AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0497060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497060 MtrunA17_Chr3g0092041 98.352 182 3 0 40 221 1 182 7.56e-135 376
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497060 AT1G18730.1 58.192 177 71 2 40 215 1 175 1.24e-66 203
Msa0497060 AT1G18730.3 57.627 177 71 2 40 215 1 174 1.66e-66 203
Msa0497060 AT1G18730.5 70.866 127 36 1 90 215 2 128 4.57e-63 192
Msa0497060 AT1G18730.2 52.518 139 62 2 40 177 1 136 9.00e-46 149
Msa0497060 AT1G18730.4 52.518 139 62 2 40 177 1 136 1.05e-45 149

Find 64 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGGTCCTTATGATATA+TGG 0.197318 3_4:-29150776 None:intergenic
GTTTGGGGAGTCTTATTCTT+TGG 0.250564 3_4:+29151865 Msa0497060:CDS
GTACATAATGTTCACTGTTT+GGG 0.251834 3_4:+29151849 Msa0497060:CDS
TGTGCATGCTTCCAACAAAT+TGG 0.273977 3_4:-29150705 None:intergenic
TATGTTTCTGAATCGTAATA+TGG 0.282914 3_4:-29152013 None:intergenic
TGGTCAATTGATGGACTAAA+AGG 0.295742 3_4:-29153637 None:intergenic
GGTACATAATGTTCACTGTT+TGG 0.337904 3_4:+29151848 Msa0497060:CDS
GAGGAGATGGCACTGGAAAC+TGG 0.350136 3_4:+29152047 Msa0497060:CDS
TTATAACCGAGAAAACAATT+TGG 0.357393 3_4:+29151553 Msa0497060:CDS
ATTGCCATCAGTGGAATATC+TGG 0.357533 3_4:-29151498 None:intergenic
CCTCTTTCACAGGTCATTGC+AGG 0.357586 3_4:+29151046 Msa0497060:CDS
ATTACGATTCAGAAACATAT+AGG 0.360570 3_4:+29152017 Msa0497060:CDS
TTACGATTCAGAAACATATA+GGG 0.363321 3_4:+29152018 Msa0497060:CDS
CTCACGCCACAGAGCTTCTC+TGG 0.368380 3_4:-29153508 None:intergenic
GGCAATTCTAGTAGAACAAT+TGG 0.375396 3_4:+29151515 Msa0497060:CDS
GGTTATACAGCAAGAGGTCT+TGG 0.382025 3_4:+29153476 Msa0497060:intron
AACAAAACGATTTACAAGAT+TGG 0.386067 3_4:+29150900 Msa0497060:CDS
ACCGCGCAAATCCAATTTGT+TGG 0.399144 3_4:+29150694 None:intergenic
TTTGTAAATAAGGTGTTAGA+TGG 0.415388 3_4:+29151435 Msa0497060:intron
ACCATGGCCGAAGCTATCAT+TGG 0.453740 3_4:+29150835 Msa0497060:CDS
GGTATCACTTGGTCAATTGA+TGG 0.459374 3_4:-29153646 None:intergenic
ATGTTTCTGAATCGTAATAT+GGG 0.462762 3_4:-29152012 None:intergenic
TTATGGTCCTTATGATATAT+GGG 0.463330 3_4:-29150775 None:intergenic
ATCCCATCCCATATATCATA+AGG 0.468115 3_4:+29150768 Msa0497060:CDS
ACTTGAAGAAGCAGCAAAGA+AGG 0.487076 3_4:+29153575 Msa0497060:CDS
CTTATTCTTTGGTTCCATGA+AGG 0.490823 3_4:+29151876 Msa0497060:CDS
AATGTACTGTTATTAAACTA+CGG 0.491484 3_4:+29153723 Msa0497060:three_prime_UTR
CACAATATAAATCAATGAGC+AGG 0.505811 3_4:+29153768 Msa0497060:three_prime_UTR
GGAGATGGAGGAGATGGCAC+TGG 0.510554 3_4:+29152040 Msa0497060:CDS
TGAAAGAGGGTAGAGTTTGA+AGG 0.517301 3_4:-29151032 None:intergenic
