Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136690 | sp|F4IUW3|AVT1C_ARATH | 57.741 | 549 | 185 | 6 | 1 | 503 | 1 | 548 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136690 | A0A1S2YMK1 | 78.309 | 544 | 77 | 3 | 1 | 505 | 1 | 542 | 0.0 | 844 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0136690 | 0.806877 | 6.645428e-50 | -8.615850e-47 |
| Msa0019830 | Msa0136690 | 0.823314 | 1.480285e-53 | -8.615850e-47 |
| Msa0032130 | Msa0136690 | 0.824015 | 1.014753e-53 | -8.615850e-47 |
| Msa0032390 | Msa0136690 | 0.820625 | 6.214165e-53 | -8.615850e-47 |
| Msa0045620 | Msa0136690 | 0.830408 | 2.987430e-55 | -8.615850e-47 |
| Msa0050530 | Msa0136690 | 0.803479 | 3.419008e-49 | -8.615850e-47 |
| Msa0057860 | Msa0136690 | 0.805032 | 1.623158e-49 | -8.615850e-47 |
| Msa0102920 | Msa0136690 | 0.806545 | 7.810310e-50 | -8.615850e-47 |
| Msa0136690 | Msa0147680 | 0.815386 | 9.494324e-52 | -8.615850e-47 |
| Msa0136690 | Msa0158760 | 0.893617 | 5.320620e-75 | -8.615850e-47 |
| Msa0136690 | Msa0185690 | 0.822846 | 1.904147e-53 | -8.615850e-47 |
| Msa0136690 | Msa0206370 | 0.807759 | 4.321202e-50 | -8.615850e-47 |
| Msa0136690 | Msa0235080 | 0.808313 | 3.293729e-50 | -8.615850e-47 |
| Msa0136690 | Msa0260980 | 0.806680 | 7.313337e-50 | -8.615850e-47 |
| Msa0136690 | Msa0264890 | 0.802251 | 6.130882e-49 | -8.615850e-47 |
| Msa0136690 | Msa0336520 | 0.800326 | 1.518709e-48 | -8.615850e-47 |
| Msa0136690 | Msa0372100 | 0.811934 | 5.459764e-51 | -8.615850e-47 |
| Msa0136690 | Msa0416210 | 0.810209 | 1.291252e-50 | -8.615850e-47 |
| Msa0136690 | Msa0421290 | 0.804583 | 2.014615e-49 | -8.615850e-47 |
| Msa0136690 | Msa0422820 | 0.812307 | 4.528213e-51 | -8.615850e-47 |
| Msa0136690 | Msa0422900 | 0.815946 | 7.123210e-52 | -8.615850e-47 |
| Msa0136690 | Msa0433630 | 0.822125 | 2.799440e-53 | -8.615850e-47 |
| Msa0136690 | Msa0467250 | 0.805943 | 1.045461e-49 | -8.615850e-47 |
| Msa0136690 | Msa0469060 | 0.803542 | 3.317061e-49 | -8.615850e-47 |
| Msa0136690 | Msa0521510 | 0.808207 | 3.469680e-50 | -8.615850e-47 |
| Msa0136690 | Msa0521530 | 0.803146 | 4.006945e-49 | -8.615850e-47 |
| Msa0136690 | Msa0530660 | 0.813258 | 2.803239e-51 | -8.615850e-47 |
| Msa0136690 | Msa0566460 | 0.842358 | 2.715323e-58 | -8.615850e-47 |
| Msa0136690 | Msa0587180 | 0.809898 | 1.507227e-50 | -8.615850e-47 |
| Msa0136690 | Msa0623310 | 0.824294 | 8.724320e-54 | -8.615850e-47 |
| Msa0136690 | Msa0626980 | 0.810017 | 1.420695e-50 | -8.615850e-47 |
| Msa0136690 | Msa0627360 | 0.812264 | 4.626196e-51 | -8.615850e-47 |
| Msa0136690 | Msa0658120 | 0.841481 | 4.630116e-58 | -8.615850e-47 |
| Msa0136690 | Msa0673940 | 0.822440 | 2.365719e-53 | -8.615850e-47 |
| Msa0136690 | Msa0687370 | 0.809335 | 1.991371e-50 | -8.615850e-47 |
| Msa0136690 | Msa0689830 | 0.824016 | 1.014146e-53 | -8.615850e-47 |
| Msa0136690 | Msa0702970 | 0.838016 | 3.693581e-57 | -8.615850e-47 |
| Msa0136690 | Msa0726520 | 0.811540 | 6.652544e-51 | -8.615850e-47 |
| Msa0136690 | Msa0751720 | 0.816311 | 5.904116e-52 | -8.615850e-47 |
| Msa0136690 | Msa0766860 | 0.811471 | 6.885407e-51 | -8.615850e-47 |
| Msa0136690 | Msa0828350 | 0.811557 | 6.597584e-51 | -8.615850e-47 |
| Msa0136690 | Msa0846900 | 0.834334 | 3.182722e-56 | -8.615850e-47 |
| Msa0136690 | Msa0926310 | 0.801714 | 7.904495e-49 | -8.615850e-47 |
| Msa0136690 | Msa0987670 | 0.819611 | 1.060380e-52 | -8.615850e-47 |
| Msa0136690 | Msa0989480 | 0.803145 | 4.009274e-49 | -8.615850e-47 |
| Msa0136690 | Msa1021560 | 0.816825 | 4.529958e-52 | -8.615850e-47 |
| Msa0136690 | Msa1025200 | 0.805975 | 1.029495e-49 | -8.615850e-47 |
| Msa0136690 | Msa1025220 | 0.808477 | 3.039017e-50 | -8.615850e-47 |
| Msa0136690 | Msa1050260 | 0.806332 | 8.659524e-50 | -8.615850e-47 |
| Msa0136690 | Msa1105540 | 0.800565 | 1.357790e-48 | -8.615850e-47 |
| Msa0136690 | Msa1124210 | 0.816144 | 6.432272e-52 | -8.615850e-47 |
| Msa0136690 | Msa1130770 | 0.803667 | 3.124643e-49 | -8.615850e-47 |
| Msa0136690 | Msa1148930 | 0.818749 | 1.666485e-52 | -8.615850e-47 |
| Msa0136690 | Msa1180840 | 0.812869 | 3.412574e-51 | -8.615850e-47 |
| Msa0136690 | Msa1220720 | 0.810275 | 1.249766e-50 | -8.615850e-47 |
| Msa0136690 | Msa1265570 | 0.813064 | 3.091979e-51 | -8.615850e-47 |
| Msa0136690 | Msa1283980 | 0.803493 | 3.395983e-49 | -8.615850e-47 |
| Msa0136690 | Msa1334670 | 0.814536 | 1.465285e-51 | -8.615850e-47 |
| Msa0136690 | Msa1365230 | 0.811288 | 7.545468e-51 | -8.615850e-47 |
| Msa0136690 | Msa1371800 | 0.832473 | 9.266929e-56 | -8.615850e-47 |
| Msa0136690 | Msa1376310 | 0.830393 | 3.011499e-55 | -8.615850e-47 |
| Msa0136690 | Msa1385570 | 0.813356 | 2.667756e-51 | -8.615850e-47 |
| Msa0136690 | Msa1395050 | 0.839493 | 1.532952e-57 | -8.615850e-47 |
| Msa0136690 | Msa1398490 | 0.820907 | 5.352099e-53 | -8.615850e-47 |
| Msa0136690 | Msa1447900 | 0.808819 | 2.567836e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136690 | MtrunA17_Chr1g0171021 | 96.570 | 379 | 13 | 0 | 1 | 379 | 1 | 379 | 0.0 | 756 |
| Msa0136690 | MtrunA17_Chr1g0199431 | 66.755 | 376 | 118 | 7 | 1 | 374 | 1 | 371 | 1.28e-167 | 481 |
| Msa0136690 | MtrunA17_Chr7g0239021 | 38.283 | 559 | 254 | 10 | 7 | 502 | 17 | 547 | 3.20e-119 | 361 |
| Msa0136690 | MtrunA17_Chr7g0256281 | 36.822 | 535 | 280 | 8 | 2 | 500 | 8 | 520 | 2.96e-112 | 342 |
| Msa0136690 | MtrunA17_Chr4g0022261 | 37.349 | 498 | 237 | 7 | 51 | 500 | 51 | 521 | 5.96e-109 | 333 |
| Msa0136690 | MtrunA17_Chr7g0239011 | 43.424 | 403 | 186 | 4 | 141 | 502 | 50 | 451 | 1.17e-99 | 307 |
| Msa0136690 | MtrunA17_Chr7g0256251 | 40.351 | 399 | 208 | 10 | 2 | 394 | 6 | 380 | 2.02e-93 | 290 |
| Msa0136690 | MtrunA17_Chr7g0217401 | 35.349 | 430 | 233 | 8 | 117 | 503 | 4 | 431 | 7.73e-84 | 266 |
| Msa0136690 | MtrunA17_Chr7g0217381 | 34.954 | 432 | 237 | 7 | 114 | 503 | 1 | 430 | 9.95e-84 | 265 |
| Msa0136690 | MtrunA17_Chr8g0361631 | 36.512 | 367 | 186 | 7 | 144 | 468 | 11 | 372 | 1.65e-74 | 241 |
| Msa0136690 | MtrunA17_Chr3g0105861 | 32.251 | 431 | 246 | 7 | 116 | 503 | 4 | 431 | 1.68e-74 | 241 |
| Msa0136690 | MtrunA17_Chr3g0090101 | 38.462 | 338 | 168 | 4 | 168 | 466 | 10 | 346 | 3.36e-74 | 239 |
| Msa0136690 | MtrunA17_Chr1g0171011 | 89.630 | 135 | 7 | 1 | 378 | 505 | 4 | 138 | 2.43e-72 | 226 |
| Msa0136690 | MtrunA17_Chr8g0361211 | 33.508 | 382 | 203 | 7 | 131 | 470 | 45 | 417 | 1.67e-68 | 226 |
| Msa0136690 | MtrunA17_Chr8g0361641 | 34.421 | 337 | 174 | 6 | 174 | 468 | 1 | 332 | 8.12e-63 | 209 |
| Msa0136690 | MtrunA17_Chr8g0361591 | 36.119 | 335 | 171 | 5 | 174 | 468 | 1 | 332 | 1.94e-59 | 200 |
| Msa0136690 | MtrunA17_Chr3g0105831 | 40.196 | 204 | 122 | 0 | 169 | 372 | 5 | 208 | 3.25e-55 | 184 |
| Msa0136690 | MtrunA17_Chr3g0122241 | 28.954 | 411 | 249 | 5 | 132 | 500 | 57 | 466 | 4.52e-46 | 167 |
| Msa0136690 | MtrunA17_Chr1g0199441 | 49.669 | 151 | 61 | 1 | 353 | 503 | 11 | 146 | 1.05e-37 | 135 |
