AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0073660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073660 MtrunA17_Chr1g0181121 98.972 681 7 0 28 708 1 681 0.0 1405
Msa0073660 MtrunA17_Chr2g0326871 60.452 708 263 4 7 708 7 703 0.0 904
Msa0073660 MtrunA17_Chr4g0028861 65.610 631 201 3 1 629 66 682 0.0 867
Msa0073660 MtrunA17_Chr2g0305771 54.518 664 283 6 58 708 30 687 0.0 739
Msa0073660 MtrunA17_Chr3g0139071 53.614 664 290 6 58 706 60 720 0.0 721
Msa0073660 MtrunA17_Chr7g0228181 49.419 688 311 7 46 708 5 680 0.0 694
Msa0073660 MtrunA17_Chr4g0073941 51.880 665 299 10 51 708 78 728 0.0 691
Msa0073660 MtrunA17_Chr1g0158861 50.358 699 311 10 18 708 44 714 0.0 688
Msa0073660 MtrunA17_Chr3g0126541 51.497 668 298 10 48 708 63 711 0.0 682
Msa0073660 MtrunA17_Chr3g0125651 50.460 652 307 4 71 706 36 687 0.0 677
Msa0073660 MtrunA17_Chr4g0001481 50.000 692 317 14 31 706 59 737 0.0 642
Msa0073660 MtrunA17_Chr7g0275581 49.315 657 299 11 7 638 7 654 0.0 634
Msa0073660 MtrunA17_Chr8g0347121 45.882 680 308 11 1 637 1 663 0.0 600
Msa0073660 MtrunA17_Chr8g0360821 36.319 614 356 13 73 664 64 664 2.95e-119 372
Msa0073660 MtrunA17_Chr6g0480851 36.334 611 364 10 47 641 160 761 2.31e-110 351
Msa0073660 MtrunA17_Chr6g0480781 35.788 584 346 15 71 636 169 741 3.16e-110 351
Msa0073660 MtrunA17_Chr6g0481021 36.573 607 353 12 47 631 99 695 4.91e-109 346
Msa0073660 MtrunA17_Chr6g0480671 38.793 580 316 12 71 627 193 756 6.60e-108 345
Msa0073660 MtrunA17_Chr7g0218341 35.959 584 352 10 71 638 109 686 4.21e-105 336
Msa0073660 MtrunA17_Chr2g0318561 37.748 453 263 8 186 625 2 448 8.10e-95 302
Msa0073660 MtrunA17_Chr6g0480741 33.390 584 353 12 71 634 115 682 6.54e-89 292
Msa0073660 MtrunA17_Chr6g0480681 31.751 611 354 15 71 635 115 708 1.69e-80 271
Msa0073660 MtrunA17_Chr2g0326861 57.513 193 82 0 145 337 14 206 1.31e-77 248
Msa0073660 MtrunA17_Chr5g0395421 37.500 352 192 8 268 605 18 355 2.35e-54 191
Msa0073660 MtrunA17_Chr2g0326851 50.704 142 59 2 567 708 3 133 9.20e-42 148
Msa0073660 MtrunA17_Chr6g0480771 35.317 252 140 7 388 626 12 253 1.22e-33 130
Msa0073660 MtrunA17_Chr5g0395411 33.000 200 120 3 71 269 172 358 1.51e-31 127
Msa0073660 MtrunA17_Chr6g0480841 39.394 198 100 5 442 626 2 192 1.54e-31 122
Msa0073660 MtrunA17_Chr6g0480751 37.313 134 83 1 71 203 98 231 3.91e-23 99.0
Msa0073660 MtrunA17_Chr6g0480791 36.885 122 75 2 71 190 172 293 1.15e-19 90.1
Msa0073660 MtrunA17_Chr4g0063141 21.811 486 281 16 70 545 45 441 8.04e-19 91.3
Msa0073660 MtrunA17_Chr6g0480821 28.824 170 112 6 187 352 25 189 3.43e-16 78.2
Msa0073660 MtrunA17_Chr2g0277651 20.868 484 305 12 122 599 106 517 4.34e-16 82.4
Msa0073660 MtrunA17_Chr5g0434371 26.257 179 129 2 342 520 282 457 3.66e-15 79.7
Msa0073660 MtrunA17_Chr2g0318551 31.609 174 102 8 61 231 54 213 4.54e-15 75.1
Msa0073660 MtrunA17_Chr3g0138671 23.288 219 164 3 341 559 241 455 9.90e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073660 AT2G28260.1 60.313 703 249 2 6 708 6 678 0.0 878
Msa0073660 AT2G28260.2 62.861 657 217 1 52 708 9 638 0.0 871
Msa0073660 AT2G24610.1 50.759 725 326 9 8 708 8 725 0.0 713
Msa0073660 AT2G24610.2 50.761 723 325 9 10 708 25 740 0.0 710
Msa0073660 AT4G30360.1 52.315 648 298 5 71 708 71 717 0.0 704
Msa0073660 AT2G23980.9 49.783 691 332 8 29 708 59 745 0.0 696
Msa0073660 AT2G23980.10 49.783 691 332 8 29 708 59 745 0.0 696
Msa0073660 AT2G23980.1 49.783 691 332 8 29 708 59 745 0.0 696
Msa0073660 AT2G23980.4 49.783 691 332 8 29 708 59 745 0.0 696
Msa0073660 AT2G23980.5 49.783 691 332 8 29 708 59 745 0.0 696
Msa0073660 AT2G23980.6 49.783 691 332 8 29 708 32 718 0.0 696
Msa0073660 AT5G57940.1 51.565 671 292 8 51 708 67 717 0.0 689
Msa0073660 AT5G57940.3 51.565 671 292 8 51 708 60 710 0.0 689
Msa0073660 AT5G57940.2 51.565 671 292 8 51 708 67 717 0.0 689
Msa0073660 AT1G15990.1 49.354 697 326 10 34 708 47 738 0.0 686
Msa0073660 AT4G30560.1 49.569 696 323 8 23 708 53 730 0.0 686
Msa0073660 AT4G30560.4 49.569 696 323 8 23 708 53 730 0.0 686
Msa0073660 AT4G30560.5 49.569 696 323 8 23 708 27 704 0.0 685
Msa0073660 AT4G30560.2 49.569 696 323 8 23 708 27 704 0.0 685
Msa0073660 AT4G30560.3 49.569 696 323 8 23 708 27 704 0.0 685
Msa0073660 AT2G23980.3 48.319 714 331 9 29 708 59 768 0.0 683
Msa0073660 AT2G23980.2 48.319 714 331 9 29 708 59 768 0.0 683
Msa0073660 AT2G23980.8 48.319 714 331 9 29 708 59 768 0.0 683
Msa0073660 AT2G23980.7 48.319 714 331 9 29 708 59 768 0.0 683
Msa0073660 AT1G19780.1 51.347 668 305 9 55 705 80 744 0.0 681
Msa0073660 AT5G53130.1 51.788 643 294 7 71 708 84 715 0.0 673
Msa0073660 AT3G48010.1 54.000 600 260 6 47 636 26 619 0.0 669
Msa0073660 AT5G14870.1 48.281 669 309 7 71 708 40 702 0.0 663
