AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372250 MtrunA17_Chr3g0120521 88.764 267 30 0 1 267 506 772 2.53e-172 494
Msa0372250 MtrunA17_Chr7g0261701 56.343 268 112 3 1 267 29 292 9.87e-112 323
Msa0372250 MtrunA17_Chr4g0076611 57.090 268 110 3 1 267 433 696 2.26e-109 331
Msa0372250 MtrunA17_Chr4g0057491 53.731 268 121 2 1 265 355 622 2.73e-102 310
Msa0372250 MtrunA17_Chr5g0423261 54.851 268 118 2 1 265 355 622 1.77e-101 308
Msa0372250 MtrunA17_Chr4g0057511 53.731 268 121 2 1 265 349 616 1.36e-99 303
Msa0372250 MtrunA17_Chr4g0057481 54.478 268 119 2 1 265 423 690 4.20e-99 304
Msa0372250 MtrunA17_Chr4g0057531 53.358 268 122 2 1 265 510 777 5.33e-98 303
Msa0372250 MtrunA17_Chr4g0057471 52.434 267 124 2 1 264 442 708 1.75e-96 298
Msa0372250 MtrunA17_Chr4g0057461 52.490 261 121 2 1 258 361 621 4.22e-95 292
Msa0372250 MtrunA17_Chr5g0439271 54.104 268 116 2 1 264 337 601 3.70e-94 289
Msa0372250 MtrunA17_Chr7g0250371 53.160 269 121 5 1 265 518 785 8.95e-89 279
Msa0372250 MtrunA17_Chr7g0250481 53.532 269 120 5 1 265 531 798 1.82e-87 276
Msa0372250 MtrunA17_Chr5g0447171 45.981 311 113 4 1 265 207 508 2.49e-87 268
Msa0372250 MtrunA17_Chr7g0250411 52.788 269 122 5 1 265 517 784 7.12e-85 269
Msa0372250 MtrunA17_Chr7g0250441 50.186 269 129 5 1 265 16 283 7.59e-85 256
Msa0372250 MtrunA17_Chr7g0250331 51.111 270 126 5 1 265 539 807 4.94e-82 262
Msa0372250 MtrunA17_Chr7g0250391 52.416 269 123 5 1 265 516 783 7.74e-81 258
Msa0372250 MtrunA17_Chr5g0401511 45.756 271 138 5 1 263 490 759 4.58e-74 240
Msa0372250 MtrunA17_Chr7g0246461 44.322 273 143 5 1 264 467 739 5.54e-74 239
Msa0372250 MtrunA17_Chr8g0344331 46.931 277 132 7 1 265 502 775 7.83e-73 237
Msa0372250 MtrunA17_Chr2g0300751 48.148 270 131 7 1 262 502 770 1.48e-72 236
Msa0372250 MtrunA17_Chr4g0020651 44.815 270 140 6 1 262 486 754 2.43e-72 235
Msa0372250 MtrunA17_Chr5g0407701 47.566 267 127 5 2 265 494 750 1.63e-71 233
Msa0372250 MtrunA17_Chr3g0134621 44.043 277 140 5 1 263 459 734 1.92e-70 230
Msa0372250 MtrunA17_Chr4g0037221 45.000 280 140 7 1 267 492 770 1.45e-69 228
Msa0372250 MtrunA17_Chr8g0369891 45.896 268 130 6 1 265 498 753 1.49e-69 228
Msa0372250 MtrunA17_Chr4g0053781 42.647 272 147 6 1 264 484 754 1.32e-68 225
Msa0372250 MtrunA17_Chr8g0344971 42.545 275 145 5 3 264 485 759 2.07e-68 225
Msa0372250 MtrunA17_Chr8g0377961 44.280 271 139 6 1 267 515 777 4.31e-68 224
Msa0372250 MtrunA17_Chr4g0070391 45.556 270 138 7 1 262 481 749 2.38e-67 222
Msa0372250 MtrunA17_Chr1g0152771 43.772 281 137 6 1 262 482 760 1.17e-66 220
Msa0372250 MtrunA17_Chr4g0026641 43.123 269 147 5 2 267 491 756 1.93e-66 219
Msa0372250 MtrunA17_Chr1g0204321 43.590 273 142 7 1 264 507 776 1.10e-64 215
Msa0372250 MtrunA17_Chr7g0262161 43.321 277 143 6 1 264 485 760 1.17e-64 215
Msa0372250 MtrunA17_Chr4g0026661 40.945 254 144 5 17 267 12 262 1.04e-63 200
Msa0372250 MtrunA17_Chr8g0346361 40.146 274 149 6 1 267 234 499 2.68e-63 206
Msa0372250 MtrunA17_Chr1g0146271 40.000 270 148 6 4 267 474 735 7.21e-62 207
Msa0372250 MtrunA17_Chr8g0334521 39.785 279 143 8 1 267 471 736 1.66e-61 206
Msa0372250 MtrunA17_Chr4g0057061 44.776 268 139 6 1 264 512 774 2.00e-61 206
Msa0372250 MtrunA17_Chr1g0170081 39.852 271 147 7 4 267 472 733 2.27e-61 206
Msa0372250 MtrunA17_Chr1g0146251 40.370 270 147 6 4 267 476 737 2.60e-61 206
Msa0372250 MtrunA17_Chr2g0285121 42.804 271 144 5 1 264 516 782 2.74e-60 203
Msa0372250 MtrunA17_Chr5g0398241 44.737 266 135 4 4 264 495 753 2.80e-60 203
Msa0372250 MtrunA17_Chr1g0189251 42.086 278 140 8 4 267 486 756 3.94e-60 202
Msa0372250 MtrunA17_Chr2g0301031 41.313 259 134 8 17 267 1 249 4.89e-60 190
Msa0372250 MtrunA17_Chr2g0303881 43.369 279 136 9 3 267 458 728 5.65e-60 202
Msa0372250 MtrunA17_Chr7g0227991 39.130 276 145 7 1 265 471 734 7.67e-60 201
Msa0372250 MtrunA17_Chr6g0470851 39.350 277 148 9 1 267 466 732 9.65e-60 201
Msa0372250 MtrunA17_Chr3g0105451 40.146 274 140 6 1 264 19 278 1.68e-59 190
Msa0372250 MtrunA17_Chr6g0470881 40.146 274 144 9 4 267 469 732 1.88e-59 200
Msa0372250 MtrunA17_Chr5g0398401 44.361 266 136 4 4 264 495 753 3.80e-59 200
Msa0372250 MtrunA17_Chr8g0345991 41.516 277 140 9 3 264 484 753 8.03e-59 199
Msa0372250 MtrunA17_Chr8g0334491 41.455 275 130 9 4 267 476 730 1.09e-58 198
Msa0372250 MtrunA17_Chr3g0136151 40.511 274 151 6 1 264 490 761 1.68e-58 198
Msa0372250 MtrunA17_Chr5g0398351 42.857 266 140 4 4 264 1246 1504 3.83e-58 199
Msa0372250 MtrunA17_Chr5g0398351 43.233 266 139 4 4 264 475 733 1.61e-57 198
Msa0372250 MtrunA17_Chr3g0143251 40.217 276 152 6 2 267 495 767 1.17e-57 196
Msa0372250 MtrunA17_Chr2g0312861 39.300 257 142 6 17 267 1 249 3.79e-57 185
Msa0372250 MtrunA17_Chr8g0345971 41.667 276 139 9 4 264 490 758 4.27e-57 194
Msa0372250 MtrunA17_Chr8g0354741 39.114 271 155 5 1 265 368 634 1.37e-56 191
Msa0372250 MtrunA17_Chr2g0285111 40.590 271 150 5 1 264 519 785 1.45e-56 193