| Msa0136690 | MtrunA17_Chr7g0256241 | 43.243 | 111 | 63 | 0 | 390 | 500 | 4 | 114 | 9.44e-23 | 93.2 |
| Msa0136690 | MtrunA17_Chr3g0105821 | 31.897 | 116 | 76 | 2 | 390 | 503 | 36 | 150 | 1.50e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136690 | AT2G39130.2 | 57.741 | 549 | 185 | 6 | 1 | 503 | 1 | 548 | 0.0 | 615 |
| Msa0136690 | AT2G39130.1 | 57.741 | 549 | 185 | 6 | 1 | 503 | 1 | 548 | 0.0 | 615 |
| Msa0136690 | AT2G39130.3 | 57.851 | 484 | 157 | 6 | 1 | 438 | 1 | 483 | 0.0 | 543 |
| Msa0136690 | AT3G54830.2 | 53.770 | 504 | 175 | 7 | 1 | 454 | 1 | 496 | 4.13e-171 | 494 |
| Msa0136690 | AT3G54830.1 | 53.770 | 504 | 175 | 7 | 1 | 454 | 1 | 496 | 4.13e-171 | 494 |
| Msa0136690 | AT3G09340.1 | 41.373 | 539 | 253 | 11 | 12 | 503 | 1 | 523 | 5.07e-129 | 385 |
| Msa0136690 | AT5G02180.1 | 39.925 | 536 | 243 | 7 | 15 | 503 | 45 | 548 | 7.14e-129 | 386 |
| Msa0136690 | AT5G02180.2 | 39.925 | 536 | 243 | 7 | 15 | 503 | 45 | 548 | 7.14e-129 | 386 |
| Msa0136690 | AT3G09330.1 | 42.455 | 497 | 226 | 8 | 51 | 503 | 43 | 523 | 2.24e-122 | 369 |
| Msa0136690 | AT5G02170.1 | 41.187 | 556 | 240 | 13 | 2 | 503 | 3 | 525 | 4.76e-122 | 368 |
| Msa0136690 | AT2G41190.1 | 36.832 | 524 | 255 | 9 | 32 | 500 | 30 | 532 | 7.93e-111 | 339 |
| Msa0136690 | AT5G02170.2 | 37.573 | 511 | 215 | 12 | 15 | 473 | 8 | 466 | 6.38e-99 | 306 |
| Msa0136690 | AT2G41190.2 | 35.974 | 467 | 223 | 9 | 32 | 443 | 30 | 475 | 2.44e-89 | 283 |
| Msa0136690 | AT5G15240.1 | 34.406 | 404 | 225 | 4 | 139 | 502 | 19 | 422 | 4.21e-75 | 243 |
| Msa0136690 | AT3G28960.5 | 33.252 | 412 | 224 | 7 | 136 | 503 | 1 | 405 | 5.36e-70 | 229 |
| Msa0136690 | AT3G28960.2 | 33.252 | 412 | 224 | 7 | 136 | 503 | 1 | 405 | 5.36e-70 | 229 |
| Msa0136690 | AT3G28960.3 | 33.252 | 412 | 224 | 7 | 136 | 503 | 1 | 405 | 5.36e-70 | 229 |
| Msa0136690 | AT3G28960.1 | 33.252 | 412 | 224 | 7 | 136 | 503 | 1 | 405 | 5.36e-70 | 229 |
| Msa0136690 | AT5G15240.3 | 32.738 | 336 | 186 | 4 | 207 | 502 | 1 | 336 | 1.26e-53 | 184 |
| Msa0136690 | AT3G28960.4 | 30.792 | 341 | 187 | 6 | 207 | 503 | 1 | 336 | 4.02e-51 | 177 |
| Msa0136690 | AT5G16740.1 | 29.730 | 407 | 209 | 9 | 154 | 503 | 34 | 420 | 1.34e-47 | 171 |
| Msa0136690 | AT5G15240.2 | 30.137 | 365 | 183 | 7 | 139 | 502 | 19 | 312 | 1.87e-40 | 148 |
| Msa0136690 | AT3G11900.2 | 29.386 | 228 | 142 | 5 | 157 | 373 | 35 | 254 | 9.80e-15 | 76.6 |
| Msa0136690 | AT3G11900.1 | 29.386 | 228 | 142 | 5 | 157 | 373 | 35 | 254 | 9.80e-15 | 76.6 |
Find 146 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAAGTTAACTCAAAATT+TGG | 0.159623 | 1_3:+68778922 | None:intergenic |
| AAAACTTTGCCTTATGAAAA+TGG | 0.167496 | 1_3:+68784504 | None:intergenic |
| TATAAAGGATATTTGGTAAA+TGG | 0.175403 | 1_3:+68780250 | None:intergenic |
| TTTAATTCTTTCACACATTA+AGG | 0.200610 | 1_3:-68784477 | Msa0136690:intron |
| CCTGTTGCTGTTGGTCTCTA+TGG | 0.216394 | 1_3:-68780915 | Msa0136690:CDS |
| AACTGAAAGTTGGGATTATT+TGG | 0.222355 | 1_3:+68779970 | None:intergenic |
| CGCTATTTAAATTACTTCTT+TGG | 0.239468 | 1_3:+68784589 | None:intergenic |
| TCCAAATGCACATTTAAGTT+TGG | 0.242956 | 1_3:-68781286 | Msa0136690:CDS |
| TTTGGACAAGCTGTGCTTAA+TGG | 0.243493 | 1_3:-68782970 | Msa0136690:intron |
| TAGCACTTATAAAGGATATT+TGG | 0.246445 | 1_3:+68780243 | None:intergenic |
| AACGAAAGACTAACCGAAAA+AGG | 0.249750 | 1_3:+68779885 | None:intergenic |
| TTTCCTGGTCAATGCACTTT+TGG | 0.269845 | 1_3:-68782988 | Msa0136690:CDS |
| TACCAAGTCAAGAGTACTTT+AGG | 0.272613 | 1_3:+68780825 | None:intergenic |
| AACAAGCAGATGGTAGAATA+AGG | 0.277870 | 1_3:+68779557 | None:intergenic |
| GAAAAGTTAACTCAAAATTT+GGG | 0.296219 | 1_3:+68778923 | None:intergenic |
| CGCATTCTAAGTTACATATC+AGG | 0.305862 | 1_3:-68781180 | Msa0136690:intron |
| GGTCTTGTATCATGCGGTTT+TGG | 0.312399 | 1_3:-68779089 | Msa0136690:CDS |
| CCAAATGCACATTTAAGTTT+GGG | 0.313973 | 1_3:-68781285 | Msa0136690:CDS |
| CCCAAACTTAAATGTGCATT+TGG | 0.315352 | 1_3:+68781285 | None:intergenic |
| TCGCCGAATATAGGATTTCT+TGG | 0.320198 | 1_3:-68783225 | Msa0136690:CDS |
| TTCATTCTCATCAGAATCAT+TGG | 0.320403 | 1_3:+68784224 | None:intergenic |
| ACTTCAAACAATCTCAGATT+TGG | 0.321972 | 1_3:+68778773 | None:intergenic |
| GCAGACAAATGTCATAATTC+AGG | 0.322634 | 1_3:+68779003 | None:intergenic |
| CAAGCTGCTTTCGGTACTTA+TGG | 0.330779 | 1_3:-68781711 | Msa0136690:CDS |
| GGTTTGGTAATGTCATTAAT+CGG | 0.336891 | 1_3:-68779700 | Msa0136690:CDS |
| CACAAGTAAAAGTAACAAAA+TGG | 0.337829 | 1_3:+68778884 | None:intergenic |
| GACATTGGCCAAGCTGCTTT+CGG | 0.342012 | 1_3:-68781720 | Msa0136690:CDS |
| ATGAACTTCATGAGATATCT+TGG | 0.346784 | 1_3:+68783011 | None:intergenic |
| TTCTTCCCACCGTTTGGCTC+CGG | 0.354053 | 1_3:-68781209 | Msa0136690:CDS |
| GCCATAGCTGTATACAGATT+CGG | 0.360626 | 1_3:+68780864 | None:intergenic |
| GTTCCAAGAAATCCTATATT+CGG | 0.367811 | 1_3:+68783222 | None:intergenic |
| CCATAGAGACCAACAGCAAC+AGG | 0.369630 | 1_3:+68780915 | None:intergenic |
| CCACCTTCTTTGAGAGCATA+AGG | 0.374052 | 1_3:+68781849 | None:intergenic |
| CAGTTATATGAACTGGAATC+TGG | 0.379438 | 1_3:+68778969 | None:intergenic |
| CCATAGCTGTATACAGATTC+GGG | 0.379742 | 1_3:+68780865 | None:intergenic |
| CTTGCTGTTGCGTTATTGCT+TGG | 0.379963 | 1_3:-68781772 | Msa0136690:CDS |
| CCATGCCATGCTGTAAGAAC+TGG | 0.387737 | 1_3:+68784188 | None:intergenic |
| CTCATTGAAGACTTCCTAGA+TGG | 0.388938 | 1_3:+68783045 | None:intergenic |
| TGGCATGGCCTCAAAGTTAC+AGG | 0.392509 | 1_3:-68784173 | Msa0136690:intron |
| TTCTGCCTCCCTTGATGCTT+AGG | 0.395362 | 1_3:+68779533 | None:intergenic |
| TGGCTATTCTTCCCACCGTT+TGG | 0.397127 | 1_3:-68781215 | Msa0136690:CDS |
| TCTAAAACAGTTATATGAAC+TGG | 0.397259 | 1_3:+68778962 | None:intergenic |
| ACCAAGTCAAGAGTACTTTA+GGG | 0.401734 | 1_3:+68780826 | None:intergenic |
| TCTTCCCACCGTTTGGCTCC+GGG | 0.404832 | 1_3:-68781208 | Msa0136690:CDS |
| GAAGAGAAGGTGTTGGGAAG+AGG | 0.408001 | 1_3:-68784276 | Msa0136690:CDS |
| AAGAATTCACCTTCAGATCA+AGG | 0.409140 | 1_3:-68784324 | Msa0136690:CDS |
| CAACAGCAAGCCAGTGTAGA+AGG | 0.416466 | 1_3:+68781785 | None:intergenic |
| AGTGGTACTGTGCTTGTTGT+GGG | 0.419401 | 1_3:-68781003 | Msa0136690:CDS |
| ATTTCTTGGAACAACGTCAT+TGG | 0.429255 | 1_3:-68783211 | Msa0136690:CDS |
| CTCTATGGTTATTGCTTCGC+AGG | 0.439069 | 1_3:-68780900 | Msa0136690:CDS |
| GGCTGTAAAGTTTCAGCAGT+TGG | 0.440229 | 1_3:+68783144 | None:intergenic |
| TCAACATTCCCTGTTGCTGT+TGG | 0.442672 | 1_3:-68780924 | Msa0136690:CDS |
| AGGCAATCCATTGATCTGTA+TGG | 0.443304 | 1_3:-68783258 | Msa0136690:CDS |
| ATTGATGAATGCGACTCAAA+AGG | 0.447969 | 1_3:+68784533 | None:intergenic |
| GTGGTTTCTACACTGCTTGT+TGG | 0.449205 | 1_3:-68779919 | Msa0136690:CDS |
| TCCTCTAGTGACAATGCTAC+TGG | 0.451627 | 1_3:+68780003 | None:intergenic |
| GTTAACTCAAAATTTGGGGT+TGG | 0.457649 | 1_3:+68778928 | None:intergenic |
| TATTGCTTGGACAGTCAACC+TGG | 0.459826 | 1_3:-68781759 | Msa0136690:CDS |