CATAATAATGAGGTATCACT+TGG 0.523201 3_4:-29153657 None:intergenic
TCAGAAACATATAGGGGAGA+TGG 0.524239 3_4:+29152025 Msa0497060:CDS
GCATCTATGTGCAAAGTGAA+TGG 0.524899 3_4:+29151471 Msa0497060:CDS
TTTAATCCTTTGCAGACGCT+TGG 0.529767 3_4:+29151827 Msa0497060:intron
GGTGAAACCAATGATAGCTT+CGG 0.532364 3_4:-29150842 None:intergenic
ATGAATATATGAATTGAAAA+CGG 0.534351 3_4:-29150863 None:intergenic
ACCAATGATAGCTTCGGCCA+TGG 0.534984 3_4:-29150836 None:intergenic
CAAACTCTACCCTCTTTCAC+AGG 0.545894 3_4:+29151036 Msa0497060:CDS
GGTCCTTATGATATATGGGA+TGG 0.548973 3_4:-29150771 None:intergenic
TACATAATGTTCACTGTTTG+GGG 0.555106 3_4:+29151850 Msa0497060:CDS
GTAGAGTTTGAAGGGTGCCT+AGG 0.557136 3_4:-29151023 None:intergenic
CCTGCAATGACCTGTGAAAG+AGG 0.564483 3_4:-29151046 None:intergenic
GTCCTTATGATATATGGGAT+GGG 0.567129 3_4:-29150770 None:intergenic
TATGTATATACATAATAATG+AGG 0.569260 3_4:-29153667 None:intergenic
GGAAGCATGCACATACTTGA+AGG 0.569486 3_4:+29150715 Msa0497060:exon
TTTACCAGATATTCCACTGA+TGG 0.571820 3_4:+29151494 Msa0497060:CDS
TATAGGGGAGATGGAGGAGA+TGG 0.574917 3_4:+29152034 Msa0497060:CDS
GCAAGAGGTCTTGGAAGCAG+AGG 0.579927 3_4:+29153485 Msa0497060:intron
ATATATGGGATGGGATAGAG+TGG 0.583708 3_4:-29150761 None:intergenic
TCTACTAGAATTGCCATCAG+TGG 0.584764 3_4:-29151507 None:intergenic
CAGAGAAGCTCTGTGGCGTG+AGG 0.585728 3_4:+29153509 Msa0497060:CDS
GAAACATATAGGGGAGATGG+AGG 0.597630 3_4:+29152028 Msa0497060:CDS
GAAAGAGGGTAGAGTTTGAA+GGG 0.602642 3_4:-29151031 None:intergenic
AGAAGCAGCAAAGAAGGAGG+AGG 0.609366 3_4:+29153581 Msa0497060:CDS
CTGCAATGACCTGTGAAAGA+GGG 0.628798 3_4:-29151045 None:intergenic
ATTCTAGTAGAACAATTGGA+AGG 0.631796 3_4:+29151519 Msa0497060:CDS
TGGAAACTGGATATATGAGA+AGG 0.633434 3_4:+29152060 Msa0497060:CDS
TCCAACAAATTGGATTTGCG+CGG 0.637195 3_4:-29150695 None:intergenic
GTGGCGTGAGGAGTTGATTG+AGG 0.647639 3_4:+29153521 Msa0497060:CDS
GAAGCATGCACATACTTGAA+GGG 0.648852 3_4:+29150716 Msa0497060:exon
TACGATTCAGAAACATATAG+GGG 0.649546 3_4:+29152019 Msa0497060:CDS
TGAAGAAGCAGCAAAGAAGG+AGG 0.658434 3_4:+29153578 Msa0497060:CDS
CAGAGGCCAGAGAAGCTCTG+TGG 0.665622 3_4:+29153502 Msa0497060:CDS
GCATGCACATACTTGAAGGG+TGG 0.681802 3_4:+29150719 Msa0497060:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATATAAACTGAAAA+TGG - chr3_4:29151403-29151422 None:intergenic 10.0%
!!! ATTTTCAGTTTATATTTTAA+TGG + chr3_4:29151402-29151421 Msa0497060:intron 10.0%
!!! TTTTAAATTTGATTGTTTAT+TGG + chr3_4:29151799-29151818 Msa0497060:intron 10.0%
!!! TTTTTTATATGATTTTATGT+TGG + chr3_4:29151942-29151961 Msa0497060:intron 10.0%
!!! TATCAAGTTTTTTTTTTTTA+GGG - chr3_4:29152843-29152862 None:intergenic 10.0%
