AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1109350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1109350 MtrunA17_Chr7g0243261 93.529 170 3 1 1 162 1 170 1.00e-112 317
Msa1109350 MtrunA17_Chr4g0005561 80.000 170 26 1 1 162 1 170 3.96e-96 275
Msa1109350 MtrunA17_Chr5g0418311 47.222 180 77 3 1 162 1 180 4.92e-54 169
Msa1109350 MtrunA17_Chr4g0061181 45.402 174 83 3 1 162 1 174 3.77e-48 154
Msa1109350 MtrunA17_Chr7g0269431 41.772 79 44 2 48 125 33 110 4.55e-15 68.2
Msa1109350 MtrunA17_Chr1g0195361 28.421 95 66 2 48 141 35 128 1.74e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1109350 AT3G08890.1 75.294 170 34 1 1 162 1 170 4.75e-95 272
Msa1109350 AT3G08890.2 75.294 170 34 1 1 162 1 170 4.75e-95 272
Msa1109350 AT5G37070.1 74.118 170 36 1 1 162 1 170 1.05e-91 264
Msa1109350 AT5G01610.2 68.824 170 45 1 1 162 1 170 2.83e-87 253
Msa1109350 AT5G01610.1 68.824 170 45 1 1 162 1 170 2.83e-87 253
Msa1109350 AT2G03350.1 47.619 168 76 3 7 162 12 179 3.33e-48 154
Msa1109350 AT1G02816.1 28.696 115 79 2 49 160 35 149 1.55e-14 67.8
Msa1109350 AT4G02360.1 31.068 103 69 2 48 149 31 132 4.50e-13 63.5
Msa1109350 AT4G02370.1 30.526 95 65 1 48 141 34 128 5.25e-13 63.5

Find 47 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTCACAACTACTGTTTC+TGG 0.191177 7_3:-52840133 Msa1109350:CDS
AGAAGAGTGGTTGGTGAATC+TGG 0.237015 7_3:-52842633 Msa1109350:five_prime_UTR
TGGCTCGTCAACAAATTAAA+AGG 0.258287 7_3:-52840694 Msa1109350:intron
TGAACAAGGTTGGATCTTAC+TGG 0.286424 7_3:-52842593 Msa1109350:CDS
AACTACTGTTTCTGGTTACT+TGG 0.322844 7_3:-52840125 Msa1109350:CDS
AGGAAAGCTAGCTGATATAG+AGG 0.343413 7_3:-52840098 Msa1109350:CDS
CTCATAGTTTGTTGCGTCGC+GGG 0.350732 7_3:+52840234 None:intergenic
TAATTTGTTGACGAGCCATT+TGG 0.400342 7_3:+52840699 None:intergenic
GACAGAGTTGAGTTCCTTGT+TGG 0.400423 7_3:+52842557 None:intergenic
CCAGCAGTGAAGTGCAGCTT+TGG 0.409039 7_3:+52840019 None:intergenic
CTTTGGTCCCTCGGATGTAA+TGG 0.437677 7_3:+52840036 None:intergenic
GTTTCTGGTTACTTGGAGAA+AGG 0.453263 7_3:-52840118 Msa1109350:CDS
GCATGAAGAAAACAAGGAAA+AGG 0.453741 7_3:-52839997 Msa1109350:CDS
TTATATTTATACATTTAGAA+TGG 0.463251 7_3:-52842705 Msa1109350:five_prime_UTR
CCAAAGCTGCACTTCACTGC+TGG 0.476094 7_3:-52840019 Msa1109350:CDS
GTAGAGAGAAGAAGAGTGGT+TGG 0.485096 7_3:-52842642 Msa1109350:five_prime_UTR
TCGCGGGGAAAGATTCCTAT+TGG 0.487217 7_3:+52840250 None:intergenic
TCACTGTCAAGCAGCATTGA+AGG 0.491753 7_3:-52840727 Msa1109350:CDS