| TTGATGAATGCGACTCAAAA+GGG | 0.468974 | 1_3:+68784534 | None:intergenic |
| CACCTTCTTTGAGAGCATAA+GGG | 0.471215 | 1_3:+68781850 | None:intergenic |
| TATTGTTCCTTCTGTATGCA+TGG | 0.471552 | 1_3:+68780959 | None:intergenic |
| TAGTGGTACTGTGCTTGTTG+TGG | 0.473014 | 1_3:-68781004 | Msa0136690:CDS |
| AGGCAGAATCAAGCGCTCTC+AGG | 0.479863 | 1_3:-68779518 | Msa0136690:intron |
| GATGGAGTAGAACTGAAAGT+TGG | 0.481778 | 1_3:+68779960 | None:intergenic |
| AGCGTGCCATCGCCGAATAT+AGG | 0.485846 | 1_3:-68783234 | Msa0136690:CDS |
| GTACTGTGCTTGTTGTGGGT+TGG | 0.486084 | 1_3:-68780999 | Msa0136690:CDS |
| GTTTGGTAATGTCATTAATC+GGG | 0.487599 | 1_3:-68779699 | Msa0136690:CDS |
| ATGGAGTAGAACTGAAAGTT+GGG | 0.494516 | 1_3:+68779961 | None:intergenic |
| AAAGCAGCTTGGCCAATGTC+AGG | 0.494911 | 1_3:+68781723 | None:intergenic |
| TGCTTGTTTCCTAAGCATCA+AGG | 0.496356 | 1_3:-68779542 | Msa0136690:CDS |
| GTCCCTTATGCTCTCAAAGA+AGG | 0.496708 | 1_3:-68781852 | Msa0136690:CDS |
| TGCTTCCTCCCCTACCATCT+AGG | 0.499993 | 1_3:-68783059 | Msa0136690:CDS |
| TGAAGACTTCCTAGATGGTA+GGG | 0.501724 | 1_3:+68783050 | None:intergenic |
| GTAACTCACCTGTAACTTTG+AGG | 0.507915 | 1_3:+68784165 | None:intergenic |
| TGAACTTCATGAGATATCTT+GGG | 0.512081 | 1_3:+68783012 | None:intergenic |
| TGAAAGTTGGGATTATTTGG+TGG | 0.515485 | 1_3:+68779973 | None:intergenic |
| TCAGGATAAGTTTCAAGTCC+AGG | 0.516064 | 1_3:+68781741 | None:intergenic |
| ACAAGCAGATGGTAGAATAA+GGG | 0.516078 | 1_3:+68779558 | None:intergenic |
| TCCCTAAAGTACTCTTGACT+TGG | 0.516343 | 1_3:-68780827 | Msa0136690:intron |
| GCAGGCATAAATGCTCTTTG+TGG | 0.520606 | 1_3:-68781891 | Msa0136690:intron |
| CACGCTACCATACAGATCAA+TGG | 0.521027 | 1_3:+68783251 | None:intergenic |
| AACTTCTCCAAACTTCAAAA+CGG | 0.522087 | 1_3:+68778818 | None:intergenic |
| TTGGGAAGAGGAGAGAATGA+TGG | 0.524547 | 1_3:-68784264 | Msa0136690:CDS |
| ATGCTCTCAAAGAAGGTGGA+TGG | 0.526983 | 1_3:-68781845 | Msa0136690:CDS |
| GAGTGATGAAGATGAAGAGA+AGG | 0.528291 | 1_3:-68784289 | Msa0136690:CDS |
| TTGAAGACTTCCTAGATGGT+AGG | 0.530221 | 1_3:+68783049 | None:intergenic |
| AATGATTCTGATGAGAATGA+AGG | 0.531860 | 1_3:-68784222 | Msa0136690:CDS |
| CCCGAATCTGTATACAGCTA+TGG | 0.532035 | 1_3:-68780865 | Msa0136690:CDS |
| CTGATGAGAATGAAGGAGAG+AGG | 0.532683 | 1_3:-68784215 | Msa0136690:CDS |
| ATTGTTCCTTCTGTATGCAT+GGG | 0.532915 | 1_3:+68780960 | None:intergenic |
| TGCTCTCAAAGAAGGTGGAT+GGG | 0.540284 | 1_3:-68781844 | Msa0136690:CDS |
| CATAAGTACCGAAAGCAGCT+TGG | 0.541498 | 1_3:+68781712 | None:intergenic |
| AACTTAGAATGCGAAGGTCC+CGG | 0.543118 | 1_3:+68781190 | None:intergenic |
| GAAGATGAAGAGAAGGTGTT+GGG | 0.544871 | 1_3:-68784282 | Msa0136690:CDS |
| AATGCACATTTAAGTTTGGG+TGG | 0.546077 | 1_3:-68781282 | Msa0136690:CDS |
| CTTGAAACTTATCCTGACAT+TGG | 0.549249 | 1_3:-68781735 | Msa0136690:CDS |
| TGGATCATACTCAGCCATCT+CGG | 0.556651 | 1_3:-68779069 | Msa0136690:CDS |
| TGAGAGCATAAGGGACTGAA+AGG | 0.558425 | 1_3:+68781859 | None:intergenic |
| GCGAAGGTCCCGGAGCCAAA+CGG | 0.560552 | 1_3:+68781200 | None:intergenic |
| GCTTGTTTCCTAAGCATCAA+GGG | 0.562510 | 1_3:-68779541 | Msa0136690:CDS |
| GTGCTTGTTGTGGGTTGGAG+TGG | 0.564481 | 1_3:-68780994 | Msa0136690:CDS |
| GATGCATAGAATTGTGGATG+AGG | 0.569060 | 1_3:-68778721 | Msa0136690:three_prime_UTR |
| CTGCATCAGAACAGCACTAG+TGG | 0.570072 | 1_3:-68779938 | Msa0136690:CDS |
| TTCTGCAATCATCTCCGAGA+TGG | 0.572306 | 1_3:+68779055 | None:intergenic |
| ATAAATGCTCTTTGTGGTGT+GGG | 0.576598 | 1_3:-68781885 | Msa0136690:CDS |
| CATGCCATGCTGTAAGAACT+GGG | 0.578369 | 1_3:+68784189 | None:intergenic |
| TGTCCAAAAGTGCATTGACC+AGG | 0.579551 | 1_3:+68782985 | None:intergenic |
| TAGGAAGTCTTCAATGAGGA+AGG | 0.580300 | 1_3:-68783040 | Msa0136690:CDS |
| TTCTCGGTTCAACTTTGACA+AGG | 0.581271 | 1_3:-68783170 | Msa0136690:CDS |
| TGAAGATGAAGAGAAGGTGT+TGG | 0.584366 | 1_3:-68784283 | Msa0136690:CDS |
| GATACAGGTAATATTATACA+TGG | 0.585275 | 1_3:-68781578 | Msa0136690:intron |
| AAAAGTTAACTCAAAATTTG+GGG | 0.589328 | 1_3:+68778924 | None:intergenic |
| GTTTGCAATCTTGAGCACAT+TGG | 0.592279 | 1_3:-68781235 | Msa0136690:CDS |
| AGTGATTGCAACGGTTGTAG+TGG | 0.598466 | 1_3:-68781021 | Msa0136690:CDS |
| CAAAGAAGTAATTTAAATAG+CGG | 0.604913 | 1_3:-68784588 | Msa0136690:five_prime_UTR |
| CCTTATGCTCTCAAAGAAGG+TGG | 0.608297 | 1_3:-68781849 | Msa0136690:CDS |
| GACTTCCTAGATGGTAGGGG+AGG | 0.608744 | 1_3:+68783054 | None:intergenic |
| AGAAATCCTATATTCGGCGA+TGG | 0.610731 | 1_3:+68783228 | None:intergenic |
| TAGTGCTGTTCTGATGCAGA+TGG | 0.611097 | 1_3:+68779942 | None:intergenic |
| ATAGTAGGTCTTGTATCATG+CGG | 0.615478 | 1_3:-68779095 | Msa0136690:CDS |
| AAGGTCCCGGAGCCAAACGG+TGG | 0.617560 | 1_3:+68781203 | None:intergenic |
| TCCAGTAGCATTGTCACTAG+AGG | 0.618076 | 1_3:-68780004 | Msa0136690:CDS |
| ACAACGTCATTGGCAAGATT+AGG | 0.621527 | 1_3:-68783201 | Msa0136690:CDS |
| GAAGACTTCCTAGATGGTAG+GGG | 0.625696 | 1_3:+68783051 | None:intergenic |
| GATGTTCCCATGCATACAGA+AGG | 0.625864 | 1_3:-68780966 | Msa0136690:CDS |
| CATAAATGCTCTTTGTGGTG+TGG | 0.626615 | 1_3:-68781886 | Msa0136690:CDS |
| TGTGTTACAGTGGTTATAGT+AGG | 0.628179 | 1_3:-68779110 | Msa0136690:CDS |
| GAAGCAATATCTGAGAGCTA+CGG | 0.628664 | 1_3:+68783076 | None:intergenic |
| GAGACCCAGTTCTTACAGCA+TGG | 0.629381 | 1_3:-68784193 | Msa0136690:CDS |
| TGCTGCTCATCGACCGACGG+TGG | 0.630437 | 1_3:+68783102 | None:intergenic |
| ATATGTAACTTAGAATGCGA+AGG | 0.630484 | 1_3:+68781184 | None:intergenic |
| CGATGCTGCTCATCGACCGA+CGG | 0.631154 | 1_3:+68783099 | None:intergenic |
| TCGACCGACGGTGGTAGCAG+AGG | 0.633426 | 1_3:+68783111 | None:intergenic |
| CCAGTTCTTACAGCATGGCA+TGG | 0.635296 | 1_3:-68784188 | Msa0136690:CDS |
| ATGCTTAGGAAACAAGCAGA+TGG | 0.636166 | 1_3:+68779547 | None:intergenic |
| CATAGAGACCAACAGCAACA+GGG | 0.640777 | 1_3:+68780916 | None:intergenic |
| AGGTCCCGGAGCCAAACGGT+GGG | 0.641382 | 1_3:+68781204 | None:intergenic |
| AGTTAGACTCAAAGCATATG+TGG | 0.647151 | 1_3:+68780026 | None:intergenic |
| AAAGCCTCTGCTACCACCGT+CGG | 0.660358 | 1_3:-68783115 | Msa0136690:CDS |
| TCGGTTCAACTTTGACAAGG+AGG | 0.660849 | 1_3:-68783167 | Msa0136690:CDS |
| GAGAAGTTAATCATATACTG+TGG | 0.661411 | 1_3:-68778803 | Msa0136690:three_prime_UTR |
| GGTACTACTATGTGTTACAG+TGG | 0.680801 | 1_3:-68779120 | Msa0136690:CDS |
| CATCTAGGAAGTCTTCAATG+AGG | 0.689212 | 1_3:-68783044 | Msa0136690:CDS |
| TGTTTCCTAAGCATCAAGGG+AGG | 0.709220 | 1_3:-68779538 | Msa0136690:CDS |
| AGCTTGCGGAGTGATTGCAA+CGG | 0.716437 | 1_3:-68781030 | Msa0136690:CDS |
| CAGAAGGAACAATAACACTG+AGG | 0.765802 | 1_3:-68780950 | Msa0136690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATAGATGTTTATATT+TGG | - | chr1_3:68780538-68780557 | Msa0136690:intron | 10.0% |
| !! | AAAATAAGAATATGTAAAAA+GGG | + | chr1_3:68781625-68781644 | None:intergenic | 10.0% |
| !!! | ATAAAATAAAAAGTACTTTT+TGG | + | chr1_3:68783998-68784017 | None:intergenic | 10.0% |
