Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082690 | EOA21654.1 | 86.702 | 188 | 8 | 1 | 1 | 188 | 1 | 171 | 3.30e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082690 | sp|O48920|ARF_VIGUN | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 3.90e-110 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082690 | R0GXM4 | 86.702 | 188 | 8 | 1 | 1 | 188 | 1 | 171 | 1.58e-110 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa1082690 | 0.804556 | 2.040977e-49 | -8.615850e-47 |
| Msa0031820 | Msa1082690 | 0.804466 | 2.131805e-49 | -8.615850e-47 |
| Msa0033880 | Msa1082690 | 0.818803 | 1.619719e-52 | -8.615850e-47 |
| Msa0037160 | Msa1082690 | 0.806217 | 9.156737e-50 | -8.615850e-47 |
| Msa0046760 | Msa1082690 | 0.827763 | 1.307208e-54 | -8.615850e-47 |
| Msa0081650 | Msa1082690 | 0.807287 | 5.442048e-50 | -8.615850e-47 |
| Msa0100800 | Msa1082690 | 0.805217 | 1.484736e-49 | -8.615850e-47 |
| Msa0118000 | Msa1082690 | 0.814063 | 1.864163e-51 | -8.615850e-47 |
| Msa0603670 | Msa1082690 | 0.818500 | 1.897764e-52 | -8.615850e-47 |
| Msa0619920 | Msa1082690 | 0.816617 | 5.042962e-52 | -8.615850e-47 |
| Msa0659990 | Msa1082690 | 0.813254 | 2.809215e-51 | -8.615850e-47 |
| Msa0705000 | Msa1082690 | 0.800222 | 1.594467e-48 | -8.615850e-47 |
| Msa0745200 | Msa1082690 | 0.822090 | 2.852333e-53 | -8.615850e-47 |
| Msa0819540 | Msa1082690 | 0.837690 | 4.479226e-57 | -8.615850e-47 |
| Msa0127850 | Msa1082690 | 0.819055 | 1.419667e-52 | -8.615850e-47 |
| Msa0165440 | Msa1082690 | 0.823804 | 1.136845e-53 | -8.615850e-47 |
| Msa0171850 | Msa1082690 | 0.814073 | 1.855218e-51 | -8.615850e-47 |
| Msa0174000 | Msa1082690 | 0.807764 | 4.309849e-50 | -8.615850e-47 |
| Msa0185350 | Msa1082690 | 0.801824 | 7.501900e-49 | -8.615850e-47 |
| Msa0208810 | Msa1082690 | 0.812288 | 4.571629e-51 | -8.615850e-47 |
| Msa0223230 | Msa1082690 | 0.810454 | 1.143379e-50 | -8.615850e-47 |
| Msa0428050 | Msa1082690 | 0.807827 | 4.179809e-50 | -8.615850e-47 |
| Msa0428240 | Msa1082690 | 0.800456 | 1.428802e-48 | -8.615850e-47 |
| Msa0980940 | Msa1082690 | 0.832472 | 9.270887e-56 | -8.615850e-47 |
| Msa1001350 | Msa1082690 | 0.813081 | 3.065436e-51 | -8.615850e-47 |
| Msa1025260 | Msa1082690 | 0.810581 | 1.073281e-50 | -8.615850e-47 |
| Msa1040840 | Msa1082690 | 0.901043 | 3.990634e-78 | -8.615850e-47 |
| Msa1041520 | Msa1082690 | 0.800662 | 1.297364e-48 | -8.615850e-47 |
| Msa1082690 | Msa1083750 | 0.804862 | 1.761754e-49 | -8.615850e-47 |
| Msa1082690 | Msa1109350 | 0.806313 | 8.739713e-50 | -8.615850e-47 |
| Msa1082690 | Msa1128660 | 0.804138 | 2.494302e-49 | -8.615850e-47 |
| Msa1082690 | Msa1145240 | 0.837448 | 5.166700e-57 | -8.615850e-47 |
| Msa1082690 | Msa1294960 | 0.816337 | 5.824107e-52 | -8.615850e-47 |
| Msa1082690 | Msa1346750 | 0.800908 | 1.155959e-48 | -8.615850e-47 |
| Msa1082690 | Msa1424780 | 0.808109 | 3.640235e-50 | -8.615850e-47 |
| Msa1082690 | Msa1435440 | 0.810314 | 1.225641e-50 | -8.615850e-47 |
| Msa0363810 | Msa1082690 | 0.805222 | 1.481157e-49 | -8.615850e-47 |
| Msa0545060 | Msa1082690 | 0.808998 | 2.350863e-50 | -8.615850e-47 |
| Msa0578090 | Msa1082690 | 0.805388 | 1.367614e-49 | -8.615850e-47 |
| Msa0593700 | Msa1082690 | 0.804948 | 1.690618e-49 | -8.615850e-47 |
| Msa0901450 | Msa1082690 | 0.813269 | 2.788615e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082690 | MtrunA17_Chr7g0270301 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 1.54e-111 | 315 |
| Msa1082690 | MtrunA17_Chr6g0450081 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 1.62e-111 | 315 |
| Msa1082690 | MtrunA17_Chr1g0194261 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 2.63e-111 | 315 |
| Msa1082690 | MtrunA17_Chr5g0413451 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 5.73e-111 | 314 |
| Msa1082690 | MtrunA17_Chr5g0413441 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 5.73e-111 | 314 |
| Msa1082690 | MtrunA17_Chr5g0401761 | 70.558 | 197 | 31 | 2 | 1 | 187 | 1 | 180 | 1.48e-95 | 275 |
| Msa1082690 | MtrunA17_Chr4g0072861 | 51.531 | 196 | 68 | 2 | 1 | 186 | 1 | 179 | 1.42e-65 | 199 |
| Msa1082690 | MtrunA17_Chr5g0395631 | 52.174 | 184 | 81 | 3 | 1 | 184 | 1 | 177 | 6.61e-62 | 190 |
| Msa1082690 | MtrunA17_Chr4g0039591 | 51.630 | 184 | 82 | 3 | 1 | 184 | 1 | 177 | 3.20e-61 | 188 |
| Msa1082690 | MtrunA17_Chr5g0395641 | 48.404 | 188 | 90 | 2 | 1 | 187 | 1 | 182 | 2.13e-60 | 186 |
| Msa1082690 | MtrunA17_Chr1g0188111 | 47.619 | 189 | 90 | 2 | 1 | 188 | 1 | 181 | 9.55e-56 | 174 |
| Msa1082690 | MtrunA17_Chr8g0373271 | 41.860 | 172 | 90 | 6 | 18 | 187 | 17 | 180 | 1.23e-34 | 120 |
| Msa1082690 | MtrunA17_Chr5g0395651 | 64.865 | 74 | 26 | 0 | 1 | 74 | 1 | 74 | 4.77e-30 | 105 |
| Msa1082690 | MtrunA17_Chr2g0287721 | 33.871 | 186 | 103 | 5 | 5 | 180 | 5 | 180 | 1.17e-24 | 95.5 |
| Msa1082690 | MtrunA17_Chr5g0434561 | 31.522 | 184 | 114 | 4 | 1 | 180 | 1 | 176 | 1.82e-19 | 81.3 |
