AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648300 MtrunA17_Chr4g0040221 97.881 472 8 2 1 472 1 470 0.0 939
Msa0648300 MtrunA17_Chr4g0040231 80.000 475 92 1 1 472 1 475 0.0 761
Msa0648300 MtrunA17_Chr4g0040001 80.728 467 87 1 1 464 1 467 0.0 752
Msa0648300 MtrunA17_Chr4g0040011 79.730 444 81 2 1 441 9 446 0.0 693
Msa0648300 MtrunA17_Chr4g0040261 70.149 469 130 5 1 465 34 496 0.0 652
Msa0648300 MtrunA17_Chr4g0040251 64.468 470 156 6 1 465 1 464 0.0 613
Msa0648300 MtrunA17_Chr4g0040271 68.957 422 120 6 1 418 1 415 0.0 586
Msa0648300 MtrunA17_Chr7g0217051 56.681 464 193 4 6 465 7 466 0.0 557
Msa0648300 MtrunA17_Chr7g0248011 48.847 477 230 6 2 472 3 471 9.87e-161 463
Msa0648300 MtrunA17_Chr6g0457271 52.732 366 167 3 67 428 5 368 1.73e-142 413
Msa0648300 MtrunA17_Chr6g0457281 52.740 292 127 4 88 372 2 289 4.31e-105 315
Msa0648300 MtrunA17_Chr1g0147071 29.148 446 286 9 10 435 10 445 3.85e-58 199
Msa0648300 MtrunA17_Chr5g0393471 29.352 293 195 8 170 455 43 330 1.28e-27 112
Msa0648300 MtrunA17_Chr6g0457291 54.930 71 32 0 396 466 1 71 2.88e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648300 AT3G49190.1 30.088 452 289 7 6 435 14 460 4.33e-64 216
Msa0648300 AT5G53390.1 31.409 433 275 9 10 427 15 440 8.28e-60 204
Msa0648300 AT3G49210.1 28.221 489 314 9 10 464 26 511 3.07e-55 192
Msa0648300 AT3G49200.1 27.974 454 292 9 10 435 26 472 6.63e-54 189
Msa0648300 AT1G72110.1 29.797 443 287 9 7 435 9 441 2.99e-53 186
Msa0648300 AT5G12420.1 27.851 456 293 11 4 435 3 446 1.64e-51 181
Msa0648300 AT2G38995.2 28.112 466 317 7 10 464 21 479 2.10e-50 179
Msa0648300 AT5G22490.1 28.333 480 301 13 11 464 12 474 9.38e-50 177
Msa0648300 AT5G12420.2 28.037 428 272 11 4 407 3 418 1.00e-49 176
Msa0648300 AT1G72110.2 28.894 443 282 10 7 435 9 432 1.99e-49 176
Msa0648300 AT5G16350.3 28.281 442 290 13 5 435 3 428 2.45e-49 176
Msa0648300 AT5G37300.1 29.048 420 275 8 56 461 60 470 1.65e-48 174
Msa0648300 AT5G37300.4 29.017 417 273 8 56 458 78 485 2.55e-48 173
Msa0648300 AT5G16350.1 28.105 459 289 15 5 435 3 448 3.11e-47 170
Msa0648300 AT2G38995.3 28.293 410 277 6 66 464 7 410 3.97e-45 163
Msa0648300 AT5G53380.1 26.722 479 311 12 6 458 4 468 3.09e-44 162
Msa0648300 AT2G38995.4 28.495 372 249 5 66 428 7 370 8.99e-43 156
Msa0648300 AT3G49210.2 28.609 381 236 8 10 357 26 403 1.34e-41 154
Msa0648300 AT5G16350.2 28.715 397 242 15 5 373 3 386 3.67e-39 146
Msa0648300 AT5G22490.2 29.144 374 222 13 11 358 12 368 5.47e-38 143
Msa0648300 AT5G37300.2 29.091 330 214 6 56 373 78 399 1.14e-37 142
Msa0648300 AT5G37300.3 31.696 224 141 5 56 275 78 293 6.49e-27 111
Msa0648300 AT2G38995.1 27.397 219 147 4 257 464 72 289 1.02e-16 81.3
Msa0648300 AT2G43255.2 26.961 204 140 4 269 464 8 210 4.16e-15 74.7
Msa0648300 AT2G43255.1 27.094 203 140 4 269 464 8 209 9.91e-15 73.6

Find 98 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAATAAAATCCATTTAT+TGG 0.159390 4_3:+54796619 None:intergenic
