AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0195670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195670 MtrunA17_Chr2g0286841 92.105 342 23 1 1 338 1 342 0.0 563
Msa0195670 MtrunA17_Chr4g0066521 60.857 350 118 4 2 338 1 344 5.22e-129 372
Msa0195670 MtrunA17_Chr8g0358391 39.650 343 171 7 10 338 22 342 5.83e-61 198
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195670 AT4G15545.1 53.959 341 130 9 6 338 16 337 8.84e-104 308
Msa0195670 AT1G16520.1 37.574 338 183 5 10 338 7 325 5.69e-62 201
Msa0195670 AT1G56080.1 37.644 348 153 8 7 334 4 307 7.04e-57 187

Find 83 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCCTGCATCAGAATTAT+TGG 0.253765 2_1:+12526174 None:intergenic
AAGAAAGCTGATGAGATCTT+TGG 0.305279 2_1:-12525053 Msa0195670:CDS
TAATGCGAGGAGTCGTAGTT+TGG 0.347026 2_1:+12525936 None:intergenic
TGTTCATTAAATTGATTCCT+AGG 0.365398 2_1:-12524979 Msa0195670:exon
TTCAGCAAGTGCAAGCTTAT+CGG 0.366407 2_1:+12527194 None:intergenic
CATGGCAGAGCTGGAAGCTC+AGG 0.384727 2_1:-12527250 Msa0195670:CDS
AACAAATAATTATTGAAAGT+TGG 0.395684 2_1:+12525737 None:intergenic
GATCTGTATACTATATTTGA+AGG 0.396057 2_1:-12525017 Msa0195670:CDS
CGGTTTCCCTTCAAATTGAC+AGG 0.406170 2_1:-12525832 Msa0195670:CDS
GCTGAAGTAGAGGAAATATC+AGG 0.423713 2_1:+12524948 None:intergenic
TGCAGCTATGTTACATAGTC+AGG 0.425161 2_1:-12526378 Msa0195670:CDS
AGACGAGCTCATGGCAGAGC+TGG 0.426103 2_1:-12527259 Msa0195670:CDS
AGAAAGCTGATGAGATCTTT+GGG 0.427930 2_1:-12525052 Msa0195670:CDS
ATTAACATGTAAATCATAGT+TGG 0.445931 2_1:+12524916 None:intergenic
AGCTCAGGCAGAGCCTCTCC+AGG 0.451645 2_1:-12527235 Msa0195670:CDS
AATGCGAGGAGTCGTAGTTT+GGG 0.451995 2_1:+12525937 None:intergenic
GCAGGTTTAGATGTTCTTGA+TGG 0.455452 2_1:+12525872 None:intergenic
GTTATAGGAGAAATTGTTGA+AGG 0.457411 2_1:-12527047 Msa0195670:intron
AAGAAGTCCTGTCAATTTGA+AGG 0.461711 2_1:+12525825 None:intergenic
GATACAGATGCAGAAACAAT+AGG 0.464230 2_1:+12525896 None:intergenic
GATGATGCTTGAGATCTTCC+AGG 0.470618 2_1:+12525986 None:intergenic
CGTTTGTCTTATGAGCAGTT+TGG 0.470820 2_1:-12525235 Msa0195670:CDS
GTACAGTGAGGAAGCTCAGT+AGG 0.476497 2_1:-12527006 Msa0195670:CDS
GGAGAGGAATGCAGAAGCAT+TGG 0.489445 2_1:+12527562 None:intergenic
CAAACCAATAATTCTGATGC+AGG 0.498610 2_1:-12526178 Msa0195670:CDS
TTATTGGTTTGCATTGAAGA+AGG 0.504066 2_1:+12526190 None:intergenic
ACTGGTTCAATGTCTAGCTC+TGG 0.504686 2_1:-12525788 Msa0195670:CDS
GTTTGCATTGAAGAAGGCCT+AGG 0.509761 2_1:+12526196 None:intergenic
TGCACTTGCTGAACAAGATA+AGG 0.510112 2_1:-12527184 Msa0195670:intron
AGGGAAACCGCATGGCGCCT+TGG 0.511504 2_1:+12525845 None:intergenic
CGGCTTCAGAAAGAGCAGCC+TGG 0.513407 2_1:+12527217 None:intergenic
AGAACTTGCAGCAACTCCTC+GGG 0.515170 2_1:+12527402 None:intergenic
ATTAGTTATTATTACAGTCA+TGG 0.521790 2_1:+12524872 None:intergenic
CGTGTTGACACGTGTTGAAA+GGG 0.523596 2_1:+12527326 None:intergenic
ACTCCTCGCATTAGTCCTCC+TGG 0.526413 2_1:-12525926 Msa0195670:CDS