AAGGAGTATGATCTACCAAT+AGG 0.492134 7_3:-52840265 Msa1109350:CDS
ATTCCTCAAGTGTGTGAAGT+AGG 0.513172 7_3:-52840178 Msa1109350:CDS
GGTTGGTGAATCTGGGTGAA+TGG 0.514189 7_3:-52842625 Msa1109350:exon
GAAGTGCAGCTTTGGTCCCT+CGG 0.517935 7_3:+52840027 None:intergenic
GAAGAGTGGTTGGTGAATCT+GGG 0.518190 7_3:-52842632 Msa1109350:five_prime_UTR
CATGAAGAAAACAAGGAAAA+GGG 0.522722 7_3:-52839996 Msa1109350:CDS
TTTCACCCACACCAACACTT+TGG 0.523358 7_3:+52840066 None:intergenic
GATCAGGTATTGAACAAGGT+TGG 0.526839 7_3:-52842603 Msa1109350:CDS
TGAATCTGGGTGAATGGATC+AGG 0.543188 7_3:-52842619 Msa1109350:exon
TCATAGTTTGTTGCGTCGCG+GGG 0.545453 7_3:+52840235 None:intergenic
CTGCTGGCATGAAGAAAACA+AGG 0.556882 7_3:-52840003 Msa1109350:CDS
GCATATGAAGTTTCTAGAGA+TGG 0.564091 7_3:-52839971 Msa1109350:CDS
GGAAAGCTAGCTGATATAGA+GGG 0.565162 7_3:-52840097 Msa1109350:CDS
TTTCGTAGAGAGAAGAAGAG+TGG 0.588907 7_3:-52842646 Msa1109350:five_prime_UTR
ACTCATAGTTTGTTGCGTCG+CGG 0.599993 7_3:+52840233 None:intergenic
ACTCTTCTTCTCTCTACGAA+AGG 0.603991 7_3:+52842648 None:intergenic
AATAATTAAGAATAAGCCCA+TGG 0.608034 7_3:-52842757 None:intergenic
TGAAGACCAAAGTGTTGGTG+TGG 0.610783 7_3:-52840072 Msa1109350:CDS
GGGAATGAAGACCAAAGTGT+TGG 0.613612 7_3:-52840077 Msa1109350:CDS
AACAAGGAACTCAACTCTGT+CGG 0.617344 7_3:-52842555 Msa1109350:CDS
GTTCAGCAAGAAAGCCAACA+AGG 0.625594 7_3:-52842571 Msa1109350:CDS
TAGCCTACTTCACACACTTG+AGG 0.632117 7_3:+52840175 None:intergenic
GCCATTAACAGAGTTGCTGA+AGG 0.634031 7_3:-52840284 Msa1109350:intron
GCATTGAAGGAGGAACCAAA+TGG 0.635369 7_3:-52840714 Msa1109350:CDS
CTGTCAAGCAGCATTGAAGG+AGG 0.660543 7_3:-52840724 Msa1109350:CDS
AGTTACCGCCATTACATCCG+AGG 0.662266 7_3:-52840044 Msa1109350:CDS
AATGGATCAGGTATTGAACA+AGG 0.667362 7_3:-52842607 Msa1109350:CDS
GTTACCGCCATTACATCCGA+GGG 0.676710 7_3:-52840043 Msa1109350:CDS
GAAGACCAAAGTGTTGGTGT+GGG 0.680068 7_3:-52840071 Msa1109350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTTATACATTTAGAA+TGG - chr7_3:52839996-52840015 Msa1109350:CDS 10.0%
!! ATAATAAAAAAGAGTAAAAA+GGG + chr7_3:52840218-52840237 None:intergenic 10.0%
!! AATAATAAAAAAGAGTAAAA+AGG + chr7_3:52840219-52840238 None:intergenic 10.0%
!! TAGATTATTTAATGATTATT+TGG - chr7_3:52840555-52840574 Msa1109350:intron 10.0%
!!! ATAAATAAATAAAAGTTTTG+GGG - chr7_3:52840742-52840761 Msa1109350:intron 10.0%
!! TAATAAAAAAGAGTAAAAAG+GGG + chr7_3:52840217-52840236 None:intergenic 15.0%