TTTAGCTCCATATCAGATTT+TGG 0.176719 4_3:-54797899 Msa0648300:CDS
CCTTCATATCCTGACCTTAT+AGG 0.183309 4_3:+54797833 None:intergenic
TTGGCAAATCATCCAATAAA+TGG 0.194262 4_3:-54796631 Msa0648300:CDS
AATTTAGAGATGAAATTAAA+AGG 0.219948 4_3:-54796957 Msa0648300:CDS
GATGATGAGTTTGTGGTTTC+AGG 0.231862 4_3:+54798235 None:intergenic
TTGATTTCCCCAAAGACTTT+TGG 0.251445 4_3:+54797109 None:intergenic
CTTAGTGGGGTGATCTTCTA+TGG 0.253842 4_3:-54797257 Msa0648300:CDS
CAGACCCTCTTGAGTTTGTT+TGG 0.260303 4_3:-54797046 Msa0648300:CDS
GAGGAGAAACGTGGATTGAT+AGG 0.276195 4_3:+54798488 None:intergenic
TCCACGTTTCTCCTCTATTA+TGG 0.279430 4_3:-54798480 Msa0648300:intron
AACCAGAGTCCAAAAGTCTT+TGG 0.299068 4_3:-54797118 Msa0648300:CDS
GATATGTTTGACAAAGTAAA+AGG 0.308704 4_3:+54797797 None:intergenic
TTTGCATTTCTTTCAATGAT+TGG 0.328080 4_3:+54797141 None:intergenic
TTTGTGGTTTCAGGAAATTT+AGG 0.332994 4_3:+54798244 None:intergenic
ACCAGAGTCCAAAAGTCTTT+GGG 0.339545 4_3:-54797117 Msa0648300:CDS
GCTTGATCCAAAATCTGATA+TGG 0.353400 4_3:+54797892 None:intergenic
GGTAGGACCAGTGGAGAAAA+TGG 0.365312 4_3:-54796656 Msa0648300:CDS
TCTTTCAGTGTTTATCTCAT+AGG 0.378679 4_3:-54796990 Msa0648300:CDS
GTTCCTTCAGCATTGCTTGT+TGG 0.387997 4_3:+54798109 None:intergenic
CAAACTCAAGAGGGTCTGAT+TGG 0.400736 4_3:+54797051 None:intergenic
ACCTCAAGATAAACCCCTTT+GGG 0.402020 4_3:-54798152 Msa0648300:CDS
CACACCACACCACAGCATAA+TGG 0.410159 4_3:-54798663 Msa0648300:exon
TTCAATTGATGATGAGTTTG+TGG 0.421310 4_3:+54798228 None:intergenic
ATTTAGAGATGAAATTAAAA+GGG 0.434063 4_3:-54796956 Msa0648300:CDS
ATAGTTTGTGAGTCATCAAT+TGG 0.440939 4_3:+54798536 None:intergenic
AAGATGACAAAACACCTATA+AGG 0.442261 4_3:-54797847 Msa0648300:CDS
AATCAAATGTATTTCCCAAA+GGG 0.445055 4_3:+54798138 None:intergenic
TGGTGATGGTTACTCTCTCA+TGG 0.446072 4_3:-54798059 Msa0648300:CDS
GGAAAAGATAAAGGAAGAGA+AGG 0.447318 4_3:+54798001 None:intergenic
ACCAGTGGAGAAAATGGCTT+TGG 0.450782 4_3:-54796650 Msa0648300:CDS
GATTGGCTTAACTTAGGTAT+AGG 0.451225 4_3:+54797068 None:intergenic
CACCTCAAGATAAACCCCTT+TGG 0.455067 4_3:-54798153 Msa0648300:CDS
TAGCTTAAATGTCTCGCGGC+TGG 0.473660 4_3:-54796057 Msa0648300:three_prime_UTR
AAAATAATCTATAACACAAT+GGG 0.475550 4_3:-54796706 Msa0648300:CDS
GAGATGTAAAACCATAATAG+AGG 0.481749 4_3:+54798469 None:intergenic
AGGAGAAACGTGGATTGATA+GGG 0.481798 4_3:+54798489 None:intergenic
CTATAAACGATGTGCTTAGT+GGG 0.482677 4_3:-54797271 Msa0648300:CDS
GGGTCTGATTGGCTTAACTT+AGG 0.483227 4_3:+54797062 None:intergenic
CAAAGCAGCTATGGAGATCT+CGG 0.484745 4_3:-54796237 Msa0648300:CDS
AAGCTCGTAAGTTGATCAAA+AGG 0.488960 4_3:-54797022 Msa0648300:CDS
ACTATAAACGATGTGCTTAG+TGG 0.492582 4_3:-54797272 Msa0648300:CDS
GGGTGATCTTCTATGGGATT+AGG 0.493169 4_3:-54797250 Msa0648300:CDS
AATCACATTGAGAACATTGA+AGG 0.494025 4_3:-54796318 Msa0648300:CDS
TCCCAAAGGGGTTTATCTTG+AGG 0.499840 4_3:+54798151 None:intergenic
TTCAAACTTCACCATGCACT+TGG 0.505787 4_3:-54798079 Msa0648300:CDS
CTCAACACAAGAAATATTGA+AGG 0.507495 4_3:-54797167 Msa0648300:CDS