Msa0073660 AT1G01340.2 50.156 642 309 7 71 706 68 704 0.0 656
Msa0073660 AT1G01340.1 50.156 642 309 7 71 706 63 699 0.0 655
Msa0073660 AT4G01010.1 49.851 672 316 9 40 706 37 692 0.0 650
Msa0073660 AT4G01010.2 49.851 672 316 9 40 706 37 692 0.0 650
Msa0073660 AT2G46430.1 48.302 648 310 10 71 708 72 704 0.0 607
Msa0073660 AT2G46430.2 48.302 648 310 10 71 708 72 704 0.0 607
Msa0073660 AT1G19780.2 52.150 535 238 7 186 705 2 533 0.0 547
Msa0073660 AT2G46440.1 45.078 579 301 8 82 653 40 608 1.94e-161 479
Msa0073660 AT2G46450.4 41.166 566 313 8 82 639 40 593 2.33e-149 449
Msa0073660 AT2G46450.1 41.166 566 313 8 82 639 40 593 2.33e-149 449
Msa0073660 AT2G46450.3 39.469 565 301 9 82 639 27 557 6.00e-137 416
Msa0073660 AT2G46450.2 39.469 565 301 9 82 639 40 570 1.41e-136 416
Msa0073660 AT2G46440.2 48.970 437 210 6 223 653 1 430 3.94e-128 387
Msa0073660 AT5G54250.2 35.458 612 372 10 71 664 79 685 1.82e-115 363
Msa0073660 AT5G54250.1 35.458 612 372 10 71 664 79 685 1.82e-115 363
Msa0073660 AT5G54250.4 35.458 612 372 10 71 664 79 685 1.82e-115 363
Msa0073660 AT3G17690.1 33.887 602 371 14 52 638 139 728 2.06e-111 353
Msa0073660 AT5G54250.3 34.804 612 371 11 71 664 79 680 4.11e-110 349
Msa0073660 AT3G17700.1 36.752 585 343 14 52 621 173 745 6.34e-109 348
Msa0073660 AT5G15410.2 35.889 574 342 11 67 621 110 676 1.11e-105 338
Msa0073660 AT5G15410.1 35.889 574 342 11 67 621 111 677 1.20e-105 338
Msa0073660 AT3G17690.2 33.794 506 318 9 52 552 139 632 1.60e-97 314
Msa0073660 AT3G17700.2 36.364 506 306 10 52 553 173 666 6.03e-97 314
Msa0073660 AT3G17690.3 32.115 383 250 7 52 429 139 516 1.32e-64 223
Msa0073660 AT3G02850.3 22.323 439 267 12 82 520 85 449 7.38e-18 88.2
Msa0073660 AT3G02850.2 22.323 439 267 12 82 520 85 449 1.60e-17 87.4
Msa0073660 AT3G02850.1 22.779 439 265 13 82 520 85 449 2.95e-17 86.7
Msa0073660 AT5G37500.3 25.543 184 134 2 342 525 203 383 8.86e-14 75.5
Msa0073660 AT5G37500.4 25.683 183 133 2 342 524 257 436 9.84e-14 75.5
Msa0073660 AT4G22200.2 19.249 426 274 8 121 545 107 463 9.87e-14 75.1
Msa0073660 AT4G22200.1 19.249 426 274 8 121 545 107 463 1.12e-13 75.1
Msa0073660 AT5G37500.2 25.683 183 133 2 342 524 257 436 1.33e-13 75.1
Msa0073660 AT5G37500.1 25.683 183 133 2 342 524 257 436 1.36e-13 75.1
Msa0073660 AT4G32650.3 22.581 217 164 3 343 559 276 488 2.13e-12 70.9
Msa0073660 AT4G32650.1 22.581 217 164 3 343 559 276 488 2.25e-12 70.9
Msa0073660 AT4G32650.2 22.581 217 164 3 343 559 276 488 2.84e-12 70.5

Find 133 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTTCATCTCGTGTTTC+TGG 0.112326 1_2:+47508867 Msa0073660:CDS
ATGATGATTAAAGGAAATTT+AGG 0.192813 1_2:+47511993 Msa0073660:exon
ACATTATTCATATCTATATT+AGG 0.216780 1_2:+47508826 Msa0073660:CDS
GAAAACTAGTAGGTAGTTTA+AGG 0.218586 1_2:+47511894 Msa0073660:CDS
GCTGTGATTGTTGCAATTCT+TGG 0.224686 1_2:+47510341 Msa0073660:CDS
CCAAGTATTATTATTGTCTT+TGG 0.233035 1_2:+47510152 Msa0073660:CDS
TTAAGCCAAGCATTCCTATT+TGG 0.253153 1_2:-47510025 None:intergenic
TCAAGTTATTCAATGTATTC+TGG 0.255289 1_2:+47511872 Msa0073660:CDS
CCTCAATAAGTACTGGAAAA+TGG 0.258411 1_2:-47509414 None:intergenic
ATGTCAAATGTGAAATATTA+TGG 0.260963 1_2:+47511800 Msa0073660:CDS
GAGGACCTAGAATAAATTTA+TGG 0.262159 1_2:+47508652 Msa0073660:CDS
TTACTTGTCTAACTAGATTA+AGG 0.272354 1_2:-47510850 None:intergenic
TTGTTCCATAAATTTATTCT+AGG 0.278851 1_2:-47508657 None:intergenic
TGAATAATTTGCAGCTCTTC+AGG 0.282771 1_2:+47510275 Msa0073660:intron
TTGATATGCTTGGTACATTA+AGG 0.286363 1_2:+47511948 Msa0073660:CDS
ATTGAATAACTTGATCCTTT+TGG 0.295632 1_2:-47511863 None:intergenic
AACAGTCACTTCTTTCAGTT+TGG 0.303420 1_2:+47510079 Msa0073660:CDS
TGCATCAAACTACATGAAAA+AGG 0.316525 1_2:+47508923 Msa0073660:CDS
AGCAGTCGGGCGAGGGTCTA+AGG 0.321153 1_2:-47511528 None:intergenic
CTTGTCTTTCAATTGATAAC+AGG 0.322976 1_2:-47509922 None:intergenic
GCTGTAATTCCAAATATAAA+AGG 0.326602 1_2:+47509350 Msa0073660:CDS
TCATTAAAATCTGGTTCAAT+AGG 0.330248 1_2:-47511974 None:intergenic
GACAATCAAGATAATGATAT+TGG 0.332462 1_2:-47509988 None:intergenic
TATAATGCTAGGTACTCATT+TGG 0.340611 1_2:+47509327 Msa0073660:intron
TTAGGAATGAATAGTTGTTA+TGG 0.342658 1_2:+47512011 Msa0073660:three_prime_UTR
CTTTAATCATCATTAAAATC+TGG 0.344512 1_2:-47511983 None:intergenic
GGTGGGGATTGAGGAATCTA+AGG 0.352167 1_2:+47510173 Msa0073660:CDS
GAAGCTTAAGTGATCCAAAT+AGG 0.355960 1_2:+47510011 Msa0073660:CDS
ACCTTCAGTCGACCACTATA+CGG 0.366372 1_2:+47510636 Msa0073660:CDS
GACAAATGAGGTTAAGGAAA+AGG 0.372638 1_2:+47511763 Msa0073660:CDS
TGTGTATTAATTAGTATCAT+TGG 0.376461 1_2:+47512063 Msa0073660:three_prime_UTR
CTAGGGTCAAGGATGGAATT+AGG 0.378867 1_2:+47512168 Msa0073660:three_prime_UTR
GAAAGAGACAAATGAGGTTA+AGG 0.381363 1_2:+47511757 Msa0073660:CDS
TTGTTTGATTTCATTGTTTG+TGG 0.391370 1_2:+47508695 Msa0073660:CDS