GTAGAGCAGAAACTTCTGAT+TGG 0.533919 2_1:+12527301 None:intergenic
TAGAACTTGCAGCAACTCCT+CGG 0.534065 2_1:+12527401 None:intergenic
TTCCCACAAACAAACAAAAG+AGG 0.537066 2_1:-12525182 Msa0195670:intron
AGAAGTCCTGTCAATTTGAA+GGG 0.540242 2_1:+12525826 None:intergenic
AAGATGCTGCATTGCCACCT+AGG 0.541569 2_1:-12526213 Msa0195670:CDS
TAACTAATAAGTTTGAAATG+AGG 0.554083 2_1:-12524857 Msa0195670:three_prime_UTR
CAAACTGCTCATAAGACAAA+CGG 0.554300 2_1:+12525236 None:intergenic
CATCTAAACCTGCGTCTCCA+AGG 0.554770 2_1:-12525862 Msa0195670:CDS
GCCACATCGAGTTGCTCGAA+AGG 0.555075 2_1:+12527369 None:intergenic
TTATTGAAAGTTGGACATTG+AGG 0.558245 2_1:+12525746 None:intergenic
AATATCAGGTATTACAACCT+AGG 0.559023 2_1:+12524962 None:intergenic
ACCACTTCCACATCTCAGCT+TGG 0.564003 2_1:-12526350 Msa0195670:CDS
ACTTCCACATCTCAGCTTGG+AGG 0.564335 2_1:-12526347 Msa0195670:intron
TGTAACATAGCTGCAATGTT+GGG 0.565145 2_1:+12526386 None:intergenic
TCAATGTCTAGCTCTGGCAC+AGG 0.576331 2_1:-12525782 Msa0195670:CDS
ATGTAACATAGCTGCAATGT+TGG 0.581127 2_1:+12526385 None:intergenic
GCTCAGTAGGGATGTCTCCA+AGG 0.581456 2_1:-12526993 Msa0195670:intron
TCAGAAAGAGCAGCCTGGAG+AGG 0.582682 2_1:+12527222 None:intergenic
GCGTGTTGACACGTGTTGAA+AGG 0.583885 2_1:+12527325 None:intergenic
TACAGTGAGGAAGCTCAGTA+GGG 0.584079 2_1:-12527005 Msa0195670:CDS
TCCAAGCTGAGATGTGGAAG+TGG 0.584301 2_1:+12526349 None:intergenic
ATCGAGTTGCTCGAAAGGAT+CGG 0.586114 2_1:+12527374 None:intergenic
GCATGGCGCCTTGGAGACGC+AGG 0.586987 2_1:+12525854 None:intergenic
GAAACAATAGGAGGTGAACC+AGG 0.588601 2_1:+12525908 None:intergenic
GCTAGACATTGAACCAGTAG+AGG 0.593995 2_1:+12525793 None:intergenic
TGCAGGAAATTCCTTTGCAG+AGG 0.596634 2_1:-12526161 Msa0195670:CDS
TCCTTTCGAGCAACTCGATG+TGG 0.598793 2_1:-12527370 Msa0195670:CDS
CAATTTGAAGGGAAACCGCA+TGG 0.598917 2_1:+12525837 None:intergenic
AGTACCTCCAAGCTGAGATG+TGG 0.600275 2_1:+12526343 None:intergenic
AGAGAAGAACATGTTGGTGG+CGG 0.608636 2_1:-12527451 Msa0195670:exon
AGCAAGTGCAAGCTTATCGG+CGG 0.608654 2_1:+12527197 None:intergenic
GCAGAGGATCGTCAATCAGA+TGG 0.614191 2_1:-12526145 Msa0195670:intron
ACTTATGCAATCACTTCAAG+AGG 0.616703 2_1:-12526853 Msa0195670:CDS
AAGAGAGAAGAACATGTTGG+TGG 0.623218 2_1:-12527454 Msa0195670:exon
TGATTGACGATCCTCTGCAA+AGG 0.623637 2_1:+12526150 None:intergenic
GACACGTGTTGAAAGGGCAA+TGG 0.633302 2_1:+12527332 None:intergenic
TGCATTGAAGAAGGCCTAGG+TGG 0.633843 2_1:+12526199 None:intergenic
TGCGTCTCCAAGGCGCCATG+CGG 0.654382 2_1:-12525852 Msa0195670:CDS
ACGTGTTGAAAGGGCAATGG+AGG 0.665793 2_1:+12527335 None:intergenic
ACAGATGCAGAAACAATAGG+AGG 0.674096 2_1:+12525899 None:intergenic
GCAACTCCTCGGGAATATCG+AGG 0.680265 2_1:+12527412 None:intergenic
ATTGGAACGTGATAAGACAA+TGG 0.689309 2_1:+12527580 None:intergenic
TTCAAACCTCGATATTCCCG+AGG 0.693018 2_1:-12527418 Msa0195670:CDS
AGTTGCTCGAAAGGATCGGA+CGG 0.696761 2_1:+12527378 None:intergenic