| !!! | GTACTTTTTATTTTATTTTT+TGG | - | chr1_3:68784002-68784021 | Msa0136690:intron | 10.0% |
| !!! | AATATTTAACCATTTTCATA+AGG | - | chr1_3:68778776-68778795 | Msa0136690:three_prime_UTR | 15.0% |
| !!! | CTAAAGTTTATTTTGAAAAA+TGG | + | chr1_3:68779250-68779269 | None:intergenic | 15.0% |
| !! | AAATCAATTTCATTTCAAAT+TGG | + | chr1_3:68779350-68779369 | None:intergenic | 15.0% |
| !!! | TATTTTACTTTGTACATATT+CGG | + | chr1_3:68779610-68779629 | None:intergenic | 15.0% |
| !! | ATATGTACAAAGTAAAATAA+AGG | - | chr1_3:68779611-68779630 | Msa0136690:intron | 15.0% |
| !!! | GATAAATTTTCTTAAACTTT+TGG | + | chr1_3:68779903-68779922 | None:intergenic | 15.0% |
| !! | ATAAATATTTCAATTTCACT+AGG | + | chr1_3:68780525-68780544 | None:intergenic | 15.0% |
| !!! | ATTTTTCTCTATTCATAAAA+GGG | + | chr1_3:68781103-68781122 | None:intergenic | 15.0% |
| !!! | TAAATGTTTTATTCATGTTT+TGG | - | chr1_3:68781367-68781386 | Msa0136690:intron | 15.0% |
| !!! | AAATGTTTTATTCATGTTTT+GGG | - | chr1_3:68781368-68781387 | Msa0136690:intron | 15.0% |
| !! | GAAAATAAGAATATGTAAAA+AGG | + | chr1_3:68781626-68781645 | None:intergenic | 15.0% |
| !! | CATACAAATGAAAAATAAAA+AGG | + | chr1_3:68781692-68781711 | None:intergenic | 15.0% |
| !! | TGCATAATAATAGATATTTA+TGG | + | chr1_3:68781929-68781948 | None:intergenic | 15.0% |
| !! | ATAAATATCTATTATTATGC+AGG | - | chr1_3:68781928-68781947 | Msa0136690:intron | 15.0% |
| !!! | ATTTTATATAGCACTTATAA+AGG | + | chr1_3:68783057-68783076 | None:intergenic | 15.0% |
| !! | CAAAGAAGTAATTTAAATAG+CGG | - | chr1_3:68778701-68778720 | Msa0136690:three_prime_UTR | 20.0% |
| !! | TTTAATTCTTTCACACATTA+AGG | - | chr1_3:68778812-68778831 | Msa0136690:three_prime_UTR | 20.0% |
| !! | TTTCAAAATAAACTTTAGTG+AGG | - | chr1_3:68779252-68779271 | Msa0136690:intron | 20.0% |
| !!! | GCAAAATAGTGAATTTTTAT+TGG | - | chr1_3:68779277-68779296 | Msa0136690:intron | 20.0% |
| !! | ATCATATACTAACATTAGTA+AGG | + | chr1_3:68779808-68779827 | None:intergenic | 20.0% |
| !! | AGTATATGATCAATTTAACA+TGG | - | chr1_3:68779818-68779837 | Msa0136690:intron | 20.0% |
| !! | TTGGAAGAATAGTTATTTAA+TGG | - | chr1_3:68780557-68780576 | Msa0136690:intron | 20.0% |
| !! | ATGTAGCATATATATTTGAT+TGG | + | chr1_3:68780706-68780725 | None:intergenic | 20.0% |
| !! | TAATCAAACTTAAGTCTTTA+TGG | + | chr1_3:68780766-68780785 | None:intergenic | 20.0% |
| !!! | GTTCCTTTTTTAAGATTAAA+AGG | + | chr1_3:68781073-68781092 | None:intergenic | 20.0% |
| !!! | CATTTTTCTCTATTCATAAA+AGG | + | chr1_3:68781104-68781123 | None:intergenic | 20.0% |
| !!! | TGGTTTTAAATTAACTTTGA+TGG | + | chr1_3:68781648-68781667 | None:intergenic | 20.0% |
| !! | CAAATGAAAAATAAAAAGGA+AGG | + | chr1_3:68781688-68781707 | None:intergenic | 20.0% |
| !!! | ATTTTTCATTTGTATGATAC+AGG | - | chr1_3:68781696-68781715 | Msa0136690:CDS | 20.0% |
| !! | TGAATTCATTTATCTTGAAT+TGG | - | chr1_3:68781866-68781885 | Msa0136690:CDS | 20.0% |
| !! | TATAAAGGATATTTGGTAAA+TGG | + | chr1_3:68783042-68783061 | None:intergenic | 20.0% |
| !! | AAAAGTTAACTCAAAATTTG+GGG | + | chr1_3:68784368-68784387 | None:intergenic | 20.0% |
| !! | GAAAAGTTAACTCAAAATTT+GGG | + | chr1_3:68784369-68784388 | None:intergenic | 20.0% |
| !! | TGAAAAGTTAACTCAAAATT+TGG | + | chr1_3:68784370-68784389 | None:intergenic | 20.0% |
| !!! | AGTGATCAAATGTTTTATTT+AGG | - | chr1_3:68784536-68784555 | Msa0136690:five_prime_UTR | 20.0% |
| !!! | GTGATCAAATGTTTTATTTA+GGG | - | chr1_3:68784537-68784556 | Msa0136690:five_prime_UTR | 20.0% |
| !!! | TGATCAAATGTTTTATTTAG+GGG | - | chr1_3:68784538-68784557 | Msa0136690:five_prime_UTR | 20.0% |
| ! | CGCTATTTAAATTACTTCTT+TGG | + | chr1_3:68778703-68778722 | None:intergenic | 25.0% |
| ! | AAAACTTTGCCTTATGAAAA+TGG | + | chr1_3:68778788-68778807 | None:intergenic | 25.0% |
| !!! | TCATTTGTGTTTTGATTCTA+CGG | - | chr1_3:68778836-68778855 | Msa0136690:three_prime_UTR | 25.0% |
| !! | ATTCTGGGTAATTTTCTATA+AGG | - | chr1_3:68778891-68778910 | Msa0136690:three_prime_UTR | 25.0% |
| !! | AAAACATTGTTGATTATTGC+AGG | - | chr1_3:68778929-68778948 | Msa0136690:three_prime_UTR | 25.0% |
| !! | AAACATTGTTGATTATTGCA+GGG | - | chr1_3:68778930-68778949 | Msa0136690:three_prime_UTR | 25.0% |
| ! | TAGGCAAATAAACAATTCAT+TGG | + | chr1_3:68779156-68779175 | None:intergenic | 25.0% |
| ! | GAAGTAAGATGATTGATATT+TGG | - | chr1_3:68779386-68779405 | Msa0136690:intron | 25.0% |
| ! | CATACACTATATCTGATAAA+AGG | + | chr1_3:68779468-68779487 | None:intergenic | 25.0% |
| !! | TGTAGTTTTTATCAGAATCA+TGG | - | chr1_3:68779550-68779569 | Msa0136690:CDS | 25.0% |
| ! | AAAGTAAAATAAAGGTTTCG+AGG | - | chr1_3:68779619-68779638 | Msa0136690:intron | 25.0% |
| ! | AACATGACTTTAGTAAAATC+CGG | + | chr1_3:68779678-68779697 | None:intergenic | 25.0% |
| !! | GATTTTACTAAAGTCATGTT+TGG | - | chr1_3:68779678-68779697 | Msa0136690:CDS | 25.0% |
| !!! | ACAATCAATGGTTTTACTTA+AGG | - | chr1_3:68779747-68779766 | Msa0136690:intron | 25.0% |
| !!! | TTACTTAAGGTTTTAAACTG+TGG | - | chr1_3:68779760-68779779 | Msa0136690:intron | 25.0% |
| ! | GATGTTGTGATTAAAATTTC+AGG | - | chr1_3:68780011-68780030 | Msa0136690:CDS | 25.0% |
| ! | ATGAAACTAAATATCACACA+AGG | + | chr1_3:68780365-68780384 | None:intergenic | 25.0% |
| !!! | AATTTTTTAACCATTCACCA+AGG | + | chr1_3:68780411-68780430 | None:intergenic | 25.0% |
| ! | AAATTTGTCATTGAAAGAAG+AGG | - | chr1_3:68780426-68780445 | Msa0136690:intron | 25.0% |
| ! | TTGAAAGAAGAGGTAATTAA+TGG | - | chr1_3:68780436-68780455 | Msa0136690:intron | 25.0% |
| !!! | TAAGTTTTGTACATAAAGAG+AGG | + | chr1_3:68780600-68780619 | None:intergenic | 25.0% |
| ! | ACTTATGACTTGAATCATAT+AGG | - | chr1_3:68780615-68780634 | Msa0136690:intron | 25.0% |
| ! | ACTTAAGTCTTTATGGAAAT+GGG | + | chr1_3:68780759-68780778 | None:intergenic | 25.0% |
| ! | AACTTAAGTCTTTATGGAAA+TGG | + | chr1_3:68780760-68780779 | None:intergenic | 25.0% |
| !! | GAGAAATGTTCAATTTTACA+TGG | + | chr1_3:68780847-68780866 | None:intergenic | 25.0% |
| !!! | TTTTTAAGATTAAAAGGCAG+AGG | + | chr1_3:68781067-68781086 | None:intergenic | 25.0% |
| !! | CTGCCTTTTAATCTTAAAAA+AGG | - | chr1_3:68781067-68781086 | Msa0136690:intron | 25.0% |
| ! | ACATTTATACTACGTTATGA+TGG | + | chr1_3:68781354-68781373 | None:intergenic | 25.0% |
| ! | AGGTAAGACATAAGAAATAA+TGG | + | chr1_3:68781668-68781687 | None:intergenic | 25.0% |
| ! | GATACAGGTAATATTATACA+TGG | - | chr1_3:68781711-68781730 | Msa0136690:CDS | 25.0% |
| ! | TGCTATGACAAATAACAATA+AGG | + | chr1_3:68781758-68781777 | None:intergenic | 25.0% |
| !!! | AATTTAAGAGAGTATCTATC+TGG | - | chr1_3:68781793-68781812 | Msa0136690:CDS | 25.0% |
| ! | TCATAGATAAATCTAGTAGT+TGG | + | chr1_3:68781849-68781868 | None:intergenic | 25.0% |
| ! | TACAATTTCAAGATGAAAGT+GGG | + | chr1_3:68782522-68782541 | None:intergenic | 25.0% |
| ! | AAGAAACTTAAAAGAAATCG+TGG | + | chr1_3:68782727-68782746 | None:intergenic | 25.0% |
| ! | TCTTATTAAACTTTGCTACT+TGG | - | chr1_3:68782962-68782981 | Msa0136690:intron | 25.0% |