Msa0372250 MtrunA17_Chr8g0345981 41.304 276 142 8 3 264 488 757 7.93e-56 191
Msa0372250 MtrunA17_Chr1g0189561 43.011 279 138 11 2 264 487 760 1.08e-55 191
Msa0372250 MtrunA17_Chr6g0480721 37.500 272 150 7 1 264 340 599 7.02e-55 187
Msa0372250 MtrunA17_Chr5g0398311 41.264 269 146 4 1 264 485 746 1.12e-54 187
Msa0372250 MtrunA17_Chr8g0354771 37.868 272 160 5 1 265 495 764 1.54e-54 187
Msa0372250 MtrunA17_Chr7g0276151 40.727 275 150 6 4 267 486 758 2.46e-54 187
Msa0372250 MtrunA17_Chr5g0398331 40.892 269 147 4 1 264 489 750 2.85e-53 184
Msa0372250 MtrunA17_Chr3g0079971 36.765 272 153 8 5 267 473 734 4.20e-52 181
Msa0372250 MtrunA17_Chr7g0248871 41.455 275 145 11 2 264 493 763 8.85e-52 180
Msa0372250 MtrunA17_Chr3g0103081 56.944 144 59 2 124 265 1 143 3.29e-51 164
Msa0372250 MtrunA17_Chr7g0246451 35.018 277 152 5 2 264 483 745 4.54e-50 175
Msa0372250 MtrunA17_Chr8g0351011 36.996 273 153 7 1 264 489 751 5.92e-50 175
Msa0372250 MtrunA17_Chr8g0345961 38.931 262 147 6 13 264 498 756 9.33e-50 174
Msa0372250 MtrunA17_Chr4g0071871 37.809 283 152 9 1 267 542 816 3.52e-49 173
Msa0372250 MtrunA17_Chr7g0266051 37.363 273 153 5 1 264 442 705 3.23e-45 161
Msa0372250 MtrunA17_Chr2g0301921 41.395 215 108 8 58 264 1 205 5.80e-45 150
Msa0372250 MtrunA17_Chr2g0298601 36.786 280 149 10 1 262 542 811 1.05e-43 157
Msa0372250 MtrunA17_Chr2g0301011 44.737 152 77 1 1 152 335 479 1.34e-39 143
Msa0372250 MtrunA17_Chr8g0380961 34.050 279 157 10 4 264 576 845 2.07e-39 145
Msa0372250 MtrunA17_Chr4g0075331 32.342 269 159 9 4 258 471 730 1.95e-35 134
Msa0372250 MtrunA17_Chr2g0302951 31.690 284 158 10 4 264 568 838 9.08e-34 129
Msa0372250 MtrunA17_Chr4g0071191 35.678 199 108 7 4 193 63 250 1.81e-32 119
Msa0372250 MtrunA17_Chr5g0436031 35.152 165 97 4 107 264 19 180 1.60e-27 105
Msa0372250 MtrunA17_Chr3g0097061 39.200 125 69 1 39 163 321 438 4.10e-26 106
Msa0372250 MtrunA17_Chr7g0248861 46.094 128 66 3 2 126 495 622 3.11e-25 104
Msa0372250 MtrunA17_Chr8g0376841 51.613 93 45 0 1 93 493 585 4.67e-25 103
Msa0372250 MtrunA17_Chr5g0418921 43.548 124 58 3 3 119 18 136 6.81e-24 95.1
Msa0372250 MtrunA17_Chr8g0376851 34.568 162 97 5 111 264 11 171 3.57e-23 93.2
Msa0372250 MtrunA17_Chr5g0398341 50.515 97 48 0 58 154 1 97 1.08e-22 89.4
Msa0372250 MtrunA17_Chr4g0035881 47.312 93 45 1 1 89 225 317 8.15e-22 92.8
Msa0372250 MtrunA17_Chr3g0143231 47.191 89 46 1 1 89 2 89 8.51e-20 81.6
Msa0372250 MtrunA17_Chr3g0142961 37.500 136 74 5 99 223 4 139 4.06e-19 81.3
Msa0372250 MtrunA17_Chr7g0248851 38.926 149 80 6 124 264 1 146 5.96e-19 81.3
Msa0372250 MtrunA17_Chr3g0142971 42.353 85 48 1 1 85 2 85 2.46e-15 69.7
Msa0372250 MtrunA17_Chr3g0143221 30.508 177 96 6 98 264 3 162 1.00e-12 64.7
Msa0372250 MtrunA17_Chr3g0077671 46.575 73 33 3 48 116 236 306 1.18e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372250 AT2G04160.1 62.921 267 97 2 1 265 505 771 9.30e-112 339
Msa0372250 AT5G59810.1 57.895 266 110 2 1 265 511 775 2.26e-103 318
Msa0372250 AT5G67360.1 47.955 269 135 4 1 264 486 754 3.46e-81 259
Msa0372250 AT2G05920.1 47.778 270 131 7 1 262 480 747 7.45e-74 239
Msa0372250 AT4G34980.1 44.404 277 141 7 1 264 482 758 4.68e-69 227
Msa0372250 AT3G14240.1 43.321 277 144 5 1 264 493 769 7.10e-68 224
Msa0372250 AT3G14067.1 43.369 279 144 5 1 265 490 768 2.20e-66 220
Msa0372250 AT5G45650.2 43.015 272 142 4 1 264 522 788 2.50e-66 220
Msa0372250 AT5G45650.1 43.015 272 142 4 1 264 522 788 2.50e-66 220
Msa0372250 AT5G59090.3 45.652 276 126 9 1 264 463 726 1.21e-65 218
Msa0372250 AT5G59090.1 45.652 276 126 9 1 264 465 728 1.38e-65 217
Msa0372250 AT5G59090.2 45.652 276 121 9 1 264 465 723 3.55e-65 216
Msa0372250 AT1G01900.1 44.928 276 140 4 1 264 496 771 8.47e-65 216
Msa0372250 AT5G11940.1 45.387 271 134 6 1 265 491 753 1.48e-64 215
Msa0372250 AT5G59100.1 42.238 277 142 7 1 267 472 740 1.82e-64 214
Msa0372250 AT4G26330.2 42.857 273 146 6 1 264 450 721 2.65e-64 214
Msa0372250 AT4G26330.1 42.857 273 146 6 1 264 464 735 3.11e-64 214
Msa0372250 AT5G58840.1 43.542 271 139 6 1 264 443 706 8.39e-64 212
Msa0372250 AT4G10520.1 43.494 269 140 7 1 265 485 745 3.78e-63 211
Msa0372250 AT4G10540.1 46.097 269 133 7 1 265 504 764 1.32e-62 210
Msa0372250 AT5G58830.1 41.697 271 144 5 1 264 442 705 1.67e-62 209
Msa0372250 AT4G21650.1 45.926 270 133 8 1 265 500 761 3.58e-62 209
Msa0372250 AT4G21640.1 45.556 270 134 7 1 265 467 728 4.84e-62 208
Msa0372250 AT4G10550.4 45.353 269 134 7 1 265 452 711 8.46e-62 207
Msa0372250 AT4G10550.2 45.353 269 134 7 1 265 452 711 8.46e-62 207
Msa0372250 AT4G10550.1 45.353 269 134 7 1 265 508 767 1.51e-61 207
Msa0372250 AT4G10550.3 45.353 269 134 7 1 265 524 783 2.01e-61 207
Msa0372250 AT5G59120.1 44.203 276 130 9 1 264 464 727 2.62e-61 206
Msa0372250 AT1G04110.1 43.116 276 144 6 1 264 496 770 4.55e-61 206
Msa0372250 AT4G21630.1 44.815 270 136 7 1 265 493 754 1.30e-60 204