!!! ATATCAAGTTTTTTTTTTTT+AGG - chr3_4:29152844-29152863 None:intergenic 10.0%
!! ATGAATATATGAATTGAAAA+CGG - chr3_4:29150866-29150885 None:intergenic 15.0%
!!! ACAAATTTTTGCTTATATTT+TGG + chr3_4:29151713-29151732 Msa0497060:intron 15.0%
!!! CAAATTTTTGCTTATATTTT+GGG + chr3_4:29151714-29151733 Msa0497060:intron 15.0%
!!! AATAATACATTTTTGACAAA+GGG - chr3_4:29151760-29151779 None:intergenic 15.0%
!!! AAATAATACATTTTTGACAA+AGG - chr3_4:29151761-29151780 None:intergenic 15.0%
!!! GATATTTTTTTCATTGATTT+AGG - chr3_4:29152670-29152689 None:intergenic 15.0%
!!! AAAATATTGAGTTTAGAATT+TGG - chr3_4:29153046-29153065 None:intergenic 15.0%
!!! GTTTTTTTTTAAAAGCAAAT+TGG + chr3_4:29153279-29153298 Msa0497060:intron 15.0%
!! TATGTATATACATAATAATG+AGG - chr3_4:29153670-29153689 None:intergenic 15.0%
!!! CTAATCTTGTAATTTTTTTA+AGG + chr3_4:29153843-29153862 Msa0497060:three_prime_UTR 15.0%
!! AAAATGGAATGAAAATGATA+AGG - chr3_4:29150935-29150954 None:intergenic 20.0%
!!! TTATCAATCTTTAATTTCCA+TGG + chr3_4:29151194-29151213 Msa0497060:intron 20.0%
!! TAATTTCCATGGATAATTAT+TGG + chr3_4:29151205-29151224 Msa0497060:intron 20.0%
!! AATTTCCATGGATAATTATT+GGG + chr3_4:29151206-29151225 Msa0497060:intron 20.0%
!! TCTCTTTGTATTTGTAAATA+AGG + chr3_4:29151425-29151444 Msa0497060:intron 20.0%
!! TGAACAAAAGTTAATGTATT+TGG - chr3_4:29151694-29151713 None:intergenic 20.0%
!! TAACATGTTTAACATGATTT+AGG + chr3_4:29151988-29152007 Msa0497060:intron 20.0%
!!! TAGATACTATACTTTGAAAA+GGG + chr3_4:29152244-29152263 Msa0497060:intron 20.0%
!! AAAAAAATATCGACATCATT+TGG + chr3_4:29152679-29152698 Msa0497060:intron 20.0%
!!! TTTTTTTTGTTACAACTTAG+AGG - chr3_4:29152912-29152931 None:intergenic 20.0%
!! TATACATCAAATATTAGAAG+AGG + chr3_4:29153201-29153220 Msa0497060:intron 20.0%
!!! TTTTCTTAAAATAAATGGAC+AGG - chr3_4:29153353-29153372 None:intergenic 20.0%
!!! AAGGCTTTTCTTAAAATAAA+TGG - chr3_4:29153358-29153377 None:intergenic 20.0%
!!! GGAATTTAAACATGTATTTT+AGG - chr3_4:29153384-29153403 None:intergenic 20.0%
!! ATTCAAAATGCAAAATATCA+TGG - chr3_4:29153441-29153460 None:intergenic 20.0%
!! AATGTACTGTTATTAAACTA+CGG + chr3_4:29153723-29153742 Msa0497060:three_prime_UTR 20.0%
! TTATGGTCCTTATGATATAT+GGG - chr3_4:29150778-29150797 None:intergenic 25.0%
! ATTATGGTCCTTATGATATA+TGG - chr3_4:29150779-29150798 None:intergenic 25.0%
! GTAAAAAGGAGTTGAAATTA+TGG - chr3_4:29150795-29150814 None:intergenic 25.0%
! AACAAAACGATTTACAAGAT+TGG + chr3_4:29150900-29150919 Msa0497060:CDS 25.0%
! GTGAATCAAAAGAGATAAAA+TGG - chr3_4:29150951-29150970 None:intergenic 25.0%