ATGTTGGTGGCGGAATTGAG+TGG 0.699161 2_1:-12527441 Msa0195670:CDS
GAACCAGGAGGACTAATGCG+AGG 0.700895 2_1:+12525923 None:intergenic
CTTCACTTTCTAGTACAGTG+AGG 0.701338 2_1:-12527018 Msa0195670:CDS
ACAATAGGAGGTGAACCAGG+AGG 0.746649 2_1:+12525911 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTAAATTTTAATTTGTTT+TGG - chr2_1:12525359-12525378 Msa0195670:intron 10.0%
!!! GAATTATATGTAATTAATTT+TGG + chr2_1:12526166-12526185 None:intergenic 10.0%
!! GTATATATGTATATAAATTA+AGG - chr2_1:12526769-12526788 Msa0195670:intron 10.0%
!!! TTATGATTTTATTCATAGTT+TGG + chr2_1:12524908-12524927 None:intergenic 15.0%
!!! TTTTTCTACTTTCTTTTAAT+TGG + chr2_1:12524971-12524990 None:intergenic 15.0%
!!! ATTTGCATGAAATTTTTATT+TGG - chr2_1:12525325-12525344 Msa0195670:intron 15.0%
!!! AATTTTCATTTTAGTAAATG+AGG - chr2_1:12525508-12525527 Msa0195670:intron 15.0%
!! AAATATTAATAACAACTTAC+AGG + chr2_1:12525630-12525649 None:intergenic 15.0%
!! ATTAATTAAACCAAAACTAA+TGG + chr2_1:12525890-12525909 None:intergenic 15.0%
!! TAATTAATAAAAATTAACCC+TGG - chr2_1:12525902-12525921 Msa0195670:CDS 15.0%
!!! CAATTAAGCATTTTAAAAAA+TGG + chr2_1:12525934-12525953 None:intergenic 15.0%
!! AACAAATAATTATTGAAAGT+TGG + chr2_1:12526712-12526731 None:intergenic 15.0%
!! TATATGATCACTTTAATTAA+TGG - chr2_1:12526745-12526764 Msa0195670:intron 15.0%
!! GAGGTTAATTAATGTTATAA+TGG - chr2_1:12525527-12525546 Msa0195670:intron 20.0%
!! TTAATATGAATATATGCAGT+TGG - chr2_1:12525554-12525573 Msa0195670:intron 20.0%
!!! GGATTAATATTTTTCAATAG+AGG - chr2_1:12525682-12525701 Msa0195670:intron 20.0%
!! ATTCAAATATAGTTAACAAG+AGG - chr2_1:12525989-12526008 Msa0195670:CDS 20.0%
!! TGAGAACTAAATAAATCAAA+GGG + chr2_1:12526199-12526218 None:intergenic 20.0%
!! ATGAGAACTAAATAAATCAA+AGG + chr2_1:12526200-12526219 None:intergenic 20.0%
!! ATTAATCATCTAATTAATGC+AGG - chr2_1:12526339-12526358 Msa0195670:intron 20.0%
!! ACAAATGTTACCATAAAAAA+GGG + chr2_1:12527313-12527332 None:intergenic 20.0%
!! TACAAATGTTACCATAAAAA+AGG + chr2_1:12527314-12527333 None:intergenic 20.0%
!! ATTAACATGTAAATCATAGT+TGG + chr2_1:12527533-12527552 None:intergenic 20.0%
!! ATTAGTTATTATTACAGTCA+TGG + chr2_1:12527577-12527596 None:intergenic 20.0%
!!! TAACTAATAAGTTTGAAATG+AGG - chr2_1:12527589-12527608 Msa0195670:five_prime_UTR 20.0%
!! ATTTTATTCATAGTTTGGAG+AGG + chr2_1:12524903-12524922 None:intergenic 25.0%
! TTAATTTAGAAAACGGTTCA+CGG + chr2_1:12525295-12525314 None:intergenic 25.0%
! AAATTTCATGCAAATTGAAC+CGG + chr2_1:12525320-12525339 None:intergenic 25.0%
! GAGATTGTGTAAATTGTTAT+AGG - chr2_1:12525384-12525403 Msa0195670:intron 25.0%
! GAAAAATATTAATCCAGACA+AGG + chr2_1:12525677-12525696 None:intergenic 25.0%
!!! ATGCAATTACTTTTTTCAGT+AGG - chr2_1:12525739-12525758 Msa0195670:intron 25.0%
!!! TGCAATTACTTTTTTCAGTA+GGG - chr2_1:12525740-12525759 Msa0195670:CDS 25.0%
!! GTACTAAGTTCAAATTTTCT+TGG - chr2_1:12525847-12525866 Msa0195670:CDS 25.0%
