AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0165440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165440 MtrunA17_Chr1g0153691 90.265 339 7 1 1 313 1 339 0.0 612
Msa0165440 MtrunA17_Chr3g0133751 59.936 312 91 4 17 300 4 309 2.05e-125 361
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165440 AT4G33380.1 53.709 337 110 7 13 313 2 328 1.41e-112 329
Msa0165440 AT4G33380.2 53.116 337 110 8 13 313 2 326 4.12e-109 320

Find 127 sgRNAs with CRISPR-Local

Find 574 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATCTCATTAATTTAAAA+AGG 0.189536 1_4:+46017768 None:intergenic
TAGAGGTGGGTTAAGGTTAC+TGG 0.202638 1_4:+46025005 None:intergenic
AATCAGCTGCACTATCTTTA+TGG 0.210691 1_4:+46018834 None:intergenic
TTTCATAGATCGATCTATTT+TGG 0.218153 1_4:-46024959 Msa0165440:five_prime_UTR
ACCAGATCAGATTCGGAAAA+TGG 0.226467 1_4:-46024411 Msa0165440:CDS
ACCGGTGAAGTTAATGAAAT+TGG 0.259283 1_4:-46024357 Msa0165440:intron
ATACAGATGCAGTTGAAAAT+TGG 0.267336 1_4:-46019500 Msa0165440:intron
ATTCGTATATCAAAATTCTT+AGG 0.287997 1_4:+46017676 None:intergenic
CCTGATGGTGCAGAGGATTT+AGG 0.291489 1_4:-46019132 Msa0165440:intron
TTTCAACGTTAAAAGTTGTT+TGG 0.291531 1_4:+46024933 None:intergenic
CCAGAGGAGGAAGTTCTTCC+AGG 0.300552 1_4:-46018935 Msa0165440:intron
TGGAAGAATCGAATCGAATT+AGG 0.327853 1_4:-46024391 Msa0165440:CDS
ATGACGGTTCTGCGGTTAGA+TGG 0.328426 1_4:-46018868 Msa0165440:CDS
TTCAACGTTAAAAGTTGTTT+GGG 0.335886 1_4:+46024934 None:intergenic
GCTACCTTGTAGATTATTAC+AGG 0.337269 1_4:-46017876 Msa0165440:three_prime_UTR
TTGAATAGCAGAAGCAATAA+TGG 0.346033 1_4:-46024142 Msa0165440:CDS
CTATCCTTAAAATTTAGTTT+TGG 0.353734 1_4:+46018037 None:intergenic
GCTGTGCTTGCTGAAGAAAT+TGG 0.359440 1_4:-46019201 Msa0165440:CDS
TCATAATCTGTATGAAGTTC+AGG 0.363566 1_4:+46018887 None:intergenic
TGGTGGAATGAAGATAATAA+AGG 0.370093 1_4:-46024854 Msa0165440:five_prime_UTR
TGTCTGAGAGTGGTGGGATT+TGG 0.371400 1_4:+46025111 None:intergenic
GAGAGTGGTGGGATTTGGTT+TGG 0.380355 1_4:+46025116 None:intergenic
TTTGGATCAACTAATCATTT+CGG 0.389967 1_4:+46025134 None:intergenic
AGGGATGCTAGTTAAAGCTT+TGG 0.401229 1_4:-46019235 Msa0165440:CDS
TAAAGCTTTGGAGTCTGATT+GGG 0.405512 1_4:-46019223 Msa0165440:CDS
AGATTCTTGGACGGTGTAAT+CGG 0.408270 1_4:-46017602 Msa0165440:three_prime_UTR
ATCTCATGATTCATTGTAAT+AGG 0.411432 1_4:-46017507 Msa0165440:three_prime_UTR
TTAAAGCTTTGGAGTCTGAT+TGG 0.415568 1_4:-46019224 Msa0165440:CDS
TGTGAATTTCGATACCATTC+GGG 0.422775 1_4:+46018010 None:intergenic
TGTGAATCGAAACGTGGGAT+TGG 0.425535 1_4:+46025039 None:intergenic
ACTCTGTTACACATGTAGTT+GGG 0.426181 1_4:+46017628 None:intergenic
ATGTGAATTTCGATACCATT+CGG 0.427345 1_4:+46018009 None:intergenic
GTGATTGTTCCATGGGCCTC+TGG 0.427846 1_4:-46017974 Msa0165440:CDS
GATTTGTTAGAGGTGGGTTA+AGG 0.428795 1_4:+46024998 None:intergenic
CAGGCACTCAAAGCTAGCTT+TGG 0.432487 1_4:-46017857 Msa0165440:three_prime_UTR
TGATTGCTGTCAAGCTTGCT+TGG 0.436458 1_4:-46018816 Msa0165440:CDS
ACCAATTTCATTAACTTCAC+CGG 0.438559 1_4:+46024356 None:intergenic
TGACGGTTCTGCGGTTAGAT+GGG 0.442080 1_4:-46018867 Msa0165440:CDS
AAATAGATCGATCTATGAAA+AGG 0.442748 1_4:+46024962 None:intergenic
TCAGGTGGAAGGGCCCTGCC+TGG 0.445771 1_4:+46018917 None:intergenic
CCTAAATCCTCTGCACCATC+AGG 0.447349 1_4:+46019132 None:intergenic
GGTGGAATGAAGATAATAAA+GGG 0.448672 1_4:-46024853 Msa0165440:five_prime_UTR
TCTACATTCACAACCTCAAC+AGG 0.453666 1_4:+46019168 None:intergenic
AACTCTGTTACACATGTAGT+TGG 0.456981 1_4:+46017627 None:intergenic
CTGCACCAGTGATTGTTCCA+TGG 0.458082 1_4:-46017982 Msa0165440:CDS
TACCATACCGCCTTCTGTGC+TGG 0.460777 1_4:+46017923 None:intergenic
CTCGCTCCATAGCAATGCCT+TGG 0.461557 1_4:+46024110 None:intergenic
TTGCTGAAGAAATTGGCCTT+TGG 0.466078 1_4:-46019194 Msa0165440:CDS
TGCACCAGTGATTGTTCCAT+GGG 0.469487 1_4:-46017981 Msa0165440:CDS
GCAACTCAACCTCCGTACTT+TGG 0.472261 1_4:+46024218 None:intergenic
AGGAGGAAGTTCTTCCAGGC+AGG 0.474177 1_4:-46018931 Msa0165440:CDS
TTCTTGAGAAACGGTAGAGT+TGG 0.476728 1_4:+46019428 None:intergenic
GCTTCTCTTTATATCTACTC+TGG 0.477025 1_4:-46024690 Msa0165440:CDS
AACCTAGGATTTGTTAGAGG+TGG 0.483864 1_4:+46024991 None:intergenic
GAAGTTAAATTAGTTTCTGC+GGG 0.485113 1_4:-46019459 Msa0165440:CDS
AAGATAATAAAGGGTTATGA+TGG 0.490304 1_4:-46024844 Msa0165440:exon
AAAAGGTGAAGGAATTAGAA+GGG 0.491684 1_4:-46024252 Msa0165440:intron
AATAGATCGATCTATGAAAA+GGG 0.491880 1_4:+46024963 None:intergenic
TGTATAAACCAGATCAGATT+CGG 0.492887 1_4:-46024418 Msa0165440:CDS
AAGAACCTAGGATTTGTTAG+AGG 0.493839 1_4:+46024988 None:intergenic
ACCTGCCTCTTCTTGAGAAA+CGG 0.495444 1_4:+46019419 None:intergenic
CAGGTTTGCACTCAGGTGGA+AGG 0.507192 1_4:+46018906 None:intergenic
TCGCTCCATAGCAATGCCTT+GGG 0.512530 1_4:+46024111 None:intergenic
AGGTTTGCACTCAGGTGGAA+GGG 0.517485 1_4:+46018907 None:intergenic
ACCTAGGATTTGTTAGAGGT+GGG 0.518443 1_4:+46024992 None:intergenic
TGAAGTTCAGGTTTGCACTC+AGG 0.518943 1_4:+46018899 None:intergenic
AGAGGTGGGTTAAGGTTACT+GGG 0.519581 1_4:+46025006 None:intergenic
CTTCTTTGGCACGTTTAGCA+TGG 0.526328 1_4:+46018792 None:intergenic
GTATATCAAAATTCTTAGGA+TGG 0.528862 1_4:+46017680 None:intergenic
CATGCTAAACGTGCCAAAGA+AGG 0.528974 1_4:-46018791 Msa0165440:CDS
AATTAGGAAGTCATACAAAC+CGG 0.530432 1_4:-46024375 Msa0165440:CDS
CTCTACCGTTTCTCAAGAAG+AGG 0.531814 1_4:-46019424 Msa0165440:CDS
ATCTTCTGTTTCAAGTGCTG+AGG 0.533874 1_4:+46024196 None:intergenic
CAACTTCAATCAAGAGGAGG+TGG 0.534323 1_4:-46024801 Msa0165440:CDS
AAAAGAATCAAGGGCAATGG+TGG 0.536947 1_4:-46024871 Msa0165440:five_prime_UTR
TGTTGTTGTCTGAGAGTGGT+GGG 0.536980 1_4:+46025105 None:intergenic
AATCAAGAGGAGGTGGAAAG+TGG 0.537407 1_4:-46024794 Msa0165440:CDS
ACCGTTTCTCAAGAAGAGGC+AGG 0.537821 1_4:-46019420 Msa0165440:intron
CTCTGTTACACATGTAGTTG+GGG 0.541132 1_4:+46017629 None:intergenic
GGAACAATCACTGGTGCAGA+TGG 0.546225 1_4:+46017986 None:intergenic
GAGGCCCATGGAACAATCAC+TGG 0.549857 1_4:+46017977 None:intergenic
TATGATGGCAAGAAGTGAGT+GGG 0.550720 1_4:-46024829 Msa0165440:CDS
AGAAGTTAAATTAGTTTCTG+CGG 0.551102 1_4:-46019460 Msa0165440:CDS
ACCCACCTCTAACAAATCCT+AGG 0.552538 1_4:-46024993 Msa0165440:five_prime_UTR
TAAATAATAACCAGCACAGA+AGG 0.557352 1_4:-46017933 Msa0165440:three_prime_UTR
AATAATCTACAAGGTAGCTC+CGG 0.557876 1_4:+46017881 None:intergenic
TTAAATTAGTTTCTGCGGGA+GGG 0.559450 1_4:-46019455 Msa0165440:CDS
AACCAGCACAGAAGGCGGTA+TGG 0.560437 1_4:-46017925 Msa0165440:three_prime_UTR
CGCTTGTTGTTGTCTGAGAG+TGG 0.561319 1_4:+46025101 None:intergenic
TCACTCCCAAGGCATTGCTA+TGG 0.562744 1_4:-46024116 Msa0165440:CDS
GACGGTTCTGCGGTTAGATG+GGG 0.565108 1_4:-46018866 Msa0165440:CDS
AGTTCAGGTTTGCACTCAGG+TGG 0.566503 1_4:+46018902 None:intergenic
TAACACGAGCAATCTAAGTC+CGG 0.570660 1_4:-46017900 Msa0165440:three_prime_UTR
ACAACAAATAGCTTTGACAA+AGG 0.574459 1_4:+46017805 None:intergenic
CTTTCTTTACGTAACTGATG+AGG 0.577699 1_4:-46017552 Msa0165440:three_prime_UTR
ATCAAGAGGAGGTGGAAAGT+GGG 0.584522 1_4:-46024793 Msa0165440:CDS
GGAGGAAGTTCTTCCAGGCA+GGG 0.592808 1_4:-46018930 Msa0165440:CDS
TTGTTGTTGTCTGAGAGTGG+TGG 0.595930 1_4:+46025104 None:intergenic
ATGATGGCAAGAAGTGAGTG+GGG 0.597932 1_4:-46024828 Msa0165440:CDS