| ! | TAGCACTTATAAAGGATATT+TGG | + | chr1_3:68783049-68783068 | None:intergenic | 25.0% |
| ! | AAAATTAGAGCTAAGAGATA+AGG | + | chr1_3:68783112-68783131 | None:intergenic | 25.0% |
| ! | CAGACAAAATATTAAAGAGA+CGG | + | chr1_3:68783441-68783460 | None:intergenic | 25.0% |
| ! | AAAACAGTAAATTTACGACT+TGG | + | chr1_3:68783819-68783838 | None:intergenic | 25.0% |
| ! | CTTGTAACAAAAACATATGA+TGG | + | chr1_3:68784064-68784083 | None:intergenic | 25.0% |
| ! | GAGAAATGGTTCAAAATATT+TGG | + | chr1_3:68784088-68784107 | None:intergenic | 25.0% |
| ! | GAAAAAAAAGATAGTCAGAT+TGG | + | chr1_3:68784132-68784151 | None:intergenic | 25.0% |
| !!! | TTTCCTTTTCATATTTCTAC+AGG | - | chr1_3:68784148-68784167 | Msa0136690:intron | 25.0% |
| !! | TCTAAAACAGTTATATGAAC+TGG | + | chr1_3:68784330-68784349 | None:intergenic | 25.0% |
| ! | CACAAGTAAAAGTAACAAAA+TGG | + | chr1_3:68784408-68784427 | None:intergenic | 25.0% |
| !!! | CATTTTGTTACTTTTACTTG+TGG | - | chr1_3:68784406-68784425 | Msa0136690:intron | 25.0% |
| !!! | CAAAACTTTGTTTTGTGATA+TGG | + | chr1_3:68784449-68784468 | None:intergenic | 25.0% |
| !!! | AATTTTGATGCATAGAATTG+TGG | - | chr1_3:68784562-68784581 | Msa0136690:five_prime_UTR | 25.0% |
| !!! | CATTTGTGTTTTGATTCTAC+GGG | - | chr1_3:68778837-68778856 | Msa0136690:three_prime_UTR | 30.0% |
| ! | TTTGTTGTGATTTGTGATTC+TGG | - | chr1_3:68778875-68778894 | Msa0136690:three_prime_UTR | 30.0% |
| ! | TTGTTGTGATTTGTGATTCT+GGG | - | chr1_3:68778876-68778895 | Msa0136690:three_prime_UTR | 30.0% |
| ATGTAAAAACCTTGATCTGA+AGG | + | chr1_3:68778977-68778996 | None:intergenic | 30.0% | |
| TTCATTCTCATCAGAATCAT+TGG | + | chr1_3:68779068-68779087 | None:intergenic | 30.0% | |
| AATGATTCTGATGAGAATGA+AGG | - | chr1_3:68779067-68779086 | Msa0136690:CDS | 30.0% | |
| GAAAAATGGTTGTATCTCAT+TGG | + | chr1_3:68779236-68779255 | None:intergenic | 30.0% | |
| CAAAATAAACTTTAGTGAGG+TGG | - | chr1_3:68779255-68779274 | Msa0136690:intron | 30.0% | |
| ATCAGAATCATGGTAGAAAA+TGG | - | chr1_3:68779560-68779579 | Msa0136690:CDS | 30.0% | |
| GAAAATGGTGTTTCATCAAA+CGG | - | chr1_3:68779575-68779594 | Msa0136690:intron | 30.0% | |
| TACTTTGTACATATTCGGAT+TGG | + | chr1_3:68779605-68779624 | None:intergenic | 30.0% | |
| ACATGACTTTAGTAAAATCC+GGG | + | chr1_3:68779677-68779696 | None:intergenic | 30.0% | |
| !! | AAGGCATGATTTTTCAGAAA+GGG | + | chr1_3:68779789-68779808 | None:intergenic | 30.0% |
| !! | TAAGGCATGATTTTTCAGAA+AGG | + | chr1_3:68779790-68779809 | None:intergenic | 30.0% |
| CTTCAGTTTATAGTGAAAAC+AGG | - | chr1_3:68779856-68779875 | Msa0136690:intron | 30.0% | |
| GTTCCAAGAAATCCTATATT+CGG | + | chr1_3:68780070-68780089 | None:intergenic | 30.0% | |
| TGAACTTCATGAGATATCTT+GGG | + | chr1_3:68780280-68780299 | None:intergenic | 30.0% | |
| ATGAACTTCATGAGATATCT+TGG | + | chr1_3:68780281-68780300 | None:intergenic | 30.0% | |
| ACATAACAGATGAAGCTTAT+AGG | + | chr1_3:68780888-68780907 | None:intergenic | 30.0% | |
| GTTATGTGAAGGTAAAATGT+TGG | - | chr1_3:68780901-68780920 | Msa0136690:CDS | 30.0% | |
| ! | TTTTCAGCACACTTTCTTAT+CGG | - | chr1_3:68780993-68781012 | Msa0136690:CDS | 30.0% |
| ! | ACTCTTTTATCAGACTCATT+TGG | + | chr1_3:68781026-68781045 | None:intergenic | 30.0% |
| CAAGTAATCATTAGACAGTT+AGG | + | chr1_3:68781289-68781308 | None:intergenic | 30.0% | |
| TAATCCTTCCTTAACTGATA+TGG | - | chr1_3:68781318-68781337 | Msa0136690:CDS | 30.0% | |
| ! | TCCAAATGCACATTTAAGTT+TGG | - | chr1_3:68782003-68782022 | Msa0136690:intron | 30.0% |
| ! | CCAAATGCACATTTAAGTTT+GGG | - | chr1_3:68782004-68782023 | Msa0136690:intron | 30.0% |
| ATATGTAACTTAGAATGCGA+AGG | + | chr1_3:68782108-68782127 | None:intergenic | 30.0% | |
| CTACAATTTCAAGATGAAAG+TGG | + | chr1_3:68782523-68782542 | None:intergenic | 30.0% | |
| ACTTAAAAGAAATCGTGGTT+GGG | + | chr1_3:68782722-68782741 | None:intergenic | 30.0% | |
| AACTTAAAAGAAATCGTGGT+TGG | + | chr1_3:68782723-68782742 | None:intergenic | 30.0% | |
| ! | TTAGAGGGTACATAAATTAG+AGG | + | chr1_3:68783211-68783230 | None:intergenic | 30.0% |
| !! | CATCCATTTTTCATCTTAGA+GGG | + | chr1_3:68783226-68783245 | None:intergenic | 30.0% |
| !! | ACATCCATTTTTCATCTTAG+AGG | + | chr1_3:68783227-68783246 | None:intergenic | 30.0% |
| AACTGAAAGTTGGGATTATT+TGG | + | chr1_3:68783322-68783341 | None:intergenic | 30.0% | |
| ! | TGATTTTATTGTTGCACTGT+TGG | - | chr1_3:68783552-68783571 | Msa0136690:intron | 30.0% |
| !! | GGTTTGGTAATGTCATTAAT+CGG | - | chr1_3:68783589-68783608 | Msa0136690:intron | 30.0% |
| !! | GTTTGGTAATGTCATTAATC+GGG | - | chr1_3:68783590-68783609 | Msa0136690:intron | 30.0% |
| CTGAATCAAACAGTTAATGA+AGG | + | chr1_3:68783645-68783664 | None:intergenic | 30.0% | |
| TATCGGGTTTAAGTAAACAA+AGG | - | chr1_3:68783937-68783956 | Msa0136690:intron | 30.0% | |
| CATAACTATAGAACGAGAAA+TGG | + | chr1_3:68784102-68784121 | None:intergenic | 30.0% | |
| AAAAAAGATAGTCAGATTGG+CGG | + | chr1_3:68784129-68784148 | None:intergenic | 30.0% | |
| GTACCTGTAGAAATATGAAA+AGG | + | chr1_3:68784154-68784173 | None:intergenic | 30.0% | |
| ! | AATGTTTGCATGAAGTTTTG+CGG | - | chr1_3:68784256-68784275 | Msa0136690:CDS | 30.0% |
| AACTTCTCCAAACTTCAAAA+CGG | + | chr1_3:68784474-68784493 | None:intergenic | 30.0% | |
| GAGAAGTTAATCATATACTG+TGG | - | chr1_3:68784486-68784505 | Msa0136690:five_prime_UTR | 30.0% | |
| ACTTCAAACAATCTCAGATT+TGG | + | chr1_3:68784519-68784538 | None:intergenic | 30.0% | |
| TTGATGAATGCGACTCAAAA+GGG | + | chr1_3:68778758-68778777 | None:intergenic | 35.0% | |
| ATTGATGAATGCGACTCAAA+AGG | + | chr1_3:68778759-68778778 | None:intergenic | 35.0% | |
| AAGAATTCACCTTCAGATCA+AGG | - | chr1_3:68778965-68778984 | Msa0136690:three_prime_UTR | 35.0% | |
| AAGTTACAGGTGAGTTACTT+CGG | - | chr1_3:68779129-68779148 | Msa0136690:intron | 35.0% | |
| CCTATCATGTTTCATGCAAT+AGG | + | chr1_3:68779175-68779194 | None:intergenic | 35.0% | |
| CCTATTGCATGAAACATGAT+AGG | - | chr1_3:68779172-68779191 | Msa0136690:intron | 35.0% | |
| AAAACCAAGCACACAATCAA+TGG | - | chr1_3:68779735-68779754 | Msa0136690:intron | 35.0% | |
| ! | AAAACCATTGATTGTGTGCT+TGG | + | chr1_3:68779742-68779761 | None:intergenic | 35.0% |
| ! | TTGACGCATTTAACTTAAGG+TGG | + | chr1_3:68779974-68779993 | None:intergenic | 35.0% |
| ! | GGTTTGACGCATTTAACTTA+AGG | + | chr1_3:68779977-68779996 | None:intergenic | 35.0% |
| CAACATCAGAACTAGATTTC+AGG | + | chr1_3:68779998-68780017 | None:intergenic | 35.0% | |
| ATTTCTTGGAACAACGTCAT+TGG | - | chr1_3:68780078-68780097 | Msa0136690:intron | 35.0% | |
| ! | AGATTAGGCAGTTCTTTTCT+CGG | - | chr1_3:68780103-68780122 | Msa0136690:intron | 35.0% |
| ! | TCTCATGAAGTTCATTTTCC+TGG | - | chr1_3:68780286-68780305 | Msa0136690:intron | 35.0% |
| ! | TTGATTGGTTATTGCGAAGA+TGG | + | chr1_3:68780691-68780710 | None:intergenic | 35.0% |
| GCATATGTGAATGTTGCAAA+TGG | - | chr1_3:68780802-68780821 | Msa0136690:intron | 35.0% | |
