:-17214634 None:intergenic
CCAACCCAATTACTTGTCCA+TGG 0.539516 4_4:-17214336 None:intergenic
GACGAACACACCGTGTTCAA+CGG 0.545339 4_4:-17214749 None:intergenic
GAGAGGGACAGGAGTGTGGT+AGG 0.565456 4_4:+17214784 Msa0672350:three_prime_UTR
ATCTATGAGAGGATTTAAAG+TGG 0.568996 4_4:-17212462 None:intergenic
CCATGGACAAGTAATTGGGT+TGG 0.581303 4_4:+17214336 Msa0672350:CDS
GACATAATTTCCAATTTGTG+GGG 0.585425 4_4:+17214219 Msa0672350:CDS
GTTATCTTAAAATCTATGAG+AGG 0.595864 4_4:-17212473 None:intergenic
GTGGATCTTTAGACACAAGT+TGG 0.596499 4_4:-17214314 None:intergenic
TGGTGTGTGAATATGGATGG+AGG 0.600815 4_4:+17212875 Msa0672350:CDS
GGTACTCTTGTGCTTCAGCA+GGG 0.601704 4_4:-17213867 None:intergenic
TATTTCAGTGTCATCAATCG+TGG 0.604840 4_4:+17214540 Msa0672350:three_prime_UTR
ATATAGGTATGCATGTTTGG+TGG 0.616848 4_4:+17213759 Msa0672350:intron
ACATGCTTATGAGAAATATG+GGG 0.619066 4_4:-17212637 None:intergenic
CAATCAAAGAGAGAGCTCAA+GGG 0.619765 4_4:+17214714 Msa0672350:three_prime_UTR
TCTATGAGAGGATTTAAAGT+GGG 0.627506 4_4:-17212461 None:intergenic
GAATGATCAAGATTCATCAA+AGG 0.633438 4_4:+17213786 Msa0672350:CDS
ACGAGAGAGGGACAGGAGTG+TGG 0.633519 4_4:+17214780 Msa0672350:three_prime_UTR
AGAAGGAAAAGACGATTGCA+AGG 0.649224 4_4:-17214605 None:intergenic
TGAGAGAGAACCGTTGAACA+CGG 0.659539 4_4:+17214739 Msa0672350:three_prime_UTR
CGTCAGCGATGTACGAGAGA+GGG 0.660720 4_4:+17214768 Msa0672350:three_prime_UTR
ACCCAATTACTTGTCCATGG+TGG 0.661718 4_4:-17214333 None:intergenic
TCGTCAGCGATGTACGAGAG+AGG 0.663828 4_4:+17214767 Msa0672350:three_prime_UTR
CAACAAATGTACCTATCAGG+AGG 0.675327 4_4:-17213572 None:intergenic
CATGCTTATGAGAAATATGG+GGG 0.677909 4_4:-17212636 None:intergenic
TTGTGTCTAAAGATCCACCA+TGG 0.708310 4_4:+17214319 Msa0672350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAATAATAATTATTTT+AGG - chr4_4:17213651-17213670 None:intergenic 0.0%
!!! TTAAAAATAATAATTATTTT+AGG - chr4_4:17213651-17213670 None:intergenic 0.0%
!!! GTCAAAATTTATTATTTTAA+AGG - chr4_4:17213437-17213456 None:intergenic 10.0%
!!! ATATTCAAGTATTTTTAAAT+AGG + chr4_4:17213963-17213982 Msa0672350:intron 10.0%
!! AATTAATATTCTACTTAATT+AGG - chr4_4:17214405-17214424 None:intergenic 10.0%
!!! GTCAAAATTTATTATTTTAA+AGG - chr4_4:17213437-17213456 None:intergenic 10.0%
!!! ATATTCAAGTATTTTTAAAT+AGG + chr4_4:17213963-17213982 Msa0672350:intron 10.0%
!! AATTAATATTCTACTTAATT+AGG - chr4_4:17214405-17214424 None:intergenic 10.0%
!! CATTCATAAACTAAAAAAAA+TGG - chr4_4:17212596-17212615 None:intergenic 15.0%
!!! CATTTTTTTTAGTTTATGAA+TGG + chr4_4:17212594-17212613 Msa0672350:exon 15.0%
!! ATGTTATATGTTCAAATTTA+AGG + chr4_4:17212656-17212675 Msa0672350:CDS 15.0%
!! TATATTATATATGTGAAAGT+CGG - chr4_4:17213287-17213306 None:intergenic 15.0%