TGCAGTTGAAAATTGGCGCA+AGG 0.598206 1_4:-46019493 Msa0165440:CDS
TTCTTGGACGGTGTAATCGG+AGG 0.602263 1_4:-46017599 Msa0165440:three_prime_UTR
ATGAAAAGGGACAAGAACCT+AGG 0.602666 1_4:+46024976 None:intergenic
GTTAAATTAGTTTCTGCGGG+AGG 0.608057 1_4:-46019456 Msa0165440:CDS
AGTGCCTGTAATAATCTACA+AGG 0.610237 1_4:+46017872 None:intergenic
TGGCCTTTGGATACCTGTTG+AGG 0.611467 1_4:-46019181 Msa0165440:CDS
ACATGAATTATATTATGAGT+AGG 0.614114 1_4:+46017474 None:intergenic
TTATGATGGCAAGAAGTGAG+TGG 0.618854 1_4:-46024830 Msa0165440:CDS
GAACTTCATACAGATTATGA+CGG 0.619220 1_4:-46018884 Msa0165440:CDS
AAAGGTGAAGGAATTAGAAG+GGG 0.620122 1_4:-46024251 Msa0165440:intron
GCAACAACTCCAGAGGCCCA+TGG 0.623742 1_4:+46017965 None:intergenic
ACCTCGTGTGAATCGAAACG+TGG 0.627933 1_4:+46025033 None:intergenic
CAAGGCATTGCTATGGAGCG+AGG 0.630111 1_4:-46024109 Msa0165440:intron
TGACAAACCTGATGGTGCAG+AGG 0.630542 1_4:-46019139 Msa0165440:CDS
AATAATGGATCTCACTCCCA+AGG 0.631172 1_4:-46024127 Msa0165440:CDS
GGGATTCAACTTCAATCAAG+AGG 0.638194 1_4:-46024807 Msa0165440:CDS
TACAGATTATGACGGTTCTG+CGG 0.638373 1_4:-46018876 Msa0165440:CDS
GAAACAGAAGATAATTGATG+AGG 0.645919 1_4:-46024185 Msa0165440:CDS
TATTTGTCAAAGCATGACAA+AGG 0.655322 1_4:+46017829 None:intergenic
TTAAGGATAGGTATCCCGAA+TGG 0.659919 1_4:-46018024 Msa0165440:CDS
CAACCTCAACAGGTATCCAA+AGG 0.662747 1_4:+46019178 None:intergenic
TGATGGCAAGAAGTGAGTGG+GGG 0.665004 1_4:-46024827 Msa0165440:CDS
CCCACGTTTCGATTCACACG+AGG 0.669922 1_4:-46025034 Msa0165440:five_prime_UTR
ATAATAACCAGCACAGAAGG+CGG 0.674916 1_4:-46017930 Msa0165440:three_prime_UTR
ATTCAACTTCAATCAAGAGG+AGG 0.681950 1_4:-46024804 Msa0165440:CDS
TCAAGCAGCAACAACTCCAG+AGG 0.687351 1_4:+46017958 None:intergenic
GAACATAATGACAAACCTGA+TGG 0.690687 1_4:-46019147 Msa0165440:CDS
CCTCGTGTGAATCGAAACGT+GGG 0.696328 1_4:+46025034 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTGAAATATTTAAAAATT+TGG - chr1_4:46019933-46019952 Msa0165440:intron 10.0%
!! AATAAAAATAAATTGAAAGT+CGG - chr1_4:46022278-46022297 Msa0165440:intron 10.0%
!!! ATAAAAACTTTTTTTTTTTG+AGG + chr1_4:46024233-46024252 None:intergenic 10.0%
!! TTTATGTTTCAATCATAAAT+TGG - chr1_4:46019619-46019638 Msa0165440:intron 15.0%
!!! TCATTTTATATAACTTTGAA+AGG - chr1_4:46019862-46019881 Msa0165440:intron 15.0%
!!! TTTTTTTACATTCTCTAAAT+AGG - chr1_4:46021307-46021326 Msa0165440:intron 15.0%
!! TTCTTTAAATCTTTACATAT+TGG + chr1_4:46022874-46022893 None:intergenic 15.0%
!!! AATACAAAGATTAATTTTGA+TGG + chr1_4:46023609-46023628 None:intergenic 15.0%
!! TGAAAAAAAATGCAATATTT+GGG - chr1_4:46023814-46023833 Msa0165440:intron 15.0%
!!! TCAAAATTAATTAAGCATTT+TGG + chr1_4:46024368-46024387 None:intergenic 15.0%
!!! TTTCTGTTTTAAGTAAAAAC+AGG + chr1_4:46018000-46018019 None:intergenic 20.0%
!! AAAAGACTAAAACAAACTAA+AGG - chr1_4:46018017-46018036 Msa0165440:CDS 20.0%
!! AAAGACTAAAACAAACTAAA+GGG - chr1_4:46018018-46018037 Msa0165440:CDS 20.0%
!!! TCCAAAAAATTGTGTTTTTA+AGG - chr1_4:46018044-46018063 Msa0165440:CDS 20.0%
!!! ACCTTAAAAACACAATTTTT+TGG + chr1_4:46018048-46018067 None:intergenic 20.0%
!!! AATTGTGTTTTTAAGGTTTA+TGG - chr1_4:46018051-46018070 Msa0165440:intron 20.0%
!! TATATAAAATGATTCTCATG+AGG + chr1_4:46019854-46019873 None:intergenic 20.0%
!!! TTATATAACTTTGAAAGGAA+AGG - chr1_4:46019867-46019886 Msa0165440:intron 20.0%
!! AGAAAATGTCTTTATTCATT+TGG - chr1_4:46019899-46019918 Msa0165440:intron 20.0%
!!! TTTATGTTTTAGTTGAATTG+TGG - chr1_4:46019961-46019980 Msa0165440:intron 20.0%
!!! TTATGTTTTAGTTGAATTGT+GGG - chr1_4:46019962-46019981 Msa0165440:intron 20.0%
!!! CCATAATATTTTAATCAATG+TGG + chr1_4:46020019-46020038 None:intergenic 20.0%
!!! CCACATTGATTAAAATATTA+TGG - chr1_4:46020016-46020035 Msa0165440:intron 20.0%
!!! GTATTTTTTCATTTGGAAAT+AGG - chr1_4:46020390-46020409 Msa0165440:intron 20.0%
!! AGTTTAATAAAATTGAACTG+TGG - chr1_4:46020433-46020452 Msa0165440:intron 20.0%
!!! AAATGTTTTCAAACTAAGTT+TGG + chr1_4:46020496-46020515 None:intergenic 20.0%
!!! CTTAGTTTGAAAACATTTTT+TGG - chr1_4:46020498-46020517 Msa0165440:intron 20.0%
!! TGAAAATATCATATTTAACC+TGG - chr1_4:46020522-46020541 Msa0165440:intron 20.0%
!! TTTATTGTATACAACTATCT+TGG - chr1_4:46020838-46020857 Msa0165440:intron 20.0%
!! TTATTGTATACAACTATCTT+GGG - chr1_4:46020839-46020858 Msa0165440:intron 20.0%
!! TGTGTATATTATAATCTTGT+AGG - chr1_4:46021480-46021499 Msa0165440:intron 20.0%
!! AATGAGATGTAACTTAATAA+AGG + chr1_4:46021757-46021776 None:intergenic 20.0%
!! CTAAACTAAAATTCTGAATT+AGG + chr1_4:46021997-46022016 None:intergenic 20.0%
!!! TATATTTTAGTATGATGTGT+AGG - chr1_4:46022024-46022043 Msa0165440:intron 20.0%
!!! TTTTCATGTTTTATTTGTCT+AGG - chr1_4:46022125-46022144 Msa0165440:intron 20.0%
!!! TTTCATGTTTTATTTGTCTA+GGG - chr1_4:46022126-46022145 Msa0165440:intron 20.0%
!! TAAAATATTGTGAACAAACT+TGG + chr1_4:46022235-46022254 None:intergenic 20.0%
!! ATAATGCATAACTAAATTGA+AGG - chr1_4:46022526-46022545 Msa0165440:intron 20.0%
!! TTAGACCAACAAAAAAAAAA+GGG - chr1_4:46022805-46022824 Msa0165440:intron 20.0%
!!! ATTTTCCCTTTTTTTTTTGT+TGG + chr1_4:46022813-46022832 None:intergenic 20.0%
!!! AGTAAGTTGAAATAAATATC+AGG + chr1_4:46023324-46023343 None:intergenic 20.0%
!! ATTTATTTCAACTTACTACT+AGG - chr1_4:46023327-46023346 Msa0165440:intron 20.0%
!! TTTATTTCAACTTACTACTA+GGG - chr1_4:46023328-46023347 Msa0165440:intron 20.0%
!! GTGAAAAAAAATGCAATATT+TGG - chr1_4:46023813-46023832 Msa0165440:intron 20.0%
!!! CTTTTCACCTTATTTTTTTT+TGG - chr1_4:46024051-46024070 Msa0165440:intron 20.0%
!! CGAAAACAAAAAAAAAAACA+CGG + chr1_4:46024446-46024465 None:intergenic 20.0%
!!! GAAACCAAAACTAAATTTTA+AGG - chr1_4:46024541-46024560 Msa0165440:intron 20.0%
!!! CTATCCTTAAAATTTAGTTT+TGG + chr1_4:46024548-46024567 None:intergenic 20.0%
!!! CAAAACTAAATTTTAAGGAT+AGG - chr1_4:46024546-46024565 Msa0165440:intron 20.0%
!!! CCTTTTTAAATTAATGAGAT+GGG - chr1_4:46024814-46024833 Msa0165440:CDS 20.0%
!!! CTTTTTAAATTAATGAGATG+GGG - chr1_4:46024815-46024834 Msa0165440:CDS 20.0%
!!! TTTTTAAATTAATGAGATGG+GGG - chr1_4:46024816-46024835 Msa0165440:CDS 20.0%
!! ATTCGTATATCAAAATTCTT+AGG + chr1_4:46024909-46024928 None:intergenic 20.0%
!!! TAAGAATTTTGATATACGAA+TGG - chr1_4:46024908-46024927 Msa0165440:five_prime_UTR 20.0%
!! ACATGAATTATATTATGAGT+AGG + chr1_4:46025111-46025130 None:intergenic 20.0%
! TTTGGATCAACTAATCATTT+CGG + chr1_4:46017451-46017470 None:intergenic 25.0%
! AATAGATCGATCTATGAAAA+GGG + chr1_4:46017622-46017641 None:intergenic 25.0%
! AAATAGATCGATCTATGAAA+AGG + chr1_4:46017623-46017642 None:intergenic 25.0%
!! TTTCATAGATCGATCTATTT+TGG - chr1_4:46017623-46017642 Msa0165440:three_prime_UTR 25.0%
! TTCAACGTTAAAAGTTGTTT+GGG + chr1_4:46017651-46017670 None:intergenic 25.0%
! TTTCAACGTTAAAAGTTGTT+TGG + chr1_4:46017652-46017671 None:intergenic 25.0%
! AAGATAATAAAGGGTTATGA+TGG - chr1_4:46017738-46017757 Msa0165440:three_prime_UTR 25.0%
! AACATGACATGCTTAAAAAA+AGG + chr1_4:46017951-46017970 None:intergenic 25.0%
!!! TTTTTTTAGACATCCCAAAA+TGG - chr1_4:46018077-46018096 Msa0165440:intron 25.0%
!!! TTTTAACTAAGATTGTTGTG+TGG - chr1_4:46018127-46018146 Msa0165440:intron 25.0%