ATGAAAATCTGATTAAGATC+CGG 0.509004 4_3:+54796080 None:intergenic
AAAGAGATCAAATCAAAGCT+TGG 0.509039 4_3:-54797755 Msa0648300:CDS
CCTATAAGGTCAGGATATGA+AGG 0.510705 4_3:-54797833 Msa0648300:CDS
TTAGTGGGGTGATCTTCTAT+GGG 0.511263 4_3:-54797256 Msa0648300:CDS
CTATGGGATTAGGCTATACA+TGG 0.512779 4_3:-54797240 Msa0648300:CDS
AAGTGTTGTTATCTCTAACT+TGG 0.521473 4_3:-54796677 Msa0648300:CDS
AGAAACGTGGATTGATAGGG+AGG 0.521664 4_3:+54798492 None:intergenic
GAAAAGATAAAGGAAGAGAA+GGG 0.522817 4_3:+54798002 None:intergenic
AAGAAAATATATATAAATGA+AGG 0.522872 4_3:-54796115 Msa0648300:three_prime_UTR
GACAAAACACCTATAAGGTC+AGG 0.527058 4_3:-54797842 Msa0648300:CDS
ATATAAATAAATATAAATGA+AGG 0.533302 4_3:-54796153 Msa0648300:three_prime_UTR
TATTGTCCATGAGGACTCAC+TGG 0.534626 4_3:+54798614 None:intergenic
CTTCACCATGCACTTGGTGA+TGG 0.544042 4_3:-54798073 Msa0648300:CDS
TAATCAAATGTATTTCCCAA+AGG 0.546228 4_3:+54798137 None:intergenic
TGCTGTGGTGTGGTGTGGTG+TGG 0.546276 4_3:+54798669 None:intergenic
ATCACATTGAGAACATTGAA+GGG 0.548950 4_3:-54796317 Msa0648300:CDS
GTTGTTATCTCTAACTTGGT+AGG 0.550431 4_3:-54796673 Msa0648300:CDS
CATGAGCCAGTGAGTCCTCA+TGG 0.553430 4_3:-54798620 Msa0648300:CDS
TAAAATAATCTATAACACAA+TGG 0.553998 4_3:-54796707 Msa0648300:CDS
CTCTAACTTGGTAGGACCAG+TGG 0.554437 4_3:-54796665 Msa0648300:CDS
GGTGATGGTTACTCTCTCAT+GGG 0.557425 4_3:-54798058 Msa0648300:CDS
TACCTCAGGTCCACCTGTCA+TGG 0.569963 4_3:+54796597 None:intergenic
CGGTAAAATGAGATGGCAAA+GGG 0.575423 4_3:-54798299 Msa0648300:CDS
AGTCATATTCAAAGCAGCTA+TGG 0.581603 4_3:-54796246 Msa0648300:CDS
GATGAAATTAAAAGGGTCTG+AGG 0.583143 4_3:-54796949 Msa0648300:intron
ATGAAGGTATGACTATCTAC+CGG 0.594936 4_3:-54796099 Msa0648300:three_prime_UTR
ACGGTAAAATGAGATGGCAA+AGG 0.601019 4_3:-54798300 Msa0648300:CDS
ATCAAATGTATTTCCCAAAG+GGG 0.601712 4_3:+54798139 None:intergenic
ACAAAGACGGTAAAATGAGA+TGG 0.603880 4_3:-54798306 Msa0648300:CDS
AGGAAGACATCTTTGAGCAA+AGG 0.606376 4_3:+54798512 None:intergenic
ACGGAAATTCAAATTCTGCA+TGG 0.606858 4_3:-54796282 Msa0648300:CDS
GCTTTCCAAACAAACTCAAG+AGG 0.607433 4_3:+54797041 None:intergenic
CATTATGCTGTGGTGTGGTG+TGG 0.610030 4_3:+54798664 None:intergenic
AGTAACCATCACCAAGTGCA+TGG 0.610345 4_3:+54798068 None:intergenic
TGAAGGGGTTCATTGATGAA+CGG 0.610996 4_3:-54796301 Msa0648300:CDS
TTGTCCATTATGCTGTGGTG+TGG 0.611711 4_3:+54798659 None:intergenic
CTTTCCAAACAAACTCAAGA+GGG 0.611868 4_3:+54797042 None:intergenic
TGAATTTGTCCATTATGCTG+TGG 0.616031 4_3:+54798654 None:intergenic
TATCCAACAAGCAATGCTGA+AGG 0.616041 4_3:-54798112 Msa0648300:CDS
CCAGAGTCCAAAAGTCTTTG+GGG 0.617094 4_3:-54797116 Msa0648300:CDS
CACCATGACAGGTGGACCTG+AGG 0.619701 4_3:-54796599 Msa0648300:intron
GTTGAGCATTACTACAGCGG+TGG 0.633293 4_3:+54797184 None:intergenic
TCATTAGCTTAAATGTCTCG+CGG 0.637909 4_3:-54796061 Msa0648300:three_prime_UTR
TGTGTTGAGCATTACTACAG+CGG 0.646356 4_3:+54797181 None:intergenic
TCACATTGAGAACATTGAAG+GGG 0.651697 4_3:-54796316 Msa0648300:CDS