| Msa1082690 | MtrunA17_Chr5g0401071 | 29.319 | 191 | 125 | 3 | 1 | 188 | 1 | 184 | 8.23e-19 | 79.7 |
| Msa1082690 | MtrunA17_Chr4g0012371 | 29.070 | 172 | 112 | 3 | 18 | 187 | 1 | 164 | 6.63e-16 | 71.6 |
| Msa1082690 | MtrunA17_Chr2g0294701 | 28.261 | 184 | 109 | 3 | 15 | 184 | 18 | 192 | 2.28e-13 | 65.5 |
| Msa1082690 | MtrunA17_Chr7g0271761 | 27.717 | 184 | 110 | 3 | 15 | 184 | 18 | 192 | 7.98e-13 | 63.9 |
| Msa1082690 | MtrunA17_Chr5g0395671 | 51.020 | 49 | 24 | 0 | 139 | 187 | 44 | 92 | 1.93e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082690 | AT1G10630.1 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 3.63e-111 | 315 |
| Msa1082690 | AT1G10630.2 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 3.63e-111 | 315 |
| Msa1082690 | AT5G14670.2 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 7.91e-111 | 314 |
| Msa1082690 | AT5G14670.3 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 7.91e-111 | 314 |
| Msa1082690 | AT2G47170.2 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 1.49e-110 | 313 |
| Msa1082690 | AT2G47170.1 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 1.49e-110 | 313 |
| Msa1082690 | AT2G47170.3 | 82.828 | 198 | 7 | 2 | 1 | 188 | 1 | 181 | 1.49e-110 | 313 |
| Msa1082690 | AT1G23490.1 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa1082690 | AT1G70490.2 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa1082690 | AT1G70490.7 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa1082690 | AT1G70490.4 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa1082690 | AT1G70490.3 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa1082690 | AT1G70490.1 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa1082690 | AT1G70490.6 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa1082690 | AT1G70490.5 | 82.323 | 198 | 8 | 2 | 1 | 188 | 1 | 181 | 3.18e-110 | 312 |
| Msa1082690 | AT5G14670.1 | 81.818 | 198 | 9 | 2 | 1 | 188 | 1 | 181 | 8.84e-110 | 311 |
| Msa1082690 | AT3G62290.3 | 81.818 | 198 | 9 | 2 | 1 | 188 | 1 | 181 | 2.08e-109 | 310 |
| Msa1082690 | AT3G62290.1 | 81.818 | 198 | 9 | 2 | 1 | 188 | 1 | 181 | 2.08e-109 | 310 |
| Msa1082690 | AT3G62290.2 | 81.818 | 198 | 9 | 2 | 1 | 188 | 1 | 181 | 2.08e-109 | 310 |
| Msa1082690 | AT2G15310.1 | 54.040 | 198 | 64 | 2 | 1 | 188 | 1 | 181 | 1.82e-68 | 207 |
| Msa1082690 | AT2G24765.1 | 50.510 | 196 | 70 | 2 | 1 | 186 | 1 | 179 | 1.20e-65 | 199 |
| Msa1082690 | AT5G17060.2 | 50.000 | 184 | 85 | 3 | 1 | 184 | 1 | 177 | 3.09e-60 | 186 |
| Msa1082690 | AT5G17060.1 | 50.000 | 184 | 85 | 3 | 1 | 184 | 1 | 177 | 3.09e-60 | 186 |
| Msa1082690 | AT3G03120.1 | 50.543 | 184 | 84 | 3 | 1 | 184 | 1 | 177 | 1.41e-59 | 184 |
| Msa1082690 | AT3G22950.1 | 48.677 | 189 | 88 | 2 | 1 | 188 | 1 | 181 | 1.59e-58 | 181 |
| Msa1082690 | AT3G22950.2 | 48.677 | 189 | 88 | 2 | 1 | 188 | 1 | 181 | 1.59e-58 | 181 |
| Msa1082690 | AT1G02430.1 | 44.615 | 195 | 87 | 8 | 1 | 183 | 1 | 186 | 3.08e-45 | 148 |
| Msa1082690 | AT1G02440.1 | 40.838 | 191 | 100 | 6 | 1 | 183 | 1 | 186 | 1.55e-41 | 139 |
| Msa1082690 | AT2G24765.2 | 48.966 | 145 | 47 | 2 | 1 | 135 | 1 | 128 | 2.19e-41 | 136 |
| Msa1082690 | AT3G03120.2 | 49.635 | 137 | 62 | 3 | 1 | 137 | 1 | 130 | 4.00e-39 | 130 |
| Msa1082690 | AT2G18390.1 | 41.860 | 172 | 90 | 6 | 18 | 187 | 17 | 180 | 5.65e-34 | 119 |
| Msa1082690 | AT1G02430.2 | 42.262 | 168 | 80 | 7 | 1 | 160 | 1 | 159 | 1.09e-33 | 117 |
| Msa1082690 | AT1G02440.2 | 32.919 | 161 | 65 | 4 | 1 | 160 | 1 | 119 | 1.54e-24 | 93.2 |
| Msa1082690 | AT5G52210.1 | 32.597 | 181 | 106 | 3 | 8 | 180 | 8 | 180 | 3.88e-23 | 92.0 |
| Msa1082690 | AT5G52210.2 | 32.597 | 181 | 106 | 3 | 8 | 180 | 8 | 180 | 3.88e-23 | 92.0 |
| Msa1082690 | AT3G49870.1 | 30.890 | 191 | 120 | 4 | 1 | 187 | 1 | 183 | 8.96e-21 | 85.1 |
| Msa1082690 | AT5G67560.1 | 30.588 | 170 | 110 | 2 | 12 | 180 | 14 | 176 | 2.68e-19 | 81.3 |
| Msa1082690 | AT5G37680.1 | 31.522 | 184 | 114 | 4 | 1 | 180 | 1 | 176 | 3.63e-19 | 80.9 |
| Msa1082690 | AT3G49870.2 | 29.651 | 172 | 111 | 3 | 18 | 187 | 1 | 164 | 3.15e-17 | 75.5 |
| Msa1082690 | AT3G49860.1 | 29.310 | 174 | 113 | 3 | 16 | 187 | 10 | 175 | 8.07e-17 | 74.7 |
| Msa1082690 | AT1G09180.1 | 30.729 | 192 | 98 | 5 | 13 | 184 | 16 | 192 | 2.64e-15 | 70.9 |
| Msa1082690 | AT3G62560.1 | 28.261 | 184 | 109 | 3 | 15 | 184 | 18 | 192 | 4.99e-13 | 65.1 |
| Msa1082690 | AT5G37680.2 | 30.147 | 136 | 86 | 2 | 46 | 180 | 2 | 129 | 6.08e-13 | 63.5 |
| Msa1082690 | AT4G02080.1 | 27.717 | 184 | 110 | 3 | 15 | 184 | 18 | 192 | 1.64e-12 | 63.5 |
| Msa1082690 | AT1G56330.1 | 28.261 | 184 | 109 | 3 | 15 | 184 | 18 | 192 | 1.69e-12 | 63.5 |
Find 67 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAATAATAGTTGAAAA+TGG | 0.181951 | 7_2:-82778313 | Msa1082690:intron |
| AATTGGAAAATGGAGGAAAT+TGG | 0.229441 | 7_2:-82776855 | Msa1082690:CDS |
| AGGATTCAAATTGAGAAGTA+TGG | 0.246836 | 7_2:-82776901 | Msa1082690:CDS |
| TGATTTCAGATGCTCGGATA+TGG | 0.314023 | 7_2:-82775032 | Msa1082690:three_prime_UTR |