| TATGTGAATGTTGCAAATGG+TGG | - | chr1_3:68780805-68780824 | Msa0136690:intron | 35.0% | |
| AAGCTTCATCTGTTATGTGA+AGG | - | chr1_3:68780890-68780909 | Msa0136690:CDS | 35.0% | |
| GCCATCATTCTCTAACTAAT+TGG | - | chr1_3:68781263-68781282 | Msa0136690:CDS | 35.0% | |
| GCCAATTAGTTAGAGAATGA+TGG | + | chr1_3:68781267-68781286 | None:intergenic | 35.0% | |
| CTATCACACCATATCAGTTA+AGG | + | chr1_3:68781329-68781348 | None:intergenic | 35.0% | |
| ATAAATGCTCTTTGTGGTGT+GGG | - | chr1_3:68781404-68781423 | Msa0136690:intron | 35.0% | |
| ! | TCAGTATTTTCCTTCTACAC+TGG | - | chr1_3:68781494-68781513 | Msa0136690:intron | 35.0% |
| CTTGAAACTTATCCTGACAT+TGG | - | chr1_3:68781554-68781573 | Msa0136690:intron | 35.0% | |
| CCCAAACTTAAATGTGCATT+TGG | + | chr1_3:68782007-68782026 | None:intergenic | 35.0% | |
| ! | AATGCACATTTAAGTTTGGG+TGG | - | chr1_3:68782007-68782026 | Msa0136690:intron | 35.0% |
| CGCATTCTAAGTTACATATC+AGG | - | chr1_3:68782109-68782128 | Msa0136690:intron | 35.0% | |
| ATTGTTCCTTCTGTATGCAT+GGG | + | chr1_3:68782332-68782351 | None:intergenic | 35.0% | |
| TATTGTTCCTTCTGTATGCA+TGG | + | chr1_3:68782333-68782352 | None:intergenic | 35.0% | |
| !! | ACCAAGTCAAGAGTACTTTA+GGG | + | chr1_3:68782466-68782485 | None:intergenic | 35.0% |
| !! | TACCAAGTCAAGAGTACTTT+AGG | + | chr1_3:68782467-68782486 | None:intergenic | 35.0% |
| ! | CTGACAATGTGTTTCTAAGT+GGG | - | chr1_3:68782652-68782671 | Msa0136690:intron | 35.0% |
| ! | TGACAATGTGTTTCTAAGTG+GGG | - | chr1_3:68782653-68782672 | Msa0136690:intron | 35.0% |
| TATACTCTTAACATGCCTCA+AGG | - | chr1_3:68782864-68782883 | Msa0136690:intron | 35.0% | |
| !!! | TATCGTGTGTTTTGTTTTGC+AGG | - | chr1_3:68783008-68783027 | Msa0136690:CDS | 35.0% |
| ATTAGAGCTAAGAGATAAGG+TGG | + | chr1_3:68783109-68783128 | None:intergenic | 35.0% | |
| !! | GTACCCTCTAAGATGAAAAA+TGG | - | chr1_3:68783220-68783239 | Msa0136690:CDS | 35.0% |
| AGTTAGACTCAAAGCATATG+TGG | + | chr1_3:68783266-68783285 | None:intergenic | 35.0% | |
| TGAAAGTTGGGATTATTTGG+TGG | + | chr1_3:68783319-68783338 | None:intergenic | 35.0% | |
| ATGGAGTAGAACTGAAAGTT+GGG | + | chr1_3:68783331-68783350 | None:intergenic | 35.0% | |
| ACGAAAGACTAACCGAAAAA+GGG | + | chr1_3:68783406-68783425 | None:intergenic | 35.0% | |
| AACGAAAGACTAACCGAAAA+AGG | + | chr1_3:68783407-68783426 | None:intergenic | 35.0% | |
| !! | CTGTTGGATTATGTTTTTGC+AGG | - | chr1_3:68783568-68783587 | Msa0136690:intron | 35.0% |
| !! | GGATTATGTTTTTGCAGGTT+TGG | - | chr1_3:68783573-68783592 | Msa0136690:intron | 35.0% |
| AGAATAAGGGACTGCATTAA+TGG | + | chr1_3:68783721-68783740 | None:intergenic | 35.0% | |
| ACAAGCAGATGGTAGAATAA+GGG | + | chr1_3:68783734-68783753 | None:intergenic | 35.0% | |
| AACAAGCAGATGGTAGAATA+AGG | + | chr1_3:68783735-68783754 | None:intergenic | 35.0% | |
| ! | AGCTTTAGTCTGTTGATACA+TGG | - | chr1_3:68783913-68783932 | Msa0136690:intron | 35.0% |
| GTCTGTTGATACATGGTTAT+CGG | - | chr1_3:68783920-68783939 | Msa0136690:intron | 35.0% | |
| TCTGTTGATACATGGTTATC+GGG | - | chr1_3:68783921-68783940 | Msa0136690:intron | 35.0% | |
| ! | TTTTTGGATCGATATCAGCA+CGG | + | chr1_3:68783982-68784001 | None:intergenic | 35.0% |
| GTACTTCTGTTATGTAGAAC+TGG | - | chr1_3:68784034-68784053 | Msa0136690:intron | 35.0% | |
| TGTGTTACAGTGGTTATAGT+AGG | - | chr1_3:68784179-68784198 | Msa0136690:CDS | 35.0% | |
| ! | ATAGTAGGTCTTGTATCATG+CGG | - | chr1_3:68784194-68784213 | Msa0136690:CDS | 35.0% |
| GCAGACAAATGTCATAATTC+AGG | + | chr1_3:68784289-68784308 | None:intergenic | 35.0% | |
| CAGTTATATGAACTGGAATC+TGG | + | chr1_3:68784323-68784342 | None:intergenic | 35.0% | |
| ! | GTTAACTCAAAATTTGGGGT+TGG | + | chr1_3:68784364-68784383 | None:intergenic | 35.0% |
| ! | AGTTAACTTTTCACTCTCAG+TGG | - | chr1_3:68784377-68784396 | Msa0136690:intron | 35.0% |
| !!! | TTTTGCTCCGTTTTGAAGTT+TGG | - | chr1_3:68784464-68784483 | Msa0136690:intron | 35.0% |
| GAGTGATGAAGATGAAGAGA+AGG | - | chr1_3:68779000-68779019 | Msa0136690:three_prime_UTR | 40.0% | |
| ! | TGAAGATGAAGAGAAGGTGT+TGG | - | chr1_3:68779006-68779025 | Msa0136690:three_prime_UTR | 40.0% |
| !! | GAAGATGAAGAGAAGGTGTT+GGG | - | chr1_3:68779007-68779026 | Msa0136690:three_prime_UTR | 40.0% |
| GTAACTCACCTGTAACTTTG+AGG | + | chr1_3:68779127-68779146 | None:intergenic | 40.0% | |
| TTAGTAAAATCCGGGATGGT+TGG | + | chr1_3:68779669-68779688 | None:intergenic | 40.0% | |
| GACTTTAGTAAAATCCGGGA+TGG | + | chr1_3:68779673-68779692 | None:intergenic | 40.0% | |
| AGGCAATCCATTGATCTGTA+TGG | - | chr1_3:68780031-68780050 | Msa0136690:CDS | 40.0% | |
| AGAAATCCTATATTCGGCGA+TGG | + | chr1_3:68780064-68780083 | None:intergenic | 40.0% | |
| TCGCCGAATATAGGATTTCT+TGG | - | chr1_3:68780064-68780083 | Msa0136690:intron | 40.0% | |
| ACAACGTCATTGGCAAGATT+AGG | - | chr1_3:68780088-68780107 | Msa0136690:intron | 40.0% | |
| TTCTCGGTTCAACTTTGACA+AGG | - | chr1_3:68780119-68780138 | Msa0136690:intron | 40.0% | |
| GAAGCAATATCTGAGAGCTA+CGG | + | chr1_3:68780216-68780235 | None:intergenic | 40.0% | |
| TGAAGACTTCCTAGATGGTA+GGG | + | chr1_3:68780242-68780261 | None:intergenic | 40.0% | |
| TTGAAGACTTCCTAGATGGT+AGG | + | chr1_3:68780243-68780262 | None:intergenic | 40.0% | |
| CTCATTGAAGACTTCCTAGA+TGG | + | chr1_3:68780247-68780266 | None:intergenic | 40.0% | |
| CATCTAGGAAGTCTTCAATG+AGG | - | chr1_3:68780245-68780264 | Msa0136690:intron | 40.0% | |
| TAGGAAGTCTTCAATGAGGA+AGG | - | chr1_3:68780249-68780268 | Msa0136690:CDS | 40.0% | |
| ! | TTTCCTGGTCAATGCACTTT+TGG | - | chr1_3:68780301-68780320 | Msa0136690:intron | 40.0% |
| TTTGGACAAGCTGTGCTTAA+TGG | - | chr1_3:68780319-68780338 | Msa0136690:intron | 40.0% | |
| ATATCAACCCCTCTTTACCT+TGG | - | chr1_3:68780391-68780410 | Msa0136690:intron | 40.0% | |
| ACCATTCACCAAGGTAAAGA+GGG | + | chr1_3:68780402-68780421 | None:intergenic | 40.0% | |
| AACCATTCACCAAGGTAAAG+AGG | + | chr1_3:68780403-68780422 | None:intergenic | 40.0% | |
| TCGACATAATAGCCCTTGAA+AGG | - | chr1_3:68780947-68780966 | Msa0136690:CDS | 40.0% | |
| TAATAGCCCTTGAAAGGCTA+CGG | - | chr1_3:68780953-68780972 | Msa0136690:CDS | 40.0% | |
| ! | TTTTGTCCGTAGCCTTTCAA+GGG | + | chr1_3:68780962-68780981 | None:intergenic | 40.0% |
| ! | TTTTTGTCCGTAGCCTTTCA+AGG | + | chr1_3:68780963-68780982 | None:intergenic | 40.0% |
| CACACCATATCAGTTAAGGA+AGG | + | chr1_3:68781325-68781344 | None:intergenic | 40.0% | |
| CATAAATGCTCTTTGTGGTG+TGG | - | chr1_3:68781403-68781422 | Msa0136690:intron | 40.0% | |
| ! | CACCTTCTTTGAGAGCATAA+GGG | + | chr1_3:68781442-68781461 | None:intergenic | 40.0% |
| ! | TCAGGATAAGTTTCAAGTCC+AGG | + | chr1_3:68781551-68781570 | None:intergenic | 40.0% |
| GTTTGCAATCTTGAGCACAT+TGG | - | chr1_3:68782054-68782073 | Msa0136690:intron | 40.0% | |
| CAGAAGGAACAATAACACTG+AGG | - | chr1_3:68782339-68782358 | Msa0136690:intron | 40.0% | |
| CCATAGCTGTATACAGATTC+GGG | + | chr1_3:68782427-68782446 | None:intergenic | 40.0% | |