!!! AGCATTTTAAAAAATGGAGA+AGG + chr2_1:12525928-12525947 None:intergenic 25.0%
!!! TTTGATTTTGACATGTAACA+TGG - chr2_1:12526013-12526032 Msa0195670:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - chr2_1:12526992-12527011 Msa0195670:intron 25.0%
! AACATGTAGAAATAAGTGAA+AGG + chr2_1:12527175-12527194 None:intergenic 25.0%
!!! TCTACATGTTTGTTATCATT+AGG - chr2_1:12527185-12527204 Msa0195670:CDS 25.0%
!!! TGCATTTTTAGCAAATGTTA+AGG - chr2_1:12527234-12527253 Msa0195670:CDS 25.0%
! CAAATGTTACCATAAAAAAG+GGG + chr2_1:12527312-12527331 None:intergenic 25.0%
! AATTTCACAAACACAACAAA+AGG + chr2_1:12527360-12527379 None:intergenic 25.0%
! GATCTGTATACTATATTTGA+AGG - chr2_1:12527429-12527448 Msa0195670:CDS 25.0%
!! TGTTCATTAAATTGATTCCT+AGG - chr2_1:12527467-12527486 Msa0195670:five_prime_UTR 25.0%
AAAAAGAGAGAAGAACATGT+TGG - chr2_1:12524989-12525008 Msa0195670:exon 30.0%
TAATTTAGAAAACGGTTCAC+GGG + chr2_1:12525294-12525313 None:intergenic 30.0%
! ACCGTTTTCTAAATTAAACC+CGG - chr2_1:12525298-12525317 Msa0195670:intron 30.0%
! ACCGGGTTTAATTTAGAAAA+CGG + chr2_1:12525302-12525321 None:intergenic 30.0%
AATTTCATGCAAATTGAACC+GGG + chr2_1:12525319-12525338 None:intergenic 30.0%
GTTATAGGAGAAATTGTTGA+AGG - chr2_1:12525399-12525418 Msa0195670:intron 30.0%
AAACCAAATTATTTGCACCT+TGG + chr2_1:12525473-12525492 None:intergenic 30.0%
ATATGAATATATGCAGTTGG+AGG - chr2_1:12525557-12525576 Msa0195670:intron 30.0%
!! CGTAAAATGACCATTAGTTT+TGG - chr2_1:12525877-12525896 Msa0195670:CDS 30.0%
! TTGACATGTAACATGGTTTT+TGG - chr2_1:12526020-12526039 Msa0195670:intron 30.0%
! TGGATCATGTTCTTTTCATT+TGG + chr2_1:12526146-12526165 None:intergenic 30.0%
TAAATCAAAGGGTTTATGTG+AGG + chr2_1:12526188-12526207 None:intergenic 30.0%
!! TTATTGGTTTGCATTGAAGA+AGG + chr2_1:12526259-12526278 None:intergenic 30.0%
ATTTCCTGCATCAGAATTAT+TGG + chr2_1:12526275-12526294 None:intergenic 30.0%
! TTCTTTTCGAAAAATGTAGC+TGG - chr2_1:12526436-12526455 Msa0195670:intron 30.0%
TTATTGAAAGTTGGACATTG+AGG + chr2_1:12526703-12526722 None:intergenic 30.0%
! CTTTTGCTTATAATAGTGAC+CGG - chr2_1:12527066-12527085 Msa0195670:intron 30.0%
AGTGAAAGGATTCAAAAGTT+AGG + chr2_1:12527161-12527180 None:intergenic 30.0%
!!! GTATACAGATCTTTGTTTTC+TGG + chr2_1:12527420-12527439 None:intergenic 30.0%
AATATCAGGTATTACAACCT+AGG + chr2_1:12527487-12527506 None:intergenic 30.0%
ATTGGAACGTGATAAGACAA+TGG + chr2_1:12524869-12524888 None:intergenic 35.0%
TCTCCAAGGTGCAAATAATT+TGG - chr2_1:12525467-12525486 Msa0195670:intron 35.0%
ACTTATGCAATCACTTCAAG+AGG - chr2_1:12525593-12525612 Msa0195670:intron 35.0%
ATACTGTTTATGACCTTGTC+TGG - chr2_1:12525661-12525680 Msa0195670:intron 35.0%
TTAAAAAATGGAGAAGGCCA+GGG + chr2_1:12525922-12525941 None:intergenic 35.0%
TTTAAAAAATGGAGAAGGCC+AGG + chr2_1:12525923-12525942 None:intergenic 35.0%
TGTAACATAGCTGCAATGTT+GGG + chr2_1:12526063-12526082 None:intergenic 35.0%