!!! TAAATAAATAAAAGTTTTGG+GGG - chr7_3:52840743-52840762 Msa1109350:intron 15.0%
!! TAAATATTCTACTTTGATTA+AGG - chr7_3:52842116-52842135 Msa1109350:intron 15.0%
!! AATAAAGATAATATAAGCTA+TGG - chr7_3:52842216-52842235 Msa1109350:intron 15.0%
!! AATAAAAAAGAGTAAAAAGG+GGG + chr7_3:52840216-52840235 None:intergenic 20.0%
!! AAGTATTCAACTAAAAAAAG+AGG + chr7_3:52840265-52840284 None:intergenic 20.0%
!!! TATTTGTCGAATTTTAAATC+TGG - chr7_3:52840469-52840488 Msa1109350:intron 20.0%
!!! AATTTTTCATGCATAATATG+TGG - chr7_3:52841386-52841405 Msa1109350:intron 20.0%
!!! ATTTTTCATGCATAATATGT+GGG - chr7_3:52841387-52841406 Msa1109350:intron 20.0%
!! AATTAAACTGTATCTAAACA+GGG + chr7_3:52842142-52842161 None:intergenic 20.0%
!! TAATTAAACTGTATCTAAAC+AGG + chr7_3:52842143-52842162 None:intergenic 20.0%
!!! ACTTAATTGAACTTATTTTC+TGG + chr7_3:52842329-52842348 None:intergenic 20.0%
! ATAAAAAAGAGTAAAAAGGG+GGG + chr7_3:52840215-52840234 None:intergenic 25.0%
!!! TGATAATGACAATGACATTT+TGG - chr7_3:52840815-52840834 Msa1109350:intron 25.0%
! ACTCATAAAAAGATTGATCA+AGG + chr7_3:52841110-52841129 None:intergenic 25.0%
! CAGATTGATTATTTAATGTC+AGG + chr7_3:52841487-52841506 None:intergenic 25.0%
! ATATATCAATCTATAGACAC+AGG + chr7_3:52841553-52841572 None:intergenic 25.0%
! ATTTGTCCATTTATCTTTAC+TGG - chr7_3:52841664-52841683 Msa1109350:intron 25.0%
! ATTTCTTTGATCTGAATATG+AGG - chr7_3:52841788-52841807 Msa1109350:intron 25.0%
! TTTCTTTGATCTGAATATGA+GGG - chr7_3:52841789-52841808 Msa1109350:intron 25.0%
! TTTATCCCATTTACTGATAA+TGG - chr7_3:52841834-52841853 Msa1109350:intron 25.0%
! GATTTCCATTATCAGTAAAT+GGG + chr7_3:52841842-52841861 None:intergenic 25.0%
! TGATTTCCATTATCAGTAAA+TGG + chr7_3:52841843-52841862 None:intergenic 25.0%
! TTATATTAACACTCTTCCTT+TGG - chr7_3:52841942-52841961 Msa1109350:intron 25.0%
!!! ACTAATCTTTTTCAGACCAT+GGG + chr7_3:52839963-52839982 None:intergenic 30.0%
TAAGAATCATAAGCAAGACA+TGG + chr7_3:52840304-52840323 None:intergenic 30.0%
!! CTCAGCTATCTGATTTTAAT+TGG - chr7_3:52840425-52840444 Msa1109350:intron 30.0%
!!! AATGACATTTTGGTTGTGAT+CGG - chr7_3:52840825-52840844 Msa1109350:intron 30.0%
CTGGCACATAAACATTAATT+GGG + chr7_3:52840928-52840947 None:intergenic 30.0%
!! CATAAACATGTGAAGCATTT+TGG - chr7_3:52840981-52841000 Msa1109350:intron 30.0%
!!! TGTGAAGCATTTTGGTTTAT+CGG - chr7_3:52840989-52841008 Msa1109350:intron 30.0%
!!! GCATGAATTCTAGAATGTTT+TGG - chr7_3:52841038-52841057 Msa1109350:intron 30.0%