| GACAGGATAAAATTCTAAAC+AGG | 0.330813 | 7_2:+82775005 | None:intergenic |
| TTGTAGAACTGTCAAGTGTT+AGG | 0.337074 | 7_2:-82776921 | Msa1082690:intron |
| TTTCCTTCTTCGCAAATAAC+CGG | 0.361975 | 7_2:+82778265 | None:intergenic |
| AATTGACAATACAGATCAAT+AGG | 0.380708 | 7_2:+82774891 | None:intergenic |
| GAAGGAAATGCGTATACTTA+TGG | 0.381963 | 7_2:-82778250 | Msa1082690:CDS |
| TCAGCAGCATTCATAGCATT+TGG | 0.385055 | 7_2:+82775429 | None:intergenic |
| CAGCCGGTTATTTGCGAAGA+AGG | 0.398980 | 7_2:-82778268 | Msa1082690:CDS |
| ATTGGAAAATGGAGGAAATT+GGG | 0.415188 | 7_2:-82776854 | Msa1082690:intron |
| CAGAGGTAGCACATGTGCTC+TGG | 0.443544 | 7_2:+82775263 | None:intergenic |
| GGATGTTGGTGGCCAGGATA+AGG | 0.450107 | 7_2:-82777691 | Msa1082690:intron |
| ATTCACTTCGTCAGCGTCAC+TGG | 0.458451 | 7_2:-82775383 | Msa1082690:intron |
| CGATTATGATTTCAGATGCT+CGG | 0.465999 | 7_2:-82775038 | Msa1082690:three_prime_UTR |
| TCAGAATAATAGTTGAAAAT+GGG | 0.467560 | 7_2:-82778312 | Msa1082690:intron |
| AGCTTTACTGTGTGGGATGT+TGG | 0.474274 | 7_2:-82777705 | Msa1082690:CDS |
| ATCAGATCTCTCTTCGTGGT+TGG | 0.490939 | 7_2:+82778494 | None:intergenic |
| CTCAAACAACATTGCAAGCA+AGG | 0.495880 | 7_2:-82775209 | Msa1082690:intron |
| ATTCTCTATAAGCTCAAGCT+TGG | 0.498460 | 7_2:-82778198 | Msa1082690:CDS |
| CTTAGTTATTCCTTTAGTCA+AGG | 0.499581 | 7_2:-82775087 | Msa1082690:exon |
| TGAAACAATACATGTTAGAC+AGG | 0.507624 | 7_2:+82774988 | None:intergenic |
| GTCACCACCATTCCCACCAT+TGG | 0.507944 | 7_2:-82778168 | Msa1082690:intron |
| TTAGTTATTCCTTTAGTCAA+GGG | 0.508143 | 7_2:-82775086 | Msa1082690:exon |
| ATTGTAAAACTTACCAATGG+TGG | 0.508835 | 7_2:+82778155 | None:intergenic |
| TTCATGCAGCCCTTGACTAA+AGG | 0.510185 | 7_2:+82775077 | None:intergenic |
| AAGCTAGGGACGAGCTGCAC+AGG | 0.511385 | 7_2:-82775620 | Msa1082690:CDS |
| TGTGTGGGATGTTGGTGGCC+AGG | 0.516311 | 7_2:-82777697 | Msa1082690:CDS |
| GGATTCAAATTGAGAAGTAT+GGG | 0.521526 | 7_2:-82776900 | Msa1082690:CDS |
| AATATAGAAATACCTTATCC+TGG | 0.523424 | 7_2:+82777679 | None:intergenic |
| CAGAGCACATGTGCTACCTC+TGG | 0.523931 | 7_2:-82775262 | Msa1082690:CDS |
| AAGCTTGAGCTTATAGAGAA+TGG | 0.532263 | 7_2:+82778200 | None:intergenic |
| GAACATTAGCTTTACTGTGT+GGG | 0.534133 | 7_2:-82777712 | Msa1082690:CDS |
| TATACATAATATAAAAGCTA+TGG | 0.535527 | 7_2:-82774845 | Msa1082690:three_prime_UTR |
| TTTACTGTGTGGGATGTTGG+TGG | 0.540094 | 7_2:-82777702 | Msa1082690:CDS |
| AAATAACCGGCTGAATAGCT+TGG | 0.543563 | 7_2:+82778278 | None:intergenic |
| TTACCTTTGAGAATTGAGAA+TGG | 0.549217 | 7_2:+82778450 | None:intergenic |
| ATTTGGTGTAGGGTTTAATG+TGG | 0.553247 | 7_2:-82777751 | Msa1082690:intron |
| GCTGAAATAACTGATAAGCT+AGG | 0.555145 | 7_2:-82775411 | Msa1082690:CDS |
| ATGGGCCCAAAGAGTGATGT+GGG | 0.560859 | 7_2:-82776882 | Msa1082690:CDS |
| GGAGATCAGATCTCTCTTCG+TGG | 0.561416 | 7_2:+82778490 | None:intergenic |
| AGATCGTGTTGTTGAAGCTA+GGG | 0.564599 | 7_2:-82775634 | Msa1082690:CDS |
| AAACTTACCAATGGTGGGAA+TGG | 0.569667 | 7_2:+82778161 | None:intergenic |
| TAGCTTCAACAACACGATCT+CGG | 0.576560 | 7_2:+82775637 | None:intergenic |
| CATTCACCAAGCTATTCAGC+CGG | 0.576922 | 7_2:-82778284 | Msa1082690:CDS |
| GAGATCGTGTTGTTGAAGCT+AGG | 0.579112 | 7_2:-82775635 | Msa1082690:CDS |
| ATGGTCGGTCTCGATGCCGC+TGG | 0.579718 | 7_2:-82778231 | Msa1082690:CDS |
| TTGTAAAACTTACCAATGGT+GGG | 0.580371 | 7_2:+82778156 | None:intergenic |
| TCTGGTGAAGGACTTTATGA+AGG | 0.585343 | 7_2:-82775244 | Msa1082690:CDS |
| GAAAATGAACAAATGTACCT+AGG | 0.585507 | 7_2:-82774956 | Msa1082690:three_prime_UTR |
| ATACCATTCTCAATTCTCAA+AGG | 0.593682 | 7_2:-82778453 | Msa1082690:intron |
| ACATGTGCTACCTCTGGTGA+AGG | 0.597179 | 7_2:-82775256 | Msa1082690:CDS |
| GACTTTATGAAGGACTAGAC+TGG | 0.599016 | 7_2:-82775234 | Msa1082690:CDS |
| CTTACCAATGGTGGGAATGG+TGG | 0.612027 | 7_2:+82778164 | None:intergenic |
| TATGCAATTGTATTAAACCT+AGG | 0.615788 | 7_2:+82774939 | None:intergenic |
| TATGGGCCCAAAGAGTGATG+TGG | 0.622666 | 7_2:-82776883 | Msa1082690:CDS |
| AGGGTTTAATGTGGAAACTG+TGG | 0.625050 | 7_2:-82777742 | Msa1082690:CDS |
| TTCATAAAGTCCTTCACCAG+AGG | 0.636014 | 7_2:+82775246 | None:intergenic |
| AGAACATTAGCTTTACTGTG+TGG | 0.640151 | 7_2:-82777713 | Msa1082690:CDS |
| CTTGAGCTTATAGAGAATGG+TGG | 0.640806 | 7_2:+82778203 | None:intergenic |
| GAAATGCGTATACTTATGGT+CGG | 0.647571 | 7_2:-82778246 | Msa1082690:CDS |
| GGGCCCAAAGAGTGATGTGG+GGG | 0.655758 | 7_2:-82776880 | Msa1082690:CDS |
| GAGAATGGTGGTCTTACCAG+CGG | 0.666289 | 7_2:+82778215 | None:intergenic |
| ACAGGATAAAATTCTAAACA+GGG | 0.688920 | 7_2:+82775006 | None:intergenic |
| TGGGCCCAAAGAGTGATGTG+GGG | 0.700653 | 7_2:-82776881 | Msa1082690:CDS |
| GCTGCACAGGATGTTAAACG+AGG | 0.784396 | 7_2:-82775607 | Msa1082690:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAATAAAAATAAGATAA+CGG | - | chr7_2:82774828-82774847 | Msa1082690:three_prime_UTR | 10.0% |
| !!! | ATTTTACAAAAATTCGTATA+TGG | + | chr7_2:82774815-82774834 | None:intergenic | 15.0% |