TTATACAAGCAGCTTGGTTT+CGG 0.394586 1_2:+47511723 Msa0073660:CDS
GACGCCATGACCAATTTAGA+TGG 0.405101 1_2:+47510744 Msa0073660:CDS
CATCATTACTCCACTTGCCT+TGG 0.413407 1_2:-47509471 None:intergenic
TCGCGAACTATGCAAGTTCC+TGG 0.414941 1_2:-47511365 None:intergenic
GCAGTTGTTTGCTATGTAAC+CGG 0.423277 1_2:-47511649 None:intergenic
GGAAGCACAGCAGTCGGGCG+AGG 0.431265 1_2:-47511536 None:intergenic
ATATCACGTCTTAGATCAAC+AGG 0.432458 1_2:-47510812 None:intergenic
GTATTATTATTGTCTTTGGT+GGG 0.441309 1_2:+47510156 Msa0073660:CDS
AGTCCTCTTCCATTTGATGA+TGG 0.444375 1_2:-47508573 None:intergenic
AGAGGAAGAAGCATGAGATA+TGG 0.449560 1_2:+47511917 Msa0073660:CDS
ATTGTCTTTGGTGGGGATTG+AGG 0.450681 1_2:+47510164 Msa0073660:CDS
ATATTTCTCTGCACCTCTGC+AGG 0.451022 1_2:+47511838 Msa0073660:CDS
TCTTAATAGCCATTGTCAAA+TGG 0.455145 1_2:-47512211 None:intergenic
ACGACCAACGGTGGTAGAAC+TGG 0.455245 1_2:+47511443 Msa0073660:CDS
GAGTAGCTACCCATCTAAAT+TGG 0.455345 1_2:-47510754 None:intergenic
CTTAAATCAAGCAATCTATC+AGG 0.455643 1_2:+47510043 Msa0073660:CDS
AGTATTATTATTGTCTTTGG+TGG 0.455701 1_2:+47510155 Msa0073660:CDS
TCATCTCGTGTTTCTGGTCG+AGG 0.464605 1_2:+47508873 Msa0073660:CDS
GATTGTTGCAATTCTTGGAT+TGG 0.464760 1_2:+47510346 Msa0073660:CDS
CTCACTGTGCGAGTTGATGA+AGG 0.471556 1_2:-47511557 None:intergenic
CAAGGCAAGTGGAGTAATGA+TGG 0.472612 1_2:+47509472 Msa0073660:CDS
ATGTATTCTGGAAAACTAGT+AGG 0.473124 1_2:+47511884 Msa0073660:CDS
GTGATCCAAATAGGAATGCT+TGG 0.473435 1_2:+47510020 Msa0073660:CDS
ATAATGCTAGGTACTCATTT+GGG 0.476442 1_2:+47509328 Msa0073660:intron
GTAGTTTGATGCAATCTTTG+AGG 0.478756 1_2:-47508913 None:intergenic
ATGAATAGTTGTTATGGAGA+AGG 0.485081 1_2:+47512017 Msa0073660:three_prime_UTR
AAGTGTATTGATATGTCAAT+TGG 0.485639 1_2:+47508756 Msa0073660:CDS
AAATTTATTCTAGGTCCTCT+AGG 0.487175 1_2:-47508648 None:intergenic
ATAAACAAGCCATCATCAAA+TGG 0.489789 1_2:+47508564 Msa0073660:CDS
TTGAAAGACAAGATGAATGT+TGG 0.490493 1_2:+47509933 Msa0073660:CDS
ATGAAGAGCATTTCGTCGAC+AGG 0.493141 1_2:-47511395 None:intergenic
GATACAACCTCAATAAGTAC+TGG 0.495573 1_2:-47509421 None:intergenic
CAGAAAGATGGATGCATCAC+AGG 0.496553 1_2:+47510690 Msa0073660:CDS
TGCTACAAACTTTAAATCCT+CGG 0.498284 1_2:-47511615 None:intergenic
CTGTAATTCCAAATATAAAA+GGG 0.501630 1_2:+47509351 Msa0073660:CDS
CCAAAGACAATAATAATACT+TGG 0.503297 1_2:-47510152 None:intergenic
GCACCTCTGCAGGTGCCAAA+AGG 0.504350 1_2:+47511848 Msa0073660:CDS
CAGGAATATACCTGAGGAAG+TGG 0.505032 1_2:-47508975 None:intergenic
GAAATGCTCTTCATCGTTCG+AGG 0.508603 1_2:+47511404 Msa0073660:CDS
TCATCCATCTGATCAAATAG+TGG 0.519800 1_2:-47511293 None:intergenic
TTAATTAGTATCATTGGTAG+CGG 0.523534 1_2:+47512069 Msa0073660:three_prime_UTR
GAGTGCAAATGCTTCGACTT+CGG 0.524247 1_2:-47511588 None:intergenic
ATCAAGGCATGTAGTTCGCC+TGG 0.524733 1_2:+47509388 Msa0073660:CDS
AAATGCTTCGACTTCGGTGA+TGG 0.525158 1_2:-47511582 None:intergenic
TTAGATTCTATTCACATCAG+TGG 0.525876 1_2:+47511681 Msa0073660:CDS
CCACTCTTCCAGCCGTATAG+TGG 0.529262 1_2:-47510648 None:intergenic
TGCAGCACTACCACTTCCTC+AGG 0.529548 1_2:+47508965 Msa0073660:CDS
TATTATTATTGTCTTTGGTG+GGG 0.530464 1_2:+47510157 Msa0073660:CDS
ATTCACATCAGTGGAGGACA+TGG 0.530701 1_2:+47511690 Msa0073660:CDS
TCAGTCGACCACTATACGGC+TGG 0.534115 1_2:+47510640 Msa0073660:CDS
TTGGTTATCTTAGATGATAG+AGG 0.537065 1_2:-47509452 None:intergenic
AACACCTGCAAAATAGGCTC+AGG 0.540038 1_2:+47511473 Msa0073660:CDS
GGTACCACTATTTGATCAGA+TGG 0.540996 1_2:+47511289 Msa0073660:intron
ATGAAGGAAGCACAGCAGTC+GGG 0.542108 1_2:-47511541 None:intergenic
CTGTTATATCAAGAGTCGTA+AGG 0.542793 1_2:+47508182 Msa0073660:CDS
GTTCCTGGAGTGCATAGAGT+TGG 0.542992 1_2:-47511350 None:intergenic
GGTTCTGAACTTGATATGCT+TGG 0.544592 1_2:+47511938 Msa0073660:CDS
CGACCAGAAACACGAGATGA+AGG 0.546693 1_2:-47508870 None:intergenic
CCACTATACGGCTGGAAGAG+TGG 0.546695 1_2:+47510648 Msa0073660:CDS
TATTTGATCAGATGGATGAC+AGG 0.547337 1_2:+47511297 Msa0073660:CDS
GAAGCACAGCAGTCGGGCGA+GGG 0.550622 1_2:-47511535 None:intergenic
TTAGATTCTTGCACGACCAA+CGG 0.554372 1_2:+47511431 Msa0073660:CDS
GAAGGACAGATACAGAAAGA+TGG 0.556176 1_2:+47510678 Msa0073660:CDS
GAGAATGAAAGAGACAAATG+AGG 0.556459 1_2:+47511751 Msa0073660:CDS
GATGAAGGAAGCACAGCAGT+CGG 0.561063 1_2:-47511542 None:intergenic
TGGAAGAGTGGCGAATAAGA+AGG 0.567637 1_2:+47510660 Msa0073660:CDS
GTCTAACTAGATTAAGGCAA+AGG 0.567848 1_2:-47510844 None:intergenic
AAGCCATCATCAAATGGAAG+AGG 0.574296 1_2:+47508570 Msa0073660:CDS
CTAGTAGGTAGTTTAAGGAG+AGG 0.578326 1_2:+47511899 Msa0073660:CDS
TTGTAGCAGCACAATTCCGC+CGG 0.583306 1_2:+47511630 Msa0073660:CDS
CTACCCATCTAAATTGGTCA+TGG 0.585160 1_2:-47510748 None:intergenic
ACGCCATGACCAATTTAGAT+GGG 0.585828 1_2:+47510745 Msa0073660:CDS
AAACCAACTCTATGCACTCC+AGG 0.588925 1_2:+47511347 Msa0073660:CDS