Msa0372250 AT1G20160.2 41.304 276 149 7 1 266 452 724 2.84e-60 203
Msa0372250 AT1G20160.1 41.304 276 149 7 1 266 491 763 4.66e-60 203
Msa0372250 AT5G59130.3 43.123 269 134 7 4 264 429 686 1.22e-59 201
Msa0372250 AT3G46840.1 42.491 273 141 7 1 266 473 736 1.60e-59 201
Msa0372250 AT5G59130.2 43.123 269 134 7 4 264 458 715 1.63e-59 201
Msa0372250 AT5G59130.1 43.123 269 134 7 4 264 464 721 1.72e-59 201
Msa0372250 AT5G59130.4 43.123 269 134 7 4 264 468 725 1.90e-59 201
Msa0372250 AT5G51750.1 40.659 273 151 6 1 264 504 774 3.09e-59 201
Msa0372250 AT5G58820.1 42.593 270 141 6 1 264 439 700 3.18e-59 200
Msa0372250 AT1G66220.1 40.977 266 138 5 4 265 495 745 3.24e-59 200
Msa0372250 AT3G46850.1 41.606 274 142 8 1 266 473 736 4.22e-59 200
Msa0372250 AT1G32970.1 43.123 269 141 7 1 265 463 723 7.71e-59 199
Msa0372250 AT4G10510.4 44.981 269 136 7 1 265 450 710 1.94e-58 198
Msa0372250 AT4G10510.2 44.981 269 136 7 1 265 435 695 2.00e-58 197
Msa0372250 AT1G66210.1 42.963 270 136 8 1 265 495 751 2.31e-58 198
Msa0372250 AT4G10510.3 44.981 269 136 7 1 265 506 766 4.44e-58 197
Msa0372250 AT4G10510.1 44.981 269 136 7 1 265 494 754 4.92e-58 197
Msa0372250 AT1G32960.1 42.857 266 140 6 4 265 509 766 2.61e-55 190
Msa0372250 AT1G32950.2 43.123 269 141 6 1 265 451 711 4.10e-55 189
Msa0372250 AT4G21326.1 42.857 266 140 6 4 265 431 688 4.28e-55 188
Msa0372250 AT1G32950.1 43.123 269 141 6 1 265 502 762 6.46e-55 189
Msa0372250 AT5G45640.1 40.385 260 137 6 19 267 502 754 7.14e-55 189
Msa0372250 AT1G32940.4 42.379 269 143 5 1 265 452 712 1.42e-53 185
Msa0372250 AT1G32940.2 42.379 269 143 5 1 265 452 712 1.42e-53 185
Msa0372250 AT5G03620.1 38.434 281 141 7 4 264 490 758 1.89e-53 185
Msa0372250 AT1G32940.1 42.379 269 143 5 1 265 503 763 2.25e-53 185
Msa0372250 AT4G10530.1 39.405 269 138 6 1 265 489 736 3.73e-53 184
Msa0372250 AT1G20150.1 38.545 275 153 6 4 264 498 770 1.44e-49 174
Msa0372250 AT5G59190.1 38.095 273 149 9 4 267 430 691 2.44e-49 173
Msa0372250 AT4G00230.1 36.996 273 154 7 1 264 480 743 2.90e-49 173
Msa0372250 AT4G15040.2 36.194 268 156 5 4 264 426 685 9.74e-48 168
Msa0372250 AT4G15040.1 36.194 268 156 5 4 264 426 685 9.74e-48 168
Msa0372250 AT4G21323.1 39.326 267 147 7 5 265 537 794 1.33e-47 169
Msa0372250 AT5G67090.1 39.231 260 134 6 1 253 473 715 5.81e-45 161
Msa0372250 AT1G32980.1 43.478 184 100 4 54 233 3 186 2.63e-44 148
Msa0372250 AT4G30020.3 38.163 283 144 12 1 263 539 810 5.00e-44 159
Msa0372250 AT4G30020.1 38.163 283 144 12 1 263 539 810 5.00e-44 159
Msa0372250 AT4G30020.4 38.163 283 144 12 1 263 539 810 5.00e-44 159
Msa0372250 AT4G30020.2 38.163 283 144 12 1 263 539 810 5.00e-44 159
Msa0372250 AT2G19170.1 37.589 282 147 12 1 263 538 809 5.57e-41 150
Msa0372250 AT2G19170.2 37.589 282 147 12 1 263 538 809 5.57e-41 150
Msa0372250 AT5G44530.1 34.276 283 155 9 4 266 564 835 1.94e-40 149
Msa0372250 AT4G20430.2 33.213 277 162 7 4 264 555 824 1.92e-38 143
Msa0372250 AT4G20430.3 33.213 277 162 7 4 264 579 848 2.37e-38 143
Msa0372250 AT4G20430.1 33.213 277 162 7 4 264 579 848 2.37e-38 143
Msa0372250 AT2G39850.1 35.811 296 143 15 1 267 491 768 3.10e-38 142
Msa0372250 AT1G30600.1 32.258 279 165 8 4 264 554 826 1.54e-37 140
Msa0372250 AT5G44530.2 31.494 308 155 10 4 266 564 860 7.27e-36 135
Msa0372250 AT1G62340.1 35.484 279 156 11 4 267 563 832 6.28e-34 130
Msa0372250 AT5G58840.3 53.333 90 42 0 1 90 443 532 2.02e-28 114
Msa0372250 AT5G59110.1 40.123 162 87 5 112 264 6 166 2.04e-26 102
Msa0372250 AT5G03620.2 49.425 87 44 0 4 90 490 576 5.77e-22 95.5
Msa0372250 AT4G00230.2 45.652 92 50 0 1 92 480 571 1.03e-21 94.7
Msa0372250 AT1G32940.3 47.959 98 44 1 1 98 503 593 4.81e-17 80.9

Find 125 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCAAAATTTGATAATTT+TGG 0.086768 3_1:+70567099 Msa0372250:five_prime_UTR
GCATCTGTTGCTTTAATAAT+TGG 0.089925 3_1:-70567842 None:intergenic
TAAAGCAACAGATGCTAAAT+TGG 0.221704 3_1:+70567850 Msa0372250:five_prime_UTR
TGAGAACCTTGTATCCTTCT+TGG 0.224032 3_1:+70568659 Msa0372250:CDS
ATTAGTTGTGAAAGCTATTT+AGG 0.233076 3_1:+70569535 Msa0372250:CDS
ATTGTTGGTTATTTGGAAAT+TGG 0.236564 3_1:+70567321 Msa0372250:five_prime_UTR
TTCACTAGTTATGTTCTTCT+TGG 0.240053 3_1:+70567589 Msa0372250:five_prime_UTR
GTTGTTGTTGCTTGCTCTGC+TGG 0.279959 3_1:+70567484 Msa0372250:five_prime_UTR
ATCTCGGGTACAATGGTATT+TGG 0.284686 3_1:-70568384 None:intergenic
CCTCACATTTCGGGAATTGC+AGG 0.300965 3_1:+70568631 Msa0372250:CDS
AAATGGTGTTGCTTGGCTTT+TGG 0.308707 3_1:-70569063 None:intergenic
TGTGATCCAGAGTCCCATTC+TGG 0.311076 3_1:-70567978 None:intergenic
TTATTCCAAATTGTAGCTTC+TGG 0.315049 3_1:+70569617 Msa0372250:three_prime_UTR
GGTTATTTGGAAATTGGTTT+TGG 0.327450 3_1:+70567327 Msa0372250:five_prime_UTR
AACTCCCAGAAGCTACAATT+TGG 0.329080 3_1:-70569622 None:intergenic
TACAATGGTATTTGGCCCTT+TGG 0.331318 3_1:-70568376 None:intergenic