ATGTAACATAGCTGCAATGT+TGG + chr2_1:12526064-12526083 None:intergenic 35.0%
CAAACCAATAATTCTGATGC+AGG - chr2_1:12526268-12526287 Msa0195670:intron 35.0%
GATACAGATGCAGAAACAAT+AGG + chr2_1:12526553-12526572 None:intergenic 35.0%
AGAAGTCCTGTCAATTTGAA+GGG + chr2_1:12526623-12526642 None:intergenic 35.0%
AAGAAGTCCTGTCAATTTGA+AGG + chr2_1:12526624-12526643 None:intergenic 35.0%
! TCTTCAATGTTTTCCTCTAC+TGG - chr2_1:12526640-12526659 Msa0195670:intron 35.0%
CCTTTGCTTATAATAGTGAC+CGG + chr2_1:12526957-12526976 None:intergenic 35.0%
CAAACTGCTCATAAGACAAA+CGG + chr2_1:12527213-12527232 None:intergenic 35.0%
TTCCCACAAACAAACAAAAG+AGG - chr2_1:12527264-12527283 Msa0195670:CDS 35.0%
!! CACCTCTTTTGTTTGTTTGT+GGG + chr2_1:12527269-12527288 None:intergenic 35.0%
!! TCACCTCTTTTGTTTGTTTG+TGG + chr2_1:12527270-12527289 None:intergenic 35.0%
TGTTGTGTTTGTGAAATTGC+AGG - chr2_1:12527362-12527381 Msa0195670:CDS 35.0%
AAGAAAGCTGATGAGATCTT+TGG - chr2_1:12527393-12527412 Msa0195670:CDS 35.0%
AGAAAGCTGATGAGATCTTT+GGG - chr2_1:12527394-12527413 Msa0195670:CDS 35.0%
GAAAAAAGAAGCTGAAGTAG+AGG + chr2_1:12527511-12527530 None:intergenic 35.0%
AAGAGAGAAGAACATGTTGG+TGG - chr2_1:12524992-12525011 Msa0195670:CDS 40.0%
GTAGAGCAGAAACTTCTGAT+TGG + chr2_1:12525148-12525167 None:intergenic 40.0%
TTCAGCAAGTGCAAGCTTAT+CGG + chr2_1:12525255-12525274 None:intergenic 40.0%
! TGCACTTGCTGAACAAGATA+AGG - chr2_1:12525262-12525281 Msa0195670:intron 40.0%
! CTTCACTTTCTAGTACAGTG+AGG - chr2_1:12525428-12525447 Msa0195670:intron 40.0%
!!! TGTAACATGGTTTTTGGTGC+AGG - chr2_1:12526026-12526045 Msa0195670:intron 40.0%
!!! GTAACATGGTTTTTGGTGCA+GGG - chr2_1:12526027-12526046 Msa0195670:intron 40.0%
TGCAGCTATGTTACATAGTC+AGG - chr2_1:12526068-12526087 Msa0195670:intron 40.0%
ACAGATGCAGAAACAATAGG+AGG + chr2_1:12526550-12526569 None:intergenic 40.0%
GCAGGTTTAGATGTTCTTGA+TGG + chr2_1:12526577-12526596 None:intergenic 40.0%
TGCTTAACATATACTCCCTC+CGG - chr2_1:12526935-12526954 Msa0195670:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr2_1:12527070-12527089 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr2_1:12527069-12527088 None:intergenic 40.0%
CCGGTCACTATTATAAGCAA+AGG - chr2_1:12526954-12526973 Msa0195670:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr2_1:12527069-12527088 Msa0195670:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr2_1:12527070-12527089 Msa0195670:intron 40.0%
GATAGCGCACTTGTTTAATC+TGG - chr2_1:12527100-12527119 Msa0195670:intron 40.0%
GCACTTGTTTAATCTGGTAG+TGG - chr2_1:12527106-12527125 Msa0195670:intron 40.0%
CGTTTGTCTTATGAGCAGTT+TGG - chr2_1:12527211-12527230 Msa0195670:CDS 40.0%
!!! GTATCTCGTCCCCTTTTTTA+TGG - chr2_1:12527300-12527319 Msa0195670:CDS 40.0%
GCTGAAGTAGAGGAAATATC+AGG + chr2_1:12527501-12527520 None:intergenic 40.0%
! AGAGAAGAACATGTTGGTGG+CGG - chr2_1:12524995-12525014 Msa0195670:CDS 45.0%