! TGAATACTTTGTGTGAAAAA+AGG - chr1_4:46018313-46018332 Msa0165440:intron 25.0%
! TAGAACACTTAATAAAGAGA+TGG - chr1_4:46018793-46018812 Msa0165440:CDS 25.0%
! AGAACACTTAATAAAGAGAT+GGG - chr1_4:46018794-46018813 Msa0165440:CDS 25.0%
!! TAATGAGTTGGATAGAAATA+TGG - chr1_4:46019053-46019072 Msa0165440:intron 25.0%
! ATGGTATATGATAGAACATT+AGG - chr1_4:46019072-46019091 Msa0165440:intron 25.0%
! TGGTATATGATAGAACATTA+GGG - chr1_4:46019073-46019092 Msa0165440:intron 25.0%
! TACAAAATGTTGTCAAATAG+TGG + chr1_4:46019230-46019249 None:intergenic 25.0%
! TGACATCATTATATTAAGCT+AGG - chr1_4:46019348-46019367 Msa0165440:intron 25.0%
!!! TTTTTTCTTCTAGAGTAAAC+TGG - chr1_4:46019592-46019611 Msa0165440:intron 25.0%
!!! ACATGTTTTTTCTTCTTCTT+TGG - chr1_4:46019740-46019759 Msa0165440:intron 25.0%
!!! TGGATAGTATCAATTGATTT+TGG - chr1_4:46019760-46019779 Msa0165440:intron 25.0%
! GTTCAATTATTCAAATGTCT+AGG - chr1_4:46019788-46019807 Msa0165440:intron 25.0%
!! AATCTATTTTGTGTTGAGTT+AGG - chr1_4:46020080-46020099 Msa0165440:intron 25.0%
! TTAATAAAATTGAACTGTGG+TGG - chr1_4:46020436-46020455 Msa0165440:intron 25.0%
! AATCACGCTTATATCAAATT+GGG + chr1_4:46020945-46020964 None:intergenic 25.0%
! TAATCACGCTTATATCAAAT+TGG + chr1_4:46020946-46020965 None:intergenic 25.0%
! TATAGACCAACAAATGTATT+TGG - chr1_4:46022330-46022349 Msa0165440:intron 25.0%
! TGCTGTTAAATTATGAAAGA+TGG - chr1_4:46022355-46022374 Msa0165440:intron 25.0%
! GCTGTTAAATTATGAAAGAT+GGG - chr1_4:46022356-46022375 Msa0165440:intron 25.0%
! TTAAATTATGAAAGATGGGA+GGG - chr1_4:46022360-46022379 Msa0165440:intron 25.0%
! TATTGAATATTCACAAGAAG+TGG + chr1_4:46022697-46022716 None:intergenic 25.0%
! AAAATGAAGAAAAAACACGA+GGG - chr1_4:46022732-46022751 Msa0165440:intron 25.0%
! GTTAGACCAACAAAAAAAAA+AGG - chr1_4:46022804-46022823 Msa0165440:intron 25.0%
!! AGAAGTTAAATTAGTTTCTG+CGG - chr1_4:46023122-46023141 Msa0165440:intron 25.0%
! TATTTATCAGCACAAACATA+TGG - chr1_4:46023874-46023893 Msa0165440:intron 25.0%
!! GATTCCTCTTTTCTATATAA+AGG - chr1_4:46023937-46023956 Msa0165440:intron 25.0%
!!! TTCACCTTATTTTTTTTTGG+TGG - chr1_4:46024054-46024073 Msa0165440:intron 25.0%
! TTGTAAAGCTTACGAAAATA+AGG + chr1_4:46024162-46024181 None:intergenic 25.0%
!!! TTGCAAAATAGAAGTATCAA+AGG + chr1_4:46024392-46024411 None:intergenic 25.0%
!! GCCTTTTTAAATTAATGAGA+TGG - chr1_4:46024813-46024832 Msa0165440:CDS 25.0%
! CCCATCTCATTAATTTAAAA+AGG + chr1_4:46024817-46024836 None:intergenic 25.0%
! GTATATCAAAATTCTTAGGA+TGG + chr1_4:46024905-46024924 None:intergenic 25.0%
! ATCTCATGATTCATTGTAAT+AGG - chr1_4:46025075-46025094 Msa0165440:five_prime_UTR 25.0%
! CGTTAAAGTTGCAATCTTTT+TGG - chr1_4:46017675-46017694 Msa0165440:three_prime_UTR 30.0%
AGGAAGAGAAAAAGAATCAA+GGG - chr1_4:46017702-46017721 Msa0165440:three_prime_UTR 30.0%
TGGTGGAATGAAGATAATAA+AGG - chr1_4:46017728-46017747 Msa0165440:three_prime_UTR 30.0%
GGTGGAATGAAGATAATAAA+GGG - chr1_4:46017729-46017748 Msa0165440:three_prime_UTR 30.0%
! AGTCTAAGTCTTTCCATTTT+GGG + chr1_4:46018093-46018112 None:intergenic 30.0%
! TAGTCTAAGTCTTTCCATTT+TGG + chr1_4:46018094-46018113 None:intergenic 30.0%
TGTATAAACCAGATCAGATT+CGG - chr1_4:46018164-46018183 Msa0165440:intron 30.0%
AATTAGGAAGTCATACAAAC+CGG - chr1_4:46018207-46018226 Msa0165440:intron 30.0%
ACCAATTTCATTAACTTCAC+CGG + chr1_4:46018229-46018248 None:intergenic 30.0%
AAAAAGGTGAAGGAATTAGA+AGG - chr1_4:46018329-46018348 Msa0165440:intron 30.0%
AAAAGGTGAAGGAATTAGAA+GGG - chr1_4:46018330-46018349 Msa0165440:intron 30.0%
GAAACAGAAGATAATTGATG+AGG - chr1_4:46018397-46018416 Msa0165440:intron 30.0%
TTGAATAGCAGAAGCAATAA+TGG - chr1_4:46018440-46018459 Msa0165440:intron 30.0%
TAAAAACTCGACACAACAAA+CGG - chr1_4:46018601-46018620 Msa0165440:intron 30.0%
ACATGATCAATTTCATCTGT+AGG - chr1_4:46018660-46018679 Msa0165440:intron 30.0%
TCTCTACCTAAAAATCAAGT+TGG + chr1_4:46018712-46018731 None:intergenic 30.0%
GAACACTTAATAAAGAGATG+GGG - chr1_4:46018795-46018814 Msa0165440:CDS 30.0%
ATAGCATTAAAGAGAGAGTT+GGG - chr1_4:46018864-46018883 Msa0165440:CDS 30.0%
AGCACCTATTGTATAAAAGA+TGG - chr1_4:46018889-46018908 Msa0165440:CDS 30.0%
ACCTATTGTATAAAAGATGG+TGG - chr1_4:46018892-46018911 Msa0165440:CDS 30.0%
! TCCACCATCTTTTATACAAT+AGG + chr1_4:46018896-46018915 None:intergenic 30.0%
!! TATAAAAGATGGTGGAAACT+AGG - chr1_4:46018900-46018919 Msa0165440:CDS 30.0%
AAACTAGGCTTAGATGATTT+GGG - chr1_4:46018915-46018934 Msa0165440:CDS 30.0%
AGATCTAGAGATTAATGAGT+TGG - chr1_4:46019041-46019060 Msa0165440:intron 30.0%
TTGTAGATAGCTGAAAATAG+TGG - chr1_4:46019170-46019189 Msa0165440:CDS 30.0%
TTGTACTAAATAGCATATCG+CGG - chr1_4:46019245-46019264 Msa0165440:intron 30.0%
! ATCAGTGTTGTTAAATAGCA+CGG + chr1_4:46019319-46019338 None:intergenic 30.0%
TTATATTAAGCTAGGAGATC+AGG - chr1_4:46019356-46019375 Msa0165440:intron 30.0%
AAAAACATCAAATGTTCCGA+GGG + chr1_4:46019406-46019425 None:intergenic 30.0%
AAAAAACATCAAATGTTCCG+AGG + chr1_4:46019407-46019426 None:intergenic 30.0%
TAGAGATCAATGTGTTCTTA+AGG + chr1_4:46019435-46019454 None:intergenic 30.0%
TGTTTCAGACCTAATAATCA+TGG + chr1_4:46019484-46019503 None:intergenic 30.0%
! AGTTGCTTTATGTATGTCTT+AGG - chr1_4:46019649-46019668 Msa0165440:intron 30.0%
! GTTGCTTTATGTATGTCTTA+GGG - chr1_4:46019650-46019669 Msa0165440:intron 30.0%
GACATTTGAATAATTGAACC+AGG + chr1_4:46019787-46019806 None:intergenic 30.0%
TCAACACAAAATAGATTGTG+AGG + chr1_4:46020077-46020096 None:intergenic 30.0%
CCCAATAACATATTTAGAAG+GGG + chr1_4:46020138-46020157 None:intergenic 30.0%
CCCCTTCTAAATATGTTATT+GGG - chr1_4:46020135-46020154 Msa0165440:intron 30.0%
GCCCAATAACATATTTAGAA+GGG + chr1_4:46020139-46020158 None:intergenic 30.0%
TGTCTTAGAGTTTGATCTTT+AGG + chr1_4:46020362-46020381 None:intergenic 30.0%
!! AAAGATCAAACTCTAAGACA+TGG - chr1_4:46020362-46020381 Msa0165440:intron 30.0%
!!! GGCTTGAGTATTTTTTCATT+TGG - chr1_4:46020383-46020402 Msa0165440:intron 30.0%
AATAGGTATTAGTCGAAGTA+TGG - chr1_4:46020407-46020426 Msa0165440:intron 30.0%
CAAAAGTAAATATGGGGTTA+TGG - chr1_4:46020465-46020484 Msa0165440:intron 30.0%
AGTTCATAGTGAACAAAATG+CGG + chr1_4:46020566-46020585 None:intergenic 30.0%
! TTTTGTTCACTATGAACTCA+AGG - chr1_4:46020568-46020587 Msa0165440:intron 30.0%
ATAAAAGCTGTGAATCACTT+CGG - chr1_4:46020649-46020668 Msa0165440:intron 30.0%
AAACAGTTACATAGCAATCA+TGG + chr1_4:46020809-46020828 None:intergenic 30.0%
ATCACGCTTATATCAAATTG+GGG + chr1_4:46020944-46020963 None:intergenic 30.0%
! TTCCACTAGCATTTAAGTTA+TGG - chr1_4:46020988-46021007 Msa0165440:intron 30.0%
TAAGAAAGATGAATCTTGAG+TGG - chr1_4:46021077-46021096 Msa0165440:intron 30.0%
TCTTACGAAAACAATTGACT+TGG - chr1_4:46021241-46021260 Msa0165440:intron 30.0%
! CTTACGAAAACAATTGACTT+GGG - chr1_4:46021242-46021261 Msa0165440:intron 30.0%
!! TTACGAAAACAATTGACTTG+GGG - chr1_4:46021243-46021262 Msa0165440:intron 30.0%
TTACTTGAGAGAATCTATTC+CGG - chr1_4:46021583-46021602 Msa0165440:intron 30.0%
TCATTGTTGTGTATAGTCTT+GGG + chr1_4:46021676-46021695 None:intergenic 30.0%
TTCATTGTTGTGTATAGTCT+TGG + chr1_4:46021677-46021696 None:intergenic 30.0%
TGGTCAACAAGTCTATAAAT+TGG - chr1_4:46021722-46021741 Msa0165440:intron 30.0%