GATCAAATCAAAGCTTGGAG+TGG 0.652842 4_3:-54797750 Msa0648300:intron
CTGTTGAAATATTGTCCATG+AGG 0.678022 4_3:+54798605 None:intergenic
TATAAACGATGTGCTTAGTG+GGG 0.697110 4_3:-54797270 Msa0648300:CDS
ACCATAATAGAGGAGAAACG+TGG 0.711895 4_3:+54798479 None:intergenic
TGGGATTAGGCTATACATGG+AGG 0.722762 4_3:-54797237 Msa0648300:CDS
CAACAGGTAAGAGACAAAGA+CGG 0.726123 4_3:-54798319 Msa0648300:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAGATTTTTTTTTTTGA+AGG + chr4_3:54797135-54797154 None:intergenic 10.0%
!!! CTTAATCTAATAATTTTATA+AGG + chr4_3:54797408-54797427 None:intergenic 10.0%
!!! AATAATTATTTTTCTTAGTT+TGG - chr4_3:54797935-54797954 Msa0648300:CDS 10.0%
!! AAGAAAATATATATAAATGA+AGG - chr4_3:54798622-54798641 Msa0648300:CDS 10.0%
!! ATATACCATTAATTACAATT+TGG + chr4_3:54796341-54796360 None:intergenic 15.0%
!! TACTACTATTATTTAATTGA+GGG - chr4_3:54796382-54796401 Msa0648300:intron 15.0%
!!! TTTTGCTAATTTTATAATCT+AGG + chr4_3:54797041-54797060 None:intergenic 15.0%
!! GATTCAAAAATAGAAATAAA+TGG + chr4_3:54797386-54797405 None:intergenic 15.0%
!! AATTTAGAGATGAAATTAAA+AGG - chr4_3:54797780-54797799 Msa0648300:CDS 15.0%
!! ATTTAGAGATGAAATTAAAA+GGG - chr4_3:54797781-54797800 Msa0648300:CDS 15.0%
!! TAAAATAATCTATAACACAA+TGG - chr4_3:54798030-54798049 Msa0648300:CDS 15.0%
!! AAAATAATCTATAACACAAT+GGG - chr4_3:54798031-54798050 Msa0648300:CDS 15.0%
!! ATACCTGTAAAAAATTAATT+AGG - chr4_3:54798525-54798544 Msa0648300:CDS 15.0%
!! AGATACCAAATTGTAATTAA+TGG - chr4_3:54796333-54796352 Msa0648300:CDS 20.0%
!! CTACTACTATTATTTAATTG+AGG - chr4_3:54796381-54796400 Msa0648300:intron 20.0%
!! TAATAGACAAAGTTTGATTA+TGG + chr4_3:54797320-54797339 None:intergenic 20.0%
!!! AATTATTTTTCTTAGTTTGG+AGG - chr4_3:54797938-54797957 Msa0648300:CDS 20.0%
!! ATGTTATCTCTAATTTAGTT+TGG - chr4_3:54797987-54798006 Msa0648300:CDS 20.0%
!! GTGAAATAAAATCCATTTAT+TGG + chr4_3:54798121-54798140 None:intergenic 20.0%
!!! TGTCCTAATTAATTTTTTAC+AGG + chr4_3:54798531-54798550 None:intergenic 20.0%
!! GTGATATGTTCATATGTTTT+TGG - chr4_3:54796159-54796178 Msa0648300:three_prime_UTR 25.0%
!! TCTAAAATGTAAAGTACTAG+TGG + chr4_3:54796316-54796335 None:intergenic 25.0%
! AATCAAATGTATTTCCCAAA+GGG + chr4_3:54796602-54796621 None:intergenic 25.0%
! TAATCAAATGTATTTCCCAA+AGG + chr4_3:54796603-54796622 None:intergenic 25.0%
!!! CTTTTTGAAGGAAAAGATAA+AGG + chr4_3:54796748-54796767 None:intergenic 25.0%
!!! GCATATTTTGAATCTAATTG+TGG + chr4_3:54796772-54796791 None:intergenic 25.0%
! GATATGTTTGACAAAGTAAA+AGG + chr4_3:54796943-54796962 None:intergenic 25.0%
!! TTTTGCCATGCATATATAAA+TGG - chr4_3:54797437-54797456 Msa0648300:intron 25.0%
! TTTGCATTTCTTTCAATGAT+TGG + chr4_3:54797599-54797618 None:intergenic 25.0%
!! AATATCAAATTTTCGATGAG+TGG + chr4_3:54797833-54797852 None:intergenic 25.0%
!!! TATCTCTAATTTAGTTTGGT+TGG - chr4_3:54797991-54798010 Msa0648300:CDS 25.0%
! GATTGAAATATATATACCTC+AGG + chr4_3:54798157-54798176 None:intergenic 25.0%
! ATGAAAATCTGATTAAGATC+CGG + chr4_3:54798660-54798679 None:intergenic 25.0%