| !! | GATTTACAAATTATGTTATA+AGG | - | chr7_2:82776624-82776643 | Msa1082690:intron | 15.0% |
| !! | ACAGATTATTAACAAATATT+AGG | + | chr7_2:82777194-82777213 | None:intergenic | 15.0% |
| !!! | ATTAAATTTTAATGTGCATT+GGG | + | chr7_2:82777528-82777547 | None:intergenic | 15.0% |
| !! | AACTCAAAGATAAAAATATA+TGG | + | chr7_2:82777674-82777693 | None:intergenic | 15.0% |
| !! | TATACATAATATAAAAGCTA+TGG | - | chr7_2:82778600-82778619 | Msa1082690:intron | 15.0% |
| !! | ACATCAATTAGAATTGAAAT+TGG | + | chr7_2:82775095-82775114 | None:intergenic | 20.0% |
| !! | TTTCAATTCTAATTGATGTT+TGG | - | chr7_2:82775096-82775115 | Msa1082690:intron | 20.0% |
| !! | TTCAGAATAATAGTTGAAAA+TGG | - | chr7_2:82775132-82775151 | Msa1082690:intron | 20.0% |
| !! | TCAGAATAATAGTTGAAAAT+GGG | - | chr7_2:82775133-82775152 | Msa1082690:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | + | chr7_2:82775378-82775397 | None:intergenic | 20.0% |
| !!! | TTTTGATGATATAGATGATT+TGG | - | chr7_2:82775677-82775696 | Msa1082690:intron | 20.0% |
| !! | ATTATAAAACTAGTTACAGT+AGG | - | chr7_2:82775974-82775993 | Msa1082690:intron | 20.0% |
| !! | TTATACTAAATAGCATATCA+CGG | + | chr7_2:82776129-82776148 | None:intergenic | 20.0% |
| !! | GAATGTATTATTGATAGAAA+AGG | + | chr7_2:82776851-82776870 | None:intergenic | 20.0% |
| !!! | TCATTGTTTTTATTTTTGCT+TGG | - | chr7_2:82777127-82777146 | Msa1082690:intron | 20.0% |
| !! | TCAAAACAAAATATGTATCT+TGG | + | chr7_2:82777279-82777298 | None:intergenic | 20.0% |
| !!! | GATTAAATTTTAATGTGCAT+TGG | + | chr7_2:82777529-82777548 | None:intergenic | 20.0% |
| !! | AGATAAAAATATATGGTTAG+AGG | + | chr7_2:82777667-82777686 | None:intergenic | 20.0% |
| !! | ATTACTTTCAAAATACACAA+GGG | - | chr7_2:82777759-82777778 | Msa1082690:intron | 20.0% |
| !!! | TATTTTGTTATTTGTTTTGC+AGG | - | chr7_2:82778335-82778354 | Msa1082690:intron | 20.0% |
| ! | AAATTCGTATATGGTTAACA+TGG | + | chr7_2:82774806-82774825 | None:intergenic | 25.0% |
| !!! | AATTGAGAATGGTATTTTTG+TGG | + | chr7_2:82774987-82775006 | None:intergenic | 25.0% |
| ! | CAATTCCTTTCTATAAACAA+TGG | - | chr7_2:82775309-82775328 | Msa1082690:intron | 25.0% |
| ! | CATTACCATTGTTTATAGAA+AGG | + | chr7_2:82775317-82775336 | None:intergenic | 25.0% |
| ! | GTAATGATAATTATGAAGCA+CGG | - | chr7_2:82775331-82775350 | Msa1082690:intron | 25.0% |
| ! | AATATAGAAATACCTTATCC+TGG | + | chr7_2:82775769-82775788 | None:intergenic | 25.0% |
| !! | CTATATTTGTGTGTATGTTT+TGG | - | chr7_2:82775782-82775801 | Msa1082690:intron | 25.0% |
| !! | TGATTTTATGATATGACGAT+TGG | - | chr7_2:82775854-82775873 | Msa1082690:intron | 25.0% |
| !!! | GCTACTCTGTTTTTATTTAT+GGG | - | chr7_2:82775891-82775910 | Msa1082690:intron | 25.0% |
| ! | AACCATTGTTCTGTTATAAA+AGG | + | chr7_2:82776038-82776057 | None:intergenic | 25.0% |
| ! | TCAAATATTAGAAGCTATAG+TGG | - | chr7_2:82776156-82776175 | Msa1082690:intron | 25.0% |
| ! | TTATACCAAATAGCATATCA+CGG | + | chr7_2:82776234-82776253 | None:intergenic | 25.0% |
| ! | TCAAATATTAGAAGCTATAG+TGG | - | chr7_2:82776156-82776175 | Msa1082690:intron | 25.0% |
| ! | AAATAGGATGATGATTCAAT+GGG | + | chr7_2:82776481-82776500 | None:intergenic | 25.0% |
| ! | AAATGAGTGAAATGACAAAT+AGG | + | chr7_2:82776497-82776516 | None:intergenic | 25.0% |
| ! | AAAAGAGATAAATCTCTCTT+TGG | + | chr7_2:82776708-82776727 | None:intergenic | 25.0% |
| !!! | TTCGCTTGTTATCTTAATTT+TGG | - | chr7_2:82776868-82776887 | Msa1082690:CDS | 25.0% |
| !! | TATTAGTTTCATTCCTATCT+GGG | - | chr7_2:82776929-82776948 | Msa1082690:intron | 25.0% |
| !! | ATTTAGATTTTATCCCAGAT+AGG | + | chr7_2:82776945-82776964 | None:intergenic | 25.0% |
| ! | ATGTTGTGAAACAATCATTA+AGG | - | chr7_2:82777014-82777033 | Msa1082690:intron | 25.0% |
| ! | GTTCTATCGTAAACTATAAT+TGG | + | chr7_2:82777042-82777061 | None:intergenic | 25.0% |
| ! | TAGTTTACGATAGAACATTA+TGG | - | chr7_2:82777046-82777065 | Msa1082690:intron | 25.0% |
| !!! | CACATGACTTGTTAAAATTA+TGG | - | chr7_2:82777485-82777504 | Msa1082690:intron | 25.0% |
| ! | ATCCTAAACCAATTATACAT+AGG | - | chr7_2:82777546-82777565 | Msa1082690:intron | 25.0% |
| ! | ACTCTTATGTTTATGAATGT+TGG | - | chr7_2:82777577-82777596 | Msa1082690:intron | 25.0% |
| !! | TAATAAGAAAAGCATATCGA+TGG | + | chr7_2:82777719-82777738 | None:intergenic | 25.0% |
| ! | CATTACTTTCAAAATACACA+AGG | - | chr7_2:82777758-82777777 | Msa1082690:intron | 25.0% |
| ! | AATGAATGAATGTGAGAATT+TGG | - | chr7_2:82777878-82777897 | Msa1082690:intron | 25.0% |
| ! | TCTATGGTTATAATATTGTC+AGG | - | chr7_2:82777943-82777962 | Msa1082690:intron | 25.0% |
| !! | CTAAATTATGTCAAACCTTT+TGG | - | chr7_2:82778089-82778108 | Msa1082690:intron | 25.0% |
| ! | AACTCTGCAATTTAAATTAC+AGG | - | chr7_2:82778284-82778303 | Msa1082690:CDS | 25.0% |
| ! | TTAGTTATTCCTTTAGTCAA+GGG | - | chr7_2:82778359-82778378 | Msa1082690:intron | 25.0% |
| ! | ACAGGATAAAATTCTAAACA+GGG | + | chr7_2:82778442-82778461 | None:intergenic | 25.0% |