TTCAAACCTCGATATTCCCG+AGG - chr2_1:12525028-12525047 Msa0195670:CDS 45.0%
TAGAACTTGCAGCAACTCCT+CGG + chr2_1:12525048-12525067 None:intergenic 45.0%
! ATCGAGTTGCTCGAAAGGAT+CGG + chr2_1:12525075-12525094 None:intergenic 45.0%
! CGTGTTGACACGTGTTGAAA+GGG + chr2_1:12525123-12525142 None:intergenic 45.0%
TGCCAAAAAAGACGAGCTCA+TGG - chr2_1:12525178-12525197 Msa0195670:intron 45.0%
!!! TGCCATGAGCTCGTCTTTTT+TGG + chr2_1:12525183-12525202 None:intergenic 45.0%
TACAGTGAGGAAGCTCAGTA+GGG - chr2_1:12525441-12525460 Msa0195670:intron 45.0%
! GCAGTTGGAGGTTTTCAGAA+AGG - chr2_1:12525569-12525588 Msa0195670:intron 45.0%
GTTTGCATTGAAGAAGGCCT+AGG + chr2_1:12526253-12526272 None:intergenic 45.0%
TGCAGGAAATTCCTTTGCAG+AGG - chr2_1:12526285-12526304 Msa0195670:intron 45.0%
TGATTGACGATCCTCTGCAA+AGG + chr2_1:12526299-12526318 None:intergenic 45.0%
TCGAAAAATGTAGCTGGACC+TGG - chr2_1:12526442-12526461 Msa0195670:intron 45.0%
GATGATGCTTGAGATCTTCC+AGG + chr2_1:12526463-12526482 None:intergenic 45.0%
AATGCGAGGAGTCGTAGTTT+GGG + chr2_1:12526512-12526531 None:intergenic 45.0%
TAATGCGAGGAGTCGTAGTT+TGG + chr2_1:12526513-12526532 None:intergenic 45.0%
GAAACAATAGGAGGTGAACC+AGG + chr2_1:12526541-12526560 None:intergenic 45.0%
CAATTTGAAGGGAAACCGCA+TGG + chr2_1:12526612-12526631 None:intergenic 45.0%
CGGTTTCCCTTCAAATTGAC+AGG - chr2_1:12526614-12526633 Msa0195670:intron 45.0%
GCTAGACATTGAACCAGTAG+AGG + chr2_1:12526656-12526675 None:intergenic 45.0%
! ACTGGTTCAATGTCTAGCTC+TGG - chr2_1:12526658-12526677 Msa0195670:intron 45.0%
TTCTTGTCTCAGCACGAACT+CGG - chr2_1:12526829-12526848 Msa0195670:intron 45.0%
TTCTTTCGCCAAGTCAGGTA+AGG - chr2_1:12526867-12526886 Msa0195670:CDS 45.0%
TCTTTCGCCAAGTCAGGTAA+GGG - chr2_1:12526868-12526887 Msa0195670:CDS 45.0%
AAAGGGGACGAGATACATGA+GGG + chr2_1:12527296-12527315 None:intergenic 45.0%
AAAAGGGGACGAGATACATG+AGG + chr2_1:12527297-12527316 None:intergenic 45.0%
!! AATATAATAATTACAATATT+TGG - chr2_1:12525814-12525833 Msa0195670:CDS 5.0%
!! TATATATGTATATAAATTAA+GGG - chr2_1:12526770-12526789 Msa0195670:intron 5.0%
! GGAGAGGAATGCAGAAGCAT+TGG + chr2_1:12524887-12524906 None:intergenic 50.0%
!! ATGTTGGTGGCGGAATTGAG+TGG - chr2_1:12525005-12525024 Msa0195670:CDS 50.0%
AGAACTTGCAGCAACTCCTC+GGG + chr2_1:12525047-12525066 None:intergenic 50.0%
AGTTGCTCGAAAGGATCGGA+CGG + chr2_1:12525071-12525090 None:intergenic 50.0%
TCCTTTCGAGCAACTCGATG+TGG - chr2_1:12525076-12525095 Msa0195670:intron 50.0%
ACGTGTTGAAAGGGCAATGG+AGG + chr2_1:12525114-12525133 None:intergenic 50.0%
GACACGTGTTGAAAGGGCAA+TGG + chr2_1:12525117-12525136 None:intergenic 50.0%
! GCGTGTTGACACGTGTTGAA+AGG + chr2_1:12525124-12525143 None:intergenic 50.0%
AGCAAGTGCAAGCTTATCGG+CGG + chr2_1:12525252-12525271 None:intergenic 50.0%
GTACAGTGAGGAAGCTCAGT+AGG - chr2_1:12525440-12525459 Msa0195670:intron 50.0%
ACCACTTCCACATCTCAGCT+TGG - chr2_1:12526096-12526115 Msa0195670:intron 50.0%