!! ATCATTTATCAATATGAAAT+TGG + chr4_4:17213622-17213641 Msa0672350:intron 15.0%
!! CATTCATAAACTAAAAAAAA+TGG - chr4_4:17212596-17212615 None:intergenic 15.0%
!!! CATTTTTTTTAGTTTATGAA+TGG + chr4_4:17212594-17212613 Msa0672350:exon 15.0%
!! ATGTTATATGTTCAAATTTA+AGG + chr4_4:17212656-17212675 Msa0672350:CDS 15.0%
!! TATATTATATATGTGAAAGT+CGG - chr4_4:17213287-17213306 None:intergenic 15.0%
!! ATCATTTATCAATATGAAAT+TGG + chr4_4:17213622-17213641 Msa0672350:intron 15.0%
!! ACAATACCAAAATAAAATCA+AGG + chr4_4:17212494-17212513 Msa0672350:five_prime_UTR 20.0%
!!! TACAATTGGTATTTGATTTT+AGG - chr4_4:17212520-17212539 None:intergenic 20.0%
!! AGTTAACATTAACAAACTAT+AGG + chr4_4:17212547-17212566 Msa0672350:five_prime_UTR 20.0%
!! CTAAAAAAAATGGTAACTTT+AGG - chr4_4:17212586-17212605 None:intergenic 20.0%
!!! ATTCTATAACATGCATTTTT+TGG - chr4_4:17212703-17212722 None:intergenic 20.0%
!! TAAGAAGAAAAAGAAAAACT+TGG + chr4_4:17212722-17212741 Msa0672350:CDS 20.0%
!! TTTGTTCTTTCAATTCTTTA+AGG + chr4_4:17212990-17213009 Msa0672350:CDS 20.0%
!!! AGTTACAAGATTTTGAAATA+TGG + chr4_4:17213106-17213125 Msa0672350:intron 20.0%
!! TGTATATCATGCTATTATAT+AGG + chr4_4:17213743-17213762 Msa0672350:intron 20.0%
!! TTCAGACAAAATATTAGAAA+TGG + chr4_4:17214430-17214449 Msa0672350:three_prime_UTR 20.0%
!! ACAATACCAAAATAAAATCA+AGG + chr4_4:17212494-17212513 Msa0672350:five_prime_UTR 20.0%
!!! TACAATTGGTATTTGATTTT+AGG - chr4_4:17212520-17212539 None:intergenic 20.0%
!! AGTTAACATTAACAAACTAT+AGG + chr4_4:17212547-17212566 Msa0672350:five_prime_UTR 20.0%
!! CTAAAAAAAATGGTAACTTT+AGG - chr4_4:17212586-17212605 None:intergenic 20.0%
!!! ATTCTATAACATGCATTTTT+TGG - chr4_4:17212703-17212722 None:intergenic 20.0%
!! TAAGAAGAAAAAGAAAAACT+TGG + chr4_4:17212722-17212741 Msa0672350:CDS 20.0%
!! TTTGTTCTTTCAATTCTTTA+AGG + chr4_4:17212990-17213009 Msa0672350:CDS 20.0%
!!! AGTTACAAGATTTTGAAATA+TGG + chr4_4:17213106-17213125 Msa0672350:intron 20.0%
!! TGTATATCATGCTATTATAT+AGG + chr4_4:17213743-17213762 Msa0672350:intron 20.0%
!! TTCAGACAAAATATTAGAAA+TGG + chr4_4:17214430-17214449 Msa0672350:three_prime_UTR 20.0%
! GTTATCTTAAAATCTATGAG+AGG - chr4_4:17212476-17212495 None:intergenic 25.0%
!!! TTTAGGCCTTGATTTTATTT+TGG - chr4_4:17212503-17212522 None:intergenic 25.0%
! AACATGCTTATGAGAAATAT+GGG - chr4_4:17212641-17212660 None:intergenic 25.0%
! TAACATGCTTATGAGAAATA+TGG - chr4_4:17212642-17212661 None:intergenic 25.0%
! TGAAAATATGAAGCAAAAGT+TGG + chr4_4:17212846-17212865 Msa0672350:CDS 25.0%
!!! TACAAGATTTTGAAATATGG+TGG + chr4_4:17213109-17213128 Msa0672350:intron 25.0%
! TTCTCTACTTATTGTCTTAA+AGG - chr4_4:17213249-17213268 None:intergenic 25.0%