TAAATAGCTTTCACAACTAA+TGG 0.332014 3_1:-70569533 None:intergenic
AAATCATTTCATAAATATTC+CGG 0.336856 3_1:+70567443 Msa0372250:five_prime_UTR
TTCAACTTCTTATGTGCATT+AGG 0.338449 3_1:+70569164 Msa0372250:CDS
TGTCCTGCTCCGTAGCTAAA+TGG 0.340490 3_1:-70569080 None:intergenic
ATGTCGAGCCCTCACATTTC+GGG 0.340640 3_1:+70568622 Msa0372250:CDS
ATTTCCACTATTGTTATCAT+TGG 0.342216 3_1:-70568094 None:intergenic
GCTTGCTCTGCTGGCAATGA+TGG 0.343896 3_1:+70567493 Msa0372250:five_prime_UTR
CAACGAGGCAGAGCCAATTC+TGG 0.347976 3_1:+70569034 Msa0372250:CDS
CCTTATCCACTCCTCCATTC+AGG 0.352074 3_1:-70568029 None:intergenic
TGAGGATACTGAAATTCTTA+TGG 0.352631 3_1:-70569235 None:intergenic
CCAGGATCTATTGCACTGTT+TGG 0.352830 3_1:-70569110 None:intergenic
TTTCTATCAACCAATGTGAT+TGG 0.355031 3_1:-70567271 None:intergenic
ACCCAGAAAAGCTCAGTTCA+TGG 0.358192 3_1:+70567080 Msa0372250:five_prime_UTR
CATGTCGAGCCCTCACATTT+CGG 0.360421 3_1:+70568621 Msa0372250:CDS
TTACATTTCTAGTTGATTAG+TGG 0.363651 3_1:+70569590 Msa0372250:three_prime_UTR
CTGTGATTGAAGGATAGTTT+AGG 0.376700 3_1:-70569259 None:intergenic
GGAAGAACAGAAAGCCAATT+GGG 0.382375 3_1:-70567223 None:intergenic
CATCTGTTGCTTTAATAATT+GGG 0.387808 3_1:-70567841 None:intergenic
TATTCCAAATTGTAGCTTCT+GGG 0.393187 3_1:+70569618 Msa0372250:three_prime_UTR
GTCACTGATCCAGAGAGATT+TGG 0.395242 3_1:-70569284 None:intergenic
TTTGATGCAGTAGCATCATT+TGG 0.397401 3_1:-70567517 None:intergenic
TTGTCGATCTCTTCATTAGT+TGG 0.405128 3_1:-70568562 None:intergenic
ACACCTGGTGCTGTGATATC+AGG 0.406349 3_1:-70568505 None:intergenic
TGGCAACGGTTTAAGCTTCA+AGG 0.407648 3_1:+70567609 Msa0372250:five_prime_UTR
AAATTCTTATGGCATTTGTA+AGG 0.408510 3_1:-70569224 None:intergenic
CTTGCCAATGATAACAATAG+TGG 0.413339 3_1:+70568090 Msa0372250:five_prime_UTR
TGATCAAGAATGAGATTTGT+GGG 0.416911 3_1:-70567023 None:intergenic
TTCTATCAACCAATGTGATT+GGG 0.424736 3_1:-70567270 None:intergenic
TGCAGCAAGCTTTGCCAGAA+TGG 0.430436 3_1:+70567964 Msa0372250:five_prime_UTR
CAACAACAATATTTGTAAAC+CGG 0.431164 3_1:-70567462 None:intergenic
GAGAAATTTATGTTAGAAGC+AGG 0.435055 3_1:-70568144 None:intergenic
CTTGTATCCTTCTTGGAGTC+CGG 0.441288 3_1:+70568666 Msa0372250:CDS
GAATGAGATTTGTGGGATTG+AGG 0.442758 3_1:-70567016 None:intergenic
ATGTGTTTGGTACGCTGATT+TGG 0.447047 3_1:+70569483 Msa0372250:CDS
ACATGAACAATGTATGTTCC+TGG 0.448709 3_1:-70569338 None:intergenic
ATCACAGTTCCAAATCTCTC+TGG 0.457484 3_1:+70569275 Msa0372250:CDS
TGAGTAAGACAAATTGAATT+CGG 0.461464 3_1:-70568588 None:intergenic
GATTAACACCTTTAGAATCT+CGG 0.462819 3_1:-70568400 None:intergenic
AGGAAGAACAGAAAGCCAAT+TGG 0.469166 3_1:-70567224 None:intergenic
TTTGTGGGATTGAGGAATTG+AGG 0.470007 3_1:-70567008 None:intergenic
CCTGAATGGAGGAGTGGATA+AGG 0.471847 3_1:+70568029 Msa0372250:five_prime_UTR
CGTAGCTAAATGGTGTTGCT+TGG 0.475617 3_1:-70569070 None:intergenic
GCAACAAAGAGTTATGTGTT+TGG 0.477544 3_1:+70569470 Msa0372250:CDS
GAATTGGTTGTTGGAGATGA+AGG 0.478589 3_1:+70567349 Msa0372250:five_prime_UTR
TCGAAAAGAGAAGAATGAAA+AGG 0.479236 3_1:+70567376 Msa0372250:five_prime_UTR
TTGATCAAGAATGAGATTTG+TGG 0.480475 3_1:-70567024 None:intergenic
AAAATAGTAGTGTGCCTGAA+TGG 0.485193 3_1:+70568015 Msa0372250:five_prime_UTR
AGATTTGGAACTGTGATTGA+AGG 0.488637 3_1:-70569269 None:intergenic
GCAGCAAGCTTTGCCAGAAT+GGG 0.489122 3_1:+70567965 Msa0372250:five_prime_UTR
ATTAACACCTTTAGAATCTC+GGG 0.499143 3_1:-70568399 None:intergenic
CTGGATCAGTGACAGTTACA+AGG 0.503629 3_1:+70569294 Msa0372250:CDS
GGATGAAAATATTGCCATGA+TGG 0.505910 3_1:-70568355 None:intergenic
CACTATTGTTATCATTGGCA+AGG 0.506923 3_1:-70568089 None:intergenic
AAATTGAGATACCTACCAAA+TGG 0.508336 3_1:+70566956 Msa0372250:five_prime_UTR
TTGAAGGATAGTTTAGGTTG+AGG 0.511051 3_1:-70569253 None:intergenic
CAGCCTGATATCACAGCACC+AGG 0.512049 3_1:+70568502 Msa0372250:intron
TCTAACATAAATTTCTCTGA+TGG 0.516359 3_1:+70568150 Msa0372250:five_prime_UTR
CTGCATCAAATCTAGCTCCT+TGG 0.516497 3_1:+70567530 Msa0372250:five_prime_UTR
GTAAAATTGAAAGTTAAGAA+AGG 0.521050 3_1:+70569443 Msa0372250:CDS
CTGAATGGAGGAGTGGATAA+GGG 0.525356 3_1:+70568030 Msa0372250:five_prime_UTR
GAACTCTCTATCCATTGTGC+TGG 0.525429 3_1:-70567569 None:intergenic
GCTCTTATAGCTGGTGCTGT+AGG 0.530131 3_1:+70568060 Msa0372250:five_prime_UTR
CCAAACAGTGCAATAGATCC+TGG 0.530386 3_1:+70569110 Msa0372250:CDS
AGTTATGTTCTTCTTGGCAA+CGG 0.530911 3_1:+70567595 Msa0372250:five_prime_UTR
AAGGATACAAGGTTCTCAAA+AGG 0.532636 3_1:-70568654 None:intergenic
GCTTTGCCAGAATGGGACTC+TGG 0.533934 3_1:+70567972 Msa0372250:five_prime_UTR
GGTACGCTGATTTGGTCAGA+TGG 0.536541 3_1:+70569491 Msa0372250:CDS
AAAATGTTGGTGAAGAGAAG+AGG 0.537396 3_1:+70569414 Msa0372250:CDS
GGAGAACAAGCTCTTATAGC+TGG 0.537634 3_1:+70568051 Msa0372250:five_prime_UTR
ATTCAATTTGTCTTACTCAC+CGG 0.545243 3_1:+70568592 Msa0372250:CDS
ACAGAAACAGTGATCCCACT+TGG 0.545751 3_1:-70569368 None:intergenic
CATTGTACCCGAGATTCTAA+AGG 0.548172 3_1:+70568392 Msa0372250:CDS
TGGCTCTTCAGCTTCAGTGA+AGG 0.552957 3_1:-70568542 None:intergenic