TCCAAGCTGAGATGTGGAAG+TGG + chr2_1:12526100-12526119 None:intergenic 50.0%
ACTTCCACATCTCAGCTTGG+AGG - chr2_1:12526099-12526118 Msa0195670:intron 50.0%
AGTACCTCCAAGCTGAGATG+TGG + chr2_1:12526106-12526125 None:intergenic 50.0%
AAGATGCTGCATTGCCACCT+AGG - chr2_1:12526233-12526252 Msa0195670:intron 50.0%
TGCATTGAAGAAGGCCTAGG+TGG + chr2_1:12526250-12526269 None:intergenic 50.0%
GCAGAGGATCGTCAATCAGA+TGG - chr2_1:12526301-12526320 Msa0195670:intron 50.0%
ACAATAGGAGGTGAACCAGG+AGG + chr2_1:12526538-12526557 None:intergenic 50.0%
CATCTAAACCTGCGTCTCCA+AGG - chr2_1:12526584-12526603 Msa0195670:intron 50.0%
!! TCAATGTCTAGCTCTGGCAC+AGG - chr2_1:12526664-12526683 Msa0195670:intron 50.0%
TCTTGTCTCAGCACGAACTC+GGG - chr2_1:12526830-12526849 Msa0195670:intron 50.0%
AGGAGTTCTTTCGCCAAGTC+AGG - chr2_1:12526862-12526881 Msa0195670:CDS 50.0%
CCAAAGACCCTTACCTGACT+TGG + chr2_1:12526878-12526897 None:intergenic 50.0%
CCAAGTCAGGTAAGGGTCTT+TGG - chr2_1:12526875-12526894 Msa0195670:CDS 50.0%
GCAACTCCTCGGGAATATCG+AGG + chr2_1:12525037-12525056 None:intergenic 55.0%
! GCCACATCGAGTTGCTCGAA+AGG + chr2_1:12525080-12525099 None:intergenic 55.0%
TCAGAAAGAGCAGCCTGGAG+AGG + chr2_1:12525227-12525246 None:intergenic 55.0%
GCTCAGTAGGGATGTCTCCA+AGG - chr2_1:12525453-12525472 Msa0195670:intron 55.0%
!!! TGGTTTTTGGTGCAGGGAGC+AGG - chr2_1:12526033-12526052 Msa0195670:intron 55.0%
ACTCCTCGCATTAGTCCTCC+TGG - chr2_1:12526520-12526539 Msa0195670:intron 55.0%
GAACCAGGAGGACTAATGCG+AGG + chr2_1:12526526-12526545 None:intergenic 55.0%
ACGAACTCGGGTGGATGGAA+AGG - chr2_1:12526842-12526861 Msa0195670:CDS 55.0%
GCGCTATCACTTACTCCCTC+CGG + chr2_1:12527088-12527107 None:intergenic 55.0%
AGACGAGCTCATGGCAGAGC+TGG - chr2_1:12525187-12525206 Msa0195670:CDS 60.0%
CATGGCAGAGCTGGAAGCTC+AGG - chr2_1:12525196-12525215 Msa0195670:CDS 60.0%
CGGCTTCAGAAAGAGCAGCC+TGG + chr2_1:12525232-12525251 None:intergenic 60.0%
TGTCTCAGCACGAACTCGGG+TGG - chr2_1:12526833-12526852 Msa0195670:intron 60.0%
TCAGCACGAACTCGGGTGGA+TGG - chr2_1:12526837-12526856 Msa0195670:intron 60.0%
AGCTCAGGCAGAGCCTCTCC+AGG - chr2_1:12525211-12525230 Msa0195670:CDS 65.0%
! TGCGTCTCCAAGGCGCCATG+CGG - chr2_1:12526594-12526613 Msa0195670:intron 65.0%
AGGGAAACCGCATGGCGCCT+TGG + chr2_1:12526604-12526623 None:intergenic 65.0%
GCATGGCGCCTTGGAGACGC+AGG + chr2_1:12526595-12526614 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 12524837 12527631 12524837 ID=Msa0195670;Name=Msa0195670
chr2_1 mRNA 12524837 12527631 12524837 ID=Msa0195670-mRNA-1;Parent=Msa0195670;Name=Msa0195670-mRNA-1;_AED=0.14;_eAED=0.14;_QI=168|0.85|0.87|1|1|1|8|155|338
chr2_1 exon 12524837 12525084 12524837 ID=Msa0195670-mRNA-1:exon:5496;Parent=Msa0195670-mRNA-1
chr2_1 exon 12525183 12525261 12525183 ID=Msa0195670-mRNA-1:exon:5495;Parent=Msa0195670-mRNA-1
chr2_1 exon 12525740 12526013 12525740 ID=Msa0195670-mRNA-1:exon:5494;Parent=Msa0195670-mRNA-1