! AAGACAATAAGTAGAGAATT+TGG + chr4_4:17213251-17213270 Msa0672350:intron 25.0%
! AACTAAAGGCAAATAAAATG+TGG - chr4_4:17213473-17213492 None:intergenic 25.0%
!!! ACATTTTATTTGCCTTTAGT+TGG + chr4_4:17213472-17213491 Msa0672350:intron 25.0%
! AACATTAAACAACCAACTAA+AGG - chr4_4:17213487-17213506 None:intergenic 25.0%
! CAATTTATTATCTCATGCTA+AGG - chr4_4:17213697-17213716 None:intergenic 25.0%
! ATTATATAGGTATGCATGTT+TGG + chr4_4:17213756-17213775 Msa0672350:intron 25.0%
! TGACATAATTTCCAATTTGT+GGG + chr4_4:17214218-17214237 Msa0672350:CDS 25.0%
! GTTATCTTAAAATCTATGAG+AGG - chr4_4:17212476-17212495 None:intergenic 25.0%
!!! TTTAGGCCTTGATTTTATTT+TGG - chr4_4:17212503-17212522 None:intergenic 25.0%
! AACATGCTTATGAGAAATAT+GGG - chr4_4:17212641-17212660 None:intergenic 25.0%
! TAACATGCTTATGAGAAATA+TGG - chr4_4:17212642-17212661 None:intergenic 25.0%
! TGAAAATATGAAGCAAAAGT+TGG + chr4_4:17212846-17212865 Msa0672350:CDS 25.0%
!!! TACAAGATTTTGAAATATGG+TGG + chr4_4:17213109-17213128 Msa0672350:intron 25.0%
! TTCTCTACTTATTGTCTTAA+AGG - chr4_4:17213249-17213268 None:intergenic 25.0%
! AAGACAATAAGTAGAGAATT+TGG + chr4_4:17213251-17213270 Msa0672350:intron 25.0%
! AACTAAAGGCAAATAAAATG+TGG - chr4_4:17213473-17213492 None:intergenic 25.0%
!!! ACATTTTATTTGCCTTTAGT+TGG + chr4_4:17213472-17213491 Msa0672350:intron 25.0%
! AACATTAAACAACCAACTAA+AGG - chr4_4:17213487-17213506 None:intergenic 25.0%
! CAATTTATTATCTCATGCTA+AGG - chr4_4:17213697-17213716 None:intergenic 25.0%
! ATTATATAGGTATGCATGTT+TGG + chr4_4:17213756-17213775 Msa0672350:intron 25.0%
! TGACATAATTTCCAATTTGT+GGG + chr4_4:17214218-17214237 Msa0672350:CDS 25.0%
! TCTATGAGAGGATTTAAAGT+GGG - chr4_4:17212464-17212483 None:intergenic 30.0%
ATCTATGAGAGGATTTAAAG+TGG - chr4_4:17212465-17212484 None:intergenic 30.0%
GTTAACTCAGTTTCTACAAT+TGG - chr4_4:17212534-17212553 None:intergenic 30.0%
ACATGCTTATGAGAAATATG+GGG - chr4_4:17212640-17212659 None:intergenic 30.0%
AGAAAAAGAAAAACTTGGAG+TGG + chr4_4:17212727-17212746 Msa0672350:CDS 30.0%
!!! GAAGCAAAAGTTGGATTTTT+TGG + chr4_4:17212855-17212874 Msa0672350:CDS 30.0%
!!! GATTTTTTGGTGTGTGAATA+TGG + chr4_4:17212868-17212887 Msa0672350:CDS 30.0%
GAATGCAGATGAGATAAAAA+TGG + chr4_4:17212915-17212934 Msa0672350:CDS 30.0%
AAATCATTGAAAAGAGCTAC+AGG - chr4_4:17212973-17212992 None:intergenic 30.0%
TTTGATCCAAACTCTCTTTA+TGG + chr4_4:17213151-17213170 Msa0672350:intron 30.0%
ATTTCACCATAAAGAGAGTT+TGG - chr4_4:17213160-17213179 None:intergenic 30.0%
GAAATTGCTTCTCAAATTGT+AGG + chr4_4:17213175-17213194 Msa0672350:intron 30.0%
TTCTAACCACTACACAATTT+GGG - chr4_4:17213221-17213240 None:intergenic 30.0%
ATTCTAACCACTACACAATT+TGG - chr4_4:17213222-17213241 None:intergenic 30.0%