TTCATGTCAATCTAAGTTTG+AGG + chr1_4:46021796-46021815 None:intergenic 30.0%
ACTTAGATTGACATGAATGT+TGG - chr1_4:46021799-46021818 Msa0165440:intron 30.0%
CAATGAAAGGATGAAAACAT+AGG + chr1_4:46021890-46021909 None:intergenic 30.0%
! ACCTTTTTCTCATTGCTTAT+GGG - chr1_4:46021969-46021988 Msa0165440:intron 30.0%
!! TTGTGTTACTGATTTGAGAA+AGG - chr1_4:46022086-46022105 Msa0165440:intron 30.0%
GTTAAATTATGAAAGATGGG+AGG - chr1_4:46022359-46022378 Msa0165440:intron 30.0%
TAAATTATGAAAGATGGGAG+GGG - chr1_4:46022361-46022380 Msa0165440:intron 30.0%
! TTGGATCTATCATTTCCTTT+TGG - chr1_4:46022459-46022478 Msa0165440:intron 30.0%
CTTACTTTGTAAATGCCAAA+AGG + chr1_4:46022477-46022496 None:intergenic 30.0%
! CTTTTGGCATTTACAAAGTA+AGG - chr1_4:46022475-46022494 Msa0165440:intron 30.0%
ATGCATAACTAAATTGAAGG+AGG - chr1_4:46022529-46022548 Msa0165440:intron 30.0%
AAAGGAATTGTATGAGGAAA+GGG + chr1_4:46022569-46022588 None:intergenic 30.0%
TAAAGGAATTGTATGAGGAA+AGG + chr1_4:46022570-46022589 None:intergenic 30.0%
!!! CTCGTGTTTTTTCTTCATTT+TGG + chr1_4:46022733-46022752 None:intergenic 30.0%
CAAAATGAAGAAAAAACACG+AGG - chr1_4:46022731-46022750 Msa0165440:intron 30.0%
CTTGTTCTAACACACAAATT+TGG + chr1_4:46022936-46022955 None:intergenic 30.0%
CAAATTTGTGTGTTAGAACA+AGG - chr1_4:46022934-46022953 Msa0165440:intron 30.0%
TGACTAATAGTTGCAAAAGA+CGG + chr1_4:46022961-46022980 None:intergenic 30.0%
! AACGGTAATTTTGTGTAATC+TGG - chr1_4:46023019-46023038 Msa0165440:intron 30.0%
ATACAGATGCAGTTGAAAAT+TGG - chr1_4:46023082-46023101 Msa0165440:intron 30.0%
! GAAGTTAAATTAGTTTCTGC+GGG - chr1_4:46023123-46023142 Msa0165440:intron 30.0%
TCATAATCTGTATGAAGTTC+AGG + chr1_4:46023698-46023717 None:intergenic 30.0%
GAACTTCATACAGATTATGA+CGG - chr1_4:46023698-46023717 Msa0165440:intron 30.0%
!!! GCATTTTTTTTCACCTTCTT+TGG + chr1_4:46023807-46023826 None:intergenic 30.0%
! TGTTTGTGCTGATAAATATC+TGG + chr1_4:46023872-46023891 None:intergenic 30.0%
AAGAGGAATCATATTCATCA+GGG + chr1_4:46023927-46023946 None:intergenic 30.0%
AAAGAGGAATCATATTCATC+AGG + chr1_4:46023928-46023947 None:intergenic 30.0%
AGGTCCTTTATATAGAAAAG+AGG + chr1_4:46023944-46023963 None:intergenic 30.0%
!!! ACCTTATTTTTTTTTGGTGG+TGG - chr1_4:46024057-46024076 Msa0165440:intron 30.0%
! ACCTTGCATATTTTATGCAT+TGG - chr1_4:46024098-46024117 Msa0165440:intron 30.0%
ACCAATGCATAAAATATGCA+AGG + chr1_4:46024102-46024121 None:intergenic 30.0%
CTTACGAAAATAAGGTGAAA+AGG + chr1_4:46024154-46024173 None:intergenic 30.0%
TCCAGCTAATATACACTTAT+TGG - chr1_4:46024499-46024518 Msa0165440:intron 30.0%
ACCAATAAGTGTATATTAGC+TGG + chr1_4:46024503-46024522 None:intergenic 30.0%
ATGTGAATTTCGATACCATT+CGG + chr1_4:46024576-46024595 None:intergenic 30.0%
TAAATAATAACCAGCACAGA+AGG - chr1_4:46024649-46024668 Msa0165440:intron 30.0%
TATTTGTCAAAGCATGACAA+AGG + chr1_4:46024756-46024775 None:intergenic 30.0%
!! ACAACAAATAGCTTTGACAA+AGG + chr1_4:46024780-46024799 None:intergenic 30.0%
!! TAAAGGAAATTTTTCGGACA+TGG - chr1_4:46024841-46024860 Msa0165440:exon 30.0%
!! AAATTTTTCGGACATGGTTT+TGG - chr1_4:46024847-46024866 Msa0165440:exon 30.0%
!!! GTAACAGAGTTTTAGATTCT+TGG - chr1_4:46024967-46024986 Msa0165440:five_prime_UTR 30.0%
!! AAGAACCTAGGATTTGTTAG+AGG + chr1_4:46017597-46017616 None:intergenic 35.0%
GAGGAAGAGAAAAAGAATCA+AGG - chr1_4:46017701-46017720 Msa0165440:three_prime_UTR 35.0%
AGAAAAAGAATCAAGGGCAA+TGG - chr1_4:46017708-46017727 Msa0165440:three_prime_UTR 35.0%
ATTCAACTTCAATCAAGAGG+AGG - chr1_4:46017778-46017797 Msa0165440:three_prime_UTR 35.0%
GCTTCTCTTTATATCTACTC+TGG - chr1_4:46017892-46017911 Msa0165440:three_prime_UTR 35.0%
TGGAAGAATCGAATCGAATT+AGG - chr1_4:46018191-46018210 Msa0165440:intron 35.0%
ACCGGTGAAGTTAATGAAAT+TGG - chr1_4:46018225-46018244 Msa0165440:intron 35.0%
!! GTAATCAGTTGTTGTTTACG+TGG - chr1_4:46018261-46018280 Msa0165440:intron 35.0%
CTTTGTGTGAAAAAAGGTGA+AGG - chr1_4:46018319-46018338 Msa0165440:intron 35.0%
AAAGGTGAAGGAATTAGAAG+GGG - chr1_4:46018331-46018350 Msa0165440:intron 35.0%
AAAAACTCGACACAACAAAC+GGG - chr1_4:46018602-46018621 Msa0165440:intron 35.0%
CAATTTCATCTGTAGGTGAT+TGG - chr1_4:46018667-46018686 Msa0165440:intron 35.0%
TTGGAAAATTGACAGTTCAC+TGG - chr1_4:46018686-46018705 Msa0165440:intron 35.0%
GATAGCATTAAAGAGAGAGT+TGG - chr1_4:46018863-46018882 Msa0165440:CDS 35.0%
TAGCATTAAAGAGAGAGTTG+GGG - chr1_4:46018865-46018884 Msa0165440:CDS 35.0%
GAAACTAGGCTTAGATGATT+TGG - chr1_4:46018914-46018933 Msa0165440:CDS 35.0%
CACCTATTGATACTGTAGTA+AGG - chr1_4:46018938-46018957 Msa0165440:intron 35.0%
CTCCTTACTACAGTATCAAT+AGG + chr1_4:46018943-46018962 None:intergenic 35.0%
CAAGTCTTAACTCACTAAGT+GGG + chr1_4:46019123-46019142 None:intergenic 35.0%
GTTAAATAGCACGGATATAG+AGG + chr1_4:46019310-46019329 None:intergenic 35.0%
TTAATATGACCATTGACCCT+CGG - chr1_4:46019387-46019406 Msa0165440:intron 35.0%
CAGACCTAATAATCATGGAT+CGG + chr1_4:46019479-46019498 None:intergenic 35.0%
CGGCTACATTAAAATAGAAC+TGG + chr1_4:46019549-46019568 None:intergenic 35.0%
TTAATGTAGCCGTTACTTGT+TGG - chr1_4:46019557-46019576 Msa0165440:intron 35.0%
TAATGTAGCCGTTACTTGTT+GGG - chr1_4:46019558-46019577 Msa0165440:intron 35.0%
!! GTATCAATTGATTTTGGTCC+TGG - chr1_4:46019766-46019785 Msa0165440:intron 35.0%
AATATACCCAGAAGTGGTTT+AGG + chr1_4:46019831-46019850 None:intergenic 35.0%
GCCCCTTCTAAATATGTTAT+TGG - chr1_4:46020134-46020153 Msa0165440:intron 35.0%
GGCCCAATAACATATTTAGA+AGG + chr1_4:46020140-46020159 None:intergenic 35.0%
ATTCAGAGCATGGAAAAAAC+AGG + chr1_4:46020164-46020183 None:intergenic 35.0%
! TAAAATTGAACTGTGGTGGA+AGG - chr1_4:46020440-46020459 Msa0165440:intron 35.0%
! AAAATTGAACTGTGGTGGAA+GGG - chr1_4:46020441-46020460 Msa0165440:intron 35.0%
GAAGGGGCAAAAGTAAATAT+GGG - chr1_4:46020458-46020477 Msa0165440:intron 35.0%
AAGGGGCAAAAGTAAATATG+GGG - chr1_4:46020459-46020478 Msa0165440:intron 35.0%
AAGTAAATATGGGGTTATGG+AGG - chr1_4:46020468-46020487 Msa0165440:intron 35.0%
AACCTGGTATCAGTAATTGA+TGG - chr1_4:46020538-46020557 Msa0165440:intron 35.0%
TACCATCAATTACTGATACC+AGG + chr1_4:46020543-46020562 None:intergenic 35.0%
CTCACAACAGTCTATGATTA+AGG - chr1_4:46020713-46020732 Msa0165440:intron 35.0%
ACAACAGTCTATGATTAAGG+TGG - chr1_4:46020716-46020735 Msa0165440:intron 35.0%
! TCATAGTTTTCCTCCTATTC+AGG + chr1_4:46020767-46020786 None:intergenic 35.0%
CATAGCAATCATGGTAAACA+AGG + chr1_4:46020800-46020819 None:intergenic 35.0%
TCACGCTTATATCAAATTGG+GGG + chr1_4:46020943-46020962 None:intergenic 35.0%
TGCTAGTGGAAGCAAATATA+GGG + chr1_4:46020979-46020998 None:intergenic 35.0%
ATGCTAGTGGAAGCAAATAT+AGG + chr1_4:46020980-46020999 None:intergenic 35.0%
TGCCATAACTTAAATGCTAG+TGG + chr1_4:46020993-46021012 None:intergenic 35.0%
CGTAAGAGCTAAATTCAAGA+TGG + chr1_4:46021117-46021136 None:intergenic 35.0%
!! TACGAAAACAATTGACTTGG+GGG - chr1_4:46021244-46021263 Msa0165440:intron 35.0%
AAGTCCCAAATCAAACCATA+TGG - chr1_4:46021625-46021644 Msa0165440:intron 35.0%
AGTCCCAAATCAAACCATAT+GGG - chr1_4:46021626-46021645 Msa0165440:intron 35.0%
! ACTCCCATATGGTTTGATTT+GGG + chr1_4:46021632-46021651 None:intergenic 35.0%
ATGTCAATCTAAGTTTGAGG+TGG + chr1_4:46021793-46021812 None:intergenic 35.0%