!! CAATTGGATTGAATTTTCAA+AGG + chr3_4:29151239-29151258 Msa0497060:intron 25.0%
! ACTAGAAGAAGTTTAAATGT+CGG + chr3_4:29151262-29151281 Msa0497060:intron 25.0%
!!! AGTTTTCTGCTAGTTTTTAT+AGG + chr3_4:29151367-29151386 Msa0497060:intron 25.0%
!! TTTGTAAATAAGGTGTTAGA+TGG + chr3_4:29151435-29151454 Msa0497060:intron 25.0%
! TTATAACCGAGAAAACAATT+TGG + chr3_4:29151553-29151572 Msa0497060:CDS 25.0%
!!! CTCATTTTTGCTTACATTTT+GGG - chr3_4:29151637-29151656 None:intergenic 25.0%
!!! ACTCATTTTTGCTTACATTT+TGG - chr3_4:29151638-29151657 None:intergenic 25.0%
!!! TTTTTGCTTATATTTTGGGA+CGG + chr3_4:29151718-29151737 Msa0497060:intron 25.0%
!! ATGTTTCTGAATCGTAATAT+GGG - chr3_4:29152015-29152034 None:intergenic 25.0%
!! TATGTTTCTGAATCGTAATA+TGG - chr3_4:29152016-29152035 None:intergenic 25.0%
! ATTACGATTCAGAAACATAT+AGG + chr3_4:29152017-29152036 Msa0497060:CDS 25.0%
! TTACGATTCAGAAACATATA+GGG + chr3_4:29152018-29152037 Msa0497060:CDS 25.0%
!! GTAGATACTATACTTTGAAA+AGG + chr3_4:29152243-29152262 Msa0497060:intron 25.0%
!!! ATACTTTGAAAAGGGATTTT+AGG + chr3_4:29152252-29152271 Msa0497060:intron 25.0%
!!! AAAAGGGATTTTAGGTAAAA+TGG + chr3_4:29152260-29152279 Msa0497060:intron 25.0%
! CACATGTTAAAATACCAAAA+GGG - chr3_4:29152526-29152545 None:intergenic 25.0%
! TCACATGTTAAAATACCAAA+AGG - chr3_4:29152527-29152546 None:intergenic 25.0%
!! CAAAAACACGATATATTTTG+AGG + chr3_4:29152796-29152815 Msa0497060:intron 25.0%
!! GTGAATTTGGTAATTATCAA+TGG - chr3_4:29152981-29153000 None:intergenic 25.0%
! TGATGTATAAGATAATCGTT+AGG - chr3_4:29153190-29153209 None:intergenic 25.0%
! ATATGATATAGAAGAGAGTT+TGG - chr3_4:29153227-29153246 None:intergenic 25.0%
! AACTCTCTTCTATATCATAT+AGG + chr3_4:29153227-29153246 Msa0497060:intron 25.0%
!!! AAACATGTATTTTAGGAAGA+AGG - chr3_4:29153377-29153396 None:intergenic 25.0%
!! ATATTTTGCATTTTGAATCG+TGG + chr3_4:29153443-29153462 Msa0497060:intron 25.0%
! AAATAGAACAAAAAGTTGGA+GGG + chr3_4:29153544-29153563 Msa0497060:CDS 25.0%
!! CAAAAAGTGCTCAAGTAAAA+AGG - chr3_4:29150809-29150828 None:intergenic 30.0%
AGTTGTTACTACTTTCTCTT+AGG - chr3_4:29151296-29151315 None:intergenic 30.0%
ATTCTAGTAGAACAATTGGA+AGG + chr3_4:29151519-29151538 Msa0497060:CDS 30.0%
! AAGATGCCAAATTGTTTTCT+CGG - chr3_4:29151562-29151581 None:intergenic 30.0%
!! AGTCAACATAAGTTGATGTA+TGG + chr3_4:29151655-29151674 Msa0497060:intron 30.0%
GTACATAATGTTCACTGTTT+GGG + chr3_4:29151849-29151868 Msa0497060:CDS 30.0%
TACATAATGTTCACTGTTTG+GGG + chr3_4:29151850-29151869 Msa0497060:CDS 30.0%
!!! AGAAAAGTGTTTTACCTTCA+TGG - chr3_4:29151893-29151912 None:intergenic 30.0%