! TAAGTAGAGAATTTGGAGTT+CGG + chr4_4:17213258-17213277 Msa0672350:intron 30.0%
AAAGGCAAATAAAATGTGGT+AGG - chr4_4:17213469-17213488 None:intergenic 30.0%
TATTCATTCTTGACCCAAAT+AGG + chr4_4:17213508-17213527 Msa0672350:intron 30.0%
TAACAACAAATGTACCTATC+AGG - chr4_4:17213578-17213597 None:intergenic 30.0%
GAATGATCAAGATTCATCAA+AGG + chr4_4:17213786-17213805 Msa0672350:CDS 30.0%
!! TTTTAATCACCTGAAAGCAT+TGG - chr4_4:17213917-17213936 None:intergenic 30.0%
! GTTTTCTTTTTGTGTGTTCA+GGG - chr4_4:17214018-17214037 None:intergenic 30.0%
! AGTTTTCTTTTTGTGTGTTC+AGG - chr4_4:17214019-17214038 None:intergenic 30.0%
ACGTTAATGAGACTAATTGA+TGG + chr4_4:17214154-17214173 Msa0672350:intron 30.0%
GTGACATAATTTCCAATTTG+TGG + chr4_4:17214217-17214236 Msa0672350:CDS 30.0%
GACATAATTTCCAATTTGTG+GGG + chr4_4:17214219-17214238 Msa0672350:CDS 30.0%
AATCTTCTTCATAAGCTCTT+AGG - chr4_4:17214260-17214279 None:intergenic 30.0%
AAGAGCTTATGAAGAAGATT+TGG + chr4_4:17214260-17214279 Msa0672350:CDS 30.0%
AGAGCTTATGAAGAAGATTT+GGG + chr4_4:17214261-17214280 Msa0672350:CDS 30.0%
TGATGACACTGAAATAGTAT+TGG - chr4_4:17214536-17214555 None:intergenic 30.0%
TTTGATTGATCTACTGCATA+AGG + chr4_4:17214651-17214670 Msa0672350:three_prime_UTR 30.0%
! TCTATGAGAGGATTTAAAGT+GGG - chr4_4:17212464-17212483 None:intergenic 30.0%
ATCTATGAGAGGATTTAAAG+TGG - chr4_4:17212465-17212484 None:intergenic 30.0%
GTTAACTCAGTTTCTACAAT+TGG - chr4_4:17212534-17212553 None:intergenic 30.0%
ACATGCTTATGAGAAATATG+GGG - chr4_4:17212640-17212659 None:intergenic 30.0%
AGAAAAAGAAAAACTTGGAG+TGG + chr4_4:17212727-17212746 Msa0672350:CDS 30.0%
!!! GAAGCAAAAGTTGGATTTTT+TGG + chr4_4:17212855-17212874 Msa0672350:CDS 30.0%
!!! GATTTTTTGGTGTGTGAATA+TGG + chr4_4:17212868-17212887 Msa0672350:CDS 30.0%
GAATGCAGATGAGATAAAAA+TGG + chr4_4:17212915-17212934 Msa0672350:CDS 30.0%
AAATCATTGAAAAGAGCTAC+AGG - chr4_4:17212973-17212992 None:intergenic 30.0%
TTTGATCCAAACTCTCTTTA+TGG + chr4_4:17213151-17213170 Msa0672350:intron 30.0%
ATTTCACCATAAAGAGAGTT+TGG - chr4_4:17213160-17213179 None:intergenic 30.0%
GAAATTGCTTCTCAAATTGT+AGG + chr4_4:17213175-17213194 Msa0672350:intron 30.0%
TTCTAACCACTACACAATTT+GGG - chr4_4:17213221-17213240 None:intergenic 30.0%
ATTCTAACCACTACACAATT+TGG - chr4_4:17213222-17213241 None:intergenic 30.0%
! TAAGTAGAGAATTTGGAGTT+CGG + chr4_4:17213258-17213277 Msa0672350:intron 30.0%
AAAGGCAAATAAAATGTGGT+AGG - chr4_4:17213469-17213488 None:intergenic 30.0%
TATTCATTCTTGACCCAAAT+AGG + chr4_4:17213508-17213527 Msa0672350:intron 30.0%
TAACAACAAATGTACCTATC+AGG - chr4_4:17213578-17213597 None:intergenic 30.0%
GAATGATCAAGATTCATCAA+AGG + chr4_4:17213786-17213805 Msa0672350:CDS 30.0%