!! GTAAAAGTATTAAGTAGTGC+TGG - chr7_3:52841141-52841160 Msa1109350:intron 30.0%
GGGTTTAGTGAATAGAAATT+AGG - chr7_3:52841407-52841426 Msa1109350:intron 30.0%
AATAGAAATTAGGAAGCCTA+AGG - chr7_3:52841417-52841436 Msa1109350:intron 30.0%
AAAGTCTCACATTTATCCTT+AGG + chr7_3:52841436-52841455 None:intergenic 30.0%
TAAGGATAAATGTGAGACTT+TGG - chr7_3:52841435-52841454 Msa1109350:intron 30.0%
AACTGTCCAGTAAAGATAAA+TGG + chr7_3:52841673-52841692 None:intergenic 30.0%
!! TTGAAACTTTTCGCTTTGTT+TGG - chr7_3:52841691-52841710 Msa1109350:intron 30.0%
!!! TGAAACTTTTCGCTTTGTTT+GGG - chr7_3:52841692-52841711 Msa1109350:intron 30.0%
! CTTTGTTTGGGAAAATATGT+TGG - chr7_3:52841704-52841723 Msa1109350:intron 30.0%
TAATGACTTAACAATTGCCT+TGG - chr7_3:52841732-52841751 Msa1109350:intron 30.0%
AACAAAGAACTAGAAAACCA+AGG + chr7_3:52841752-52841771 None:intergenic 30.0%
!!! TTGGTTTTCTAGTTCTTTGT+TGG - chr7_3:52841751-52841770 Msa1109350:intron 30.0%
AAATCATTTGTGAGTCTTGA+GGG - chr7_3:52841857-52841876 Msa1109350:intron 30.0%
! TTCAACATTTGCTAGTCTAA+TGG + chr7_3:52841894-52841913 None:intergenic 30.0%
ACAGTGACTAAAAAAACCAA+AGG + chr7_3:52841961-52841980 None:intergenic 30.0%
! TTTTTCTGTGTTTCTCAATC+AGG - chr7_3:52842052-52842071 Msa1109350:intron 30.0%
!!! ATGTCGTAAGCTATTTTTGT+TGG - chr7_3:52842273-52842292 Msa1109350:intron 30.0%
CATGTTAGAGGGTAAAATTA+AGG + chr7_3:52842365-52842384 None:intergenic 30.0%
! CTTAATTTTACCCTCTAACA+TGG - chr7_3:52842363-52842382 Msa1109350:intron 30.0%
CATGAAGAAAACAAGGAAAA+GGG - chr7_3:52842705-52842724 Msa1109350:five_prime_UTR 30.0%
!!! GACTAATCTTTTTCAGACCA+TGG + chr7_3:52839964-52839983 None:intergenic 35.0%
!! AATGGATCAGGTATTGAACA+AGG - chr7_3:52840094-52840113 Msa1109350:CDS 35.0%
ACACATACATGCATGTACTT+TGG - chr7_3:52840380-52840399 Msa1109350:intron 35.0%
CACATACATGCATGTACTTT+GGG - chr7_3:52840381-52840400 Msa1109350:intron 35.0%
ATTCTCTTCACAAAGGAAGT+CGG + chr7_3:52840496-52840515 None:intergenic 35.0%
TTGAGATCGTACAACCAAAT+TGG + chr7_3:52840525-52840544 None:intergenic 35.0%
! TGAGTCGAGATATGTTCTTT+TGG - chr7_3:52840662-52840681 Msa1109350:intron 35.0%
! GAGTCGAGATATGTTCTTTT+GGG - chr7_3:52840663-52840682 Msa1109350:intron 35.0%
CCAAGTAAGTTTCATATCCA+GGG + chr7_3:52840694-52840713 None:intergenic 35.0%
TCCAAGTAAGTTTCATATCC+AGG + chr7_3:52840695-52840714 None:intergenic 35.0%
!!! ATGACATTTTGGTTGTGATC+GGG - chr7_3:52840826-52840845 Msa1109350:intron 35.0%