TACGATTCAGAAACATATAG+GGG + chr3_4:29152019-29152038 Msa0497060:CDS 30.0%
CTTACTTTAGTATACCTACA+AGG - chr3_4:29152158-29152177 None:intergenic 30.0%
TGTAGGTATACTAAAGTAAG+AGG + chr3_4:29152158-29152177 Msa0497060:intron 30.0%
!!! CGTTGTTAGCATTTTTTCTA+AGG + chr3_4:29152347-29152366 Msa0497060:intron 30.0%
! AATTGAGTAAACAACCCTTT+TGG + chr3_4:29152509-29152528 Msa0497060:intron 30.0%
! TCATGTTAACATGTGTTTTG+AGG + chr3_4:29152602-29152621 Msa0497060:intron 30.0%
GGATACATGATAGATGATAA+AGG + chr3_4:29152623-29152642 Msa0497060:intron 30.0%
AAAGGCAACAACACTTTAAT+CGG + chr3_4:29152641-29152660 Msa0497060:intron 30.0%
AAATATCGACATCATTTGGT+CGG + chr3_4:29152683-29152702 Msa0497060:intron 30.0%
! TTTTGTTACAACTTAGAGGT+TGG - chr3_4:29152908-29152927 None:intergenic 30.0%
GAATTCAATCATTAGCTAAC+GGG - chr3_4:29152949-29152968 None:intergenic 30.0%
CGAATTCAATCATTAGCTAA+CGG - chr3_4:29152950-29152969 None:intergenic 30.0%
!! ATGAGTTGATCATGTGAATT+TGG - chr3_4:29152994-29153013 None:intergenic 30.0%
AATGACAGAAAATAGAAGTG+TGG - chr3_4:29153405-29153424 None:intergenic 30.0%
AATGCAAAATATCATGGATG+TGG - chr3_4:29153435-29153454 None:intergenic 30.0%
!!! TTGAATCGTGGCTATTTTTA+TGG + chr3_4:29153455-29153474 Msa0497060:intron 30.0%
! TTTTATGGTTATACAGCAAG+AGG + chr3_4:29153470-29153489 Msa0497060:intron 30.0%
GAGGAAATAGAACAAAAAGT+TGG + chr3_4:29153540-29153559 Msa0497060:CDS 30.0%
GAAATAGAACAAAAAGTTGG+AGG + chr3_4:29153543-29153562 Msa0497060:CDS 30.0%
! CATAATAATGAGGTATCACT+TGG - chr3_4:29153660-29153679 None:intergenic 30.0%
CACAATATAAATCAATGAGC+AGG + chr3_4:29153768-29153787 Msa0497060:three_prime_UTR 30.0%
ATCCCATCCCATATATCATA+AGG + chr3_4:29150768-29150787 Msa0497060:CDS 35.0%
GTCCTTATGATATATGGGAT+GGG - chr3_4:29150773-29150792 None:intergenic 35.0%
!! GCACTTTTTGTTCAAAACCA+TGG + chr3_4:29150819-29150838 Msa0497060:CDS 35.0%
!!! TGTTCTATTTTTTGCAGCCT+AGG + chr3_4:29151006-29151025 Msa0497060:intron 35.0%
TCCATGGATAATTATTGGGT+TGG + chr3_4:29151210-29151229 Msa0497060:intron 35.0%
TCCAACCCAATAATTATCCA+TGG - chr3_4:29151214-29151233 None:intergenic 35.0%
TTTACCAGATATTCCACTGA+TGG + chr3_4:29151494-29151513 Msa0497060:CDS 35.0%
GGCAATTCTAGTAGAACAAT+TGG + chr3_4:29151515-29151534 Msa0497060:CDS 35.0%
GGTACATAATGTTCACTGTT+TGG + chr3_4:29151848-29151867 Msa0497060:CDS 35.0%
! CTTATTCTTTGGTTCCATGA+AGG + chr3_4:29151876-29151895 Msa0497060:CDS 35.0%
TGGAAACTGGATATATGAGA+AGG + chr3_4:29152060-29152079 Msa0497060:CDS 35.0%
AATACTAGAAGCCACAAACA+AGG + chr3_4:29152118-29152137 Msa0497060:intron 35.0%
ATACTAGAAGCCACAAACAA+GGG + chr3_4:29152119-29152138 Msa0497060:intron 35.0%