| ! | TATGCAATTGTATTAAACCT+AGG | + | chr7_2:82778509-82778528 | None:intergenic | 25.0% |
| ! | AATTGACAATACAGATCAAT+AGG | + | chr7_2:82778557-82778576 | None:intergenic | 25.0% |
| !! | ATGGTATTTTTGTGGTGAAA+TGG | + | chr7_2:82774979-82774998 | None:intergenic | 30.0% |
| ATACCATTCTCAATTCTCAA+AGG | - | chr7_2:82774992-82775011 | Msa1082690:three_prime_UTR | 30.0% | |
| ! | TTACCTTTGAGAATTGAGAA+TGG | + | chr7_2:82774998-82775017 | None:intergenic | 30.0% |
| TGATATAGATCGGTGAAATT+GGG | + | chr7_2:82775044-82775063 | None:intergenic | 30.0% | |
| TCGTGAATTGTGATATAGAT+CGG | + | chr7_2:82775054-82775073 | None:intergenic | 30.0% | |
| TTGTAAAACTTACCAATGGT+GGG | + | chr7_2:82775292-82775311 | None:intergenic | 30.0% | |
| ATTGTAAAACTTACCAATGG+TGG | + | chr7_2:82775293-82775312 | None:intergenic | 30.0% | |
| GGAATTGTAAAACTTACCAA+TGG | + | chr7_2:82775296-82775315 | None:intergenic | 30.0% | |
| TTTGCTTATAATAGTGACTG+GGG | + | chr7_2:82775513-82775532 | None:intergenic | 30.0% | |
| CTTTGCTTATAATAGTGACT+GGG | + | chr7_2:82775514-82775533 | None:intergenic | 30.0% | |
| TCTTTGCTTATAATAGTGAC+TGG | + | chr7_2:82775515-82775534 | None:intergenic | 30.0% | |
| AAACCAGATACAATCTGAAA+AGG | - | chr7_2:82775590-82775609 | Msa1082690:intron | 30.0% | |
| AACCAGATACAATCTGAAAA+GGG | - | chr7_2:82775591-82775610 | Msa1082690:intron | 30.0% | |
| !!! | CAGAGAGAGTATTTTATCAA+GGG | - | chr7_2:82775636-82775655 | Msa1082690:CDS | 30.0% |
| !! | TGATATAGATGATTTGGTGT+AGG | - | chr7_2:82775683-82775702 | Msa1082690:intron | 30.0% |
| !! | GATATAGATGATTTGGTGTA+GGG | - | chr7_2:82775684-82775703 | Msa1082690:intron | 30.0% |
| ! | ATATGACGATTGGTTGAAAT+TGG | - | chr7_2:82775864-82775883 | Msa1082690:intron | 30.0% |
| !!! | GGCTACTCTGTTTTTATTTA+TGG | - | chr7_2:82775890-82775909 | Msa1082690:intron | 30.0% |
| TAGAGGTGAAATGAAAGATA+AGG | - | chr7_2:82775924-82775943 | Msa1082690:intron | 30.0% | |
| CATTGTTCTGTTATAAAAGG+TGG | + | chr7_2:82776035-82776054 | None:intergenic | 30.0% | |
| ! | CACCTTTTATAACAGAACAA+TGG | - | chr7_2:82776033-82776052 | Msa1082690:intron | 30.0% |
| CAAATAGGATGATGATTCAA+TGG | + | chr7_2:82776482-82776501 | None:intergenic | 30.0% | |
| AGGATTCAAATTGAGAAGTA+TGG | - | chr7_2:82776544-82776563 | Msa1082690:intron | 30.0% | |
| ! | GGATTCAAATTGAGAAGTAT+GGG | - | chr7_2:82776545-82776564 | Msa1082690:intron | 30.0% |
| AATTGGAAAATGGAGGAAAT+TGG | - | chr7_2:82776590-82776609 | Msa1082690:intron | 30.0% | |
| ATTGGAAAATGGAGGAAATT+GGG | - | chr7_2:82776591-82776610 | Msa1082690:intron | 30.0% | |
| ! | CTTTTCTGTTAGAACTGTAA+AGG | - | chr7_2:82776678-82776697 | Msa1082690:intron | 30.0% |
| ! | GAGAGATTTATCTCTTTTTG+AGG | - | chr7_2:82776710-82776729 | Msa1082690:intron | 30.0% |
| TAGGAATGAAACTAATAGCA+AGG | + | chr7_2:82776926-82776945 | None:intergenic | 30.0% | |
| ! | CTATTAGTTTCATTCCTATC+TGG | - | chr7_2:82776928-82776947 | Msa1082690:intron | 30.0% |
| !!! | ATCCCAAAATCGTTAGTTTT+AGG | - | chr7_2:82776963-82776982 | Msa1082690:intron | 30.0% |
| ! | AGCCTAAAACTAACGATTTT+GGG | + | chr7_2:82776968-82776987 | None:intergenic | 30.0% |
| TAGAACATTATGGCGTAATT+TGG | - | chr7_2:82777056-82777075 | Msa1082690:intron | 30.0% | |
| AATCATTATCCAACTAAGTG+GGG | + | chr7_2:82777095-82777114 | None:intergenic | 30.0% | |
| CAATCATTATCCAACTAAGT+GGG | + | chr7_2:82777096-82777115 | None:intergenic | 30.0% | |
| TTAGTTGGATAATGATTGGT+TGG | - | chr7_2:82777098-82777117 | Msa1082690:intron | 30.0% | |
| CTAGTAAATTCTAGCATGTT+TGG | + | chr7_2:82777219-82777238 | None:intergenic | 30.0% | |
| CAAACATGCTAGAATTTACT+AGG | - | chr7_2:82777217-82777236 | Msa1082690:intron | 30.0% | |
| TAGATCAAAACTAAGCACTA+TGG | + | chr7_2:82777380-82777399 | None:intergenic | 30.0% | |
| AGTGATTGTAGTGTCAATTA+AGG | - | chr7_2:82777407-82777426 | Msa1082690:intron | 30.0% | |
| ! | TGCCTATGTATAATTGGTTT+AGG | + | chr7_2:82777551-82777570 | None:intergenic | 30.0% |
| AGAAGATGCCTATGTATAAT+TGG | + | chr7_2:82777557-82777576 | None:intergenic | 30.0% | |
| TTATGTTTATGAATGTTGGC+TGG | - | chr7_2:82777581-82777600 | Msa1082690:intron | 30.0% | |
| TGAAAGTAATGTCTCCATAA+AGG | + | chr7_2:82777749-82777768 | None:intergenic | 30.0% | |
| ATTCTCACATTCATTCATTG+AGG | + | chr7_2:82777877-82777896 | None:intergenic | 30.0% | |
| CAATCAGAAAATCAAGGTAT+AGG | + | chr7_2:82777920-82777939 | None:intergenic | 30.0% | |
| AGAAAGCAATCAGAAAATCA+AGG | + | chr7_2:82777926-82777945 | None:intergenic | 30.0% | |
| ! | GATTTTCTGATTGCTTTCTA+TGG | - | chr7_2:82777927-82777946 | Msa1082690:intron | 30.0% |
| ATAGAACAAGTAGATGAGAA+TGG | + | chr7_2:82778148-82778167 | None:intergenic | 30.0% | |
| CTTAGTTATTCCTTTAGTCA+AGG | - | chr7_2:82778358-82778377 | Msa1082690:intron | 30.0% | |
| GACAGGATAAAATTCTAAAC+AGG | + | chr7_2:82778443-82778462 | None:intergenic | 30.0% | |
| TGAAACAATACATGTTAGAC+AGG | + | chr7_2:82778460-82778479 | None:intergenic | 30.0% | |