ACAAAGATGGTGAATCACTT+CGG + chr1_4:46021860-46021879 None:intergenic 35.0%
CATAGGATGGAAAACAAAGA+TGG + chr1_4:46021873-46021892 None:intergenic 35.0%
GAAAGGATGAAAACATAGGA+TGG + chr1_4:46021886-46021905 None:intergenic 35.0%
TTACTCTCTCTGTATCTTTC+TGG - chr1_4:46021925-46021944 Msa0165440:intron 35.0%
! CACCTTTTTCTCATTGCTTA+TGG - chr1_4:46021968-46021987 Msa0165440:intron 35.0%
ACCCATAAGCAATGAGAAAA+AGG + chr1_4:46021973-46021992 None:intergenic 35.0%
TCAGTAACACAATGAGCATT+TGG + chr1_4:46022078-46022097 None:intergenic 35.0%
AGCATGCCAAATACATTTGT+TGG + chr1_4:46022339-46022358 None:intergenic 35.0%
AAATTATGAAAGATGGGAGG+GGG - chr1_4:46022362-46022381 Msa0165440:intron 35.0%
AGGAAAGGGAACAATGATAT+GGG + chr1_4:46022555-46022574 None:intergenic 35.0%
CACACTAAAGGAATTGTATG+AGG + chr1_4:46022575-46022594 None:intergenic 35.0%
CATACAATTCCTTTAGTGTG+TGG - chr1_4:46022575-46022594 Msa0165440:intron 35.0%
TGTTGAAATCCACACACTAA+AGG + chr1_4:46022587-46022606 None:intergenic 35.0%
ATCTCAATATTAGCTAACGG+GGG + chr1_4:46022623-46022642 None:intergenic 35.0%
CATCTCAATATTAGCTAACG+GGG + chr1_4:46022624-46022643 None:intergenic 35.0%
CCATCTCAATATTAGCTAAC+GGG + chr1_4:46022625-46022644 None:intergenic 35.0%
GCCATCTCAATATTAGCTAA+CGG + chr1_4:46022626-46022645 None:intergenic 35.0%
TGGTTTACATTTACAGTCAC+CGG - chr1_4:46022760-46022779 Msa0165440:intron 35.0%
TTTCTTTAATGTCACTCGTG+TGG - chr1_4:46022910-46022929 Msa0165440:intron 35.0%
GACTAATAGTTGCAAAAGAC+GGG + chr1_4:46022960-46022979 None:intergenic 35.0%
AGTTTGCAGTGTTATGTGAA+CGG - chr1_4:46023001-46023020 Msa0165440:intron 35.0%
AAATTGGCGCAAGGAAAAAT+TGG - chr1_4:46023098-46023117 Msa0165440:intron 35.0%
! TTAAATTAGTTTCTGCGGGA+GGG - chr1_4:46023127-46023146 Msa0165440:intron 35.0%
!! TTAAAGCTTTGGAGTCTGAT+TGG - chr1_4:46023358-46023377 Msa0165440:intron 35.0%
!! TAAAGCTTTGGAGTCTGATT+GGG - chr1_4:46023359-46023378 Msa0165440:intron 35.0%
GAACATAATGACAAACCTGA+TGG - chr1_4:46023435-46023454 Msa0165440:intron 35.0%
! GAGGATTTAGGTAATCGTTT+TGG - chr1_4:46023462-46023481 Msa0165440:intron 35.0%
! GAAAAGACATCTTGTTGTGA+TGG - chr1_4:46023519-46023538 Msa0165440:intron 35.0%
!! TTGTTGTGATGGTTGTTTTC+TGG - chr1_4:46023530-46023549 Msa0165440:intron 35.0%
CATATTCTAACACACGATAC+AGG + chr1_4:46023567-46023586 None:intergenic 35.0%
CTGTATCGTGTGTTAGAATA+TGG - chr1_4:46023565-46023584 Msa0165440:intron 35.0%
AATCAGCTGCACTATCTTTA+TGG + chr1_4:46023751-46023770 None:intergenic 35.0%
GAATGACATCCAAATTCTGA+CGG + chr1_4:46023848-46023867 None:intergenic 35.0%
TTCTATATAAAGGACCTGCT+TGG - chr1_4:46023947-46023966 Msa0165440:intron 35.0%
GCCACCACCAAAAAAAAATA+AGG + chr1_4:46024061-46024080 None:intergenic 35.0%
!!! TATTTTTTTTTGGTGGTGGC+CGG - chr1_4:46024061-46024080 Msa0165440:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr1_4:46024097-46024116 None:intergenic 35.0%
AAAAAAAAACACGGTCGTGA+AGG + chr1_4:46024437-46024456 None:intergenic 35.0%
CCATTAAGTGTATACTAGCT+AGG + chr1_4:46024470-46024489 None:intergenic 35.0%
CCTAGCTAGTATACACTTAA+TGG - chr1_4:46024467-46024486 Msa0165440:intron 35.0%
CTTATTGGTATTCTGAATCC+AGG - chr1_4:46024514-46024533 Msa0165440:intron 35.0%
TGTGAATTTCGATACCATTC+GGG + chr1_4:46024575-46024594 None:intergenic 35.0%
AATAATCTACAAGGTAGCTC+CGG + chr1_4:46024704-46024723 None:intergenic 35.0%
GCTACCTTGTAGATTATTAC+AGG - chr1_4:46024706-46024725 Msa0165440:CDS 35.0%
AGTGCCTGTAATAATCTACA+AGG + chr1_4:46024713-46024732 None:intergenic 35.0%
! GGGGAGTAAAGGAAATTTTT+CGG - chr1_4:46024835-46024854 Msa0165440:exon 35.0%
GGGGAAAAATCTGATGTTTA+AGG + chr1_4:46024937-46024956 None:intergenic 35.0%
ACTCTGTTACACATGTAGTT+GGG + chr1_4:46024957-46024976 None:intergenic 35.0%
AACTCTGTTACACATGTAGT+TGG + chr1_4:46024958-46024977 None:intergenic 35.0%
!!! CAGAGTTTTAGATTCTTGGA+CGG - chr1_4:46024971-46024990 Msa0165440:five_prime_UTR 35.0%
CTTTCTTTACGTAACTGATG+AGG - chr1_4:46025030-46025049 Msa0165440:five_prime_UTR 35.0%
!! GATTTGTTAGAGGTGGGTTA+AGG + chr1_4:46017587-46017606 None:intergenic 40.0%
!! ACCTAGGATTTGTTAGAGGT+GGG + chr1_4:46017593-46017612 None:intergenic 40.0%
!! AACCTAGGATTTGTTAGAGG+TGG + chr1_4:46017594-46017613 None:intergenic 40.0%
ATGAAAAGGGACAAGAACCT+AGG + chr1_4:46017609-46017628 None:intergenic 40.0%
!! GTTGCAATCTTTTTGGTCTG+AGG - chr1_4:46017682-46017701 Msa0165440:three_prime_UTR 40.0%
AAAAGAATCAAGGGCAATGG+TGG - chr1_4:46017711-46017730 Msa0165440:three_prime_UTR 40.0%
TTATGATGGCAAGAAGTGAG+TGG - chr1_4:46017752-46017771 Msa0165440:three_prime_UTR 40.0%
TATGATGGCAAGAAGTGAGT+GGG - chr1_4:46017753-46017772 Msa0165440:three_prime_UTR 40.0%
GGGATTCAACTTCAATCAAG+AGG - chr1_4:46017775-46017794 Msa0165440:three_prime_UTR 40.0%
!! GTTGTGTGGTTTTTCAGTTG+TGG - chr1_4:46018141-46018160 Msa0165440:intron 40.0%
ACCAGATCAGATTCGGAAAA+TGG - chr1_4:46018171-46018190 Msa0165440:intron 40.0%
! TCCATTTTCCGAATCTGATC+TGG + chr1_4:46018175-46018194 None:intergenic 40.0%
!! GGAGTTTTCAAGCCAAAGTA+CGG - chr1_4:46018352-46018371 Msa0165440:intron 40.0%
! ATCTTCTGTTTCAAGTGCTG+AGG + chr1_4:46018389-46018408 None:intergenic 40.0%
!! AATAATGGATCTCACTCCCA+AGG - chr1_4:46018455-46018474 Msa0165440:intron 40.0%
!!! TGTGTCGAGTTTTTAGCTCA+AGG + chr1_4:46018596-46018615 None:intergenic 40.0%
! CACTGGCCAACTTGATTTTT+AGG - chr1_4:46018703-46018722 Msa0165440:intron 40.0%
! AAGAGATGGGGATGTTTTGT+TGG - chr1_4:46018807-46018826 Msa0165440:CDS 40.0%
!! GGGATGTTTTGTTGGATGTT+TGG - chr1_4:46018815-46018834 Msa0165440:CDS 40.0%
AAGGAGAGTAGATCAGATGT+AGG - chr1_4:46018957-46018976 Msa0165440:intron 40.0%
AGGAGAGTAGATCAGATGTA+GGG - chr1_4:46018958-46018977 Msa0165440:intron 40.0%
TAGGGTAGTCAAATCACTAG+AGG - chr1_4:46018976-46018995 Msa0165440:intron 40.0%
AGTCAAATCACTAGAGGTAG+AGG - chr1_4:46018982-46019001 Msa0165440:intron 40.0%
CTTAACTCACTAAGTGGGAT+CGG + chr1_4:46019118-46019137 None:intergenic 40.0%
CCAAGTCTTAACTCACTAAG+TGG + chr1_4:46019124-46019143 None:intergenic 40.0%
CCACTTAGTGAGTTAAGACT+TGG - chr1_4:46019121-46019140 Msa0165440:intron 40.0%
CTTAGTGAGTTAAGACTTGG+TGG - chr1_4:46019124-46019143 Msa0165440:intron 40.0%
!! TAAGACTTGGTGGTTGTTGT+TGG - chr1_4:46019134-46019153 Msa0165440:CDS 40.0%
ATAGTGGCTATAGCACTGTT+GGG + chr1_4:46019214-46019233 None:intergenic 40.0%
AATAGTGGCTATAGCACTGT+TGG + chr1_4:46019215-46019234 None:intergenic 40.0%
ATAGAGGAGTTGTAGCATAG+CGG + chr1_4:46019294-46019313 None:intergenic 40.0%
! CGTACCGATCCATGATTATT+AGG - chr1_4:46019472-46019491 Msa0165440:CDS 40.0%
TATGACCACCCAACAAGTAA+CGG + chr1_4:46019569-46019588 None:intergenic 40.0%
TGATTGACCTAAACCACTTC+TGG - chr1_4:46019821-46019840 Msa0165440:intron 40.0%
GATTGACCTAAACCACTTCT+GGG - chr1_4:46019822-46019841 Msa0165440:intron 40.0%
ATGAGGAATATACCCAGAAG+TGG + chr1_4:46019837-46019856 None:intergenic 40.0%
AGAGTAGTCCTTATATGGCT+CGG - chr1_4:46020041-46020060 Msa0165440:intron 40.0%
TGAATGTCCAATCCTAAGCA+TGG - chr1_4:46020179-46020198 Msa0165440:intron 40.0%
GAATGTCCAATCCTAAGCAT+GGG - chr1_4:46020180-46020199 Msa0165440:intron 40.0%
AATGTCCAATCCTAAGCATG+GGG - chr1_4:46020181-46020200 Msa0165440:intron 40.0%
ACCATATCTCTAGTCGATGT+GGG + chr1_4:46020274-46020293 None:intergenic 40.0%