!! AGTAAGAGGAGTGTTATGAA+CGG + chr3_4:29152172-29152191 Msa0497060:intron 35.0%
TGCTACATGAAACATTCATG+TGG - chr3_4:29152291-29152310 None:intergenic 35.0%
!!! GCATTGATTTTTTCCAGATG+AGG - chr3_4:29152444-29152463 None:intergenic 35.0%
!!! GAACCCAGATTTTTTCACTT+GGG + chr3_4:29152722-29152741 Msa0497060:intron 35.0%
ACACCCAAGTGAAAAAATCT+GGG - chr3_4:29152728-29152747 None:intergenic 35.0%
!! ACTTAGAGGTTGGTAAACAT+AGG - chr3_4:29152898-29152917 None:intergenic 35.0%
!!! GGAGTTTTATTGTGTGCAAT+CGG - chr3_4:29153169-29153188 None:intergenic 35.0%
!! TGGTCAATTGATGGACTAAA+AGG - chr3_4:29153640-29153659 None:intergenic 35.0%
TGTGCATGCTTCCAACAAAT+TGG - chr3_4:29150708-29150727 None:intergenic 40.0%
GAAGCATGCACATACTTGAA+GGG + chr3_4:29150716-29150735 Msa0497060:exon 40.0%
ATATATGGGATGGGATAGAG+TGG - chr3_4:29150764-29150783 None:intergenic 40.0%
GGTCCTTATGATATATGGGA+TGG - chr3_4:29150774-29150793 None:intergenic 40.0%
GGTGAAACCAATGATAGCTT+CGG - chr3_4:29150845-29150864 None:intergenic 40.0%
GAAAGAGGGTAGAGTTTGAA+GGG - chr3_4:29151034-29151053 None:intergenic 40.0%
TGAAAGAGGGTAGAGTTTGA+AGG - chr3_4:29151035-29151054 None:intergenic 40.0%
GCATCTATGTGCAAAGTGAA+TGG + chr3_4:29151471-29151490 Msa0497060:CDS 40.0%
ATTGCCATCAGTGGAATATC+TGG - chr3_4:29151501-29151520 None:intergenic 40.0%
TCTACTAGAATTGCCATCAG+TGG - chr3_4:29151510-29151529 None:intergenic 40.0%
AGCGTCTGCAAAGGATTAAA+GGG - chr3_4:29151827-29151846 None:intergenic 40.0%
AAGCGTCTGCAAAGGATTAA+AGG - chr3_4:29151828-29151847 None:intergenic 40.0%
TTTAATCCTTTGCAGACGCT+TGG + chr3_4:29151827-29151846 Msa0497060:intron 40.0%
!! GTTTGGGGAGTCTTATTCTT+TGG + chr3_4:29151865-29151884 Msa0497060:CDS 40.0%
TCAGAAACATATAGGGGAGA+TGG + chr3_4:29152025-29152044 Msa0497060:CDS 40.0%
GAGCACAAATCAAACCTTGT+AGG + chr3_4:29152141-29152160 Msa0497060:intron 40.0%
ACTTTAGTAGCCCAATAGCA+TGG + chr3_4:29152382-29152401 Msa0497060:intron 40.0%
! GAGGAACTTGTGGGTTATAT+GGG - chr3_4:29152425-29152444 None:intergenic 40.0%
! TGAGGAACTTGTGGGTTATA+TGG - chr3_4:29152426-29152445 None:intergenic 40.0%
TTTCCAGATGAGGAACTTGT+GGG - chr3_4:29152434-29152453 None:intergenic 40.0%
! TTTTCCAGATGAGGAACTTG+TGG - chr3_4:29152435-29152454 None:intergenic 40.0%
!!! CGAACCCAGATTTTTTCACT+TGG + chr3_4:29152721-29152740 Msa0497060:intron 40.0%
CACACCCAAGTGAAAAAATC+TGG - chr3_4:29152729-29152748 None:intergenic 40.0%
ACTTGAAGAAGCAGCAAAGA+AGG + chr3_4:29153575-29153594 Msa0497060:CDS 40.0%
GGTATCACTTGGTCAATTGA+TGG - chr3_4:29153649-29153668 None:intergenic 40.0%
! GGAAGCATGCACATACTTGA+AGG + chr3_4:29150715-29150734 Msa0497060:exon 45.0%