!! TTTTAATCACCTGAAAGCAT+TGG - chr4_4:17213917-17213936 None:intergenic 30.0%
! GTTTTCTTTTTGTGTGTTCA+GGG - chr4_4:17214018-17214037 None:intergenic 30.0%
! AGTTTTCTTTTTGTGTGTTC+AGG - chr4_4:17214019-17214038 None:intergenic 30.0%
ACGTTAATGAGACTAATTGA+TGG + chr4_4:17214154-17214173 Msa0672350:intron 30.0%
GTGACATAATTTCCAATTTG+TGG + chr4_4:17214217-17214236 Msa0672350:CDS 30.0%
GACATAATTTCCAATTTGTG+GGG + chr4_4:17214219-17214238 Msa0672350:CDS 30.0%
AATCTTCTTCATAAGCTCTT+AGG - chr4_4:17214260-17214279 None:intergenic 30.0%
AAGAGCTTATGAAGAAGATT+TGG + chr4_4:17214260-17214279 Msa0672350:CDS 30.0%
AGAGCTTATGAAGAAGATTT+GGG + chr4_4:17214261-17214280 Msa0672350:CDS 30.0%
TGATGACACTGAAATAGTAT+TGG - chr4_4:17214536-17214555 None:intergenic 30.0%
TTTGATTGATCTACTGCATA+AGG + chr4_4:17214651-17214670 Msa0672350:three_prime_UTR 30.0%
CATGCTTATGAGAAATATGG+GGG - chr4_4:17212639-17212658 None:intergenic 35.0%
!! TTTTGGTGTGTGAATATGGA+TGG + chr4_4:17212872-17212891 Msa0672350:CDS 35.0%
TTGCTTCTCAAATTGTAGGA+TGG + chr4_4:17213179-17213198 Msa0672350:intron 35.0%
! TCTTTTCCCAAATTGTGTAG+TGG + chr4_4:17213212-17213231 Msa0672350:intron 35.0%
CTGAACATAGCTCAGTTAAT+AGG - chr4_4:17213314-17213333 None:intergenic 35.0%
AAAATGTGGTAGGTGCTTAA+TGG - chr4_4:17213459-17213478 None:intergenic 35.0%
TTAAATACTCACCTCCTGAT+AGG + chr4_4:17213561-17213580 Msa0672350:CDS 35.0%
ATATAGGTATGCATGTTTGG+TGG + chr4_4:17213759-17213778 Msa0672350:intron 35.0%
GATTCATCAAAGGAACTTGT+AGG + chr4_4:17213796-17213815 Msa0672350:CDS 35.0%
!! CAAGAGTACCTTTACATTTC+AGG + chr4_4:17213880-17213899 Msa0672350:CDS 35.0%
AAACTCATTACCCCACAAAT+TGG - chr4_4:17214232-17214251 None:intergenic 35.0%
TATTTCAGTGTCATCAATCG+TGG + chr4_4:17214540-17214559 Msa0672350:three_prime_UTR 35.0%
ATCAAAGCAGATGTTGAACT+AGG - chr4_4:17214637-17214656 None:intergenic 35.0%
CATGCTTATGAGAAATATGG+GGG - chr4_4:17212639-17212658 None:intergenic 35.0%
!! TTTTGGTGTGTGAATATGGA+TGG + chr4_4:17212872-17212891 Msa0672350:CDS 35.0%
TTGCTTCTCAAATTGTAGGA+TGG + chr4_4:17213179-17213198 Msa0672350:intron 35.0%
! TCTTTTCCCAAATTGTGTAG+TGG + chr4_4:17213212-17213231 Msa0672350:intron 35.0%
CTGAACATAGCTCAGTTAAT+AGG - chr4_4:17213314-17213333 None:intergenic 35.0%
AAAATGTGGTAGGTGCTTAA+TGG - chr4_4:17213459-17213478 None:intergenic 35.0%
TTAAATACTCACCTCCTGAT+AGG + chr4_4:17213561-17213580 Msa0672350:CDS 35.0%
ATATAGGTATGCATGTTTGG+TGG + chr4_4:17213759-17213778 Msa0672350:intron 35.0%
GATTCATCAAAGGAACTTGT+AGG + chr4_4:17213796-17213815 Msa0672350:CDS 35.0%
!! CAAGAGTACCTTTACATTTC+AGG + chr4_4:17213880-17213899 Msa0672350:CDS 35.0%
AAACTCATTACCCCACAAAT+TGG - chr4_4:17214232-17214251 None:intergenic 35.0%