GTTATGTCATAAACAAGTCC+AGG 0.556512 3_1:-70569128 None:intergenic
GCTCCTTGGTATATCACAGT+TGG 0.557076 3_1:+70567544 Msa0372250:five_prime_UTR
GATGAAAATATTGCCATGAT+GGG 0.560543 3_1:-70568354 None:intergenic
ATTGTTATTCCCAATCACAT+TGG 0.561112 3_1:+70567261 Msa0372250:five_prime_UTR
ACACCATTTAGCTACGGAGC+AGG 0.563765 3_1:+70569077 Msa0372250:CDS
TATAGCTGGTGCTGTAGGAG+TGG 0.566698 3_1:+70568065 Msa0372250:five_prime_UTR
ATAGCAGATTTAATAGCAGC+CGG 0.569981 3_1:-70568685 None:intergenic
CGAAATGTGAGGGCTCGACA+TGG 0.572068 3_1:-70568620 None:intergenic
AGGGCTCGACATGGATGTGC+CGG 0.572843 3_1:-70568611 None:intergenic
CGGACTCCAAGAAGGATACA+AGG 0.588458 3_1:-70568665 None:intergenic
CTTTAGAATCTCGGGTACAA+TGG 0.591821 3_1:-70568391 None:intergenic
AAATCTGCTATCATGACCAC+AGG 0.593204 3_1:+70568697 Msa0372250:CDS
CTGCAATTCCCGAAATGTGA+GGG 0.602176 3_1:-70568630 None:intergenic
CACAGTTGGTGCCAGCACAA+TGG 0.602894 3_1:+70567558 Msa0372250:five_prime_UTR
ATAGCAGCCGGACTCCAAGA+AGG 0.603386 3_1:-70568673 None:intergenic
GTACGCTGATTTGGTCAGAT+GGG 0.604769 3_1:+70569492 Msa0372250:CDS
TCTGGATCACAAGAAGGTGA+AGG 0.614201 3_1:+70567990 Msa0372250:five_prime_UTR
CAGAAACAGTGATCCCACTT+GGG 0.616175 3_1:-70569367 None:intergenic
CAAGCAACACCATTTAGCTA+CGG 0.620162 3_1:+70569071 Msa0372250:CDS
TTCATGTTCAGAACCCAAGT+GGG 0.624610 3_1:+70569354 Msa0372250:CDS
TGGGACTCTGGATCACAAGA+AGG 0.633879 3_1:+70567984 Msa0372250:five_prime_UTR
CTGGATCACAAGAAGGTGAA+GGG 0.633941 3_1:+70567991 Msa0372250:five_prime_UTR
GAGGCAGAGCCAATTCTGGA+TGG 0.634768 3_1:+70569038 Msa0372250:CDS
GCTGCTATAACCGACACACC+TGG 0.638678 3_1:-70568520 None:intergenic
GAAGAACAGAAAGCCAATTG+GGG 0.645538 3_1:-70567222 None:intergenic
GTTCATGTTCAGAACCCAAG+TGG 0.651614 3_1:+70569353 Msa0372250:CDS
TTAGAAGCAGGAAGAACATG+AGG 0.651996 3_1:-70568132 None:intergenic
ATAGTAGTGTGCCTGAATGG+AGG 0.653182 3_1:+70568018 Msa0372250:five_prime_UTR
GGATGTGTAATATAAGCCAC+TGG 0.654484 3_1:-70568303 None:intergenic
TATCACAGCACCAGGTGTGT+CGG 0.657844 3_1:+70568510 Msa0372250:CDS
TGAAAATATTGCCATGATGG+GGG 0.660947 3_1:-70568352 None:intergenic
CCTGCAATTCCCGAAATGTG+AGG 0.663023 3_1:-70568631 None:intergenic
ATGAAAATATTGCCATGATG+GGG 0.674957 3_1:-70568353 None:intergenic
AGTGTGCCTGAATGGAGGAG+TGG 0.692602 3_1:+70568023 Msa0372250:five_prime_UTR
GCACCAACTGTGATATACCA+AGG 0.694138 3_1:-70567547 None:intergenic
AGCTACAACATTAGACAACG+AGG 0.743950 3_1:+70569019 Msa0372250:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGTTTTTCAATTAAAAAT+TGG + chr3_1:70567141-70567160 Msa0372250:five_prime_UTR 10.0%
!!! ATTTTTAATTGAAAACTAAA+AGG - chr3_1:70567168-70567187 None:intergenic 10.0%
!!! TTTTAGTTTTCAATTAAAAA+TGG + chr3_1:70567167-70567186 Msa0372250:five_prime_UTR 10.0%
!! TTATTCATTACTAAAAAATT+TGG - chr3_1:70567297-70567316 None:intergenic 10.0%
!!! TTTTCAATTAAAAATGGATT+AGG + chr3_1:70567173-70567192 Msa0372250:five_prime_UTR 15.0%
!! GTAATGAATAAAAAAATTGT+TGG + chr3_1:70567306-70567325 Msa0372250:five_prime_UTR 15.0%
!!! TAAAAAAATTGTTGGTTATT+TGG + chr3_1:70567314-70567333 Msa0372250:five_prime_UTR 15.0%
!! AAATCATTTCATAAATATTC+CGG + chr3_1:70567443-70567462 Msa0372250:five_prime_UTR 15.0%
!!! TTTTTGAACTTCAATATATT+TGG - chr3_1:70569398-70569417 None:intergenic 15.0%
!!! ATCTCAATTTTAATTTTTCC+CGG - chr3_1:70566946-70566965 None:intergenic 20.0%
!!! GAATTTTTATGTTATCCATT+TGG - chr3_1:70566974-70566993 None:intergenic 20.0%
!!! ATGGCAAAATTTGATAATTT+TGG + chr3_1:70567099-70567118 Msa0372250:five_prime_UTR 20.0%
!!! TTGATAATTTTGGATATAGA+AGG + chr3_1:70567109-70567128 Msa0372250:five_prime_UTR 20.0%
!! AACAATATGTAAGAGAAAAA+AGG - chr3_1:70567247-70567266 None:intergenic 20.0%
!! AATATATCATCAAAAGAAGT+TGG - chr3_1:70567658-70567677 None:intergenic 20.0%
!!! TACTGTAATTTTCTATCAAT+AGG + chr3_1:70567692-70567711 Msa0372250:intron 20.0%
!! ATATTGAAGTTCAAAAATGT+TGG + chr3_1:70569401-70569420 Msa0372250:CDS 20.0%
!! GTAAAATTGAAAGTTAAGAA+AGG + chr3_1:70569443-70569462 Msa0372250:CDS 20.0%
!! TTTTATGTTATCCATTTGGT+AGG - chr3_1:70566970-70566989 None:intergenic 25.0%
!! TTTTGGATATAGAAGGAAAA+AGG + chr3_1:70567116-70567135 Msa0372250:five_prime_UTR 25.0%
! TTTGGATATAGAAGGAAAAA+GGG + chr3_1:70567117-70567136 Msa0372250:five_prime_UTR 25.0%
!! ATTGTTGGTTATTTGGAAAT+TGG + chr3_1:70567321-70567340 Msa0372250:five_prime_UTR 25.0%
!! ATGCATTTTGTTAGAATTTC+TGG + chr3_1:70567420-70567439 Msa0372250:five_prime_UTR 25.0%
! CAACAACAATATTTGTAAAC+CGG - chr3_1:70567465-70567484 None:intergenic 25.0%
!! ATAATTGGGTAGAATTTTTG+TGG - chr3_1:70567830-70567849 None:intergenic 25.0%
!!! CATCTGTTGCTTTAATAATT+GGG - chr3_1:70567844-70567863 None:intergenic 25.0%
! TCAATTAGATCAAGTTACAT+TGG - chr3_1:70567940-70567959 None:intergenic 25.0%
! ATTTCCACTATTGTTATCAT+TGG - chr3_1:70568097-70568116 None:intergenic 25.0%
! TCTAACATAAATTTCTCTGA+TGG + chr3_1:70568150-70568169 Msa0372250:five_prime_UTR 25.0%