AACCATATCTCTAGTCGATG+TGG + chr1_4:46020275-46020294 None:intergenic 40.0%
ACAAATGCAATCGTAAGGTG+CGG + chr1_4:46020325-46020344 None:intergenic 40.0%
CACCTTACGATTGCATTTGT+GGG - chr1_4:46020325-46020344 Msa0165440:intron 40.0%
ACCTTACGATTGCATTTGTG+GGG - chr1_4:46020326-46020345 Msa0165440:intron 40.0%
! AAATTGAACTGTGGTGGAAG+GGG - chr1_4:46020442-46020461 Msa0165440:intron 40.0%
GGAAGGGGCAAAAGTAAATA+TGG - chr1_4:46020457-46020476 Msa0165440:intron 40.0%
CACTATGAACTCAAGGAATG+TGG - chr1_4:46020575-46020594 Msa0165440:intron 40.0%
GGCAATAGTCGATCAATTGA+AGG - chr1_4:46020606-46020625 Msa0165440:intron 40.0%
ACTTCGGAATAGGAAGATGA+CGG - chr1_4:46020665-46020684 Msa0165440:intron 40.0%
CATAGACTGTTGTGAGTGTT+GGG + chr1_4:46020709-46020728 None:intergenic 40.0%
TCATAGACTGTTGTGAGTGT+TGG + chr1_4:46020710-46020729 None:intergenic 40.0%
ACAGTCTATGATTAAGGTGG+TGG - chr1_4:46020719-46020738 Msa0165440:intron 40.0%
CAGTCTATGATTAAGGTGGT+GGG - chr1_4:46020720-46020739 Msa0165440:intron 40.0%
AGAATGAGATGCACCTGAAT+AGG - chr1_4:46020751-46020770 Msa0165440:intron 40.0%
ATACAACTATCTTGGGCTTG+AGG - chr1_4:46020846-46020865 Msa0165440:intron 40.0%
! ACTCCCATGTGGTTTGATTT+GGG - chr1_4:46020882-46020901 Msa0165440:intron 40.0%
!! TGGTTTGATTTGGGCCTTTA+GGG - chr1_4:46020891-46020910 Msa0165440:intron 40.0%
! CATCTATTCTGGACTAGATC+TGG + chr1_4:46020920-46020939 None:intergenic 40.0%
TGCCTCAAGTTTATCCCTAA+GGG + chr1_4:46021147-46021166 None:intergenic 40.0%
TCGATCTTGCATTTGGTATG+TGG - chr1_4:46021385-46021404 Msa0165440:intron 40.0%
CGATCTTGCATTTGGTATGT+GGG - chr1_4:46021386-46021405 Msa0165440:intron 40.0%
GAGTTATCCAGTGGTCTATT+GGG + chr1_4:46021420-46021439 None:intergenic 40.0%
TGAGTTATCCAGTGGTCTAT+TGG + chr1_4:46021421-46021440 None:intergenic 40.0%
ATAACTCAACACAAGGAGCA+AGG - chr1_4:46021433-46021452 Msa0165440:intron 40.0%
TAGACCTTGACTAACCTTGT+CGG - chr1_4:46021506-46021525 Msa0165440:intron 40.0%
TAAAAGGTTATCCACCGACA+AGG + chr1_4:46021523-46021542 None:intergenic 40.0%
AAGCAAGACTGGCATCTAAA+AGG + chr1_4:46021539-46021558 None:intergenic 40.0%
! AATCTATTCCGGACTGGATT+TGG - chr1_4:46021594-46021613 Msa0165440:intron 40.0%
GACTCCCATATGGTTTGATT+TGG + chr1_4:46021633-46021652 None:intergenic 40.0%
GACACGTTACATAGCAATCA+TGG - chr1_4:46021702-46021721 Msa0165440:intron 40.0%
GAGGAAAGGGAACAATGATA+TGG + chr1_4:46022556-46022575 None:intergenic 40.0%
CCCGTTAGCTAATATTGAGA+TGG - chr1_4:46022622-46022641 Msa0165440:intron 40.0%
GAAAAAACACGAGGGTTCAT+TGG - chr1_4:46022740-46022759 Msa0165440:intron 40.0%
CCGAAGGAATATAGATCTTC+CGG + chr1_4:46022782-46022801 None:intergenic 40.0%
CCGGAAGATCTATATTCCTT+CGG - chr1_4:46022779-46022798 Msa0165440:intron 40.0%
CGGAAGATCTATATTCCTTC+GGG - chr1_4:46022780-46022799 Msa0165440:intron 40.0%
! GTTAAATTAGTTTCTGCGGG+AGG - chr1_4:46023126-46023145 Msa0165440:intron 40.0%
TTCTTGAGAAACGGTAGAGT+TGG + chr1_4:46023157-46023176 None:intergenic 40.0%
ATGAAGCTTGTGTGTTTGCA+TGG - chr1_4:46023254-46023273 Msa0165440:intron 40.0%
AGGGATGCTAGTTAAAGCTT+TGG - chr1_4:46023347-46023366 Msa0165440:intron 40.0%
!! TTGCTGAAGAAATTGGCCTT+TGG - chr1_4:46023388-46023407 Msa0165440:intron 40.0%
TCTACATTCACAACCTCAAC+AGG + chr1_4:46023417-46023436 None:intergenic 40.0%
CTGTATCTGATCTCATCTAG+CGG - chr1_4:46023496-46023515 Msa0165440:intron 40.0%
TGTATCTGATCTCATCTAGC+GGG - chr1_4:46023497-46023516 Msa0165440:intron 40.0%
CTGTGTATACATTTCTCCAG+AGG - chr1_4:46023631-46023650 Msa0165440:intron 40.0%
TGTATACATTTCTCCAGAGG+AGG - chr1_4:46023634-46023653 Msa0165440:intron 40.0%
TACAGATTATGACGGTTCTG+CGG - chr1_4:46023706-46023725 Msa0165440:intron 40.0%
GTTTACTGTCCGTCAGAATT+TGG - chr1_4:46023836-46023855 Msa0165440:intron 40.0%
AGCACAAACATATGGAATGC+TGG - chr1_4:46023882-46023901 Msa0165440:intron 40.0%
TATAAAGGACCTGCTTGGAT+TGG - chr1_4:46023952-46023971 Msa0165440:intron 40.0%
GTAAATAAGCCAATCCAAGC+AGG + chr1_4:46023964-46023983 None:intergenic 40.0%
!! GCTTGGATTGGCTTATTTAC+TGG - chr1_4:46023964-46023983 Msa0165440:intron 40.0%
!!! ATTTTTTTTTGGTGGTGGCC+GGG - chr1_4:46024062-46024081 Msa0165440:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr1_4:46024095-46024114 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr1_4:46024096-46024115 None:intergenic 40.0%
ATTGAGCTGTTTATCCAAGC+AGG - chr1_4:46024341-46024360 Msa0165440:intron 40.0%
! TTAAGCATTTTGGACCTGCT+TGG + chr1_4:46024358-46024377 None:intergenic 40.0%
!!! TTAGTTTTGGTTTCTCTGCC+TGG + chr1_4:46024535-46024554 None:intergenic 40.0%
TTAAGGATAGGTATCCCGAA+TGG - chr1_4:46024558-46024577 Msa0165440:intron 40.0%
ATAATAACCAGCACAGAAGG+CGG - chr1_4:46024652-46024671 Msa0165440:intron 40.0%
TAACACGAGCAATCTAAGTC+CGG - chr1_4:46024682-46024701 Msa0165440:CDS 40.0%
TTAATGAGATGGGGGAGTAA+AGG - chr1_4:46024824-46024843 Msa0165440:CDS 40.0%
CTCTGTTACACATGTAGTTG+GGG + chr1_4:46024956-46024975 None:intergenic 40.0%
AGATTCTTGGACGGTGTAAT+CGG - chr1_4:46024980-46024999 Msa0165440:five_prime_UTR 40.0%
TGTTGTTGTCTGAGAGTGGT+GGG + chr1_4:46017480-46017499 None:intergenic 45.0%
! TTGTTGTTGTCTGAGAGTGG+TGG + chr1_4:46017481-46017500 None:intergenic 45.0%
TGTGAATCGAAACGTGGGAT+TGG + chr1_4:46017546-46017565 None:intergenic 45.0%
!! AGAGGTGGGTTAAGGTTACT+GGG + chr1_4:46017579-46017598 None:intergenic 45.0%
!! TAGAGGTGGGTTAAGGTTAC+TGG + chr1_4:46017580-46017599 None:intergenic 45.0%
ACCCACCTCTAACAAATCCT+AGG - chr1_4:46017589-46017608 Msa0165440:three_prime_UTR 45.0%
ATGATGGCAAGAAGTGAGTG+GGG - chr1_4:46017754-46017773 Msa0165440:three_prime_UTR 45.0%
CAACTTCAATCAAGAGGAGG+TGG - chr1_4:46017781-46017800 Msa0165440:three_prime_UTR 45.0%
AATCAAGAGGAGGTGGAAAG+TGG - chr1_4:46017788-46017807 Msa0165440:three_prime_UTR 45.0%
ATCAAGAGGAGGTGGAAAGT+GGG - chr1_4:46017789-46017808 Msa0165440:three_prime_UTR 45.0%
!! GTTTTCAAGCCAAAGTACGG+AGG - chr1_4:46018355-46018374 Msa0165440:intron 45.0%
CAACAAACGGGAATGTGAGA+TGG - chr1_4:46018614-46018633 Msa0165440:intron 45.0%
AAACGGGAATGTGAGATGGT+TGG - chr1_4:46018618-46018637 Msa0165440:intron 45.0%
GAATGTGAGATGGTTGGACT+TGG - chr1_4:46018624-46018643 Msa0165440:intron 45.0%
GTTGGATGTTTGGCAAGACA+CGG - chr1_4:46018825-46018844 Msa0165440:CDS 45.0%
TTGGATGTTTGGCAAGACAC+GGG - chr1_4:46018826-46018845 Msa0165440:CDS 45.0%
ACTAGAGGTAGAGGAAGACT+TGG - chr1_4:46018991-46019010 Msa0165440:intron 45.0%
TCAAATGTTCCGAGGGTCAA+TGG + chr1_4:46019399-46019418 None:intergenic 45.0%
TGGCCAGAGTAGTCCTTATA+TGG - chr1_4:46020036-46020055 Msa0165440:intron 45.0%
GAGCCATATAAGGACTACTC+TGG + chr1_4:46020042-46020061 None:intergenic 45.0%
GAGTAGTCCTTATATGGCTC+GGG - chr1_4:46020042-46020061 Msa0165440:intron 45.0%
ATGACTACCCGAGCCATATA+AGG + chr1_4:46020052-46020071 None:intergenic 45.0%
CAGAGCATGGAAAAAACAGG+TGG + chr1_4:46020161-46020180 None:intergenic 45.0%
AGGATTGGACATTCAGAGCA+TGG + chr1_4:46020174-46020193 None:intergenic 45.0%
!! CATGGGGAGGTGTTGTTATT+GGG - chr1_4:46020197-46020216 Msa0165440:intron 45.0%
! TCTGGAACGTGAACAAATGC+AGG + chr1_4:46020226-46020245 None:intergenic 45.0%
TCACGTTCCAGATGTCCTAT+TGG - chr1_4:46020234-46020253 Msa0165440:intron 45.0%