!!! TTCATATGTTTTTGGCTTTC+TGG - chr4_3:54796167-54796186 Msa0648300:three_prime_UTR 30.0%
! ATAGTTTGTGAGTCATCAAT+TGG + chr4_3:54796204-54796223 None:intergenic 30.0%
GAGATGTAAAACCATAATAG+AGG + chr4_3:54796271-54796290 None:intergenic 30.0%
TTTGTGGTTTCAGGAAATTT+AGG + chr4_3:54796496-54796515 None:intergenic 30.0%
!! TTCAATTGATGATGAGTTTG+TGG + chr4_3:54796512-54796531 None:intergenic 30.0%
ATCAAATGTATTTCCCAAAG+GGG + chr4_3:54796601-54796620 None:intergenic 30.0%
GAAAAGATAAAGGAAGAGAA+GGG + chr4_3:54796738-54796757 None:intergenic 30.0%
! TCTAATTGTGGTCTTTTTGA+AGG + chr4_3:54796760-54796779 None:intergenic 30.0%
ATCTGATATGGAGCTAAAAA+AGG + chr4_3:54796836-54796855 None:intergenic 30.0%
!! TTTAGCTCCATATCAGATTT+TGG - chr4_3:54796838-54796857 Msa0648300:intron 30.0%
AAGATGACAAAACACCTATA+AGG - chr4_3:54796890-54796909 Msa0648300:intron 30.0%
AAAGAGATCAAATCAAAGCT+TGG - chr4_3:54796982-54797001 Msa0648300:CDS 30.0%
!!! GTGGTAAGATTTTAGCTATA+TGG - chr4_3:54797006-54797025 Msa0648300:CDS 30.0%
AGACAAAGTTTGATTATGGT+CGG + chr4_3:54797316-54797335 None:intergenic 30.0%
CTCAACACAAGAAATATTGA+AGG - chr4_3:54797570-54797589 Msa0648300:intron 30.0%
TCTTTCAGTGTTTATCTCAT+AGG - chr4_3:54797747-54797766 Msa0648300:intron 30.0%
!! TGCTCTAATTTTGATAGCTA+AGG - chr4_3:54797870-54797889 Msa0648300:CDS 30.0%
! TTTGGAGGTTCTTTAATTTC+AGG - chr4_3:54797953-54797972 Msa0648300:CDS 30.0%
! AAGTGTTGTTATCTCTAACT+TGG - chr4_3:54798060-54798079 Msa0648300:CDS 30.0%
TTGGCAAATCATCCAATAAA+TGG - chr4_3:54798106-54798125 Msa0648300:CDS 30.0%
AATCACATTGAGAACATTGA+AGG - chr4_3:54798419-54798438 Msa0648300:intron 30.0%
ATCACATTGAGAACATTGAA+GGG - chr4_3:54798420-54798439 Msa0648300:intron 30.0%
TGAATTTGTCCATTATGCTG+TGG + chr4_3:54796086-54796105 None:intergenic 35.0%
CTGTTGAAATATTGTCCATG+AGG + chr4_3:54796135-54796154 None:intergenic 35.0%
!! GGGCTTAATTAATTTGCAAC+AGG - chr4_3:54796402-54796421 Msa0648300:intron 35.0%
ACAAAGACGGTAAAATGAGA+TGG - chr4_3:54796431-54796450 Msa0648300:intron 35.0%
GGAAAAGATAAAGGAAGAGA+AGG + chr4_3:54796739-54796758 None:intergenic 35.0%
GCTTGATCCAAAATCTGATA+TGG + chr4_3:54796848-54796867 None:intergenic 35.0%
CTGCACCATTTATATATGCA+TGG + chr4_3:54797445-54797464 None:intergenic 35.0%
ACTATAAACGATGTGCTTAG+TGG - chr4_3:54797465-54797484 Msa0648300:intron 35.0%
CTATAAACGATGTGCTTAGT+GGG - chr4_3:54797466-54797485 Msa0648300:intron 35.0%
TATAAACGATGTGCTTAGTG+GGG - chr4_3:54797467-54797486 Msa0648300:intron 35.0%
! TTGATTTCCCCAAAGACTTT+TGG + chr4_3:54797631-54797650 None:intergenic 35.0%
!! GATTGGCTTAACTTAGGTAT+AGG + chr4_3:54797672-54797691 None:intergenic 35.0%
CTTTCCAAACAAACTCAAGA+GGG + chr4_3:54797698-54797717 None:intergenic 35.0%
!! AAGCTCGTAAGTTGATCAAA+AGG - chr4_3:54797715-54797734 Msa0648300:intron 35.0%
GATGAAATTAAAAGGGTCTG+AGG - chr4_3:54797788-54797807 Msa0648300:CDS 35.0%
!! TTTAGTTTGGTTGGTGTTTC+AGG - chr4_3:54798000-54798019 Msa0648300:CDS 35.0%