!!! TTAGTATGCAATTTTGTTGT+TGG - chr3_1:70568327-70568346 None:intergenic 25.0%
! ACATAACAATAGATTACAAG+AGG - chr3_1:70568450-70568469 None:intergenic 25.0%
! TGAGTAAGACAAATTGAATT+CGG - chr3_1:70568591-70568610 None:intergenic 25.0%
! TTGGTTAAATTCGCATTATA+CGG - chr3_1:70568865-70568884 None:intergenic 25.0%
! AAATTCTTATGGCATTTGTA+AGG - chr3_1:70569227-70569246 None:intergenic 25.0%
! TAAATAGCTTTCACAACTAA+TGG - chr3_1:70569536-70569555 None:intergenic 25.0%
! ATTAGTTGTGAAAGCTATTT+AGG + chr3_1:70569535-70569554 Msa0372250:CDS 25.0%
!!! TTACATTTCTAGTTGATTAG+TGG + chr3_1:70569590-70569609 Msa0372250:three_prime_UTR 25.0%
AAATTGAGATACCTACCAAA+TGG + chr3_1:70566956-70566975 Msa0372250:five_prime_UTR 30.0%
TGATCAAGAATGAGATTTGT+GGG - chr3_1:70567026-70567045 None:intergenic 30.0%
TTGATCAAGAATGAGATTTG+TGG - chr3_1:70567027-70567046 None:intergenic 30.0%
TTGGATATAGAAGGAAAAAG+GGG + chr3_1:70567118-70567137 Msa0372250:five_prime_UTR 30.0%
!!! TTCTTTTTTAACACCCCAAT+TGG + chr3_1:70567209-70567228 Msa0372250:five_prime_UTR 30.0%
! ATTGTTATTCCCAATCACAT+TGG + chr3_1:70567261-70567280 Msa0372250:five_prime_UTR 30.0%
TTCTATCAACCAATGTGATT+GGG - chr3_1:70567273-70567292 None:intergenic 30.0%
TTTCTATCAACCAATGTGAT+TGG - chr3_1:70567274-70567293 None:intergenic 30.0%
!! GGTTATTTGGAAATTGGTTT+TGG + chr3_1:70567327-70567346 Msa0372250:five_prime_UTR 30.0%
!!! TTGGAAATTGGTTTTGGAAT+TGG + chr3_1:70567333-70567352 Msa0372250:five_prime_UTR 30.0%
TCGAAAAGAGAAGAATGAAA+AGG + chr3_1:70567376-70567395 Msa0372250:five_prime_UTR 30.0%
TTCACTAGTTATGTTCTTCT+TGG + chr3_1:70567589-70567608 Msa0372250:five_prime_UTR 30.0%
TGACTCTCAATTATCTTGTT+TGG + chr3_1:70567766-70567785 Msa0372250:intron 30.0%
! ATCTTGTTTGGTTCAATCAA+CGG + chr3_1:70567778-70567797 Msa0372250:intron 30.0%
!! GCATCTGTTGCTTTAATAAT+TGG - chr3_1:70567845-70567864 None:intergenic 30.0%
TAAAGCAACAGATGCTAAAT+TGG + chr3_1:70567850-70567869 Msa0372250:five_prime_UTR 30.0%
GAGAAATTTATGTTAGAAGC+AGG - chr3_1:70568147-70568166 None:intergenic 30.0%
ACACTTAAAACTTGATCGTT+TGG + chr3_1:70568263-70568282 Msa0372250:intron 30.0%
! ATCGTTTGGACTTAACTTTT+AGG + chr3_1:70568277-70568296 Msa0372250:intron 30.0%
ATGAAAATATTGCCATGATG+GGG - chr3_1:70568356-70568375 None:intergenic 30.0%
GATGAAAATATTGCCATGAT+GGG - chr3_1:70568357-70568376 None:intergenic 30.0%
! ATGGCAATATTTTCATCCAA+AGG + chr3_1:70568360-70568379 Msa0372250:CDS 30.0%
! TGGCAATATTTTCATCCAAA+GGG + chr3_1:70568361-70568380 Msa0372250:CDS 30.0%
!! ATTAACACCTTTAGAATCTC+GGG - chr3_1:70568402-70568421 None:intergenic 30.0%
!! GATTAACACCTTTAGAATCT+CGG - chr3_1:70568403-70568422 None:intergenic 30.0%
ATTCAATTTGTCTTACTCAC+CGG + chr3_1:70568592-70568611 Msa0372250:CDS 30.0%
CACAAAAGTTGAGATTTCTT+GGG - chr3_1:70568772-70568791 None:intergenic 30.0%
ACACAAAAGTTGAGATTTCT+TGG - chr3_1:70568773-70568792 None:intergenic 30.0%
TTCAACTTCTTATGTGCATT+AGG + chr3_1:70569164-70569183 Msa0372250:CDS 30.0%
TGAGGATACTGAAATTCTTA+TGG - chr3_1:70569238-70569257 None:intergenic 30.0%
ACAAGGACATCAAAAAATGT+TGG + chr3_1:70569311-70569330 Msa0372250:CDS 30.0%
!!! TTGGTTTTGGAATTGGTTGT+TGG + chr3_1:70567340-70567359 Msa0372250:five_prime_UTR 35.0%
TTTGATGCAGTAGCATCATT+TGG - chr3_1:70567520-70567539 None:intergenic 35.0%
AGTTATGTTCTTCTTGGCAA+CGG + chr3_1:70567595-70567614 Msa0372250:five_prime_UTR 35.0%
! TCTTGTTTGGTTCAATCAAC+GGG + chr3_1:70567779-70567798 Msa0372250:intron 35.0%
AAAATAGTAGTGTGCCTGAA+TGG + chr3_1:70568015-70568034 Msa0372250:five_prime_UTR 35.0%
CACTATTGTTATCATTGGCA+AGG - chr3_1:70568092-70568111 None:intergenic 35.0%
CTTGCCAATGATAACAATAG+TGG + chr3_1:70568090-70568109 Msa0372250:five_prime_UTR 35.0%
AGACTGCTAGATTTCTTACT+TGG - chr3_1:70568205-70568224 None:intergenic 35.0%
AGAAATCTAGCAGTCTAGTT+TGG + chr3_1:70568209-70568228 Msa0372250:intron 35.0%
TGAAAATATTGCCATGATGG+GGG - chr3_1:70568355-70568374 None:intergenic 35.0%
GGATGAAAATATTGCCATGA+TGG - chr3_1:70568358-70568377 None:intergenic 35.0%
TTGTCGATCTCTTCATTAGT+TGG - chr3_1:70568565-70568584 None:intergenic 35.0%
AAGGATACAAGGTTCTCAAA+AGG - chr3_1:70568657-70568676 None:intergenic 35.0%
ATAGCAGATTTAATAGCAGC+CGG - chr3_1:70568688-70568707 None:intergenic 35.0%
TCTCAATTCAGCACTTACAT+TGG - chr3_1:70568884-70568903 None:intergenic 35.0%
AGGTTGAGATGAATACTACA+CGG - chr3_1:70568974-70568993 None:intergenic 35.0%
GTTGTAGCTGAAAATGATAG+AGG - chr3_1:70569008-70569027 None:intergenic 35.0%
GTTATGTCATAAACAAGTCC+AGG - chr3_1:70569131-70569150 None:intergenic 35.0%
!! TTGAAGGATAGTTTAGGTTG+AGG - chr3_1:70569256-70569275 None:intergenic 35.0%
CTGTGATTGAAGGATAGTTT+AGG - chr3_1:70569262-70569281 None:intergenic 35.0%
! AGATTTGGAACTGTGATTGA+AGG - chr3_1:70569272-70569291 None:intergenic 35.0%
ACATGAACAATGTATGTTCC+TGG - chr3_1:70569341-70569360 None:intergenic 35.0%
! AAAATGTTGGTGAAGAGAAG+AGG + chr3_1:70569414-70569433 Msa0372250:CDS 35.0%