CAAACTCTACCCTCTTTCAC+AGG + chr3_4:29151036-29151055 Msa0497060:CDS 45.0%
CTGCAATGACCTGTGAAAGA+GGG - chr3_4:29151048-29151067 None:intergenic 45.0%
!! ATTGGGTTGGATAGCGCAAT+TGG + chr3_4:29151223-29151242 Msa0497060:intron 45.0%
TATGTACCAAGCGTCTGCAA+AGG - chr3_4:29151836-29151855 None:intergenic 45.0%
GAAACATATAGGGGAGATGG+AGG + chr3_4:29152028-29152047 Msa0497060:CDS 45.0%
! GATTTGTGCTCCCTTGTTTG+TGG - chr3_4:29152132-29152151 None:intergenic 45.0%
TAACCCACAAGTTCCTCATC+TGG + chr3_4:29152428-29152447 Msa0497060:intron 45.0%
GGTTATACAGCAAGAGGTCT+TGG + chr3_4:29153476-29153495 Msa0497060:intron 45.0%
TGAAGAAGCAGCAAAGAAGG+AGG + chr3_4:29153578-29153597 Msa0497060:CDS 45.0%
GCATGCACATACTTGAAGGG+TGG + chr3_4:29150719-29150738 Msa0497060:exon 50.0%
ACCATGGCCGAAGCTATCAT+TGG + chr3_4:29150835-29150854 Msa0497060:CDS 50.0%
ACCAATGATAGCTTCGGCCA+TGG - chr3_4:29150839-29150858 None:intergenic 50.0%
!! GTAGAGTTTGAAGGGTGCCT+AGG - chr3_4:29151026-29151045 None:intergenic 50.0%
CCTGCAATGACCTGTGAAAG+AGG - chr3_4:29151049-29151068 None:intergenic 50.0%
CCTCTTTCACAGGTCATTGC+AGG + chr3_4:29151046-29151065 Msa0497060:CDS 50.0%
TATAGGGGAGATGGAGGAGA+TGG + chr3_4:29152034-29152053 Msa0497060:CDS 50.0%
GTTCGTTGGGCCATGCTATT+GGG - chr3_4:29152395-29152414 None:intergenic 50.0%
TCGGTGGTTGTTGGACTATC+AGG - chr3_4:29153114-29153133 None:intergenic 50.0%
GTTGGTACATCGGTGGTTGT+TGG - chr3_4:29153123-29153142 None:intergenic 50.0%
AGAAGCAGCAAAGAAGGAGG+AGG + chr3_4:29153581-29153600 Msa0497060:CDS 50.0%
! GAGGAGATGGCACTGGAAAC+TGG + chr3_4:29152047-29152066 Msa0497060:CDS 55.0%
GGTTCGTTGGGCCATGCTAT+TGG - chr3_4:29152396-29152415 None:intergenic 55.0%
TATGGGCGCACAGGTTCGTT+GGG - chr3_4:29152408-29152427 None:intergenic 55.0%
ATATGGGCGCACAGGTTCGT+TGG - chr3_4:29152409-29152428 None:intergenic 55.0%
! TGTGGGTTATATGGGCGCAC+AGG - chr3_4:29152417-29152436 None:intergenic 55.0%
ACCACCGATGTACCAACTGC+AGG + chr3_4:29153126-29153145 Msa0497060:intron 55.0%
! CTCGCCTGCAGTTGGTACAT+CGG - chr3_4:29153133-29153152 None:intergenic 55.0%
GACAATCTCTCGCCTGCAGT+TGG - chr3_4:29153141-29153160 None:intergenic 55.0%
GCAAGAGGTCTTGGAAGCAG+AGG + chr3_4:29153485-29153504 Msa0497060:intron 55.0%
! GTGGCGTGAGGAGTTGATTG+AGG + chr3_4:29153521-29153540 Msa0497060:CDS 55.0%
GGAGATGGAGGAGATGGCAC+TGG + chr3_4:29152040-29152059 Msa0497060:CDS 60.0%
! GCCTGCAGTTGGTACATCGG+TGG - chr3_4:29153130-29153149 None:intergenic 60.0%
CAGAGGCCAGAGAAGCTCTG+TGG + chr3_4:29153502-29153521 Msa0497060:CDS 60.0%
CTCACGCCACAGAGCTTCTC+TGG - chr3_4:29153511-29153530 None:intergenic 60.0%