GATTCTATTCACATCAGTGG+AGG 0.595512 1_2:+47511684 Msa0073660:CDS
GCCGTATAGTGGTCGACTGA+AGG 0.598512 1_2:-47510637 None:intergenic
GGGCGAGGGTCTAAGGCCCA+TGG 0.598732 1_2:-47511521 None:intergenic
AGCTACTCGTGGAGTTGACG+AGG 0.602552 1_2:+47510769 Msa0073660:CDS
TGTTAGATGCAATATGTGAA+AGG 0.604722 1_2:+47511321 Msa0073660:CDS
AGCATTTGCACTCATTGCCG+AGG 0.611919 1_2:+47511598 Msa0073660:CDS
CTGATGTGAATAGAATCTAA+AGG 0.613822 1_2:-47511678 None:intergenic
TCTAAGATAACCAAGGCAAG+TGG 0.615553 1_2:+47509461 Msa0073660:CDS
ATGAGGAGTGAATACAAGCA+TGG 0.616963 1_2:+47508531 Msa0073660:CDS
GCAGCTCCCTCGTTACCTGA+AGG 0.626636 1_2:+47510712 Msa0073660:CDS
AGATAATGATATTGGCAATG+TGG 0.627476 1_2:-47509980 None:intergenic
TTTAGATGGGTAGCTACTCG+TGG 0.627869 1_2:+47510758 Msa0073660:CDS
GGTCAGAAATGATTGCATCA+AGG 0.631571 1_2:+47509372 Msa0073660:CDS
ATAGGCTCAGGTGACTTCTG+TGG 0.636152 1_2:+47511485 Msa0073660:CDS
TAACTAGATTAAGGCAAAGG+TGG 0.642852 1_2:-47510841 None:intergenic
TGAAGAGCATTTCGTCGACA+GGG 0.649007 1_2:-47511394 None:intergenic
ACTGGTAAGTAAAAGAAAAG+CGG 0.650318 1_2:-47508720 None:intergenic
AAAACCAGTTCTACCACCGT+TGG 0.651859 1_2:-47511447 None:intergenic
AGAAGGTGAAGAAAGTCACA+TGG 0.653076 1_2:+47508491 Msa0073660:CDS
AGTACTGGAAAATGGACACC+AGG 0.653611 1_2:-47509406 None:intergenic
TTCACATCAGTGGAGGACAT+GGG 0.654472 1_2:+47511691 Msa0073660:CDS
TCTATCATCTAAGATAACCA+AGG 0.655489 1_2:+47509454 Msa0073660:CDS
GTTGTTTGCTATGTAACCGG+CGG 0.669626 1_2:-47511646 None:intergenic
GGAACTTGCATAGTTCGCGA+AGG 0.671911 1_2:+47511368 Msa0073660:CDS
AAATGAGTGCATATGAGATG+AGG 0.698871 1_2:+47508514 Msa0073660:CDS
GATTCTTGCACGACCAACGG+TGG 0.711618 1_2:+47511434 Msa0073660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATTACAATGTTAAA+GGG - chr1_2:47508221-47508240 None:intergenic 10.0%
!!! TTTTTTTACAAAAATATGTT+CGG + chr1_2:47508405-47508424 Msa0073660:intron 10.0%
!! CATATTAATTACAATGTTAA+AGG - chr1_2:47508222-47508241 None:intergenic 15.0%
!! AAAATAATGATATAGTACAA+TGG - chr1_2:47508271-47508290 None:intergenic 15.0%
!! ACATTATTCATATCTATATT+AGG + chr1_2:47508826-47508845 Msa0073660:CDS 15.0%
!! GATAATTAAAAATGAATATC+AGG - chr1_2:47508997-47509016 None:intergenic 15.0%
!! AATAAGCTAAAAACAATTTA+TGG - chr1_2:47509721-47509740 None:intergenic 15.0%
!! TATGAAAATAAAACAACTTA+TGG + chr1_2:47510581-47510600 Msa0073660:intron 15.0%
!! AAGCTAATATACAACAAAAA+TGG + chr1_2:47508156-47508175 Msa0073660:exon 20.0%
!! TTGTTCCATAAATTTATTCT+AGG - chr1_2:47508660-47508679 None:intergenic 20.0%
!!! TATTTTAATTATGCGAAGAA+CGG - chr1_2:47509261-47509280 None:intergenic 20.0%
!! GATAATTCATATATAATGCT+AGG + chr1_2:47509316-47509335 Msa0073660:intron 20.0%
!! CTGTAATTCCAAATATAAAA+GGG + chr1_2:47509351-47509370 Msa0073660:CDS 20.0%
!!! GTATTACGAAAAACATTTTT+CGG - chr1_2:47509567-47509586 None:intergenic 20.0%
!!! ACCTTTTCTTTATTTCAAAA+AGG + chr1_2:47509880-47509899 Msa0073660:intron 20.0%
!!! ACCTTTTTGAAATAAAGAAA+AGG - chr1_2:47509884-47509903 None:intergenic 20.0%
!!! CTTTATTTCAAAAAGGTTTT+AGG + chr1_2:47509887-47509906 Msa0073660:intron 20.0%
!! AGAATTGGTTAGAATAAATA+TGG - chr1_2:47510254-47510273 None:intergenic 20.0%
!!! TATCTTTTGTAGTAGAAATT+TGG - chr1_2:47510534-47510553 None:intergenic 20.0%
!! ATTCACTAATTTAGATTAGA+CGG + chr1_2:47510951-47510970 Msa0073660:intron 20.0%
!! AAAAATTATGTGATTAAGAG+TGG - chr1_2:47511161-47511180 None:intergenic 20.0%
!!! AATAAGAATGAAGTACTAAT+TGG + chr1_2:47511252-47511271 Msa0073660:intron 20.0%
!! ATGTCAAATGTGAAATATTA+TGG + chr1_2:47511800-47511819 Msa0073660:CDS 20.0%
!! CTTTAATCATCATTAAAATC+TGG - chr1_2:47511986-47512005 None:intergenic 20.0%
!!! CAGATTTTAATGATGATTAA+AGG + chr1_2:47511984-47512003 Msa0073660:CDS 20.0%
!! ATGATGATTAAAGGAAATTT+AGG + chr1_2:47511993-47512012 Msa0073660:exon 20.0%
!! TGTGTATTAATTAGTATCAT+TGG + chr1_2:47512063-47512082 Msa0073660:three_prime_UTR 20.0%
!!! GCATAACTTATATCAATTTT+AGG + chr1_2:47512145-47512164 Msa0073660:three_prime_UTR 20.0%
! GAAAAAGAGAAATTACAAGA+AGG + chr1_2:47508474-47508493 Msa0073660:CDS 25.0%
!! TTGTTTGATTTCATTGTTTG+TGG + chr1_2:47508695-47508714 Msa0073660:CDS 25.0%
!! AAGTGTATTGATATGTCAAT+TGG + chr1_2:47508756-47508775 Msa0073660:CDS 25.0%
!! ACTACATGAAAAAGGAATTT+TGG + chr1_2:47508931-47508950 Msa0073660:CDS 25.0%
! TTATTGCGACATTAATTCTT+TGG - chr1_2:47509098-47509117 None:intergenic 25.0%
! TATGTTTAAATGTTCAGTGT+TGG + chr1_2:47509196-47509215 Msa0073660:intron 25.0%
!!! AATTTTATGGTTTGCAAACA+TGG + chr1_2:47509283-47509302 Msa0073660:intron 25.0%
! GCTGTAATTCCAAATATAAA+AGG + chr1_2:47509350-47509369 Msa0073660:CDS 25.0%
!! ATTTCTGACCCTTTTATATT+TGG - chr1_2:47509362-47509381 None:intergenic 25.0%
! GACAATCAAGATAATGATAT+TGG - chr1_2:47509991-47510010 None:intergenic 25.0%