TATTTCAGTGTCATCAATCG+TGG + chr4_4:17214540-17214559 Msa0672350:three_prime_UTR 35.0%
ATCAAAGCAGATGTTGAACT+AGG - chr4_4:17214637-17214656 None:intergenic 35.0%
TGCTGATCAGAAAGTGATGT+TGG + chr4_4:17212807-17212826 Msa0672350:CDS 40.0%
GTGAATATGGATGGAGGATA+AGG + chr4_4:17212881-17212900 Msa0672350:CDS 40.0%
!! GAAAGCACTTCAGCCTATTT+GGG - chr4_4:17213524-17213543 None:intergenic 40.0%
!! TGAAAGCACTTCAGCCTATT+TGG - chr4_4:17213525-17213544 None:intergenic 40.0%
! AAATAGGCTGAAGTGCTTTC+AGG + chr4_4:17213524-17213543 Msa0672350:intron 40.0%
CAACAAATGTACCTATCAGG+AGG - chr4_4:17213575-17213594 None:intergenic 40.0%
CTGCTATGCCTGAAATGTAA+AGG - chr4_4:17213891-17213910 None:intergenic 40.0%
TAGCAGTATCCAATGCTTTC+AGG + chr4_4:17213905-17213924 Msa0672350:CDS 40.0%
TCGCTAACATTAGCAACTAG+TGG + chr4_4:17214081-17214100 Msa0672350:intron 40.0%
! ATGAGACTAATTGATGGCAC+AGG + chr4_4:17214160-17214179 Msa0672350:intron 40.0%
CGAACATTGTACACAAATGC+TGG + chr4_4:17214288-17214307 Msa0672350:CDS 40.0%
GTGGATCTTTAGACACAAGT+TGG - chr4_4:17214317-17214336 None:intergenic 40.0%
TTGTGTCTAAAGATCCACCA+TGG + chr4_4:17214319-17214338 Msa0672350:CDS 40.0%
ATCCACCATGGACAAGTAAT+TGG + chr4_4:17214331-17214350 Msa0672350:CDS 40.0%
TCCACCATGGACAAGTAATT+GGG + chr4_4:17214332-17214351 Msa0672350:CDS 40.0%
AGAAGGAAAAGACGATTGCA+AGG - chr4_4:17214608-17214627 None:intergenic 40.0%
! GTTGAACTAGGTTTTGCAGA+AGG - chr4_4:17214625-17214644 None:intergenic 40.0%
ACAATCAAAGAGAGAGCTCA+AGG + chr4_4:17214713-17214732 Msa0672350:three_prime_UTR 40.0%
CAATCAAAGAGAGAGCTCAA+GGG + chr4_4:17214714-17214733 Msa0672350:three_prime_UTR 40.0%
TGCTGATCAGAAAGTGATGT+TGG + chr4_4:17212807-17212826 Msa0672350:CDS 40.0%
GTGAATATGGATGGAGGATA+AGG + chr4_4:17212881-17212900 Msa0672350:CDS 40.0%
!! GAAAGCACTTCAGCCTATTT+GGG - chr4_4:17213524-17213543 None:intergenic 40.0%
!! TGAAAGCACTTCAGCCTATT+TGG - chr4_4:17213525-17213544 None:intergenic 40.0%
! AAATAGGCTGAAGTGCTTTC+AGG + chr4_4:17213524-17213543 Msa0672350:intron 40.0%
CAACAAATGTACCTATCAGG+AGG - chr4_4:17213575-17213594 None:intergenic 40.0%
CTGCTATGCCTGAAATGTAA+AGG - chr4_4:17213891-17213910 None:intergenic 40.0%
TAGCAGTATCCAATGCTTTC+AGG + chr4_4:17213905-17213924 Msa0672350:CDS 40.0%
TCGCTAACATTAGCAACTAG+TGG + chr4_4:17214081-17214100 Msa0672350:intron 40.0%
! ATGAGACTAATTGATGGCAC+AGG + chr4_4:17214160-17214179 Msa0672350:intron 40.0%
CGAACATTGTACACAAATGC+TGG + chr4_4:17214288-17214307 Msa0672350:CDS 40.0%
GTGGATCTTTAGACACAAGT+TGG - chr4_4:17214317-17214336 None:intergenic 40.0%
TTGTGTCTAAAGATCCACCA+TGG + chr4_4:17214319-17214338 Msa0672350:CDS 40.0%
ATCCACCATGGACAAGTAAT+TGG + chr4_4:17214331-17214350 Msa0672350:CDS 40.0%