GTTGTTATCTCTAACTTGGT+AGG - chr4_3:54798064-54798083 Msa0648300:CDS 35.0%
!! GGATTTTATTTCACCATGAC+AGG - chr4_3:54798127-54798146 Msa0648300:CDS 35.0%
!! TTTTATTTCACCATGACAGG+TGG - chr4_3:54798130-54798149 Msa0648300:CDS 35.0%
! GCTGTGACTTGAGATTTTAT+TGG - chr4_3:54798265-54798284 Msa0648300:CDS 35.0%
!! AACACCGTATCTTTTGTTTG+TGG - chr4_3:54798349-54798368 Msa0648300:intron 35.0%
GCAACCACAAACAAAAGATA+CGG + chr4_3:54798356-54798375 None:intergenic 35.0%
TCACATTGAGAACATTGAAG+GGG - chr4_3:54798421-54798440 Msa0648300:intron 35.0%
ACGGAAATTCAAATTCTGCA+TGG - chr4_3:54798455-54798474 Msa0648300:intron 35.0%
AGTCATATTCAAAGCAGCTA+TGG - chr4_3:54798491-54798510 Msa0648300:CDS 35.0%
! ATGAAGGTATGACTATCTAC+CGG - chr4_3:54798638-54798657 Msa0648300:CDS 35.0%
! TCATTAGCTTAAATGTCTCG+CGG - chr4_3:54798676-54798695 Msa0648300:five_prime_UTR 35.0%
AGGAAGACATCTTTGAGCAA+AGG + chr4_3:54796228-54796247 None:intergenic 40.0%
! AGGAGAAACGTGGATTGATA+GGG + chr4_3:54796251-54796270 None:intergenic 40.0%
TCCACGTTTCTCCTCTATTA+TGG - chr4_3:54796257-54796276 Msa0648300:CDS 40.0%
ACCATAATAGAGGAGAAACG+TGG + chr4_3:54796261-54796280 None:intergenic 40.0%
CAACAGGTAAGAGACAAAGA+CGG - chr4_3:54796418-54796437 Msa0648300:intron 40.0%
ACGGTAAAATGAGATGGCAA+AGG - chr4_3:54796437-54796456 Msa0648300:intron 40.0%
CGGTAAAATGAGATGGCAAA+GGG - chr4_3:54796438-54796457 Msa0648300:intron 40.0%
GATGATGAGTTTGTGGTTTC+AGG + chr4_3:54796505-54796524 None:intergenic 40.0%
ACCTCAAGATAAACCCCTTT+GGG - chr4_3:54796585-54796604 Msa0648300:intron 40.0%
TATCCAACAAGCAATGCTGA+AGG - chr4_3:54796625-54796644 Msa0648300:CDS 40.0%
TTCAAACTTCACCATGCACT+TGG - chr4_3:54796658-54796677 Msa0648300:CDS 40.0%
GACAAAACACCTATAAGGTC+AGG - chr4_3:54796895-54796914 Msa0648300:intron 40.0%
CCTTCATATCCTGACCTTAT+AGG + chr4_3:54796907-54796926 None:intergenic 40.0%
CCTATAAGGTCAGGATATGA+AGG - chr4_3:54796904-54796923 Msa0648300:intron 40.0%
GATCAAATCAAAGCTTGGAG+TGG - chr4_3:54796987-54797006 Msa0648300:CDS 40.0%
ATCAACCACAACAAGATGGA+CGG + chr4_3:54797182-54797201 None:intergenic 40.0%
TGTGATCAACCACAACAAGA+TGG + chr4_3:54797186-54797205 None:intergenic 40.0%
! TCTTGTTGTGGTTGATCACA+TGG - chr4_3:54797186-54797205 Msa0648300:CDS 40.0%
TTAGTGGGGTGATCTTCTAT+GGG - chr4_3:54797481-54797500 Msa0648300:intron 40.0%
CTATGGGATTAGGCTATACA+TGG - chr4_3:54797497-54797516 Msa0648300:intron 40.0%
TGTGTTGAGCATTACTACAG+CGG + chr4_3:54797559-54797578 None:intergenic 40.0%
AACCAGAGTCCAAAAGTCTT+TGG - chr4_3:54797619-54797638 Msa0648300:intron 40.0%
ACCAGAGTCCAAAAGTCTTT+GGG - chr4_3:54797620-54797639 Msa0648300:intron 40.0%
GCTTTCCAAACAAACTCAAG+AGG + chr4_3:54797699-54797718 None:intergenic 40.0%
CTCAAGTCACAGCAAAACAT+GGG + chr4_3:54798258-54798277 None:intergenic 40.0%
TCTCAAGTCACAGCAAAACA+TGG + chr4_3:54798259-54798278 None:intergenic 40.0%
TGAAGGGGTTCATTGATGAA+CGG - chr4_3:54798436-54798455 Msa0648300:intron 40.0%
TTGTCCATTATGCTGTGGTG+TGG + chr4_3:54796081-54796100 None:intergenic 45.0%