chr2_1 exon 12526146 12526238 12526146 ID=Msa0195670-mRNA-1:exon:5493;Parent=Msa0195670-mRNA-1
chr2_1 exon 12526348 12526420 12526348 ID=Msa0195670-mRNA-1:exon:5492;Parent=Msa0195670-mRNA-1
chr2_1 exon 12526839 12526895 12526839 ID=Msa0195670-mRNA-1:exon:5491;Parent=Msa0195670-mRNA-1
chr2_1 exon 12526994 12527062 12526994 ID=Msa0195670-mRNA-1:exon:5490;Parent=Msa0195670-mRNA-1
chr2_1 exon 12527185 12527631 12527185 ID=Msa0195670-mRNA-1:exon:5489;Parent=Msa0195670-mRNA-1
chr2_1 five_prime_UTR 12527464 12527631 12527464 ID=Msa0195670-mRNA-1:five_prime_utr;Parent=Msa0195670-mRNA-1
chr2_1 CDS 12527185 12527463 12527185 ID=Msa0195670-mRNA-1:cds;Parent=Msa0195670-mRNA-1
chr2_1 CDS 12526994 12527062 12526994 ID=Msa0195670-mRNA-1:cds;Parent=Msa0195670-mRNA-1
chr2_1 CDS 12526839 12526895 12526839 ID=Msa0195670-mRNA-1:cds;Parent=Msa0195670-mRNA-1
chr2_1 CDS 12526348 12526420 12526348 ID=Msa0195670-mRNA-1:cds;Parent=Msa0195670-mRNA-1
chr2_1 CDS 12526146 12526238 12526146 ID=Msa0195670-mRNA-1:cds;Parent=Msa0195670-mRNA-1
chr2_1 CDS 12525740 12526013 12525740 ID=Msa0195670-mRNA-1:cds;Parent=Msa0195670-mRNA-1
chr2_1 CDS 12525183 12525261 12525183 ID=Msa0195670-mRNA-1:cds;Parent=Msa0195670-mRNA-1
chr2_1 CDS 12524992 12525084 12524992 ID=Msa0195670-mRNA-1:cds;Parent=Msa0195670-mRNA-1
chr2_1 three_prime_UTR 12524837 12524991 12524837 ID=Msa0195670-mRNA-1:three_prime_utr;Parent=Msa0195670-mRNA-1
Gene Sequence

>Msa0195670

ATGTTGGTGGCGGAATTGAGTGGTTCAAACCTCGATATTCCCGAGGAGTTGCTGCAAGTTCTACCGTCCGATCCTTTCGAGCAACTCGATGTGGCTCGCAAAATCACCTCCATTGCCCTTTCAACACGTGTCAACACGCTCCAATCAGAAGTTTCTGCTCTACGTGATGAGCTTGCCAAAAAAGACGAGCTCATGGCAGAGCTGGAAGCTCAGGCAGAGCCTCTCCAGGCTGCTCTTTCTGAAGCCGCCGATAAGCTTGCACTTGCTGAACAAGATAAGGAGAAATTGTTGAAGGAGAATGCTTCACTTTCTAGTACAGTGAGGAAGCTCAGTAGGGATGTCTCCAAGTTGGAGGTTTTCAGAAAGGCACTTATGCAATCACTTCAAGAGGATGAAGAAAAACCTGGAGCAGGATCACCCAACATTGCAGCTATGTTACATAGTCAGGCAAGTACCACTTCCACATCTCAGCTTGGAGATGAAGATGCTGCATTGCCACCTAGGCCTTCTTCAATGCAAACCAATAATTCTGATGCAGGAAATTCCTTTGCAGAGGATCGTCAATCAGATGCTGGACCTGGAAGATCTCAAGCATCATCATCATCACATAATATTTTGTTAGCATCCCAAACTACGACTCCTCGCATTAGTCCTCCTGGTTCACCTCCTATTGTTTCTGCATCTGTATCACCATCAAGAACATCTAAACCTGCGTCTCCAAGGCGCCATGCGGTTTCCCTTCAAATTGACAGGACTTCTTCAATGTTTTCCTCTACTGGTTCAATGTCTAGCTCTGGCACAGGTTTCTGCATGCTACCTCAATGTCCAACTTTCAATAATTATTTGAGCCGTTTGTCTTATGAGCAGTTTGGTGCATTTTTAGCAAATGTTAAGGAACTGAATTCCCACAAACAAACAAAAGAGGAGACACTAAAGAAAGCTGATGAGATCTTTGGGCCAGAAAACAAAGATCTGTATACTATATTTGAAGGATTGATTAGTCGCAATGTTCATTAA

Protein sequence

>Msa0195670

MLVAELSGSNLDIPEELLQVLPSDPFEQLDVARKITSIALSTRVNTLQSEVSALRDELAKKDELMAELEAQAEPLQAALSEAADKLALAEQDKEKLLKENASLSSTVRKLSRDVSKLEVFRKALMQSLQEDEEKPGAGSPNIAAMLHSQASTTSTSQLGDEDAALPPRPSSMQTNNSDAGNSFAEDRQSDAGPGRSQASSSSHNILLASQTTTPRISPPGSPPIVSASVSPSRTSKPASPRRHAVSLQIDRTSSMFSSTGSMSSSGTGFCMLPQCPTFNNYLSRLSYEQFGAFLANVKELNSHKQTKEETLKKADEIFGPENKDLYTIFEGLISRNVH*