TCCACCATGGACAAGTAATT+GGG + chr4_4:17214332-17214351 Msa0672350:CDS 40.0%
AGAAGGAAAAGACGATTGCA+AGG - chr4_4:17214608-17214627 None:intergenic 40.0%
! GTTGAACTAGGTTTTGCAGA+AGG - chr4_4:17214625-17214644 None:intergenic 40.0%
ACAATCAAAGAGAGAGCTCA+AGG + chr4_4:17214713-17214732 Msa0672350:three_prime_UTR 40.0%
CAATCAAAGAGAGAGCTCAA+GGG + chr4_4:17214714-17214733 Msa0672350:three_prime_UTR 40.0%
TGGTGTGTGAATATGGATGG+AGG + chr4_4:17212875-17212894 Msa0672350:CDS 45.0%
GGAGATGTTCAAGCACATCT+TGG - chr4_4:17213849-17213868 None:intergenic 45.0%
! AGACTAATTGATGGCACAGG+AGG + chr4_4:17214163-17214182 Msa0672350:intron 45.0%
ACCCAATTACTTGTCCATGG+TGG - chr4_4:17214336-17214355 None:intergenic 45.0%
CCAACCCAATTACTTGTCCA+TGG - chr4_4:17214339-17214358 None:intergenic 45.0%
CCATGGACAAGTAATTGGGT+TGG + chr4_4:17214336-17214355 Msa0672350:CDS 45.0%
TGAGAGAGAACCGTTGAACA+CGG + chr4_4:17214739-17214758 Msa0672350:three_prime_UTR 45.0%
TGGTGTGTGAATATGGATGG+AGG + chr4_4:17212875-17212894 Msa0672350:CDS 45.0%
GGAGATGTTCAAGCACATCT+TGG - chr4_4:17213849-17213868 None:intergenic 45.0%
! AGACTAATTGATGGCACAGG+AGG + chr4_4:17214163-17214182 Msa0672350:intron 45.0%
ACCCAATTACTTGTCCATGG+TGG - chr4_4:17214336-17214355 None:intergenic 45.0%
CCAACCCAATTACTTGTCCA+TGG - chr4_4:17214339-17214358 None:intergenic 45.0%
CCATGGACAAGTAATTGGGT+TGG + chr4_4:17214336-17214355 Msa0672350:CDS 45.0%
TGAGAGAGAACCGTTGAACA+CGG + chr4_4:17214739-17214758 Msa0672350:three_prime_UTR 45.0%
GGTACTCTTGTGCTTCAGCA+GGG - chr4_4:17213870-17213889 None:intergenic 50.0%
AGGTACTCTTGTGCTTCAGC+AGG - chr4_4:17213871-17213890 None:intergenic 50.0%
! CTAATTGATGGCACAGGAGG+AGG + chr4_4:17214166-17214185 Msa0672350:intron 50.0%
GACGAACACACCGTGTTCAA+CGG - chr4_4:17214752-17214771 None:intergenic 50.0%
GGTACTCTTGTGCTTCAGCA+GGG - chr4_4:17213870-17213889 None:intergenic 50.0%
AGGTACTCTTGTGCTTCAGC+AGG - chr4_4:17213871-17213890 None:intergenic 50.0%
! CTAATTGATGGCACAGGAGG+AGG + chr4_4:17214166-17214185 Msa0672350:intron 50.0%
GACGAACACACCGTGTTCAA+CGG - chr4_4:17214752-17214771 None:intergenic 50.0%
TCGTCAGCGATGTACGAGAG+AGG + chr4_4:17214767-17214786 Msa0672350:three_prime_UTR 55.0%
CGTCAGCGATGTACGAGAGA+GGG + chr4_4:17214768-17214787 Msa0672350:three_prime_UTR 55.0%
TCGTCAGCGATGTACGAGAG+AGG + chr4_4:17214767-17214786 Msa0672350:three_prime_UTR 55.0%
CGTCAGCGATGTACGAGAGA+GGG + chr4_4:17214768-17214787 Msa0672350:three_prime_UTR 55.0%
GCGATGTACGAGAGAGGGAC+AGG + chr4_4:17214773-17214792 Msa0672350:three_prime_UTR 60.0%
ACGAGAGAGGGACAGGAGTG+TGG + chr4_4:17214780-17214799 Msa0672350:three_prime_UTR 60.0%
! GAGAGGGACAGGAGTGTGGT+AGG + chr4_4:17214784-17214803 Msa0672350:three_prime_UTR 60.0%