GATTTCAGCATGCCTCCAAT+AGG + chr1_4:46020252-46020271 None:intergenic 45.0%
! TCCCACATCGACTAGAGATA+TGG - chr1_4:46020270-46020289 Msa0165440:intron 45.0%
GCACCTTACGATTGCATTTG+TGG - chr1_4:46020324-46020343 Msa0165440:intron 45.0%
ACCCCACAAATGCAATCGTA+AGG + chr1_4:46020330-46020349 None:intergenic 45.0%
TCAAGGAATGTGGAGAGAGA+GGG - chr1_4:46020585-46020604 Msa0165440:intron 45.0%
TGAAGGATGAAACTGCACGA+TGG - chr1_4:46020623-46020642 Msa0165440:intron 45.0%
GCTGTGAATCACTTCGGAAT+AGG - chr1_4:46020655-46020674 Msa0165440:intron 45.0%
!!! TGAGTGTTGGGATGTTTTGC+AGG + chr1_4:46020697-46020716 None:intergenic 45.0%
ATGAGATGCACCTGAATAGG+AGG - chr1_4:46020754-46020773 Msa0165440:intron 45.0%
GACTCCCATGTGGTTTGATT+TGG - chr1_4:46020881-46020900 Msa0165440:intron 45.0%
AGGCCCAAATCAAACCACAT+GGG + chr1_4:46020888-46020907 None:intergenic 45.0%
AAGGCCCAAATCAAACCACA+TGG + chr1_4:46020889-46020908 None:intergenic 45.0%
!! GTGGTTTGATTTGGGCCTTT+AGG - chr1_4:46020890-46020909 Msa0165440:intron 45.0%
! ACTAGATCTGGAGTCCCTAA+AGG + chr1_4:46020908-46020927 None:intergenic 45.0%
!! CAAATTGGGGGCATCTATTC+TGG + chr1_4:46020931-46020950 None:intergenic 45.0%
AGCTTCAACTCGTGTGATGT+AGG + chr1_4:46021022-46021041 None:intergenic 45.0%
TCTTACGACTCTCACCCTTA+GGG - chr1_4:46021130-46021149 Msa0165440:intron 45.0%
CACCCTTAGGGATAAACTTG+AGG - chr1_4:46021142-46021161 Msa0165440:intron 45.0%
CTGCCTCAAGTTTATCCCTA+AGG + chr1_4:46021148-46021167 None:intergenic 45.0%
TAGGGATAAACTTGAGGCAG+AGG - chr1_4:46021148-46021167 Msa0165440:intron 45.0%
AATTGTGCATTCTCCCTCTC+AGG - chr1_4:46021204-46021223 Msa0165440:intron 45.0%
CTAAGAGCAACTTCCTGAGA+GGG + chr1_4:46021220-46021239 None:intergenic 45.0%
ACTAAGAGCAACTTCCTGAG+AGG + chr1_4:46021221-46021240 None:intergenic 45.0%
CAAGAAGTCCCAATCAGAGA+GGG + chr1_4:46021278-46021297 None:intergenic 45.0%
TCTCTTGCTTTCGAGGTAAG+GGG + chr1_4:46021346-46021365 None:intergenic 45.0%
GTCTCTTGCTTTCGAGGTAA+GGG + chr1_4:46021347-46021366 None:intergenic 45.0%
TGTCTCTTGCTTTCGAGGTA+AGG + chr1_4:46021348-46021367 None:intergenic 45.0%
GATCTTGTCTCTTGCTTTCG+AGG + chr1_4:46021353-46021372 None:intergenic 45.0%
AATGCAAGATCGAGAGAAGC+TGG + chr1_4:46021378-46021397 None:intergenic 45.0%
GCTTCTCTCGATCTTGCATT+TGG - chr1_4:46021378-46021397 Msa0165440:intron 45.0%
CATTTGGTATGTGGGTCCAA+CGG - chr1_4:46021394-46021413 Msa0165440:intron 45.0%
CCTTGTGTTGAGTTATCCAG+TGG + chr1_4:46021429-46021448 None:intergenic 45.0%
CCACTGGATAACTCAACACA+AGG - chr1_4:46021426-46021445 Msa0165440:intron 45.0%
AGCTGACTGATAAGCAAGAC+TGG + chr1_4:46021550-46021569 None:intergenic 45.0%
TGAGAGAATCTATTCCGGAC+TGG - chr1_4:46021588-46021607 Msa0165440:intron 45.0%
!! CGCAGTGATGGATCAATGAA+AGG + chr1_4:46021903-46021922 None:intergenic 45.0%
GAGAGAGTAAATCGCAGTGA+TGG + chr1_4:46021915-46021934 None:intergenic 45.0%
TGAGCATTTGGACAGTTGTG+AGG + chr1_4:46022066-46022085 None:intergenic 45.0%
GATAGATCCAACAGTCCAGA+TGG + chr1_4:46022450-46022469 None:intergenic 45.0%
CAATATTAGCTAACGGGGGT+TGG + chr1_4:46022619-46022638 None:intergenic 45.0%
! TTTGTTGGTCTAACACCCGA+AGG + chr1_4:46022798-46022817 None:intergenic 45.0%
TGCAGTTGAAAATTGGCGCA+AGG - chr1_4:46023089-46023108 Msa0165440:intron 45.0%
CTCTACCGTTTCTCAAGAAG+AGG - chr1_4:46023158-46023177 Msa0165440:intron 45.0%
ACCTGCCTCTTCTTGAGAAA+CGG + chr1_4:46023166-46023185 None:intergenic 45.0%
TTCTCAAGAAGAGGCAGGTA+TGG - chr1_4:46023167-46023186 Msa0165440:intron 45.0%
! GAAGAGGCAGGTATGGATTA+TGG - chr1_4:46023174-46023193 Msa0165440:intron 45.0%
! GCTGTGCTTGCTGAAGAAAT+TGG - chr1_4:46023381-46023400 Msa0165440:intron 45.0%
CAACCTCAACAGGTATCCAA+AGG + chr1_4:46023407-46023426 None:intergenic 45.0%
! TGAAGTTCAGGTTTGCACTC+AGG + chr1_4:46023686-46023705 None:intergenic 45.0%
! TGATTGCTGTCAAGCTTGCT+TGG - chr1_4:46023766-46023785 Msa0165440:intron 45.0%
CTTCTTTGGCACGTTTAGCA+TGG + chr1_4:46023793-46023812 None:intergenic 45.0%
CATGCTAAACGTGCCAAAGA+AGG - chr1_4:46023791-46023810 Msa0165440:intron 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG - chr1_4:46024063-46024082 Msa0165440:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr1_4:46024125-46024144 None:intergenic 45.0%
TGCACCAGTGATTGTTCCAT+GGG - chr1_4:46024601-46024620 Msa0165440:intron 45.0%
! GTCAAAGTGCGATTTTCGAC+AGG - chr1_4:46024869-46024888 Msa0165440:five_prime_UTR 45.0%
!! AAAATTTCAATATAAAAATT+GGG + chr1_4:46022836-46022855 None:intergenic 5.0%
!! AAAAATTTCAATATAAAAAT+TGG + chr1_4:46022837-46022856 None:intergenic 5.0%
! GAGAGTGGTGGGATTTGGTT+TGG + chr1_4:46017469-46017488 None:intergenic 50.0%
! TGTCTGAGAGTGGTGGGATT+TGG + chr1_4:46017474-46017493 None:intergenic 50.0%
!! CGCTTGTTGTTGTCTGAGAG+TGG + chr1_4:46017484-46017503 None:intergenic 50.0%
CCTCGTGTGAATCGAAACGT+GGG + chr1_4:46017551-46017570 None:intergenic 50.0%
ACCTCGTGTGAATCGAAACG+TGG + chr1_4:46017552-46017571 None:intergenic 50.0%
TGATGGCAAGAAGTGAGTGG+GGG - chr1_4:46017755-46017774 Msa0165440:three_prime_UTR 50.0%
GCAACTCAACCTCCGTACTT+TGG + chr1_4:46018367-46018386 None:intergenic 50.0%
!! TCACTCCCAAGGCATTGCTA+TGG - chr1_4:46018466-46018485 Msa0165440:intron 50.0%
TCGCTCCATAGCAATGCCTT+GGG + chr1_4:46018474-46018493 None:intergenic 50.0%
ACTAAGTGGGATCGGCTACA+TGG + chr1_4:46019110-46019129 None:intergenic 50.0%
ATCGGTACGCAGCAGAAAAG+GGG + chr1_4:46019461-46019480 None:intergenic 50.0%
GATCGGTACGCAGCAGAAAA+GGG + chr1_4:46019462-46019481 None:intergenic 50.0%
! TGTAGCCGTTACTTGTTGGG+TGG - chr1_4:46019561-46019580 Msa0165440:intron 50.0%
AACAACACCTCCCCATGCTT+AGG + chr1_4:46020194-46020213 None:intergenic 50.0%
!! GCATGGGGAGGTGTTGTTAT+TGG - chr1_4:46020196-46020215 Msa0165440:intron 50.0%
CGTTCCAGATGTCCTATTGG+AGG - chr1_4:46020237-46020256 Msa0165440:intron 50.0%
CATGCCTCCAATAGGACATC+TGG + chr1_4:46020244-46020263 None:intergenic 50.0%
CTCAAGGAATGTGGAGAGAG+AGG - chr1_4:46020584-46020603 Msa0165440:intron 50.0%
! TCGGAATAGGAAGATGACGG+CGG - chr1_4:46020668-46020687 Msa0165440:intron 50.0%
CTCTTACGACTCTCACCCTT+AGG - chr1_4:46021129-46021148 Msa0165440:intron 50.0%
CATCTGCTCCCTCTCTGATT+GGG - chr1_4:46021267-46021286 Msa0165440:intron 50.0%
CCAAGAAGTCCCAATCAGAG+AGG + chr1_4:46021279-46021298 None:intergenic 50.0%
CCTCTCTGATTGGGACTTCT+TGG - chr1_4:46021276-46021295 Msa0165440:intron 50.0%
CTCTGATTGGGACTTCTTGG+AGG - chr1_4:46021279-46021298 Msa0165440:intron 50.0%
ACCTTGACTAACCTTGTCGG+TGG - chr1_4:46021509-46021528 Msa0165440:intron 50.0%
! TCCACCGACAAGGTTAGTCA+AGG + chr1_4:46021513-46021532 None:intergenic 50.0%
! ACATTAGGCGGACTCCCATA+TGG + chr1_4:46021643-46021662 None:intergenic 50.0%
ATATGGGAGTCCGCCTAATG+TGG - chr1_4:46021642-46021661 Msa0165440:intron 50.0%
TATGGGAGTCCGCCTAATGT+GGG - chr1_4:46021643-46021662 Msa0165440:intron 50.0%
TTGGGCTTGAGTCCCACATT+AGG + chr1_4:46021658-46021677 None:intergenic 50.0%
ATGGTGAATCACTTCGGCAG+AGG + chr1_4:46021854-46021873 None:intergenic 50.0%
ATGAAAGATGGGAGGGGGTT+TGG - chr1_4:46022367-46022386 Msa0165440:intron 50.0%
GTCCAGATGGAAGCTTCAAC+TGG + chr1_4:46022437-46022456 None:intergenic 50.0%
GAAGCTTCCATCTGGACTGT+TGG - chr1_4:46022440-46022459 Msa0165440:intron 50.0%