| GCCATAGCTGTATACAGATT+CGG | + | chr1_3:68782428-68782447 | None:intergenic | 40.0% | |
| ! | TCCCTAAAGTACTCTTGACT+TGG | - | chr1_3:68782462-68782481 | Msa0136690:intron | 40.0% |
| TTAAGAGTCCCACATCTGAT+AGG | - | chr1_3:68782622-68782641 | Msa0136690:intron | 40.0% | |
| CCACTTAGAAACACATTGTC+AGG | + | chr1_3:68782654-68782673 | None:intergenic | 40.0% | |
| ! | CCTGACAATGTGTTTCTAAG+TGG | - | chr1_3:68782651-68782670 | Msa0136690:intron | 40.0% |
| ! | GACAATGTGTTTCTAAGTGG+GGG | - | chr1_3:68782654-68782673 | Msa0136690:intron | 40.0% |
| !! | ACTTCACAAGCCAGTTTTGT+GGG | - | chr1_3:68782685-68782704 | Msa0136690:intron | 40.0% |
| TATTTCACCGTAGCTGTTGT+GGG | - | chr1_3:68782807-68782826 | Msa0136690:intron | 40.0% | |
| GTTGTGGGATACTCAATGTT+TGG | - | chr1_3:68782822-68782841 | Msa0136690:intron | 40.0% | |
| GATGGAGTAGAACTGAAAGT+TGG | + | chr1_3:68783332-68783351 | None:intergenic | 40.0% | |
| AACCGAAAAAGGGAACTGAA+AGG | + | chr1_3:68783396-68783415 | None:intergenic | 40.0% | |
| ATGCTTAGGAAACAAGCAGA+TGG | + | chr1_3:68783745-68783764 | None:intergenic | 40.0% | |
| TGCTTGTTTCCTAAGCATCA+AGG | - | chr1_3:68783747-68783766 | Msa0136690:intron | 40.0% | |
| GCTTGTTTCCTAAGCATCAA+GGG | - | chr1_3:68783748-68783767 | Msa0136690:intron | 40.0% | |
| ! | TTTTCCAGATGCAAGTCGTT+TGG | + | chr1_3:68783872-68783891 | None:intergenic | 40.0% |
| GGTACTACTATGTGTTACAG+TGG | - | chr1_3:68784169-68784188 | Msa0136690:intron | 40.0% | |
| GATGCATAGAATTGTGGATG+AGG | - | chr1_3:68784568-68784587 | Msa0136690:five_prime_UTR | 40.0% | |
| TTGGGAAGAGGAGAGAATGA+TGG | - | chr1_3:68779025-68779044 | Msa0136690:exon | 45.0% | |
| CTGATGAGAATGAAGGAGAG+AGG | - | chr1_3:68779074-68779093 | Msa0136690:CDS | 45.0% | |
| CATGCCATGCTGTAAGAACT+GGG | + | chr1_3:68779103-68779122 | None:intergenic | 45.0% | |
| TAAAATCCGGGATGGTTGGT+TGG | + | chr1_3:68779665-68779684 | None:intergenic | 45.0% | |
| CACGCTACCATACAGATCAA+TGG | + | chr1_3:68780041-68780060 | None:intergenic | 45.0% | |
| TCGGTTCAACTTTGACAAGG+AGG | - | chr1_3:68780122-68780141 | Msa0136690:intron | 45.0% | |
| GGCTGTAAAGTTTCAGCAGT+TGG | + | chr1_3:68780148-68780167 | None:intergenic | 45.0% | |
| GAAGACTTCCTAGATGGTAG+GGG | + | chr1_3:68780241-68780260 | None:intergenic | 45.0% | |
| ! | TGTCCAAAAGTGCATTGACC+AGG | + | chr1_3:68780307-68780326 | None:intergenic | 45.0% |
| CCATTCACCAAGGTAAAGAG+GGG | + | chr1_3:68780401-68780420 | None:intergenic | 45.0% | |
| TCAAGGGCTATTATGTCGAG+TGG | + | chr1_3:68780946-68780965 | None:intergenic | 45.0% | |
| !!! | CATGTTTTGGGTTTTGCTGC+AGG | - | chr1_3:68781380-68781399 | Msa0136690:intron | 45.0% |
| GCAGGCATAAATGCTCTTTG+TGG | - | chr1_3:68781398-68781417 | Msa0136690:intron | 45.0% | |
| ! | TGAGAGCATAAGGGACTGAA+AGG | + | chr1_3:68781433-68781452 | None:intergenic | 45.0% |
| GTCCCTTATGCTCTCAAAGA+AGG | - | chr1_3:68781437-68781456 | Msa0136690:intron | 45.0% | |
| ! | CCACCTTCTTTGAGAGCATA+AGG | + | chr1_3:68781443-68781462 | None:intergenic | 45.0% |
| CCTTATGCTCTCAAAGAAGG+TGG | - | chr1_3:68781440-68781459 | Msa0136690:intron | 45.0% | |
| ATGCTCTCAAAGAAGGTGGA+TGG | - | chr1_3:68781444-68781463 | Msa0136690:intron | 45.0% | |
| TGCTCTCAAAGAAGGTGGAT+GGG | - | chr1_3:68781445-68781464 | Msa0136690:intron | 45.0% | |
| !! | CTTGCTGTTGCGTTATTGCT+TGG | - | chr1_3:68781517-68781536 | Msa0136690:intron | 45.0% |
| TATTGCTTGGACAGTCAACC+TGG | - | chr1_3:68781530-68781549 | Msa0136690:intron | 45.0% | |
| !! | CATAAGTACCGAAAGCAGCT+TGG | + | chr1_3:68781580-68781599 | None:intergenic | 45.0% |
| ! | CAAGCTGCTTTCGGTACTTA+TGG | - | chr1_3:68781578-68781597 | Msa0136690:intron | 45.0% |
| AACTTAGAATGCGAAGGTCC+CGG | + | chr1_3:68782102-68782121 | None:intergenic | 45.0% | |
| TCTTCTGTTGTACCAGCTTG+CGG | - | chr1_3:68782245-68782264 | Msa0136690:intron | 45.0% | |
| AGTGATTGCAACGGTTGTAG+TGG | - | chr1_3:68782268-68782287 | Msa0136690:intron | 45.0% | |
| ! | TAGTGGTACTGTGCTTGTTG+TGG | - | chr1_3:68782285-68782304 | Msa0136690:intron | 45.0% |
| !! | AGTGGTACTGTGCTTGTTGT+GGG | - | chr1_3:68782286-68782305 | Msa0136690:intron | 45.0% |
| GATGTTCCCATGCATACAGA+AGG | - | chr1_3:68782323-68782342 | Msa0136690:intron | 45.0% | |
| TCAACATTCCCTGTTGCTGT+TGG | - | chr1_3:68782365-68782384 | Msa0136690:intron | 45.0% | |
| CATAGAGACCAACAGCAACA+GGG | + | chr1_3:68782376-68782395 | None:intergenic | 45.0% | |
| CTCTATGGTTATTGCTTCGC+AGG | - | chr1_3:68782389-68782408 | Msa0136690:intron | 45.0% | |
| CCCGAATCTGTATACAGCTA+TGG | - | chr1_3:68782424-68782443 | Msa0136690:intron | 45.0% | |
| !! | AGGAGTGTCTGTGCTTCATA+GGG | + | chr1_3:68782571-68782590 | None:intergenic | 45.0% |
| CACAGACACTCCTCAGATTA+GGG | - | chr1_3:68782578-68782597 | Msa0136690:intron | 45.0% | |
| ACAGACACTCCTCAGATTAG+GGG | - | chr1_3:68782579-68782598 | Msa0136690:intron | 45.0% | |
| TCTTAACAGTGTCCGATACC+GGG | + | chr1_3:68782608-68782627 | None:intergenic | 45.0% | |
| CTCTTAACAGTGTCCGATAC+CGG | + | chr1_3:68782609-68782628 | None:intergenic | 45.0% | |
| GGCTATCTCCTATCAGATGT+GGG | + | chr1_3:68782633-68782652 | None:intergenic | 45.0% | |
| AGGCTATCTCCTATCAGATG+TGG | + | chr1_3:68782634-68782653 | None:intergenic | 45.0% | |
| !! | CAAAACTGGCTTGTGAAGTG+AGG | + | chr1_3:68782684-68782703 | None:intergenic | 45.0% |
| ! | CACTTCACAAGCCAGTTTTG+TGG | - | chr1_3:68782684-68782703 | Msa0136690:intron | 45.0% |
| !! | CTTCACAAGCCAGTTTTGTG+GGG | - | chr1_3:68782686-68782705 | Msa0136690:intron | 45.0% |
| CTAACACAACCCCACAAAAC+TGG | + | chr1_3:68782698-68782717 | None:intergenic | 45.0% | |
| !! | CAGTTTTGTGGGGTTGTGTT+AGG | - | chr1_3:68782696-68782715 | Msa0136690:intron | 45.0% |
| GTATTTCACCGTAGCTGTTG+TGG | - | chr1_3:68782806-68782825 | Msa0136690:intron | 45.0% | |
| TGAGTATCCCACAACAGCTA+CGG | + | chr1_3:68782817-68782836 | None:intergenic | 45.0% | |
| TTGGAGGCTACTAATCCTTG+AGG | + | chr1_3:68782882-68782901 | None:intergenic | 45.0% | |
| ! | CAAGATTGCTGTGTGGACTA+CGG | - | chr1_3:68782899-68782918 | Msa0136690:intron | 45.0% |
| !!! | CGTGTGTTTTGTTTTGCAGG+TGG | - | chr1_3:68783011-68783030 | Msa0136690:CDS | 45.0% |
| TCCAGTAGCATTGTCACTAG+AGG | - | chr1_3:68783285-68783304 | Msa0136690:intron | 45.0% | |
| TCCTCTAGTGACAATGCTAC+TGG | + | chr1_3:68783289-68783308 | None:intergenic | 45.0% | |
| ! | TAGTGCTGTTCTGATGCAGA+TGG | + | chr1_3:68783350-68783369 | None:intergenic | 45.0% |
| GTGGTTTCTACACTGCTTGT+TGG | - | chr1_3:68783370-68783389 | Msa0136690:intron | 45.0% | |
| ! | GGCCTTTCAGTTCCCTTTTT+CGG | - | chr1_3:68783391-68783410 | Msa0136690:intron | 45.0% |
| TGTTTCCTAAGCATCAAGGG+AGG | - | chr1_3:68783751-68783770 | Msa0136690:intron | 45.0% | |
| CAATCCAAACGACTTGCATC+TGG | - | chr1_3:68783865-68783884 | Msa0136690:intron | 45.0% | |
| !! | GGTCTTGTATCATGCGGTTT+TGG | - | chr1_3:68784200-68784219 | Msa0136690:CDS | 45.0% |
| TGGATCATACTCAGCCATCT+CGG | - | chr1_3:68784220-68784239 | Msa0136690:CDS | 45.0% | |