CAGAGAAGCTCTGTGGCGTG+AGG + chr3_4:29153509-29153528 Msa0497060:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 29150698 29153871 29150698 ID=Msa0497060;Name=Msa0497060
chr3_4 mRNA 29150698 29153871 29150698 ID=Msa0497060-mRNA-1;Parent=Msa0497060;Name=Msa0497060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=23|1|1|1|1|1|6|254|221
chr3_4 exon 29150698 29150921 29150698 ID=Msa0497060-mRNA-1:exon:6693;Parent=Msa0497060-mRNA-1
chr3_4 exon 29151023 29151067 29151023 ID=Msa0497060-mRNA-1:exon:6694;Parent=Msa0497060-mRNA-1
chr3_4 exon 29151447 29151606 29151447 ID=Msa0497060-mRNA-1:exon:6695;Parent=Msa0497060-mRNA-1
chr3_4 exon 29151842 29151897 29151842 ID=Msa0497060-mRNA-1:exon:6696;Parent=Msa0497060-mRNA-1
chr3_4 exon 29152010 29152081 29152010 ID=Msa0497060-mRNA-1:exon:6697;Parent=Msa0497060-mRNA-1
chr3_4 exon 29153486 29153871 29153486 ID=Msa0497060-mRNA-1:exon:6698;Parent=Msa0497060-mRNA-1
chr3_4 five_prime_UTR 29150698 29150720 29150698 ID=Msa0497060-mRNA-1:five_prime_utr;Parent=Msa0497060-mRNA-1
chr3_4 CDS 29150721 29150921 29150721 ID=Msa0497060-mRNA-1:cds;Parent=Msa0497060-mRNA-1
chr3_4 CDS 29151023 29151067 29151023 ID=Msa0497060-mRNA-1:cds;Parent=Msa0497060-mRNA-1
chr3_4 CDS 29151447 29151606 29151447 ID=Msa0497060-mRNA-1:cds;Parent=Msa0497060-mRNA-1
chr3_4 CDS 29151842 29151897 29151842 ID=Msa0497060-mRNA-1:cds;Parent=Msa0497060-mRNA-1
chr3_4 CDS 29152010 29152081 29152010 ID=Msa0497060-mRNA-1:cds;Parent=Msa0497060-mRNA-1
chr3_4 CDS 29153486 29153617 29153486 ID=Msa0497060-mRNA-1:cds;Parent=Msa0497060-mRNA-1
chr3_4 three_prime_UTR 29153618 29153871 29153618 ID=Msa0497060-mRNA-1:three_prime_utr;Parent=Msa0497060-mRNA-1
Gene Sequence

>Msa0497060

ATGCACATACTTGAAGGGTGGTTCTTCATTCTACTCTTATCCACTCTATCCCATCCCATATATCATAAGGACCATAATTTCAACTCCTTTTTACTTGAGCACTTTTTGTTCAAAACCATGGCCGAAGCTATCATTGGTTTCACCGTTTTCAATTCATATATTCATAGCTCATGTCTTCAAACAAAACGATTTACAAGATTGCCTAGGCACCCTTCAAACTCTACCCTCTTTCACAGGTCATTGCAGGTGTTAGATGGAAAAATAAAAAGAGCATCTATGTGCAAAGTGAATGGTTTACCAGATATTCCACTGATGGCAATTCTAGTAGAACAATTGGAAGGACAGAGAGATCTTATAACCGAGAAAACAATTTGGCATCTTAGTGATCAGCAAATAAAGAATGTTTACGCTTGGTACATAATGTTCACTGTTTGGGGAGTCTTATTCTTTGGTTCCATGAAGGACCCATATTACGATTCAGAAACATATAGGGGAGATGGAGGAGATGGCACTGGAAACTGGATATATGAGAAGCAAGAGGTCTTGGAAGCAGAGGCCAGAGAAGCTCTGTGGCGTGAGGAGTTGATTGAGGAAATAGAACAAAAAGTTGGAGGGTTGAGAGAACTTGAAGAAGCAGCAAAGAAGGAGGAGGAACTTGTTAAATGA

Protein sequence

>Msa0497060

MHILEGWFFILLLSTLSHPIYHKDHNFNSFLLEHFLFKTMAEAIIGFTVFNSYIHSSCLQTKRFTRLPRHPSNSTLFHRSLQVLDGKIKRASMCKVNGLPDIPLMAILVEQLEGQRDLITEKTIWHLSDQQIKNVYAWYIMFTVWGVLFFGSMKDPYYDSETYRGDGGDGTGNWIYEKQEVLEAEAREALWREELIEEIEQKVGGLRELEEAAKKEEELVK*