TATTAGCTAACGGGGGTTGG+TGG + chr1_4:46022616-46022635 None:intergenic 50.0%
ACCGTTTCTCAAGAAGAGGC+AGG - chr1_4:46023162-46023181 Msa0165440:intron 50.0%
TGGCCTTTGGATACCTGTTG+AGG - chr1_4:46023401-46023420 Msa0165440:intron 50.0%
! TGACAAACCTGATGGTGCAG+AGG - chr1_4:46023443-46023462 Msa0165440:intron 50.0%
CCTAAATCCTCTGCACCATC+AGG + chr1_4:46023453-46023472 None:intergenic 50.0%
! CCTGATGGTGCAGAGGATTT+AGG - chr1_4:46023450-46023469 Msa0165440:intron 50.0%
AGGTTTGCACTCAGGTGGAA+GGG + chr1_4:46023678-46023697 None:intergenic 50.0%
! AGTTCAGGTTTGCACTCAGG+TGG + chr1_4:46023683-46023702 None:intergenic 50.0%
ATGACGGTTCTGCGGTTAGA+TGG - chr1_4:46023714-46023733 Msa0165440:intron 50.0%
TGACGGTTCTGCGGTTAGAT+GGG - chr1_4:46023715-46023734 Msa0165440:intron 50.0%
GGAACAATCACTGGTGCAGA+TGG + chr1_4:46024599-46024618 None:intergenic 50.0%
CTGCACCAGTGATTGTTCCA+TGG - chr1_4:46024600-46024619 Msa0165440:intron 50.0%
TCAAGCAGCAACAACTCCAG+AGG + chr1_4:46024627-46024646 None:intergenic 50.0%
! CAGGCACTCAAAGCTAGCTT+TGG - chr1_4:46024725-46024744 Msa0165440:CDS 50.0%
TTCTTGGACGGTGTAATCGG+AGG - chr1_4:46024983-46025002 Msa0165440:five_prime_UTR 50.0%
CCCACGTTTCGATTCACACG+AGG - chr1_4:46017548-46017567 Msa0165440:three_prime_UTR 55.0%
CTCGCTCCATAGCAATGCCT+TGG + chr1_4:46018475-46018494 None:intergenic 55.0%
!! CAAGGCATTGCTATGGAGCG+AGG - chr1_4:46018473-46018492 Msa0165440:intron 55.0%
GGATCGGTACGCAGCAGAAA+AGG + chr1_4:46019463-46019482 None:intergenic 55.0%
GTCCAATCCTAAGCATGGGG+AGG - chr1_4:46020184-46020203 Msa0165440:intron 55.0%
CACCTCCCCATGCTTAGGAT+TGG + chr1_4:46020189-46020208 None:intergenic 55.0%
GCATCTGCTCCCTCTCTGAT+TGG - chr1_4:46021266-46021285 Msa0165440:intron 55.0%
GAGCGACTCCAAATCCAGTC+CGG + chr1_4:46021605-46021624 None:intergenic 55.0%
GGCTTGAGTCCCACATTAGG+CGG + chr1_4:46021655-46021674 None:intergenic 55.0%
ACTTCGGCAGAGGAAGACAG+TGG + chr1_4:46021844-46021863 None:intergenic 55.0%
CCTGGAAGAACTTCCTCCTC+TGG + chr1_4:46023650-46023669 None:intergenic 55.0%
CCAGAGGAGGAAGTTCTTCC+AGG - chr1_4:46023647-46023666 Msa0165440:intron 55.0%
AGGAGGAAGTTCTTCCAGGC+AGG - chr1_4:46023651-46023670 Msa0165440:intron 55.0%
GGAGGAAGTTCTTCCAGGCA+GGG - chr1_4:46023652-46023671 Msa0165440:intron 55.0%
CAGGTTTGCACTCAGGTGGA+AGG + chr1_4:46023679-46023698 None:intergenic 55.0%
GACGGTTCTGCGGTTAGATG+GGG - chr1_4:46023716-46023735 Msa0165440:intron 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr1_4:46024130-46024149 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr1_4:46024127-46024146 Msa0165440:CDS 55.0%
GAGGCCCATGGAACAATCAC+TGG + chr1_4:46024608-46024627 None:intergenic 55.0%
GTGATTGTTCCATGGGCCTC+TGG - chr1_4:46024608-46024627 Msa0165440:intron 55.0%
AACCAGCACAGAAGGCGGTA+TGG - chr1_4:46024657-46024676 Msa0165440:intron 55.0%
TACCATACCGCCTTCTGTGC+TGG + chr1_4:46024662-46024681 None:intergenic 55.0%
TTGGGCTTGAGGCCCACACT+GGG - chr1_4:46020857-46020876 Msa0165440:intron 60.0%
ACATGGGAGTCCCCCAGTGT+GGG + chr1_4:46020872-46020891 None:intergenic 60.0%
CCAGTGGTCTATTGGGCCGT+TGG + chr1_4:46021413-46021432 None:intergenic 60.0%
CCAACGGCCCAATAGACCAC+TGG - chr1_4:46021410-46021429 Msa0165440:intron 60.0%
TCGGCAGAGGAAGACAGTGG+CGG + chr1_4:46021841-46021860 None:intergenic 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr1_4:46024083-46024102 None:intergenic 60.0%
GCAACAACTCCAGAGGCCCA+TGG + chr1_4:46024620-46024639 None:intergenic 60.0%
CTTGGGCTTGAGGCCCACAC+TGG - chr1_4:46020856-46020875 Msa0165440:intron 65.0%
TGGGCTTGAGGCCCACACTG+GGG - chr1_4:46020858-46020877 Msa0165440:intron 65.0%
CACATGGGAGTCCCCCAGTG+TGG + chr1_4:46020873-46020892 None:intergenic 65.0%
CACACTGGGGGACTCCCATG+TGG - chr1_4:46020871-46020890 Msa0165440:intron 65.0%
GGGCTTGAGGCCCACACTGG+GGG - chr1_4:46020859-46020878 Msa0165440:intron 70.0%
TCAGGTGGAAGGGCCCTGCC+TGG + chr1_4:46023668-46023687 None:intergenic 70.0%
GGTGGCCGGGGTTTGAACCC+CGG - chr1_4:46024075-46024094 Msa0165440:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 46017434 46025170 46017434 ID=Msa0165440;Name=Msa0165440
chr1_4 mRNA 46017434 46025170 46017434 ID=Msa0165440-mRNA-1;Parent=Msa0165440;Name=Msa0165440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=320|0.83|0.85|1|0.83|1|7|524|313
chr1_4 exon 46017434 46018068 46017434 ID=Msa0165440-mRNA-1:exon:13215;Parent=Msa0165440-mRNA-1
chr1_4 exon 46018769 46018953 46018769 ID=Msa0165440-mRNA-1:exon:13214;Parent=Msa0165440-mRNA-1
chr1_4 exon 46019133 46019255 46019133 ID=Msa0165440-mRNA-1:exon:13213;Parent=Msa0165440-mRNA-1
chr1_4 exon 46019421 46019516 46019421 ID=Msa0165440-mRNA-1:exon:13212;Parent=Msa0165440-mRNA-1
chr1_4 exon 46024110 46024269 46024110 ID=Msa0165440-mRNA-1:exon:13211;Parent=Msa0165440-mRNA-1
chr1_4 exon 46024358 46024446 46024358 ID=Msa0165440-mRNA-1:exon:13210;Parent=Msa0165440-mRNA-1
chr1_4 exon 46024673 46025170 46024673 ID=Msa0165440-mRNA-1:exon:13209;Parent=Msa0165440-mRNA-1
chr1_4 five_prime_UTR 46024851 46025170 46024851 ID=Msa0165440-mRNA-1:five_prime_utr;Parent=Msa0165440-mRNA-1
chr1_4 CDS 46024673 46024850 46024673 ID=Msa0165440-mRNA-1:cds;Parent=Msa0165440-mRNA-1
chr1_4 CDS 46024358 46024446 46024358 ID=Msa0165440-mRNA-1:cds;Parent=Msa0165440-mRNA-1
chr1_4 CDS 46024110 46024269 46024110 ID=Msa0165440-mRNA-1:cds;Parent=Msa0165440-mRNA-1
chr1_4 CDS 46019421 46019516 46019421 ID=Msa0165440-mRNA-1:cds;Parent=Msa0165440-mRNA-1
chr1_4 CDS 46019133 46019255 46019133 ID=Msa0165440-mRNA-1:cds;Parent=Msa0165440-mRNA-1
chr1_4 CDS 46018769 46018953 46018769 ID=Msa0165440-mRNA-1:cds;Parent=Msa0165440-mRNA-1
chr1_4 CDS 46017958 46018068 46017958 ID=Msa0165440-mRNA-1:cds;Parent=Msa0165440-mRNA-1
chr1_4 three_prime_UTR 46017434 46017957 46017434 ID=Msa0165440-mRNA-1:three_prime_utr;Parent=Msa0165440-mRNA-1
Gene Sequence

>Msa0165440

ATGATGGCAAGAAGTGAGTGGGGGATTCAACTTCAATCAAGAGGAGGTGGAAAGTGGGTTTGTTCTTACAAAAAAATCACTATCTTAGTTTGTCTTTTCAACATTGCTATTGCTCTCTATTGTCTTCGTTCTCTTTATGCTTCTCTTTATATCTACTCTGGTAGTGTTTCAAGAAACATTGTGGTGTATAAACCAGATCAGATTCGGAAAATGGAAGAATCGAATCGAATTAGGAAGTCATACAAACCGGTGAAGTTAATGAAATTGGTGAAGGAATTAGAAGGGGAGTTTTCAAGCCAAAGTACGGAGGTTGAGTTGCCTCAGCACTTGAAACAGAAGATAATTGATGAGGTCTTGCAGAGACTAGTTAGTTTGAATAGCAGAAGCAATAATGGATCTCACTCCCAAGGCATTGCTATGGAGCGAGATGCAGTTGAAAATTGGCGCAAGGAAAAATTGGAAGAAGTTAAATTAGTTTCTGCGGGAGGGATTTCCAACTCTACCGTTTCTCAAGAAGAGGCAGGGATGCTAGTTAAAGCTTTGGAGTCTGATTGGGCTGTGCTTGCTGAAGAAATTGGCCTTTGGATACCTGTTGAGGTTGTGAATGTAGAACATAATGACAAACCTGATGGTGCAGAGGATTTAGAGGAGGAAGTTCTTCCAGGCAGGGCCCTTCCACCTGAGTGCAAACCTGAACTTCATACAGATTATGACGGTTCTGCGGTTAGATGGGGTCTTACTCACCATAAAGATAGTGCAGCTGATTGCTGTCAAGCTTGCTTGGACCATGCTAAACGTGCCAAAGAAGGTGAAAAAAAATGCAATATTTGGGCAGAGAAACCAAAACTAAATTTTAAGGATAGGTATCCCGAATGGTATCGAAATTCACATCCATCTGCACCAGTGATTGTTCCATGGGCCTCTGGAGTTGTTGCTGCTTGA
Protein sequence

>Msa0165440

MMARSEWGIQLQSRGGGKWVCSYKKITILVCLFNIAIALYCLRSLYASLYIYSGSVSRNIVVYKPDQIRKMEESNRIRKSYKPVKLMKLVKELEGEFSSQSTEVELPQHLKQKIIDEVLQRLVSLNSRSNNGSHSQGIAMERDAVENWRKEKLEEVKLVSAGGISNSTVSQEEAGMLVKALESDWAVLAEEIGLWIPVEVVNVEHNDKPDGAEDLEEEVLPGRALPPECKPELHTDYDGSAVRWGLTHHKDSAADCCQACLDHAKRAKEGEKKCNIWAEKPKLNFKDRYPEWYRNSHPSAPVIVPWASGVVAA*