TATTGTCCATGAGGACTCAC+TGG + chr4_3:54796126-54796145 None:intergenic 45.0%
! AGAAACGTGGATTGATAGGG+AGG + chr4_3:54796248-54796267 None:intergenic 45.0%
! GAGGAGAAACGTGGATTGAT+AGG + chr4_3:54796252-54796271 None:intergenic 45.0%
CACCTCAAGATAAACCCCTT+TGG - chr4_3:54796584-54796603 Msa0648300:intron 45.0%
TCCCAAAGGGGTTTATCTTG+AGG + chr4_3:54796589-54796608 None:intergenic 45.0%
GTTCCTTCAGCATTGCTTGT+TGG + chr4_3:54796631-54796650 None:intergenic 45.0%
AGTAACCATCACCAAGTGCA+TGG + chr4_3:54796672-54796691 None:intergenic 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG - chr4_3:54796678-54796697 Msa0648300:CDS 45.0%
! GGTGATGGTTACTCTCTCAT+GGG - chr4_3:54796679-54796698 Msa0648300:CDS 45.0%
TTAGACCGTCCATCTTGTTG+TGG - chr4_3:54797174-54797193 Msa0648300:CDS 45.0%
CTTAGTGGGGTGATCTTCTA+TGG - chr4_3:54797480-54797499 Msa0648300:intron 45.0%
GGGTGATCTTCTATGGGATT+AGG - chr4_3:54797487-54797506 Msa0648300:intron 45.0%
TGGGATTAGGCTATACATGG+AGG - chr4_3:54797500-54797519 Msa0648300:intron 45.0%
CCAGAGTCCAAAAGTCTTTG+GGG - chr4_3:54797621-54797640 Msa0648300:intron 45.0%
!! GGGTCTGATTGGCTTAACTT+AGG + chr4_3:54797678-54797697 None:intergenic 45.0%
CAAACTCAAGAGGGTCTGAT+TGG + chr4_3:54797689-54797708 None:intergenic 45.0%
! CAGACCCTCTTGAGTTTGTT+TGG - chr4_3:54797691-54797710 Msa0648300:intron 45.0%
ACCAGTGGAGAAAATGGCTT+TGG - chr4_3:54798087-54798106 Msa0648300:CDS 45.0%
CAAAGCAGCTATGGAGATCT+CGG - chr4_3:54798500-54798519 Msa0648300:CDS 45.0%
!! ATATAAATAAATATAAATGA+AGG - chr4_3:54798584-54798603 Msa0648300:CDS 5.0%
CATTATGCTGTGGTGTGGTG+TGG + chr4_3:54796076-54796095 None:intergenic 50.0%
CACACCACACCACAGCATAA+TGG - chr4_3:54796074-54796093 Msa0648300:three_prime_UTR 50.0%
! CTTCACCATGCACTTGGTGA+TGG - chr4_3:54796664-54796683 Msa0648300:CDS 50.0%
GTTGAGCATTACTACAGCGG+TGG + chr4_3:54797556-54797575 None:intergenic 50.0%
! CCCCAAAGACTTTTGGACTC+TGG + chr4_3:54797624-54797643 None:intergenic 50.0%
CTCTAACTTGGTAGGACCAG+TGG - chr4_3:54798072-54798091 Msa0648300:CDS 50.0%
GGTAGGACCAGTGGAGAAAA+TGG - chr4_3:54798081-54798100 Msa0648300:CDS 50.0%
!! GCCAAAGCCATTTTCTCCAC+TGG + chr4_3:54798091-54798110 None:intergenic 50.0%
TAGCTTAAATGTCTCGCGGC+TGG - chr4_3:54798680-54798699 Msa0648300:five_prime_UTR 50.0%
CATGAGCCAGTGAGTCCTCA+TGG - chr4_3:54796117-54796136 Msa0648300:three_prime_UTR 55.0%
TACCTCAGGTCCACCTGTCA+TGG + chr4_3:54798143-54798162 None:intergenic 55.0%
TGCTGTGGTGTGGTGTGGTG+TGG + chr4_3:54796071-54796090 None:intergenic 60.0%
CACCATGACAGGTGGACCTG+AGG - chr4_3:54798138-54798157 Msa0648300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54796030 54798729 54796030 ID=Msa0648300;Name=Msa0648300
chr4_3 mRNA 54796030 54798729 54796030 ID=Msa0648300-mRNA-1;Parent=Msa0648300;Name=Msa0648300-mRNA-1;_AED=0.08;_eAED=0.08;_QI=63|1|1|1|1|1|5|187|472
chr4_3 exon 54796030 54796381 54796030 ID=Msa0648300-mRNA-1:exon:13930;Parent=Msa0648300-mRNA-1
chr4_3 exon 54796600 54796737 54796600 ID=Msa0648300-mRNA-1:exon:13929;Parent=Msa0648300-mRNA-1