TAAAGTCACATGATGCACAA+AGG + chr7_3:52840888-52840907 None:intergenic 35.0%
CCTGGCACATAAACATTAAT+TGG + chr7_3:52840929-52840948 None:intergenic 35.0%
CCAATTAATGTTTATGTGCC+AGG - chr7_3:52840926-52840945 Msa1109350:intron 35.0%
GATTGGTAGGCTTAAAAACT+TGG + chr7_3:52840955-52840974 None:intergenic 35.0%
! TTTTAAGCCTACCAATCTAC+CGG - chr7_3:52840958-52840977 Msa1109350:intron 35.0%
AATGCTTCACATGTTTATGC+CGG + chr7_3:52840980-52840999 None:intergenic 35.0%
! TGGTTTGTGTATCAGTAAAG+AGG - chr7_3:52841058-52841077 Msa1109350:intron 35.0%
GGTTTGTGTATCAGTAAAGA+GGG - chr7_3:52841059-52841078 Msa1109350:intron 35.0%
GTTTGTGTATCAGTAAAGAG+GGG - chr7_3:52841060-52841079 Msa1109350:intron 35.0%
TCAGAAGAGAAATACAGTCA+CGG + chr7_3:52841170-52841189 None:intergenic 35.0%
CTACATATGAGTTTACCAGT+AGG - chr7_3:52841193-52841212 Msa1109350:intron 35.0%
GTATTCAACATGGGAAATCA+AGG + chr7_3:52841223-52841242 None:intergenic 35.0%
GATTTCCCATGTTGAATACT+TGG - chr7_3:52841224-52841243 Msa1109350:intron 35.0%
GAACACCAAGTATTCAACAT+GGG + chr7_3:52841232-52841251 None:intergenic 35.0%
AGAACACCAAGTATTCAACA+TGG + chr7_3:52841233-52841252 None:intergenic 35.0%
!!! GTTTATTTTGCCTCTGTTGT+AGG - chr7_3:52841291-52841310 Msa1109350:intron 35.0%
TAAATGGACAAATACCTCTC+CGG + chr7_3:52841657-52841676 None:intergenic 35.0%
TTTGATCTGAATATGAGGGA+AGG - chr7_3:52841793-52841812 Msa1109350:intron 35.0%
GAAATCATTTGTGAGTCTTG+AGG - chr7_3:52841856-52841875 Msa1109350:intron 35.0%
!! TAATTTGTTGACGAGCCATT+TGG + chr7_3:52842005-52842024 None:intergenic 35.0%
TGGCTCGTCAACAAATTAAA+AGG - chr7_3:52842007-52842026 Msa1109350:intron 35.0%
! TTTTACCCTCTAACATGGTA+AGG - chr7_3:52842368-52842387 Msa1109350:intron 35.0%
TGATACCTTACCATGTTAGA+GGG + chr7_3:52842376-52842395 None:intergenic 35.0%
ATGATACCTTACCATGTTAG+AGG + chr7_3:52842377-52842396 None:intergenic 35.0%
!! ATGGTAAGGTATCATTTTGC+AGG - chr7_3:52842382-52842401 Msa1109350:intron 35.0%
! AAGGAGTATGATCTACCAAT+AGG - chr7_3:52842436-52842455 Msa1109350:intron 35.0%
!! AACTACTGTTTCTGGTTACT+TGG - chr7_3:52842576-52842595 Msa1109350:CDS 35.0%
GCATGAAGAAAACAAGGAAA+AGG - chr7_3:52842704-52842723 Msa1109350:five_prime_UTR 35.0%
! GCATATGAAGTTTCTAGAGA+TGG - chr7_3:52842730-52842749 Msa1109350:five_prime_UTR 35.0%
ACTCTTCTTCTCTCTACGAA+AGG + chr7_3:52840056-52840075 None:intergenic 40.0%
TTTCGTAGAGAGAAGAAGAG+TGG - chr7_3:52840055-52840074 Msa1109350:CDS 40.0%