! CCAAAGACAATAATAATACT+TGG - chr1_2:47510155-47510174 None:intergenic 25.0%
! CCAAGTATTATTATTGTCTT+TGG + chr1_2:47510152-47510171 Msa0073660:CDS 25.0%
! AGTATTATTATTGTCTTTGG+TGG + chr1_2:47510155-47510174 Msa0073660:CDS 25.0%
! GTATTATTATTGTCTTTGGT+GGG + chr1_2:47510156-47510175 Msa0073660:CDS 25.0%
! TATTATTATTGTCTTTGGTG+GGG + chr1_2:47510157-47510176 Msa0073660:CDS 25.0%
! CTGCAAATTATTCATAGAAT+TGG - chr1_2:47510269-47510288 None:intergenic 25.0%
! TTACTTGTCTAACTAGATTA+AGG - chr1_2:47510853-47510872 None:intergenic 25.0%
!! GCTTTTTATTACACAGATTA+TGG + chr1_2:47510907-47510926 Msa0073660:intron 25.0%
! TTCTAAATCAGTAACAATTG+TGG + chr1_2:47511026-47511045 Msa0073660:intron 25.0%
! ATATTCCAGAAATTCATTCA+TGG + chr1_2:47511061-47511080 Msa0073660:intron 25.0%
!! ATTGAATAACTTGATCCTTT+TGG - chr1_2:47511866-47511885 None:intergenic 25.0%
! TCAAGTTATTCAATGTATTC+TGG + chr1_2:47511872-47511891 Msa0073660:CDS 25.0%
!! TCATTAAAATCTGGTTCAAT+AGG - chr1_2:47511977-47511996 None:intergenic 25.0%
! TTAGGAATGAATAGTTGTTA+TGG + chr1_2:47512011-47512030 Msa0073660:three_prime_UTR 25.0%
! TTAATTAGTATCATTGGTAG+CGG + chr1_2:47512069-47512088 Msa0073660:three_prime_UTR 25.0%
!! ACTTATATCAATTTTAGGCT+AGG + chr1_2:47512150-47512169 Msa0073660:three_prime_UTR 25.0%
!! CTTATATCAATTTTAGGCTA+GGG + chr1_2:47512151-47512170 Msa0073660:three_prime_UTR 25.0%
ATAAACAAGCCATCATCAAA+TGG + chr1_2:47508564-47508583 Msa0073660:CDS 30.0%
!! ATTTTAGTATTCGATCCTAG+AGG + chr1_2:47508633-47508652 Msa0073660:CDS 30.0%
AAATTTATTCTAGGTCCTCT+AGG - chr1_2:47508651-47508670 None:intergenic 30.0%
GAGGACCTAGAATAAATTTA+TGG + chr1_2:47508652-47508671 Msa0073660:CDS 30.0%
ACTGGTAAGTAAAAGAAAAG+CGG - chr1_2:47508723-47508742 None:intergenic 30.0%
TGCATCAAACTACATGAAAA+AGG + chr1_2:47508923-47508942 Msa0073660:CDS 30.0%
TATAATGCTAGGTACTCATT+TGG + chr1_2:47509327-47509346 Msa0073660:intron 30.0%
ATAATGCTAGGTACTCATTT+GGG + chr1_2:47509328-47509347 Msa0073660:intron 30.0%
TTGGTTATCTTAGATGATAG+AGG - chr1_2:47509455-47509474 None:intergenic 30.0%
! TCTATCATCTAAGATAACCA+AGG + chr1_2:47509454-47509473 Msa0073660:CDS 30.0%
! AGTAATGATGGAAAAAGCTT+GGG + chr1_2:47509484-47509503 Msa0073660:CDS 30.0%
CTTATTTCCGTAAGTTCTAT+AGG + chr1_2:47509735-47509754 Msa0073660:intron 30.0%
AAGCTATCCTATAGAACTTA+CGG - chr1_2:47509745-47509764 None:intergenic 30.0%
TAAGAAATGAATCAGAAGCA+AGG - chr1_2:47509860-47509879 None:intergenic 30.0%
!!! AAAAGGTTTTAGGATCAACT+TGG + chr1_2:47509897-47509916 Msa0073660:intron 30.0%
! CTTGTCTTTCAATTGATAAC+AGG - chr1_2:47509925-47509944 None:intergenic 30.0%
TTGAAAGACAAGATGAATGT+TGG + chr1_2:47509933-47509952 Msa0073660:CDS 30.0%
AGATAATGATATTGGCAATG+TGG - chr1_2:47509983-47510002 None:intergenic 30.0%
CTTAAATCAAGCAATCTATC+AGG + chr1_2:47510043-47510062 Msa0073660:CDS 30.0%
! TTTTTATGATGCTGTGACTT+TGG + chr1_2:47510105-47510124 Msa0073660:CDS 30.0%
ACATACATATATCACGGAAA+AGG - chr1_2:47510443-47510462 None:intergenic 30.0%
TGTTAGATGCAATATGTGAA+AGG + chr1_2:47511321-47511340 Msa0073660:CDS 30.0%
!! TTTTTCAACACCTGCAAAAT+AGG + chr1_2:47511467-47511486 Msa0073660:CDS 30.0%
TGCTACAAACTTTAAATCCT+CGG - chr1_2:47511618-47511637 None:intergenic 30.0%
CTGATGTGAATAGAATCTAA+AGG - chr1_2:47511681-47511700 None:intergenic 30.0%
TTAGATTCTATTCACATCAG+TGG + chr1_2:47511681-47511700 Msa0073660:CDS 30.0%
! ATGTATTCTGGAAAACTAGT+AGG + chr1_2:47511884-47511903 Msa0073660:CDS 30.0%
GAAAACTAGTAGGTAGTTTA+AGG + chr1_2:47511894-47511913 Msa0073660:CDS 30.0%
TTGATATGCTTGGTACATTA+AGG + chr1_2:47511948-47511967 Msa0073660:CDS 30.0%
ATGAATAGTTGTTATGGAGA+AGG + chr1_2:47512017-47512036 Msa0073660:three_prime_UTR 30.0%
CTGTTATATCAAGAGTCGTA+AGG + chr1_2:47508182-47508201 Msa0073660:CDS 35.0%
ATGTATCAACTCATACCACT+AGG - chr1_2:47508331-47508350 None:intergenic 35.0%
AAATGAGTGCATATGAGATG+AGG + chr1_2:47508514-47508533 Msa0073660:CDS 35.0%
!! TTTTCTGAAGATTATGACGC+AGG + chr1_2:47508606-47508625 Msa0073660:CDS 35.0%
! CACTTTTCTTTCTTAGCAAC+TGG - chr1_2:47508741-47508760 None:intergenic 35.0%
GTAGTTTGATGCAATCTTTG+AGG - chr1_2:47508916-47508935 None:intergenic 35.0%
GAATATCAGGAATATACCTG+AGG - chr1_2:47508984-47509003 None:intergenic 35.0%
ATAAATCACTTCATCCTCCA+AGG + chr1_2:47509020-47509039 Msa0073660:intron 35.0%
TAAATCACTTCATCCTCCAA+GGG + chr1_2:47509021-47509040 Msa0073660:intron 35.0%
CAATGAATTGTTAGCCATGT+AGG - chr1_2:47509123-47509142 None:intergenic 35.0%
!! AATGTTCAGTGTTGGTTTGT+AGG + chr1_2:47509204-47509223 Msa0073660:intron 35.0%
!! ATGTTCAGTGTTGGTTTGTA+GGG + chr1_2:47509205-47509224 Msa0073660:intron 35.0%
AACGGCTAATACATTCTTTC+AGG - chr1_2:47509243-47509262 None:intergenic 35.0%
!! CCTCAATAAGTACTGGAAAA+TGG - chr1_2:47509417-47509436 None:intergenic 35.0%