GCAACAAAGAGTTATGTGTT+TGG + chr3_1:70569470-70569489 Msa0372250:CDS 35.0%
TTTGTGGGATTGAGGAATTG+AGG - chr3_1:70567011-70567030 None:intergenic 40.0%
GAATGAGATTTGTGGGATTG+AGG - chr3_1:70567019-70567038 None:intergenic 40.0%
GAAGAACAGAAAGCCAATTG+GGG - chr3_1:70567225-70567244 None:intergenic 40.0%
GGAAGAACAGAAAGCCAATT+GGG - chr3_1:70567226-70567245 None:intergenic 40.0%
AGGAAGAACAGAAAGCCAAT+TGG - chr3_1:70567227-70567246 None:intergenic 40.0%
GAATTGGTTGTTGGAGATGA+AGG + chr3_1:70567349-70567368 Msa0372250:five_prime_UTR 40.0%
! CTTGTTTGGTTCAATCAACG+GGG + chr3_1:70567780-70567799 Msa0372250:intron 40.0%
! TTGTTTGGTTCAATCAACGG+GGG + chr3_1:70567781-70567800 Msa0372250:intron 40.0%
TTAGAAGCAGGAAGAACATG+AGG - chr3_1:70568135-70568154 None:intergenic 40.0%
!! CTTAACTTTTAGGTCTCCAG+TGG + chr3_1:70568287-70568306 Msa0372250:intron 40.0%
GGATGTGTAATATAAGCCAC+TGG - chr3_1:70568306-70568325 None:intergenic 40.0%
TACAATGGTATTTGGCCCTT+TGG - chr3_1:70568379-70568398 None:intergenic 40.0%
ATCTCGGGTACAATGGTATT+TGG - chr3_1:70568387-70568406 None:intergenic 40.0%
!! CTTTAGAATCTCGGGTACAA+TGG - chr3_1:70568394-70568413 None:intergenic 40.0%
CATTGTACCCGAGATTCTAA+AGG + chr3_1:70568392-70568411 Msa0372250:CDS 40.0%
TGAGAACCTTGTATCCTTCT+TGG + chr3_1:70568659-70568678 Msa0372250:CDS 40.0%
AAATCTGCTATCATGACCAC+AGG + chr3_1:70568697-70568716 Msa0372250:CDS 40.0%
CAAGAGTTTCTTCTTACCTG+TGG - chr3_1:70568716-70568735 None:intergenic 40.0%
CACAGGTAAGAAGAAACTCT+TGG + chr3_1:70568714-70568733 Msa0372250:intron 40.0%
TCGCATTATACGGAAGTTCA+AGG - chr3_1:70568855-70568874 None:intergenic 40.0%
GTGTAGTATTCATCTCAACC+TGG + chr3_1:70568973-70568992 Msa0372250:intron 40.0%
TGATAGAGGACAATTAGACC+AGG - chr3_1:70568994-70569013 None:intergenic 40.0%
AGCTACAACATTAGACAACG+AGG + chr3_1:70569019-70569038 Msa0372250:intron 40.0%
! CTTTTGGTACCATCCAGAAT+TGG - chr3_1:70569050-70569069 None:intergenic 40.0%
!!! AAATGGTGTTGCTTGGCTTT+TGG - chr3_1:70569066-70569085 None:intergenic 40.0%
CAAGCAACACCATTTAGCTA+CGG + chr3_1:70569071-70569090 Msa0372250:CDS 40.0%
ATCACAGTTCCAAATCTCTC+TGG + chr3_1:70569275-70569294 Msa0372250:CDS 40.0%
! TCAAAAAATGTTGGTGCTCC+AGG + chr3_1:70569320-70569339 Msa0372250:CDS 40.0%
TTCATGTTCAGAACCCAAGT+GGG + chr3_1:70569354-70569373 Msa0372250:CDS 40.0%
! ATGTGTTTGGTACGCTGATT+TGG + chr3_1:70569483-70569502 Msa0372250:CDS 40.0%
ACCCAGAAAAGCTCAGTTCA+TGG + chr3_1:70567080-70567099 Msa0372250:five_prime_UTR 45.0%
! GCCATGAACTGAGCTTTTCT+GGG - chr3_1:70567084-70567103 None:intergenic 45.0%
! TGCCATGAACTGAGCTTTTC+TGG - chr3_1:70567085-70567104 None:intergenic 45.0%
! CTGCATCAAATCTAGCTCCT+TGG + chr3_1:70567530-70567549 Msa0372250:five_prime_UTR 45.0%
GCTCCTTGGTATATCACAGT+TGG + chr3_1:70567544-70567563 Msa0372250:five_prime_UTR 45.0%
GCACCAACTGTGATATACCA+AGG - chr3_1:70567550-70567569 None:intergenic 45.0%
GAACTCTCTATCCATTGTGC+TGG - chr3_1:70567572-70567591 None:intergenic 45.0%
TGGCAACGGTTTAAGCTTCA+AGG + chr3_1:70567609-70567628 Msa0372250:five_prime_UTR 45.0%
TCTGGATCACAAGAAGGTGA+AGG + chr3_1:70567990-70568009 Msa0372250:five_prime_UTR 45.0%
CTGGATCACAAGAAGGTGAA+GGG + chr3_1:70567991-70568010 Msa0372250:five_prime_UTR 45.0%
ATAGTAGTGTGCCTGAATGG+AGG + chr3_1:70568018-70568037 Msa0372250:five_prime_UTR 45.0%
CTGAATGGAGGAGTGGATAA+GGG + chr3_1:70568030-70568049 Msa0372250:five_prime_UTR 45.0%
GGAGAACAAGCTCTTATAGC+TGG + chr3_1:70568051-70568070 Msa0372250:five_prime_UTR 45.0%
! TCTAGCAGTCTAGTTTGGTG+TGG + chr3_1:70568214-70568233 Msa0372250:intron 45.0%
CTGCAATTCCCGAAATGTGA+GGG - chr3_1:70568633-70568652 None:intergenic 45.0%
CTTGTATCCTTCTTGGAGTC+CGG + chr3_1:70568666-70568685 Msa0372250:CDS 45.0%
!! CGTAGCTAAATGGTGTTGCT+TGG - chr3_1:70569073-70569092 None:intergenic 45.0%
CCAGGATCTATTGCACTGTT+TGG - chr3_1:70569113-70569132 None:intergenic 45.0%
CCAAACAGTGCAATAGATCC+TGG + chr3_1:70569110-70569129 Msa0372250:CDS 45.0%
GTCACTGATCCAGAGAGATT+TGG - chr3_1:70569287-70569306 None:intergenic 45.0%
CTGGATCAGTGACAGTTACA+AGG + chr3_1:70569294-70569313 Msa0372250:CDS 45.0%
GTTCATGTTCAGAACCCAAG+TGG + chr3_1:70569353-70569372 Msa0372250:CDS 45.0%
CAGAAACAGTGATCCCACTT+GGG - chr3_1:70569370-70569389 None:intergenic 45.0%
ACAGAAACAGTGATCCCACT+TGG - chr3_1:70569371-70569390 None:intergenic 45.0%
!! GTACGCTGATTTGGTCAGAT+GGG + chr3_1:70569492-70569511 Msa0372250:CDS 45.0%
! GTTGTTGTTGCTTGCTCTGC+TGG + chr3_1:70567484-70567503 Msa0372250:five_prime_UTR 50.0%
TGCAGCAAGCTTTGCCAGAA+TGG + chr3_1:70567964-70567983 Msa0372250:five_prime_UTR 50.0%
GCAGCAAGCTTTGCCAGAAT+GGG + chr3_1:70567965-70567984 Msa0372250:five_prime_UTR 50.0%
TGTGATCCAGAGTCCCATTC+TGG - chr3_1:70567981-70568000 None:intergenic 50.0%
TGGGACTCTGGATCACAAGA+AGG + chr3_1:70567984-70568003 Msa0372250:five_prime_UTR 50.0%
CCTTATCCACTCCTCCATTC+AGG - chr3_1:70568032-70568051 None:intergenic 50.0%