!! GATCAGGTATTGAACAAGGT+TGG - chr7_3:52840098-52840117 Msa1109350:CDS 40.0%
TGAACAAGGTTGGATCTTAC+TGG - chr7_3:52840108-52840127 Msa1109350:CDS 40.0%
AACAAGGAACTCAACTCTGT+CGG - chr7_3:52840146-52840165 Msa1109350:CDS 40.0%
TTCCTTTGTGAAGAGAATCC+AGG - chr7_3:52840498-52840517 Msa1109350:intron 40.0%
AAGAGAATCCAGGACCAATT+TGG - chr7_3:52840508-52840527 Msa1109350:intron 40.0%
! GTCGATTGATTTCGAATCGA+TGG - chr7_3:52840595-52840614 Msa1109350:intron 40.0%
CCCTGGATATGAAACTTACT+TGG - chr7_3:52840691-52840710 Msa1109350:intron 40.0%
TGGGGGAGAACTGTAAAATT+CGG - chr7_3:52840760-52840779 Msa1109350:intron 40.0%
TGTGCATCATGTGACTTTAG+AGG - chr7_3:52840889-52840908 Msa1109350:intron 40.0%
GGCTTAAAAACTTGGATTCC+TGG + chr7_3:52840947-52840966 None:intergenic 40.0%
ACATGTTTATGCCGGTAGAT+TGG + chr7_3:52840972-52840991 None:intergenic 40.0%
TTGCCTCTGTTGTAGGATAT+TGG - chr7_3:52841298-52841317 Msa1109350:intron 40.0%
ACTCCAATATCCTACAACAG+AGG + chr7_3:52841304-52841323 None:intergenic 40.0%
TAAATGTGAGACTTTGGCGT+TGG - chr7_3:52841441-52841460 Msa1109350:intron 40.0%
AAATGTGAGACTTTGGCGTT+GGG - chr7_3:52841442-52841461 Msa1109350:intron 40.0%
!!! ATCAATTTTGAAGCTGACGC+CGG - chr7_3:52841635-52841654 Msa1109350:intron 40.0%
TCCTTCAGCAACTCTGTTAA+TGG + chr7_3:52842421-52842440 None:intergenic 40.0%
ATTCCTCAAGTGTGTGAAGT+AGG - chr7_3:52842523-52842542 Msa1109350:intron 40.0%
!! GTTTCTGGTTACTTGGAGAA+AGG - chr7_3:52842583-52842602 Msa1109350:CDS 40.0%
AGGAAAGCTAGCTGATATAG+AGG - chr7_3:52842603-52842622 Msa1109350:CDS 40.0%
GGAAAGCTAGCTGATATAGA+GGG - chr7_3:52842604-52842623 Msa1109350:CDS 40.0%
GTAGAGAGAAGAAGAGTGGT+TGG - chr7_3:52840059-52840078 Msa1109350:CDS 45.0%
!! AGAAGAGTGGTTGGTGAATC+TGG - chr7_3:52840068-52840087 Msa1109350:CDS 45.0%
!! GAAGAGTGGTTGGTGAATCT+GGG - chr7_3:52840069-52840088 Msa1109350:CDS 45.0%
TGAATCTGGGTGAATGGATC+AGG - chr7_3:52840082-52840101 Msa1109350:CDS 45.0%
GTTCAGCAAGAAAGCCAACA+AGG - chr7_3:52840130-52840149 Msa1109350:CDS 45.0%
GACAGAGTTGAGTTCCTTGT+TGG + chr7_3:52840147-52840166 None:intergenic 45.0%
GTCCTGGATTCTCTTCACAA+AGG + chr7_3:52840503-52840522 None:intergenic 45.0%
TCGTACAACCAAATTGGTCC+TGG + chr7_3:52840519-52840538 None:intergenic 45.0%
!!! TGTTCTTTTGGGATTCTCCC+TGG - chr7_3:52840674-52840693 Msa1109350:intron 45.0%
!!! ACATTTTGGTTGTGATCGGG+AGG - chr7_3:52840829-52840848 Msa1109350:intron 45.0%
!!! CATTTTGGTTGTGATCGGGA+GGG - chr7_3:52840830-52840849 Msa1109350:intron 45.0%