chr4_3 exon 54796950 54797294 54796950 ID=Msa0648300-mRNA-1:exon:13928;Parent=Msa0648300-mRNA-1
chr4_3 exon 54797751 54798335 54797751 ID=Msa0648300-mRNA-1:exon:13927;Parent=Msa0648300-mRNA-1
chr4_3 exon 54798481 54798729 54798481 ID=Msa0648300-mRNA-1:exon:13926;Parent=Msa0648300-mRNA-1
chr4_3 five_prime_UTR 54798667 54798729 54798667 ID=Msa0648300-mRNA-1:five_prime_utr;Parent=Msa0648300-mRNA-1
chr4_3 CDS 54798481 54798666 54798481 ID=Msa0648300-mRNA-1:cds;Parent=Msa0648300-mRNA-1
chr4_3 CDS 54797751 54798335 54797751 ID=Msa0648300-mRNA-1:cds;Parent=Msa0648300-mRNA-1
chr4_3 CDS 54796950 54797294 54796950 ID=Msa0648300-mRNA-1:cds;Parent=Msa0648300-mRNA-1
chr4_3 CDS 54796600 54796737 54796600 ID=Msa0648300-mRNA-1:cds;Parent=Msa0648300-mRNA-1
chr4_3 CDS 54796217 54796381 54796217 ID=Msa0648300-mRNA-1:cds;Parent=Msa0648300-mRNA-1
chr4_3 three_prime_UTR 54796030 54796216 54796030 ID=Msa0648300-mRNA-1:three_prime_utr;Parent=Msa0648300-mRNA-1
Gene Sequence

>Msa0648300

ATGGACAAATTCAATGAAGAAGTTCATGAGCCAGTGAGTCCTCATGGACAATATTTCAACAGCTCTGTGATATGTTCATATGTTTTTGGCTTTCTGGAATTAGCTATTCCAATTGATGACTCACAAACTATGCCTTTGCTCAAAGATGTCTTCCTCCCTATCAATCCACGTTTCTCCTCTATTATGGTAAGAGACAAAGACGGTAAAATGAGATGGCAAAGGGTTGAAGTGAAGCTTGAAGAGCACGTAAAGATTCCTAAATTTCCTGAAACCACAAACTCATCATCAATTGAATTATATGACAATTATCTTAGTGACTATGTAACAAATATTCTAACTTCAAGAACACCTCAAGATAAACCCCTTTGGGAAATACATTTGATTAAATATCCAACAAGCAATGCTGAAGGAACTTTGATATTCAAACTTCACCATGCACTTGGTGATGGTTACTCTCTCATGGGTGCTCTTCTTTCTTGTCTACAAAGAGCTGATGACCCTTCTCTTCCTTTATCTTTTCCTTCAAAAAGACCACAATTAGATTCAAAATATGCAAAGAAAAGTTTGTTTAAGAAGTTATGTTTAGATATCTCGTCCTTTTTTAGCTCCATATCAGATTTTGGATCAAGCTTAATCAAGACAAGAATGATTGAAGATGACAAAACACCTATAAGGTCAGGATATGAAGGAACTGAATCTCAGCCTTTTACTTTGTCAAACATATCATTATCTCTTGATCAAATCAAAGAGATCAAATCAAAGCTTGGAGTGACTATAAACGATGTGCTTAGTGGGGTGATCTTCTATGGGATTAGGCTATACATGGAGGAGATGAATGAGAAGACAAAAAAATCAAATTCCACCGCTGTAGTAATGCTCAACACAAGAAATATTGAAGGTTACCAATCATTGAAAGAAATGCAAAAACCAGAGTCCAAAAGTCTTTGGGGAAATCAAATTTCTTTCTTACAAATACCTATACCTAAGTTAAGCCAATCAGACCCTCTTGAGTTTGTTTGGAAAGCTCGTAAGTTGATCAAAAGGAAGAGACGTTCTTTCAGTGTTTATCTCATAGGTTTGCTCTTGAATTTAGAGATGAAATTAAAAGGGTCTGAGGCTGTAGCTAAAATAATCTATAACACAATGGGAAATTCAAGTGTTGTTATCTCTAACTTGGTAGGACCAGTGGAGAAAATGGCTTTGGCAAATCATCCAATAAATGGATTTTATTTCACCATGACAGGTGGACCTGAGAATGTAGACATTACAATTATGAGCTATGTGAAAATATTAAGAATCACATTGAGAACATTGAAGGGGTTCATTGATGAACGGAAATTCAAATTCTGCATGGAGAAAGCAGTTGAAGTCATATTCAAAGCAGCTATGGAGATCTCGGAAATACCTGTAAAAAATTAA

Protein sequence

>Msa0648300

MDKFNEEVHEPVSPHGQYFNSSVICSYVFGFLELAIPIDDSQTMPLLKDVFLPINPRFSSIMVRDKDGKMRWQRVEVKLEEHVKIPKFPETTNSSSIELYDNYLSDYVTNILTSRTPQDKPLWEIHLIKYPTSNAEGTLIFKLHHALGDGYSLMGALLSCLQRADDPSLPLSFPSKRPQLDSKYAKKSLFKKLCLDISSFFSSISDFGSSLIKTRMIEDDKTPIRSGYEGTESQPFTLSNISLSLDQIKEIKSKLGVTINDVLSGVIFYGIRLYMEEMNEKTKKSNSTAVVMLNTRNIEGYQSLKEMQKPESKSLWGNQISFLQIPIPKLSQSDPLEFVWKARKLIKRKRRSFSVYLIGLLLNLEMKLKGSEAVAKIIYNTMGNSSVVISNLVGPVEKMALANHPINGFYFTMTGGPENVDITIMSYVKILRITLRTLKGFIDERKFKFCMEKAVEVIFKAAMEISEIPVKN*