! CCATTTTCCAGTACTTATTG+AGG + chr1_2:47509414-47509433 Msa0073660:CDS 35.0%
GATACAACCTCAATAAGTAC+TGG - chr1_2:47509424-47509443 None:intergenic 35.0%
! GAGTAATGATGGAAAAAGCT+TGG + chr1_2:47509483-47509502 Msa0073660:CDS 35.0%
CGTAATACTTGCGATCAAAA+TGG + chr1_2:47509579-47509598 Msa0073660:intron 35.0%
AGCATTTGTGATACTGTTTG+AGG + chr1_2:47509629-47509648 Msa0073660:intron 35.0%
GAAGCTTAAGTGATCCAAAT+AGG + chr1_2:47510011-47510030 Msa0073660:CDS 35.0%
TTAAGCCAAGCATTCCTATT+TGG - chr1_2:47510028-47510047 None:intergenic 35.0%
AACAGTCACTTCTTTCAGTT+TGG + chr1_2:47510079-47510098 Msa0073660:CDS 35.0%
! TGAATAATTTGCAGCTCTTC+AGG + chr1_2:47510275-47510294 Msa0073660:intron 35.0%
GATTGTTGCAATTCTTGGAT+TGG + chr1_2:47510346-47510365 Msa0073660:CDS 35.0%
AGCAGGACATACATATATCA+CGG - chr1_2:47510449-47510468 None:intergenic 35.0%
GTATGTCCTGCTTAGATAAA+CGG + chr1_2:47510457-47510476 Msa0073660:intron 35.0%
TGTAAACCGTTTATCTAAGC+AGG - chr1_2:47510466-47510485 None:intergenic 35.0%
ATATCACGTCTTAGATCAAC+AGG - chr1_2:47510815-47510834 None:intergenic 35.0%
TAACTAGATTAAGGCAAAGG+TGG - chr1_2:47510844-47510863 None:intergenic 35.0%
GTCTAACTAGATTAAGGCAA+AGG - chr1_2:47510847-47510866 None:intergenic 35.0%
TATTTGCACGTAAAGTAGAG+CGG - chr1_2:47510996-47511015 None:intergenic 35.0%
CTTGACCATGAATGAATTTC+TGG - chr1_2:47511069-47511088 None:intergenic 35.0%
TAATTGGACACTAATTGCAC+AGG + chr1_2:47511268-47511287 Msa0073660:intron 35.0%
TCATCCATCTGATCAAATAG+TGG - chr1_2:47511296-47511315 None:intergenic 35.0%
TATTTGATCAGATGGATGAC+AGG + chr1_2:47511297-47511316 Msa0073660:CDS 35.0%
! CATGTTTTATACAAGCAGCT+TGG + chr1_2:47511717-47511736 Msa0073660:CDS 35.0%
TTATACAAGCAGCTTGGTTT+CGG + chr1_2:47511723-47511742 Msa0073660:CDS 35.0%
GAGAATGAAAGAGACAAATG+AGG + chr1_2:47511751-47511770 Msa0073660:CDS 35.0%
GAAAGAGACAAATGAGGTTA+AGG + chr1_2:47511757-47511776 Msa0073660:CDS 35.0%
GACAAATGAGGTTAAGGAAA+AGG + chr1_2:47511763-47511782 Msa0073660:CDS 35.0%
ATACCACTAGGCTACTTCTT+CGG - chr1_2:47508319-47508338 None:intergenic 40.0%
TCGAATGAGTTCTATCTAGC+AGG + chr1_2:47508350-47508369 Msa0073660:intron 40.0%
AGTTCTATCTAGCAGGTCTA+GGG + chr1_2:47508357-47508376 Msa0073660:intron 40.0%
! TTCAGTGTTGTTGTGAACTC+AGG + chr1_2:47508436-47508455 Msa0073660:intron 40.0%
AGAAGGTGAAGAAAGTCACA+TGG + chr1_2:47508491-47508510 Msa0073660:CDS 40.0%
ATGAGGAGTGAATACAAGCA+TGG + chr1_2:47508531-47508550 Msa0073660:CDS 40.0%
AAGCCATCATCAAATGGAAG+AGG + chr1_2:47508570-47508589 Msa0073660:CDS 40.0%
AGTCCTCTTCCATTTGATGA+TGG - chr1_2:47508576-47508595 None:intergenic 40.0%
TGCGACATTAATTCTTTGGC+TGG - chr1_2:47509094-47509113 None:intergenic 40.0%
ATGTCGCAATAATGCCTACA+TGG + chr1_2:47509106-47509125 Msa0073660:intron 40.0%
TTGTACTCGCTCACACTTTA+CGG - chr1_2:47509174-47509193 None:intergenic 40.0%
GGTCAGAAATGATTGCATCA+AGG + chr1_2:47509372-47509391 Msa0073660:CDS 40.0%
! TCTAAGATAACCAAGGCAAG+TGG + chr1_2:47509461-47509480 Msa0073660:CDS 40.0%
GTGATCCAAATAGGAATGCT+TGG + chr1_2:47510020-47510039 Msa0073660:CDS 40.0%
GCTGTGATTGTTGCAATTCT+TGG + chr1_2:47510341-47510360 Msa0073660:CDS 40.0%
CAGCTTAAGCTATACTAGAG+AGG + chr1_2:47510557-47510576 Msa0073660:intron 40.0%
GAAGGACAGATACAGAAAGA+TGG + chr1_2:47510678-47510697 Msa0073660:CDS 40.0%
! CATTTTCCTTCAGGTAACGA+GGG - chr1_2:47510721-47510740 None:intergenic 40.0%
! ACATTTTCCTTCAGGTAACG+AGG - chr1_2:47510722-47510741 None:intergenic 40.0%
ACGCCATGACCAATTTAGAT+GGG + chr1_2:47510745-47510764 Msa0073660:CDS 40.0%
CTACCCATCTAAATTGGTCA+TGG - chr1_2:47510751-47510770 None:intergenic 40.0%
GAGTAGCTACCCATCTAAAT+TGG - chr1_2:47510757-47510776 None:intergenic 40.0%
TTTAGATTAGACGGATCTGC+TGG + chr1_2:47510960-47510979 Msa0073660:intron 40.0%
TTAGATTAGACGGATCTGCT+GGG + chr1_2:47510961-47510980 Msa0073660:intron 40.0%
! GACCAATGCGATCTCAATTT+TGG + chr1_2:47511092-47511111 Msa0073660:intron 40.0%
GACCAAAATTGAGATCGCAT+TGG - chr1_2:47511097-47511116 None:intergenic 40.0%
GGTACCACTATTTGATCAGA+TGG + chr1_2:47511289-47511308 Msa0073660:intron 40.0%
TTAGATTCTTGCACGACCAA+CGG + chr1_2:47511431-47511450 Msa0073660:CDS 40.0%
! TGGTGAAGAGCTTTTACCAT+GGG + chr1_2:47511505-47511524 Msa0073660:CDS 40.0%
!! GCAGTTGTTTGCTATGTAAC+CGG - chr1_2:47511652-47511671 None:intergenic 40.0%
GATTCTATTCACATCAGTGG+AGG + chr1_2:47511684-47511703 Msa0073660:CDS 40.0%
CTAGTAGGTAGTTTAAGGAG+AGG + chr1_2:47511899-47511918 Msa0073660:CDS 40.0%
! AGAGGAAGAAGCATGAGATA+TGG + chr1_2:47511917-47511936 Msa0073660:CDS 40.0%
!! GGTTCTGAACTTGATATGCT+TGG + chr1_2:47511938-47511957 Msa0073660:CDS 40.0%
! TCAATTTTAGGCTAGGGTCA+AGG + chr1_2:47512157-47512176 Msa0073660:three_prime_UTR 40.0%
ATTCCGAAGAAGTAGCCTAG+TGG + chr1_2:47508313-47508332 Msa0073660:intron 45.0%