GCGATGTACGAGAGAGGGAC+AGG + chr4_4:17214773-17214792 Msa0672350:three_prime_UTR 60.0%
ACGAGAGAGGGACAGGAGTG+TGG + chr4_4:17214780-17214799 Msa0672350:three_prime_UTR 60.0%
! GAGAGGGACAGGAGTGTGGT+AGG + chr4_4:17214784-17214803 Msa0672350:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 17212459 17214826 17212459 ID=Msa0672350;Name=Msa0672350
chr4_4 mRNA 17212459 17214826 17212459 ID=Msa0672350-mRNA-1;Parent=Msa0672350;Name=Msa0672350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=154|1|1|1|1|1|4|416|280
chr4_4 exon 17212459 17213011 17212459 ID=Msa0672350-mRNA-1:exon:4998;Parent=Msa0672350-mRNA-1
chr4_4 exon 17213530 17213582 17213530 ID=Msa0672350-mRNA-1:exon:4999;Parent=Msa0672350-mRNA-1
chr4_4 exon 17213765 17213926 17213765 ID=Msa0672350-mRNA-1:exon:5000;Parent=Msa0672350-mRNA-1
chr4_4 exon 17214182 17214826 17214182 ID=Msa0672350-mRNA-1:exon:5001;Parent=Msa0672350-mRNA-1
chr4_4 five_prime_UTR 17212459 17212612 17212459 ID=Msa0672350-mRNA-1:five_prime_utr;Parent=Msa0672350-mRNA-1
chr4_4 CDS 17212613 17213011 17212613 ID=Msa0672350-mRNA-1:cds;Parent=Msa0672350-mRNA-1
chr4_4 CDS 17213530 17213582 17213530 ID=Msa0672350-mRNA-1:cds;Parent=Msa0672350-mRNA-1
chr4_4 CDS 17213765 17213926 17213765 ID=Msa0672350-mRNA-1:cds;Parent=Msa0672350-mRNA-1
chr4_4 CDS 17214182 17214410 17214182 ID=Msa0672350-mRNA-1:cds;Parent=Msa0672350-mRNA-1
chr4_4 three_prime_UTR 17214411 17214826 17214411 ID=Msa0672350-mRNA-1:three_prime_utr;Parent=Msa0672350-mRNA-1
Gene Sequence

>Msa0672350

ATGGCACATTTATTTTCAAGCAACCCCCATATTTCTCATAAGCATGTTATATGTTCAAATTTAAGGTATTATGATGTTATAACAACACCAAAAAATGCATGTTATAGAATAAGAAGAAAAAGAAAAACTTGGAGTGGTTCAAAGTTGCAATGCAGTAGAAGCAATAGTACAAGTAGTTCAGAACAATTATATTTTGCTGATCAGAAAGTGATGTTGGAAATTGAGAATGATAGTGAAAATATGAAGCAAAAGTTGGATTTTTTGGTGTGTGAATATGGATGGAGGATAAGGAGATTAATTGAGAATGCAGATGAGATAAAAATGGCTGCTCAAGTTCAAGCTGAAGCTTTTCATGATCCTGTAGCTCTTTTCAATGATTTGTTCTTTCAATTCTTTAAGGCTGAAGTGCTTTCAGGACTGCTTTACAAGCTTAAATACTCACCTCCTGATAGGTATGCATGTTTGGTGGCTGAGAATGATCAAGATTCATCAAAGGAACTTGTAGGTGTTATAGATGTTACTGTAATGAGAGACCAAGATGTGCTTGAACATCTCCCTGCTGAAGCACAAGAGTACCTTTACATTTCAGGCATAGCAGTATCCAATGCTTTCAGGAGGAGGAAAATAGCAACTGTTATGTTGAAAGCATGTGACATAATTTCCAATTTGTGGGGTAATGAGTTTCTTGTCCTAAGAGCTTATGAAGAAGATTTGGGTGCTCGAACATTGTACACAAATGCTGGCTACCAACTTGTGTCTAAAGATCCACCATGGACAAGTAATTGGGTTGGAAGAAAATGTCGTGTTCTTATGATCAAAAGAATTAGTTTATTGCCTAATTAA

Protein sequence

>Msa0672350

MAHLFSSNPHISHKHVICSNLRYYDVITTPKNACYRIRRKRKTWSGSKLQCSRSNSTSSSEQLYFADQKVMLEIENDSENMKQKLDFLVCEYGWRIRRLIENADEIKMAAQVQAEAFHDPVALFNDLFFQFFKAEVLSGLLYKLKYSPPDRYACLVAENDQDSSKELVGVIDVTVMRDQDVLEHLPAEAQEYLYISGIAVSNAFRRRKIATVMLKACDIISNLWGNEFLVLRAYEEDLGARTLYTNAGYQLVSKDPPWTSNWVGRKCRVLMIKRISLLPN*