!!! ATTTTGGTTGTGATCGGGAG+GGG - chr7_3:52840831-52840850 Msa1109350:intron 45.0%
GGCGGTGTAACTAGTAAACT+AGG - chr7_3:52840854-52840873 Msa1109350:intron 45.0%
GTTTATGCCGGTAGATTGGT+AGG + chr7_3:52840968-52840987 None:intergenic 45.0%
GGTGACAGCTTGATTCCAAA+GGG + chr7_3:52841089-52841108 None:intergenic 45.0%
AGGTGACAGCTTGATTCCAA+AGG + chr7_3:52841090-52841109 None:intergenic 45.0%
GGAAATCAAGGAAAGCCTAC+TGG + chr7_3:52841211-52841230 None:intergenic 45.0%
! TCACTGTCAAGCAGCATTGA+AGG - chr7_3:52841974-52841993 Msa1109350:intron 45.0%
GCATTGAAGGAGGAACCAAA+TGG - chr7_3:52841987-52842006 Msa1109350:intron 45.0%
GCCATTAACAGAGTTGCTGA+AGG - chr7_3:52842417-52842436 Msa1109350:intron 45.0%
!! ACTCATAGTTTGTTGCGTCG+CGG + chr7_3:52842471-52842490 None:intergenic 45.0%
TAGCCTACTTCACACACTTG+AGG + chr7_3:52842529-52842548 None:intergenic 45.0%
CGCTTCACAACTACTGTTTC+TGG - chr7_3:52842568-52842587 Msa1109350:CDS 45.0%
GGGAATGAAGACCAAAGTGT+TGG - chr7_3:52842624-52842643 Msa1109350:exon 45.0%
!! TGAAGACCAAAGTGTTGGTG+TGG - chr7_3:52842629-52842648 Msa1109350:five_prime_UTR 45.0%
!! GAAGACCAAAGTGTTGGTGT+GGG - chr7_3:52842630-52842649 Msa1109350:five_prime_UTR 45.0%
TTTCACCCACACCAACACTT+TGG + chr7_3:52842638-52842657 None:intergenic 45.0%
CTGCTGGCATGAAGAAAACA+AGG - chr7_3:52842698-52842717 Msa1109350:five_prime_UTR 45.0%
!! TATTTATTTATAAAAAAACA+CGG + chr7_3:52840733-52840752 None:intergenic 5.0%
!!! TTATAAATAAATAAAAGTTT+TGG - chr7_3:52840740-52840759 Msa1109350:intron 5.0%
!!! TATAAATAAATAAAAGTTTT+GGG - chr7_3:52840741-52840760 Msa1109350:intron 5.0%
!! GGTTGGTGAATCTGGGTGAA+TGG - chr7_3:52840076-52840095 Msa1109350:CDS 50.0%
! AAAAGGGGGGTGTAGCAGTA+GGG + chr7_3:52840202-52840221 None:intergenic 50.0%
! AAAAAGGGGGGTGTAGCAGT+AGG + chr7_3:52840203-52840222 None:intergenic 50.0%
!! TTTTGGTTGTGATCGGGAGG+GGG - chr7_3:52840832-52840851 Msa1109350:intron 50.0%
AGTAAAGAGGGGCTACCCTT+TGG - chr7_3:52841071-52841090 Msa1109350:intron 50.0%
! CTGTCAAGCAGCATTGAAGG+AGG - chr7_3:52841977-52841996 Msa1109350:intron 50.0%
TCGCGGGGAAAGATTCCTAT+TGG + chr7_3:52842454-52842473 None:intergenic 50.0%
!! TCATAGTTTGTTGCGTCGCG+GGG + chr7_3:52842469-52842488 None:intergenic 50.0%
!! CTCATAGTTTGTTGCGTCGC+GGG + chr7_3:52842470-52842489 None:intergenic 50.0%
AGTTACCGCCATTACATCCG+AGG - chr7_3:52842657-52842676 Msa1109350:five_prime_UTR 50.0%
GTTACCGCCATTACATCCGA+GGG - chr7_3:52842658-52842677 Msa1109350:five_prime_UTR 50.0%