GAGTTCTATCTAGCAGGTCT+AGG + chr1_2:47508356-47508375 Msa0073660:intron 45.0%
CAGGAATATACCTGAGGAAG+TGG - chr1_2:47508978-47508997 None:intergenic 45.0%
TGTACTCGCTCACACTTTAC+GGG - chr1_2:47509173-47509192 None:intergenic 45.0%
! AGTACTGGAAAATGGACACC+AGG - chr1_2:47509409-47509428 None:intergenic 45.0%
CATCATTACTCCACTTGCCT+TGG - chr1_2:47509474-47509493 None:intergenic 45.0%
CAAGGCAAGTGGAGTAATGA+TGG + chr1_2:47509472-47509491 Msa0073660:CDS 45.0%
! ATGATGGAAAAAGCTTGGGC+TGG + chr1_2:47509488-47509507 Msa0073660:CDS 45.0%
ACTTATGTGAGCGTACGTAC+TGG + chr1_2:47509602-47509621 Msa0073660:intron 45.0%
ATTGTCTTTGGTGGGGATTG+AGG + chr1_2:47510164-47510183 Msa0073660:CDS 45.0%
!! GTGCTTTTTGCACTGCTCAT+AGG + chr1_2:47510368-47510387 Msa0073660:CDS 45.0%
ACCTTCAGTCGACCACTATA+CGG + chr1_2:47510636-47510655 Msa0073660:CDS 45.0%
TGGAAGAGTGGCGAATAAGA+AGG + chr1_2:47510660-47510679 Msa0073660:CDS 45.0%
CAGAAAGATGGATGCATCAC+AGG + chr1_2:47510690-47510709 Msa0073660:CDS 45.0%
GACGCCATGACCAATTTAGA+TGG + chr1_2:47510744-47510763 Msa0073660:CDS 45.0%
TTTAGATGGGTAGCTACTCG+TGG + chr1_2:47510758-47510777 Msa0073660:CDS 45.0%
AAACCAACTCTATGCACTCC+AGG + chr1_2:47511347-47511366 Msa0073660:CDS 45.0%
!! TGAAGAGCATTTCGTCGACA+GGG - chr1_2:47511397-47511416 None:intergenic 45.0%
!! ATGAAGAGCATTTCGTCGAC+AGG - chr1_2:47511398-47511417 None:intergenic 45.0%
GAAATGCTCTTCATCGTTCG+AGG + chr1_2:47511404-47511423 Msa0073660:CDS 45.0%
AAAACCAGTTCTACCACCGT+TGG - chr1_2:47511450-47511469 None:intergenic 45.0%
AACACCTGCAAAATAGGCTC+AGG + chr1_2:47511473-47511492 Msa0073660:CDS 45.0%
! GTGGTGAAGAGCTTTTACCA+TGG + chr1_2:47511504-47511523 Msa0073660:CDS 45.0%
AAATGCTTCGACTTCGGTGA+TGG - chr1_2:47511585-47511604 None:intergenic 45.0%
GAGTGCAAATGCTTCGACTT+CGG - chr1_2:47511591-47511610 None:intergenic 45.0%
!! GTTGTTTGCTATGTAACCGG+CGG - chr1_2:47511649-47511668 None:intergenic 45.0%
ATTCACATCAGTGGAGGACA+TGG + chr1_2:47511690-47511709 Msa0073660:CDS 45.0%
TTCACATCAGTGGAGGACAT+GGG + chr1_2:47511691-47511710 Msa0073660:CDS 45.0%
ATATTTCTCTGCACCTCTGC+AGG + chr1_2:47511838-47511857 Msa0073660:CDS 45.0%
! TTTTAGGCTAGGGTCAAGGA+TGG + chr1_2:47512161-47512180 Msa0073660:three_prime_UTR 45.0%
CTAGGGTCAAGGATGGAATT+AGG + chr1_2:47512168-47512187 Msa0073660:three_prime_UTR 45.0%
!!! TAATTAAAATATGAATTTTA+TGG + chr1_2:47509270-47509289 Msa0073660:intron 5.0%
GCTCCTTCATCTCGTGTTTC+TGG + chr1_2:47508867-47508886 Msa0073660:CDS 50.0%
CGACCAGAAACACGAGATGA+AGG - chr1_2:47508873-47508892 None:intergenic 50.0%
!! TCATCTCGTGTTTCTGGTCG+AGG + chr1_2:47508873-47508892 Msa0073660:CDS 50.0%
ACATGTGATGAAGCCCTTGG+AGG - chr1_2:47509037-47509056 None:intergenic 50.0%
TCCAAGGGCTTCATCACATG+TGG + chr1_2:47509036-47509055 Msa0073660:intron 50.0%
ACCACATGTGATGAAGCCCT+TGG - chr1_2:47509040-47509059 None:intergenic 50.0%
ATCAAGGCATGTAGTTCGCC+TGG + chr1_2:47509388-47509407 Msa0073660:CDS 50.0%
GGTGGGGATTGAGGAATCTA+AGG + chr1_2:47510173-47510192 Msa0073660:CDS 50.0%
!! GGCGTCGAACATTTTCCTTC+AGG - chr1_2:47510730-47510749 None:intergenic 50.0%
GTTCCTGGAGTGCATAGAGT+TGG - chr1_2:47511353-47511372 None:intergenic 50.0%
TCGCGAACTATGCAAGTTCC+TGG - chr1_2:47511368-47511387 None:intergenic 50.0%
GGAACTTGCATAGTTCGCGA+AGG + chr1_2:47511368-47511387 Msa0073660:CDS 50.0%
! GTCACCTGAGCCTATTTTGC+AGG - chr1_2:47511480-47511499 None:intergenic 50.0%
ATAGGCTCAGGTGACTTCTG+TGG + chr1_2:47511485-47511504 Msa0073660:CDS 50.0%
! ATGAAGGAAGCACAGCAGTC+GGG - chr1_2:47511544-47511563 None:intergenic 50.0%
! GATGAAGGAAGCACAGCAGT+CGG - chr1_2:47511545-47511564 None:intergenic 50.0%
!! CTCACTGTGCGAGTTGATGA+AGG - chr1_2:47511560-47511579 None:intergenic 50.0%
AGCATTTGCACTCATTGCCG+AGG + chr1_2:47511598-47511617 Msa0073660:CDS 50.0%
TTGTAGCAGCACAATTCCGC+CGG + chr1_2:47511630-47511649 Msa0073660:CDS 50.0%
TGCAGCACTACCACTTCCTC+AGG + chr1_2:47508965-47508984 Msa0073660:CDS 55.0%
GCCGTATAGTGGTCGACTGA+AGG - chr1_2:47510640-47510659 None:intergenic 55.0%
TCAGTCGACCACTATACGGC+TGG + chr1_2:47510640-47510659 Msa0073660:CDS 55.0%
CCACTCTTCCAGCCGTATAG+TGG - chr1_2:47510651-47510670 None:intergenic 55.0%
CCACTATACGGCTGGAAGAG+TGG + chr1_2:47510648-47510667 Msa0073660:CDS 55.0%
AGCTACTCGTGGAGTTGACG+AGG + chr1_2:47510769-47510788 Msa0073660:CDS 55.0%
GATTCTTGCACGACCAACGG+TGG + chr1_2:47511434-47511453 Msa0073660:CDS 55.0%
ACGACCAACGGTGGTAGAAC+TGG + chr1_2:47511443-47511462 Msa0073660:CDS 55.0%
! GATCCTTTTGGCACCTGCAG+AGG - chr1_2:47511854-47511873 None:intergenic 55.0%
GCAGCTCCCTCGTTACCTGA+AGG + chr1_2:47510712-47510731 Msa0073660:CDS 60.0%
GCACCTCTGCAGGTGCCAAA+AGG + chr1_2:47511848-47511867 Msa0073660:CDS 60.0%
AGCAGTCGGGCGAGGGTCTA+AGG - chr1_2:47511531-47511550 None:intergenic 65.0%
GAAGCACAGCAGTCGGGCGA+GGG - chr1_2:47511538-47511557 None:intergenic 65.0%