| TTCTGCAATCATCTCCGAGA+TGG | + | chr1_3:68784237-68784256 | None:intergenic | 45.0% | |
| !! | GAAGAGAAGGTGTTGGGAAG+AGG | - | chr1_3:68779013-68779032 | Msa0136690:three_prime_UTR | 50.0% |
| GAGACCCAGTTCTTACAGCA+TGG | - | chr1_3:68779096-68779115 | Msa0136690:CDS | 50.0% | |
| CCATGCCATGCTGTAAGAAC+TGG | + | chr1_3:68779104-68779123 | None:intergenic | 50.0% | |
| CCAGTTCTTACAGCATGGCA+TGG | - | chr1_3:68779101-68779120 | Msa0136690:CDS | 50.0% | |
| TGGCATGGCCTCAAAGTTAC+AGG | - | chr1_3:68779116-68779135 | Msa0136690:CDS | 50.0% | |
| !! | GGTAGCAGAGGCTTTTTCTC+TGG | + | chr1_3:68780169-68780188 | None:intergenic | 50.0% |
| CCCCTCTTTACCTTGGTGAA+TGG | - | chr1_3:68780398-68780417 | Msa0136690:intron | 50.0% | |
| CAACAGCAAGCCAGTGTAGA+AGG | + | chr1_3:68781507-68781526 | None:intergenic | 50.0% | |
| AAAGCAGCTTGGCCAATGTC+AGG | + | chr1_3:68781569-68781588 | None:intergenic | 50.0% | |
| ! | GACATTGGCCAAGCTGCTTT+CGG | - | chr1_3:68781569-68781588 | Msa0136690:intron | 50.0% |
| TGGCTATTCTTCCCACCGTT+TGG | - | chr1_3:68782074-68782093 | Msa0136690:intron | 50.0% | |
| AGCTTGCGGAGTGATTGCAA+CGG | - | chr1_3:68782259-68782278 | Msa0136690:intron | 50.0% | |
| !! | GTACTGTGCTTGTTGTGGGT+TGG | - | chr1_3:68782290-68782309 | Msa0136690:intron | 50.0% |
| CCATAGAGACCAACAGCAAC+AGG | + | chr1_3:68782377-68782396 | None:intergenic | 50.0% | |
| ! | CCTGTTGCTGTTGGTCTCTA+TGG | - | chr1_3:68782374-68782393 | Msa0136690:intron | 50.0% |
| !! | GAGGAGTGTCTGTGCTTCAT+AGG | + | chr1_3:68782572-68782591 | None:intergenic | 50.0% |
| GCACAGACACTCCTCAGATT+AGG | - | chr1_3:68782577-68782596 | Msa0136690:intron | 50.0% | |
| TAGCCTCCAAGATTGCTGTG+TGG | - | chr1_3:68782892-68782911 | Msa0136690:intron | 50.0% | |
| AGTCCACACAGCAATCTTGG+AGG | + | chr1_3:68782898-68782917 | None:intergenic | 50.0% | |
| CGTAGTCCACACAGCAATCT+TGG | + | chr1_3:68782901-68782920 | None:intergenic | 50.0% | |
| CTGCATCAGAACAGCACTAG+TGG | - | chr1_3:68783351-68783370 | Msa0136690:intron | 50.0% | |
| TTCTGCCTCCCTTGATGCTT+AGG | + | chr1_3:68783759-68783778 | None:intergenic | 50.0% | |
| AGCGTGCCATCGCCGAATAT+AGG | - | chr1_3:68780055-68780074 | Msa0136690:intron | 55.0% | |
| AAAGCCTCTGCTACCACCGT+CGG | - | chr1_3:68780174-68780193 | Msa0136690:intron | 55.0% | |
| TGCTTCCTCCCCTACCATCT+AGG | - | chr1_3:68780230-68780249 | Msa0136690:intron | 55.0% | |
| GACTTCCTAGATGGTAGGGG+AGG | + | chr1_3:68780238-68780257 | None:intergenic | 55.0% | |
| ! | TTCTTCCCACCGTTTGGCTC+CGG | - | chr1_3:68782080-68782099 | Msa0136690:intron | 55.0% |
| GTTGCAATCACTCCGCAAGC+TGG | + | chr1_3:68782260-68782279 | None:intergenic | 55.0% | |
| !! | GTGCTTGTTGTGGGTTGGAG+TGG | - | chr1_3:68782295-68782314 | Msa0136690:intron | 55.0% |
| !! | TCCTCAGATTAGGGGTGTCC+CGG | - | chr1_3:68782587-68782606 | Msa0136690:intron | 55.0% |
| !! | GATTAGGGGTGTCCCGGTAT+CGG | - | chr1_3:68782593-68782612 | Msa0136690:intron | 55.0% |
| AGGCAGAATCAAGCGCTCTC+AGG | - | chr1_3:68783771-68783790 | Msa0136690:intron | 55.0% | |
| CTCACGCCAACCAACCATCC+CGG | - | chr1_3:68779656-68779675 | Msa0136690:intron | 60.0% | |
| CGATGCTGCTCATCGACCGA+CGG | + | chr1_3:68780193-68780212 | None:intergenic | 60.0% | |
| ! | TCTTCCCACCGTTTGGCTCC+GGG | - | chr1_3:68782081-68782100 | Msa0136690:intron | 60.0% |
| ACCGGGACACCCCTAATCTG+AGG | + | chr1_3:68782591-68782610 | None:intergenic | 60.0% | |
| TCGACCGACGGTGGTAGCAG+AGG | + | chr1_3:68780181-68780200 | None:intergenic | 65.0% | |
| TGCTGCTCATCGACCGACGG+TGG | + | chr1_3:68780190-68780209 | None:intergenic | 65.0% | |
| AGGTCCCGGAGCCAAACGGT+GGG | + | chr1_3:68782088-68782107 | None:intergenic | 65.0% | |
| AAGGTCCCGGAGCCAAACGG+TGG | + | chr1_3:68782089-68782108 | None:intergenic | 65.0% | |
| GCGAAGGTCCCGGAGCCAAA+CGG | + | chr1_3:68782092-68782111 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 68778677 | 68784634 | 68778677 | ID=Msa0136690;Name=Msa0136690 |
| chr1_3 | mRNA | 68778677 | 68784634 | 68778677 | ID=Msa0136690-mRNA-1;Parent=Msa0136690;Name=Msa0136690-mRNA-1;_AED=0.10;_eAED=0.11;_QI=168|0.81|0.83|1|0.72|0.83|12|366|505 |
| chr1_3 | exon | 68778677 | 68779141 | 68778677 | ID=Msa0136690-mRNA-1:exon:23751;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68779519 | 68779581 | 68779519 | ID=Msa0136690-mRNA-1:exon:23750;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68779678 | 68779721 | 68779678 | ID=Msa0136690-mRNA-1:exon:23749;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68779899 | 68780050 | 68779899 | ID=Msa0136690-mRNA-1:exon:23748;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68780249 | 68780281 | 68780249 | ID=Msa0136690-mRNA-1:exon:23747;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68780828 | 68781050 | 68780828 | ID=Msa0136690-mRNA-1:exon:23746;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68781181 | 68781361 | 68781181 | ID=Msa0136690-mRNA-1:exon:23745;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68781570 | 68781593 | 68781570 | ID=Msa0136690-mRNA-1:exon:23744;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68781695 | 68781909 | 68781695 | ID=Msa0136690-mRNA-1:exon:23743;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68782971 | 68783278 | 68782971 | ID=Msa0136690-mRNA-1:exon:23742;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68784174 | 68784360 | 68784174 | ID=Msa0136690-mRNA-1:exon:23741;Parent=Msa0136690-mRNA-1 |
| chr1_3 | exon | 68784478 | 68784634 | 68784478 | ID=Msa0136690-mRNA-1:exon:23740;Parent=Msa0136690-mRNA-1 |
| chr1_3 | five_prime_UTR | 68784478 | 68784634 | 68784478 | ID=Msa0136690-mRNA-1:five_prime_utr;Parent=Msa0136690-mRNA-1 |
| chr1_3 | five_prime_UTR | 68784350 | 68784360 | 68784350 | ID=Msa0136690-mRNA-1:five_prime_utr;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68784174 | 68784349 | 68784174 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68782971 | 68783278 | 68782971 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68781695 | 68781909 | 68781695 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68781570 | 68781593 | 68781570 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68781181 | 68781361 | 68781181 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68780828 | 68781050 | 68780828 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68780249 | 68780281 | 68780249 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68779899 | 68780050 | 68779899 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68779678 | 68779721 | 68779678 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68779519 | 68779581 | 68779519 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | CDS | 68779043 | 68779141 | 68779043 | ID=Msa0136690-mRNA-1:cds;Parent=Msa0136690-mRNA-1 |
| chr1_3 | three_prime_UTR | 68778677 | 68779042 | 68778677 | ID=Msa0136690-mRNA-1:three_prime_utr;Parent=Msa0136690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