| GAAAATGAACAAATGTACCT+AGG | - | chr7_2:82778489-82778508 | Msa1082690:five_prime_UTR | 30.0% | |
| GTGATATAGATCGGTGAAAT+TGG | + | chr7_2:82775045-82775064 | None:intergenic | 35.0% | |
| TTTCCTTCTTCGCAAATAAC+CGG | + | chr7_2:82775183-82775202 | None:intergenic | 35.0% | |
| GAAGGAAATGCGTATACTTA+TGG | - | chr7_2:82775195-82775214 | Msa1082690:intron | 35.0% | |
| GAAATGCGTATACTTATGGT+CGG | - | chr7_2:82775199-82775218 | Msa1082690:intron | 35.0% | |
| AAGCTTGAGCTTATAGAGAA+TGG | + | chr7_2:82775248-82775267 | None:intergenic | 35.0% | |
| ATTCTCTATAAGCTCAAGCT+TGG | - | chr7_2:82775247-82775266 | Msa1082690:CDS | 35.0% | |
| TGATAATTATGAAGCACGGA+TGG | - | chr7_2:82775335-82775354 | Msa1082690:intron | 35.0% | |
| CACGGATGGACAATTATATA+CGG | - | chr7_2:82775349-82775368 | Msa1082690:intron | 35.0% | |
| TTGCTTATAATAGTGACTGG+GGG | + | chr7_2:82775512-82775531 | None:intergenic | 35.0% | |
| ! | TTCCCTTTTCAGATTGTATC+TGG | + | chr7_2:82775596-82775615 | None:intergenic | 35.0% |
| CCTTGATAAAATACTCTCTC+TGG | + | chr7_2:82775638-82775657 | None:intergenic | 35.0% | |
| !!! | CCAGAGAGAGTATTTTATCA+AGG | - | chr7_2:82775635-82775654 | Msa1082690:CDS | 35.0% |
| !! | ATTTGGTGTAGGGTTTAATG+TGG | - | chr7_2:82775694-82775713 | Msa1082690:intron | 35.0% |
| !! | AGAACATTAGCTTTACTGTG+TGG | - | chr7_2:82775732-82775751 | Msa1082690:intron | 35.0% |
| !! | GAACATTAGCTTTACTGTGT+GGG | - | chr7_2:82775733-82775752 | Msa1082690:intron | 35.0% |
| ! | ACGATTGGTTGAAATTGGTA+TGG | - | chr7_2:82775869-82775888 | Msa1082690:intron | 35.0% |
| !! | GTTTTAAATAGCAGCTAGAG+TGG | - | chr7_2:82776055-82776074 | Msa1082690:intron | 35.0% |
| TTGTTCCGTGATATGCTATT+TGG | - | chr7_2:82776121-82776140 | Msa1082690:intron | 35.0% | |
| ATGCAAGGGTTATCCAAAAT+AGG | + | chr7_2:82776441-82776460 | None:intergenic | 35.0% | |
| AATGTCTGAGAGTAATGCAA+GGG | + | chr7_2:82776455-82776474 | None:intergenic | 35.0% | |
| TTGTAGAACTGTCAAGTGTT+AGG | - | chr7_2:82776524-82776543 | Msa1082690:intron | 35.0% | |
| TCTGTTAGAACTGTAAAGGT+TGG | - | chr7_2:82776682-82776701 | Msa1082690:intron | 35.0% | |
| !! | TTGGTTGTTGTTGTTGTTTG+AGG | - | chr7_2:82776778-82776797 | Msa1082690:intron | 35.0% |
| TTTCCTATCATCAAGAGACT+TGG | - | chr7_2:82776891-82776910 | Msa1082690:CDS | 35.0% | |
| TTCCTATCATCAAGAGACTT+GGG | - | chr7_2:82776892-82776911 | Msa1082690:CDS | 35.0% | |
| ! | CAGCCTAAAACTAACGATTT+TGG | + | chr7_2:82776969-82776988 | None:intergenic | 35.0% |
| CCAATCATTATCCAACTAAG+TGG | + | chr7_2:82777097-82777116 | None:intergenic | 35.0% | |
| CCACTTAGTTGGATAATGAT+TGG | - | chr7_2:82777094-82777113 | Msa1082690:intron | 35.0% | |
| GCTAGAATTTACTAGGTAGT+CGG | - | chr7_2:82777224-82777243 | Msa1082690:intron | 35.0% | |
| !! | GAATTTGAACCAAGAGTGTT+TGG | - | chr7_2:82777440-82777459 | Msa1082690:intron | 35.0% |
| TAAAAACTGCCAAACACTCT+TGG | + | chr7_2:82777452-82777471 | None:intergenic | 35.0% | |
| TTTAATGTGCATTGGGTGTA+AGG | + | chr7_2:82777521-82777540 | None:intergenic | 35.0% | |
| ATGGTTAGAGGTCAAAAGTA+AGG | + | chr7_2:82777655-82777674 | None:intergenic | 35.0% | |
| CTTATTAGATCCGTCCTTTA+TGG | - | chr7_2:82777732-82777751 | Msa1082690:CDS | 35.0% | |
| AGTAATGTCTCCATAAAGGA+CGG | + | chr7_2:82777745-82777764 | None:intergenic | 35.0% | |
| !!! | TACACAAGGGCTTATTTTTG+TGG | - | chr7_2:82777772-82777791 | Msa1082690:intron | 35.0% |
| GCTGAAATAACTGATAAGCT+AGG | - | chr7_2:82778034-82778053 | Msa1082690:intron | 35.0% | |
| AAATTAAGGAGACGACCAAA+AGG | + | chr7_2:82778107-82778126 | None:intergenic | 35.0% | |
| TCTACTTGTTCTATATGTGC+AGG | - | chr7_2:82778154-82778173 | Msa1082690:intron | 35.0% | |
| CGATTATGATTTCAGATGCT+CGG | - | chr7_2:82778407-82778426 | Msa1082690:intron | 35.0% | |
| AAATAACCGGCTGAATAGCT+TGG | + | chr7_2:82775170-82775189 | None:intergenic | 40.0% | |
| CTTGAGCTTATAGAGAATGG+TGG | + | chr7_2:82775245-82775264 | None:intergenic | 40.0% | |
| ! | AAACTTACCAATGGTGGGAA+TGG | + | chr7_2:82775287-82775306 | None:intergenic | 40.0% |
| AGGGTTTAATGTGGAAACTG+TGG | - | chr7_2:82775703-82775722 | Msa1082690:intron | 40.0% | |
| !! | TTTGGTACATCGCTGTTTCT+TGG | - | chr7_2:82775800-82775819 | Msa1082690:intron | 40.0% |
| TTATGGGTTTCATGCGATAG+AGG | - | chr7_2:82775907-82775926 | Msa1082690:intron | 40.0% | |
| GTTGTAGCACTGTTGTATAG+AGG | - | chr7_2:82776180-82776199 | Msa1082690:intron | 40.0% | |
| GTTGTAGCACTGTTGTATAG+CGG | - | chr7_2:82776180-82776199 | Msa1082690:intron | 40.0% | |
| ! | AATTTTCTGCGATGCGTGAT+TGG | - | chr7_2:82776324-82776343 | Msa1082690:intron | 40.0% |
| ATTGGTTATTGGGAGTGAGT+TGG | + | chr7_2:82776394-82776413 | None:intergenic | 40.0% | |
| ACTCACTCCCAATAACCAAT+AGG | - | chr7_2:82776394-82776413 | Msa1082690:intron | 40.0% | |
| ! | CAAGAGGCCTATTGGTTATT+GGG | + | chr7_2:82776404-82776423 | None:intergenic | 40.0% |
| ! | TCAAGAGGCCTATTGGTTAT+TGG | + | chr7_2:82776405-82776424 | None:intergenic | 40.0% |
| AAACAAGTCAAGAGGCCTAT+TGG | + | chr7_2:82776412-82776431 | None:intergenic | 40.0% | |