CTTTGGTCCCTCGGATGTAA+TGG + chr7_3:52842668-52842687 None:intergenic 50.0%
TTTGGTTGTGATCGGGAGGG+GGG - chr7_3:52840833-52840852 Msa1109350:intron 55.0%
! TGGCGTTGGGCACAGGATTA+TGG - chr7_3:52841455-52841474 Msa1109350:intron 55.0%
!!! TTTTGAAGCTGACGCCGGAG+AGG - chr7_3:52841640-52841659 Msa1109350:intron 55.0%
TGGTCCCTCGGATGTAATGG+CGG + chr7_3:52842665-52842684 None:intergenic 55.0%
! GAAGTGCAGCTTTGGTCCCT+CGG + chr7_3:52842677-52842696 None:intergenic 55.0%
CCAGCAGTGAAGTGCAGCTT+TGG + chr7_3:52842685-52842704 None:intergenic 55.0%
CCAAAGCTGCACTTCACTGC+TGG - chr7_3:52842682-52842701 Msa1109350:five_prime_UTR 55.0%
! GAGACTTTGGCGTTGGGCAC+AGG - chr7_3:52841448-52841467 Msa1109350:intron 60.0%
GGTTGTGATCGGGAGGGGGG+CGG - chr7_3:52840836-52840855 Msa1109350:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 52839949 52842774 52839949 ID=Msa1109350;Name=Msa1109350
chr7_3 mRNA 52839949 52842774 52839949 ID=Msa1109350-mRNA-1;Parent=Msa1109350;Name=Msa1109350-mRNA-1;_AED=0.11;_eAED=0.12;_QI=146|0.5|0.66|1|1|1|3|0|162
chr7_3 exon 52839949 52840295 52839949 ID=Msa1109350-mRNA-1:exon:11130;Parent=Msa1109350-mRNA-1
chr7_3 exon 52840695 52840749 52840695 ID=Msa1109350-mRNA-1:exon:11129;Parent=Msa1109350-mRNA-1
chr7_3 exon 52842542 52842774 52842542 ID=Msa1109350-mRNA-1:exon:11128;Parent=Msa1109350-mRNA-1
chr7_3 five_prime_UTR 52842629 52842774 52842629 ID=Msa1109350-mRNA-1:five_prime_utr;Parent=Msa1109350-mRNA-1
chr7_3 CDS 52842542 52842628 52842542 ID=Msa1109350-mRNA-1:cds;Parent=Msa1109350-mRNA-1
chr7_3 CDS 52840695 52840749 52840695 ID=Msa1109350-mRNA-1:cds;Parent=Msa1109350-mRNA-1
chr7_3 CDS 52839949 52840295 52839949 ID=Msa1109350-mRNA-1:cds;Parent=Msa1109350-mRNA-1
Gene Sequence

>Msa1109350

ATGGATCAGGTATTGAACAAGGTTGGATCTTACTGGTTCAGCAAGAAAGCCAACAAGGAACTCAACTCTGTCGGTGATGATTTCAACTCACTGTCAAGCAGCATTGAAGGAGGAACCAAATGGCTCGTCAACAAATTAAAAGAGTTGCTGAAGGAGTATGATCTACCAATAGGAATCTTTCCCCGCGACGCAACAAACTATGAGTTCAATGAAGAAACAAGAAAGCTTGTTGTTTACATTCCTCAAGTGTGTGAAGTAGGCTACAGAGATTCATCAGTCTTGCGCTTCACAACTACTGTTTCTGGTTACTTGGAGAAAGGAAAGCTAGCTGATATAGAGGGAATGAAGACCAAAGTGTTGGTGTGGGTGAAAGTTACCGCCATTACATCCGAGGGACCAAAGCTGCACTTCACTGCTGGCATGAAGAAAACAAGGAAAAGGGAAGCATATGAAGTTTCTAGAGATGGTGTAATTATAGATAAATTCTAA

Protein sequence

>Msa1109350

MDQVLNKVGSYWFSKKANKELNSVGDDFNSLSSSIEGGTKWLVNKLKELLKEYDLPIGIFPRDATNYEFNEETRKLVVYIPQVCEVGYRDSSVLRFTTTVSGYLEKGKLADIEGMKTKVLVWVKVTAITSEGPKLHFTAGMKKTRKREAYEVSRDGVIIDKF*