! GGGCGAGGGTCTAAGGCCCA+TGG - chr1_2:47511524-47511543 None:intergenic 70.0%
! GGAAGCACAGCAGTCGGGCG+AGG - chr1_2:47511539-47511558 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 47508142 47512219 47508142 ID=Msa0073660;Name=Msa0073660
chr1_2 mRNA 47508142 47512219 47508142 ID=Msa0073660-mRNA-1;Parent=Msa0073660;Name=Msa0073660-mRNA-1;_AED=0.09;_eAED=0.09;_QI=33|1|1|1|1|1|7|216|708
chr1_2 exon 47508142 47508203 47508142 ID=Msa0073660-mRNA-1:exon:14479;Parent=Msa0073660-mRNA-1
chr1_2 exon 47508458 47508986 47508458 ID=Msa0073660-mRNA-1:exon:14480;Parent=Msa0073660-mRNA-1
chr1_2 exon 47509338 47509550 47509338 ID=Msa0073660-mRNA-1:exon:14481;Parent=Msa0073660-mRNA-1
chr1_2 exon 47509902 47510194 47509902 ID=Msa0073660-mRNA-1:exon:14482;Parent=Msa0073660-mRNA-1
chr1_2 exon 47510289 47510400 47510289 ID=Msa0073660-mRNA-1:exon:14483;Parent=Msa0073660-mRNA-1
chr1_2 exon 47510632 47510868 47510632 ID=Msa0073660-mRNA-1:exon:14484;Parent=Msa0073660-mRNA-1
chr1_2 exon 47511290 47512219 47511290 ID=Msa0073660-mRNA-1:exon:14485;Parent=Msa0073660-mRNA-1
chr1_2 five_prime_UTR 47508142 47508174 47508142 ID=Msa0073660-mRNA-1:five_prime_utr;Parent=Msa0073660-mRNA-1
chr1_2 CDS 47508175 47508203 47508175 ID=Msa0073660-mRNA-1:cds;Parent=Msa0073660-mRNA-1
chr1_2 CDS 47508458 47508986 47508458 ID=Msa0073660-mRNA-1:cds;Parent=Msa0073660-mRNA-1
chr1_2 CDS 47509338 47509550 47509338 ID=Msa0073660-mRNA-1:cds;Parent=Msa0073660-mRNA-1
chr1_2 CDS 47509902 47510194 47509902 ID=Msa0073660-mRNA-1:cds;Parent=Msa0073660-mRNA-1
chr1_2 CDS 47510289 47510400 47510289 ID=Msa0073660-mRNA-1:cds;Parent=Msa0073660-mRNA-1
chr1_2 CDS 47510632 47510868 47510632 ID=Msa0073660-mRNA-1:cds;Parent=Msa0073660-mRNA-1
chr1_2 CDS 47511290 47512003 47511290 ID=Msa0073660-mRNA-1:cds;Parent=Msa0073660-mRNA-1
chr1_2 three_prime_UTR 47512004 47512219 47512004 ID=Msa0073660-mRNA-1:three_prime_utr;Parent=Msa0073660-mRNA-1
Gene Sequence

>Msa0073660

ATGGCTTCTGTTATATCAAGAGTCGTAAGGTTTCATGATGATCTTGAAAAAGAGAAATTACAAGAAGGTGAAGAAAGTCACATGGAAATGAGTGCATATGAGATGAGGAGTGAATACAAGCATGGAAAAGATGCAATAAACAAGCCATCATCAAATGGAAGAGGACTTTCAAGAGTTTTTTCTGAAGATTATGACGCAGGAGAGATTTTAGTATTCGATCCTAGAGGACCTAGAATAAATTTATGGAACAAAATATTCTTAGCAGCTTGTTTGATTTCATTGTTTGTGGATCCGCTTTTCTTTTACTTACCAGTTGCTAAGAAAGAAAAGTGTATTGATATGTCAATTGGTCTTGAAGTTTCACTTACTATAATTAGAACATTTGTTGATGCATTTTACATTATTCATATCTATATTAGGTTTCAAACTGCTTATATTGCTCCTTCATCTCGTGTTTCTGGTCGAGGAGAACTCATTATTGATTCCTCAAAGATTGCATCAAACTACATGAAAAAGGAATTTTGGTCTGATCTTGTTGCAGCACTACCACTTCCTCAGGTACTCATTTGGGCTGTAATTCCAAATATAAAAGGGTCAGAAATGATTGCATCAAGGCATGTAGTTCGCCTGGTGTCCATTTTCCAGTACTTATTGAGGTTGTATCTTATTTATCCTCTATCATCTAAGATAACCAAGGCAAGTGGAGTAATGATGGAAAAAGCTTGGGCTGGTGCAGCTTATTATTTAACACTCTATATGCTTGCAAGTCATGTTTTAGGATCAACTTGGTACCTGTTATCAATTGAAAGACAAGATGAATGTTGGAAGAAAGCATGTACACTTCAATATCCACATTGCCAATATCATTATCTTGATTGTCGAAGCTTAAGTGATCCAAATAGGAATGCTTGGCTTAAATCAAGCAATCTATCAGGTCTATGTGATCAGAACAGTCACTTCTTTCAGTTTGGAATTTTTTATGATGCTGTGACTTTGGAAATAACTAGCTCAAACTTCTTAACCAAGTATTATTATTGTCTTTGGTGGGGATTGAGGAATCTAAGCTCTTCAGGAGAGAATCTCTTAACAAGTACACATGTTGCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTCATAGGAAATATGCAAACGTACCTTCAGTCGACCACTATACGGCTGGAAGAGTGGCGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACAGGCAGCTCCCTCGTTACCTGAAGGAAAATGTTCGACGCCATGACCAATTTAGATGGGTAGCTACTCGTGGAGTTGACGAGGAAGCAATTCTCAGAGATCTTCCTGTTGATCTAAGACGTGATATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTACCACTATTTGATCAGATGGATGACAGGATGTTAGATGCAATATGTGAAAGGCTAAAACCAACTCTATGCACTCCAGGAACTTGCATAGTTCGCGAAGGTGACCCTGTCGACGAAATGCTCTTCATCGTTCGAGGACGTTTAGATTCTTGCACGACCAACGGTGGTAGAACTGGTTTTTTCAACACCTGCAAAATAGGCTCAGGTGACTTCTGTGGTGAAGAGCTTTTACCATGGGCCTTAGACCCTCGCCCGACTGCTGTGCTTCCTTCATCAACTCGCACAGTGAGAGCCATCACCGAAGTCGAAGCATTTGCACTCATTGCCGAGGATTTAAAGTTTGTAGCAGCACAATTCCGCCGGTTACATAGCAAACAACTGCGACAAACCTTTAGATTCTATTCACATCAGTGGAGGACATGGGCTGCATGTTTTATACAAGCAGCTTGGTTTCGGTATAAGAGAATGAAAGAGACAAATGAGGTTAAGGAAAAGGAGAATCTTATGATGATGTCAAATGTGAAATATTATGGAAATGATGATTCTCAATATTTCTCTGCACCTCTGCAGGTGCCAAAAGGATCAAGTTATTCAATGTATTCTGGAAAACTAGTAGGTAGTTTAAGGAGAGGAAGAAGCATGAGATATGGTTCTGAACTTGATATGCTTGGTACATTAAGGAAGCCTATTGAACCAGATTTTAATGATGATTAA
Protein sequence

>Msa0073660

MASVISRVVRFHDDLEKEKLQEGEESHMEMSAYEMRSEYKHGKDAINKPSSNGRGLSRVFSEDYDAGEILVFDPRGPRINLWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSIGLEVSLTIIRTFVDAFYIIHIYIRFQTAYIAPSSRVSGRGELIIDSSKIASNYMKKEFWSDLVAALPLPQVLIWAVIPNIKGSEMIASRHVVRLVSIFQYLLRLYLIYPLSSKITKASGVMMEKAWAGAAYYLTLYMLASHVLGSTWYLLSIERQDECWKKACTLQYPHCQYHYLDCRSLSDPNRNAWLKSSNLSGLCDQNSHFFQFGIFYDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCKIGSGDFCGEELLPWALDPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRGRSMRYGSELDMLGTLRKPIEPDFNDD*