| !! | CTTGTTTCTTGGGCCTATTT+TGG | - | chr7_2:82776425-82776444 | Msa1082690:intron | 40.0% |
| CAATGTCTGAGAGTAATGCA+AGG | + | chr7_2:82776456-82776475 | None:intergenic | 40.0% | |
| TGTGGGGGAAAATTGGAAAA+TGG | - | chr7_2:82776580-82776599 | Msa1082690:intron | 40.0% | |
| ! | AACCCAAGTCTCTTGATGAT+AGG | + | chr7_2:82776897-82776916 | None:intergenic | 40.0% |
| !!! | CGTTAGTTTTAGGCTGTTAC+TGG | - | chr7_2:82776973-82776992 | Msa1082690:intron | 40.0% |
| ATTATCCAACTAAGTGGGGT+CGG | + | chr7_2:82777091-82777110 | None:intergenic | 40.0% | |
| CATACTGTATCACAATGGAG+AGG | + | chr7_2:82777254-82777273 | None:intergenic | 40.0% | |
| TGGCTCATACTGTATCACAA+TGG | + | chr7_2:82777259-82777278 | None:intergenic | 40.0% | |
| AAGTAAGGTGATTTACGCCA+AGG | + | chr7_2:82777640-82777659 | None:intergenic | 40.0% | |
| TAGCTTCAACAACACGATCT+CGG | + | chr7_2:82777811-82777830 | None:intergenic | 40.0% | |
| ! | AGATCGTGTTGTTGAAGCTA+GGG | - | chr7_2:82777811-82777830 | Msa1082690:intron | 40.0% |
| TCAGCAGCATTCATAGCATT+TGG | + | chr7_2:82778019-82778038 | None:intergenic | 40.0% | |
| AAGCAGGGAAGAGGAAATTA+AGG | + | chr7_2:82778121-82778140 | None:intergenic | 40.0% | |
| TTCATAAAGTCCTTCACCAG+AGG | + | chr7_2:82778202-82778221 | None:intergenic | 40.0% | |
| TCTGGTGAAGGACTTTATGA+AGG | - | chr7_2:82778201-82778220 | Msa1082690:CDS | 40.0% | |
| GACTTTATGAAGGACTAGAC+TGG | - | chr7_2:82778211-82778230 | Msa1082690:CDS | 40.0% | |
| CTCAAACAACATTGCAAGCA+AGG | - | chr7_2:82778236-82778255 | Msa1082690:CDS | 40.0% | |
| TGATTTCAGATGCTCGGATA+TGG | - | chr7_2:82778413-82778432 | Msa1082690:intron | 40.0% | |
| ATCAGATCTCTCTTCGTGGT+TGG | + | chr7_2:82774954-82774973 | None:intergenic | 45.0% | |
| AGATCGGTGAAATTGGGATG+AGG | + | chr7_2:82775038-82775057 | None:intergenic | 45.0% | |
| CATTCACCAAGCTATTCAGC+CGG | - | chr7_2:82775161-82775180 | Msa1082690:intron | 45.0% | |
| AGCTTTACTGTGTGGGATGT+TGG | - | chr7_2:82775740-82775759 | Msa1082690:intron | 45.0% | |
| TTTACTGTGTGGGATGTTGG+TGG | - | chr7_2:82775743-82775762 | Msa1082690:intron | 45.0% | |
| TGTTTCTTGGCGGCGTAATA+TGG | - | chr7_2:82775813-82775832 | Msa1082690:intron | 45.0% | |
| !! | AGGCCTCTTGACTTGTTTCT+TGG | - | chr7_2:82776414-82776433 | Msa1082690:intron | 45.0% |
| !! | GGCCTCTTGACTTGTTTCTT+GGG | - | chr7_2:82776415-82776434 | Msa1082690:intron | 45.0% |
| TTTCCCCCACATCACTCTTT+GGG | + | chr7_2:82776571-82776590 | None:intergenic | 45.0% | |
| ! | TTTTCCCCCACATCACTCTT+TGG | + | chr7_2:82776572-82776591 | None:intergenic | 45.0% |
| AGAGTGATGTGGGGGAAAAT+TGG | - | chr7_2:82776573-82776592 | Msa1082690:intron | 45.0% | |
| GGGGGAAAATTGGAAAATGG+AGG | - | chr7_2:82776583-82776602 | Msa1082690:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr7_2:82776760-82776779 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr7_2:82776761-82776780 | None:intergenic | 45.0% |
| !! | TTTGAGGTGCACTAGCTCTA+GGG | - | chr7_2:82776794-82776813 | Msa1082690:intron | 45.0% |
| GTCTCAGTCTATTGCTAACG+TGG | - | chr7_2:82777603-82777622 | Msa1082690:intron | 45.0% | |
| AGTCTATTGCTAACGTGGAC+TGG | - | chr7_2:82777608-82777627 | Msa1082690:intron | 45.0% | |
| ! | GAGATCGTGTTGTTGAAGCT+AGG | - | chr7_2:82777810-82777829 | Msa1082690:intron | 45.0% |
| GATGAGAATGGACAGAAGCA+GGG | + | chr7_2:82778136-82778155 | None:intergenic | 45.0% | |
| AGATGAGAATGGACAGAAGC+AGG | + | chr7_2:82778137-82778156 | None:intergenic | 45.0% | |
| TTCATGCAGCCCTTGACTAA+AGG | + | chr7_2:82778371-82778390 | None:intergenic | 45.0% | |
| GGAGATCAGATCTCTCTTCG+TGG | + | chr7_2:82774958-82774977 | None:intergenic | 50.0% | |
| CAGCCGGTTATTTGCGAAGA+AGG | - | chr7_2:82775177-82775196 | Msa1082690:intron | 50.0% | |
| ! | GAGAATGGTGGTCTTACCAG+CGG | + | chr7_2:82775233-82775252 | None:intergenic | 50.0% |
| ! | CTTACCAATGGTGGGAATGG+TGG | + | chr7_2:82775284-82775303 | None:intergenic | 50.0% |
| ACATGTCCGACACCTAGACA+CGG | - | chr7_2:82775446-82775465 | Msa1082690:CDS | 50.0% | |
| ! | GATTAGCCGTGTCTAGGTGT+CGG | + | chr7_2:82775455-82775474 | None:intergenic | 50.0% |
| ACCTAGACACGGCTAATCCT+AGG | - | chr7_2:82775457-82775476 | Msa1082690:CDS | 50.0% | |
| !! | TCCTAGGATTAGCCGTGTCT+AGG | + | chr7_2:82775461-82775480 | None:intergenic | 50.0% |
| !! | AATCCTAGGAGTGTCGACGT+TGG | - | chr7_2:82775471-82775490 | Msa1082690:CDS | 50.0% |
| !! | GGTACATCGCTGTTTCTTGG+CGG | - | chr7_2:82775803-82775822 | Msa1082690:intron | 50.0% |
| GGCCCAAGAAACAAGTCAAG+AGG | + | chr7_2:82776420-82776439 | None:intergenic | 50.0% | |
| TATGGGCCCAAAGAGTGATG+TGG | - | chr7_2:82776562-82776581 | Msa1082690:intron | 50.0% | |
| ATGGGCCCAAAGAGTGATGT+GGG | - | chr7_2:82776563-82776582 | Msa1082690:intron | 50.0% | |
| ATGGAGGAAATTGGGTGACG+TGG | - | chr7_2:82776599-82776618 | Msa1082690:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr7_2:82776756-82776775 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr7_2:82776762-82776781 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr7_2:82776759-82776778 | Msa1082690:intron | 50.0% | |