CCTGAATGGAGGAGTGGATA+AGG + chr3_1:70568029-70568048 Msa0372250:five_prime_UTR 50.0%
!! GCTCTTATAGCTGGTGCTGT+AGG + chr3_1:70568060-70568079 Msa0372250:five_prime_UTR 50.0%
!! TATAGCTGGTGCTGTAGGAG+TGG + chr3_1:70568065-70568084 Msa0372250:five_prime_UTR 50.0%
TACTAAACCAGCCCCCATCA+TGG + chr3_1:70568341-70568360 Msa0372250:exon 50.0%
! AATATTGCCATGATGGGGGC+TGG - chr3_1:70568351-70568370 None:intergenic 50.0%
!! ACACCTGGTGCTGTGATATC+AGG - chr3_1:70568508-70568527 None:intergenic 50.0%
TATCACAGCACCAGGTGTGT+CGG + chr3_1:70568510-70568529 Msa0372250:CDS 50.0%
TGGCTCTTCAGCTTCAGTGA+AGG - chr3_1:70568545-70568564 None:intergenic 50.0%
CATGTCGAGCCCTCACATTT+CGG + chr3_1:70568621-70568640 Msa0372250:CDS 50.0%
ATGTCGAGCCCTCACATTTC+GGG + chr3_1:70568622-70568641 Msa0372250:CDS 50.0%
CCTGCAATTCCCGAAATGTG+AGG - chr3_1:70568634-70568653 None:intergenic 50.0%
CCTCACATTTCGGGAATTGC+AGG + chr3_1:70568631-70568650 Msa0372250:CDS 50.0%
CGGACTCCAAGAAGGATACA+AGG - chr3_1:70568668-70568687 None:intergenic 50.0%
ACACCATTTAGCTACGGAGC+AGG + chr3_1:70569077-70569096 Msa0372250:CDS 50.0%
TGTCCTGCTCCGTAGCTAAA+TGG - chr3_1:70569083-70569102 None:intergenic 50.0%
!! GGTACGCTGATTTGGTCAGA+TGG + chr3_1:70569491-70569510 Msa0372250:CDS 50.0%
GCTTGCTCTGCTGGCAATGA+TGG + chr3_1:70567493-70567512 Msa0372250:five_prime_UTR 55.0%
!! CACAGTTGGTGCCAGCACAA+TGG + chr3_1:70567558-70567577 Msa0372250:five_prime_UTR 55.0%
GCTTTGCCAGAATGGGACTC+TGG + chr3_1:70567972-70567991 Msa0372250:five_prime_UTR 55.0%
AGTGTGCCTGAATGGAGGAG+TGG + chr3_1:70568023-70568042 Msa0372250:five_prime_UTR 55.0%
CAGCCTGATATCACAGCACC+AGG + chr3_1:70568502-70568521 Msa0372250:intron 55.0%
GCTGCTATAACCGACACACC+TGG - chr3_1:70568523-70568542 None:intergenic 55.0%
CGAAATGTGAGGGCTCGACA+TGG - chr3_1:70568623-70568642 None:intergenic 55.0%
ATAGCAGCCGGACTCCAAGA+AGG - chr3_1:70568676-70568695 None:intergenic 55.0%
CAACGAGGCAGAGCCAATTC+TGG + chr3_1:70569034-70569053 Msa0372250:CDS 55.0%
GAGGCAGAGCCAATTCTGGA+TGG + chr3_1:70569038-70569057 Msa0372250:CDS 55.0%
AGGGCTCGACATGGATGTGC+CGG - chr3_1:70568614-70568633 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 70566932 70569639 70566932 ID=Msa0372250;Name=Msa0372250
chr3_1 mRNA 70566932 70569639 70566932 ID=Msa0372250-mRNA-1;Parent=Msa0372250;Name=Msa0372250-mRNA-1;_AED=0.11;_eAED=0.11;_QI=1087|1|1|1|0.6|0.66|6|83|267
chr3_1 exon 70566932 70567630 70566932 ID=Msa0372250-mRNA-1:exon:15350;Parent=Msa0372250-mRNA-1
chr3_1 exon 70567808 70567885 70567808 ID=Msa0372250-mRNA-1:exon:15351;Parent=Msa0372250-mRNA-1
chr3_1 exon 70567957 70568205 70567957 ID=Msa0372250-mRNA-1:exon:15352;Parent=Msa0372250-mRNA-1
chr3_1 exon 70568299 70568413 70568299 ID=Msa0372250-mRNA-1:exon:15353;Parent=Msa0372250-mRNA-1
chr3_1 exon 70568505 70568718 70568505 ID=Msa0372250-mRNA-1:exon:15354;Parent=Msa0372250-mRNA-1
chr3_1 exon 70569021 70569639 70569021 ID=Msa0372250-mRNA-1:exon:15355;Parent=Msa0372250-mRNA-1
chr3_1 five_prime_UTR 70566932 70567630 70566932 ID=Msa0372250-mRNA-1:five_prime_utr;Parent=Msa0372250-mRNA-1
chr3_1 five_prime_UTR 70567808 70567885 70567808 ID=Msa0372250-mRNA-1:five_prime_utr;Parent=Msa0372250-mRNA-1
chr3_1 five_prime_UTR 70567957 70568205 70567957 ID=Msa0372250-mRNA-1:five_prime_utr;Parent=Msa0372250-mRNA-1
chr3_1 five_prime_UTR 70568299 70568359 70568299 ID=Msa0372250-mRNA-1:five_prime_utr;Parent=Msa0372250-mRNA-1
chr3_1 CDS 70568360 70568413 70568360 ID=Msa0372250-mRNA-1:cds;Parent=Msa0372250-mRNA-1
chr3_1 CDS 70568505 70568718 70568505 ID=Msa0372250-mRNA-1:cds;Parent=Msa0372250-mRNA-1
chr3_1 CDS 70569021 70569556 70569021 ID=Msa0372250-mRNA-1:cds;Parent=Msa0372250-mRNA-1
chr3_1 three_prime_UTR 70569557 70569639 70569557 ID=Msa0372250-mRNA-1:three_prime_utr;Parent=Msa0372250-mRNA-1
Gene Sequence

>Msa0372250

ATGGCAATATTTTCATCCAAAGGGCCAAATACCATTGTACCCGAGATTCTAAAGCCTGATATCACAGCACCAGGTGTGTCGGTTATAGCAGCCTTCACTGAAGCTGAAGAGCCAACTAATGAAGAGATCGACAATCGCCGAATTCAATTTGTCTTACTCACCGGCACATCCATGTCGAGCCCTCACATTTCGGGAATTGCAGGCCTTTTGAGAACCTTGTATCCTTCTTGGAGTCCGGCTGCTATTAAATCTGCTATCATGACCACAGCTACAACATTAGACAACGAGGCAGAGCCAATTCTGGATGGTACCAAAAGCCAAGCAACACCATTTAGCTACGGAGCAGGACATGTTGAACCAAACAGTGCAATAGATCCTGGACTTGTTTATGACATAACAACGAATGATTATTTCAACTTCTTATGTGCATTAGGCTATAATGAAATACAAATGTCATTATTTTCAAAAGATCCTTACAAATGCCATAAGAATTTCAGTATCCTCAACCTAAACTATCCTTCAATCACAGTTCCAAATCTCTCTGGATCAGTGACAGTTACAAGGACATCAAAAAATGTTGGTGCTCCAGGAACATACATTGTTCATGTTCAGAACCCAAGTGGGATCACTGTTTCTGTGAAGCCAAATATATTGAAGTTCAAAAATGTTGGTGAAGAGAAGAGGTTTGAAGTAAAATTGAAAGTTAAGAAAGGAAAAGCAACAAAGAGTTATGTGTTTGGTACGCTGATTTGGTCAGATGGGAAGCATTATGTTAAGAGTCCATTAGTTGTGAAAGCTATTTAG
Protein sequence

>Msa0372250

MAIFSSKGPNTIVPEILKPDITAPGVSVIAAFTEAEEPTNEEIDNRRIQFVLLTGTSMSSPHISGIAGLLRTLYPSWSPAAIKSAIMTTATTLDNEAEPILDGTKSQATPFSYGAGHVEPNSAIDPGLVYDITTNDYFNFLCALGYNEIQMSLFSKDPYKCHKNFSILNLNYPSITVPNLSGSVTVTRTSKNVGAPGTYIVHVQNPSGITVSVKPNILKFKNVGEEKRFEVKLKVKKGKATKSYVFGTLIWSDGKHYVKSPLVVKAI*