| ! | GTTTGAGGTGCACTAGCTCT+AGG | - | chr7_2:82776793-82776812 | Msa1082690:intron | 50.0% |
| !! | GCACTAGCTCTAGGGTTACA+AGG | - | chr7_2:82776802-82776821 | Msa1082690:intron | 50.0% |
| ACTAAGTGGGGTCGGATACA+TGG | + | chr7_2:82777083-82777102 | None:intergenic | 50.0% | |
| TGTATCCGACCCCACTTAGT+TGG | - | chr7_2:82777083-82777102 | Msa1082690:intron | 50.0% | |
| !! | ACGTGGACTGGCTTAAACCT+TGG | - | chr7_2:82777620-82777639 | Msa1082690:intron | 50.0% |
| GCTGCACAGGATGTTAAACG+AGG | - | chr7_2:82777838-82777857 | Msa1082690:intron | 50.0% | |
| ATTCACTTCGTCAGCGTCAC+TGG | - | chr7_2:82778062-82778081 | Msa1082690:intron | 50.0% | |
| AATGGACAGAAGCAGGGAAG+AGG | + | chr7_2:82778130-82778149 | None:intergenic | 50.0% | |
| ACATGTGCTACCTCTGGTGA+AGG | - | chr7_2:82778189-82778208 | Msa1082690:CDS | 50.0% | |
| GTCACCACCATTCCCACCAT+TGG | - | chr7_2:82775277-82775296 | Msa1082690:intron | 55.0% | |
| ATGTGTCTGACCGACCGTGT+CGG | - | chr7_2:82775416-82775435 | Msa1082690:CDS | 55.0% | |
| GACATGTGTCGTGTCCGACA+CGG | + | chr7_2:82775433-82775452 | None:intergenic | 55.0% | |
| AGACCAACGTCGACACTCCT+AGG | + | chr7_2:82775477-82775496 | None:intergenic | 55.0% | |
| !! | GGATGTTGGTGGCCAGGATA+AGG | - | chr7_2:82775754-82775773 | Msa1082690:intron | 55.0% |
| TGGGCCCAAAGAGTGATGTG+GGG | - | chr7_2:82776564-82776583 | Msa1082690:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr7_2:82776748-82776767 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr7_2:82776747-82776766 | Msa1082690:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr7_2:82776748-82776767 | Msa1082690:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr7_2:82776754-82776773 | Msa1082690:intron | 55.0% | |
| CAGAGGTAGCACATGTGCTC+TGG | + | chr7_2:82778185-82778204 | None:intergenic | 55.0% | |
| CAGAGCACATGTGCTACCTC+TGG | - | chr7_2:82778183-82778202 | Msa1082690:CDS | 55.0% | |
| TGTGTCGTGTCCGACACGGT+CGG | + | chr7_2:82775429-82775448 | None:intergenic | 60.0% | |
| !! | TGTGTGGGATGTTGGTGGCC+AGG | - | chr7_2:82775748-82775767 | Msa1082690:intron | 60.0% |
| GGGCCCAAAGAGTGATGTGG+GGG | - | chr7_2:82776565-82776584 | Msa1082690:intron | 60.0% | |
| AAGCTAGGGACGAGCTGCAC+AGG | - | chr7_2:82777825-82777844 | Msa1082690:intron | 60.0% | |
| ATGGTCGGTCTCGATGCCGC+TGG | - | chr7_2:82775214-82775233 | Msa1082690:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 82774782 | 82778685 | 82774782 | ID=Msa1082690;Name=Msa1082690 |
| chr7_2 | mRNA | 82774782 | 82778685 | 82774782 | ID=Msa1082690-mRNA-1;Parent=Msa1082690;Name=Msa1082690-mRNA-1;_AED=0.18;_eAED=0.18;_QI=192|0.75|0.77|0.88|0.75|0.66|9|323|188 |
| chr7_2 | exon | 82774782 | 82775110 | 82774782 | ID=Msa1082690-mRNA-1:exon:21580;Parent=Msa1082690-mRNA-1 |
| chr7_2 | exon | 82775210 | 82775291 | 82775210 | ID=Msa1082690-mRNA-1:exon:21579;Parent=Msa1082690-mRNA-1 |
| chr7_2 | exon | 82775384 | 82775502 | 82775384 | ID=Msa1082690-mRNA-1:exon:21578;Parent=Msa1082690-mRNA-1 |
| chr7_2 | exon | 82775608 | 82775665 | 82775608 | ID=Msa1082690-mRNA-1:exon:21577;Parent=Msa1082690-mRNA-1 |
| chr7_2 | exon | 82776855 | 82776937 | 82776855 | ID=Msa1082690-mRNA-1:exon:21576;Parent=Msa1082690-mRNA-1 |
| chr7_2 | exon | 82777692 | 82777762 | 82777692 | ID=Msa1082690-mRNA-1:exon:21575;Parent=Msa1082690-mRNA-1 |
| chr7_2 | exon | 82778169 | 82778330 | 82778169 | ID=Msa1082690-mRNA-1:exon:21574;Parent=Msa1082690-mRNA-1 |
| chr7_2 | exon | 82778454 | 82778606 | 82778454 | ID=Msa1082690-mRNA-1:exon:21573;Parent=Msa1082690-mRNA-1 |
| chr7_2 | exon | 82778661 | 82778685 | 82778661 | ID=Msa1082690-mRNA-1:exon:21572;Parent=Msa1082690-mRNA-1 |
| chr7_2 | five_prime_UTR | 82778661 | 82778685 | 82778661 | ID=Msa1082690-mRNA-1:five_prime_utr;Parent=Msa1082690-mRNA-1 |
| chr7_2 | five_prime_UTR | 82778454 | 82778606 | 82778454 | ID=Msa1082690-mRNA-1:five_prime_utr;Parent=Msa1082690-mRNA-1 |
| chr7_2 | five_prime_UTR | 82778317 | 82778330 | 82778317 | ID=Msa1082690-mRNA-1:five_prime_utr;Parent=Msa1082690-mRNA-1 |
| chr7_2 | CDS | 82778169 | 82778316 | 82778169 | ID=Msa1082690-mRNA-1:cds;Parent=Msa1082690-mRNA-1 |
| chr7_2 | CDS | 82777692 | 82777762 | 82777692 | ID=Msa1082690-mRNA-1:cds;Parent=Msa1082690-mRNA-1 |
| chr7_2 | CDS | 82776855 | 82776937 | 82776855 | ID=Msa1082690-mRNA-1:cds;Parent=Msa1082690-mRNA-1 |
| chr7_2 | CDS | 82775608 | 82775665 | 82775608 | ID=Msa1082690-mRNA-1:cds;Parent=Msa1082690-mRNA-1 |
| chr7_2 | CDS | 82775384 | 82775502 | 82775384 | ID=Msa1082690-mRNA-1:cds;Parent=Msa1082690-mRNA-1 |
| chr7_2 | CDS | 82775210 | 82775291 | 82775210 | ID=Msa1082690-mRNA-1:cds;Parent=Msa1082690-mRNA-1 |
| chr7_2 | CDS | 82775105 | 82775110 | 82775105 | ID=Msa1082690-mRNA-1:cds;Parent=Msa1082690-mRNA-1 |
| chr7_2 | three_prime_UTR | 82774782 | 82775104 | 82774782 | ID=Msa1082690-mRNA-1:three_prime_utr;Parent=Msa1082690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
