Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088260 | GAU46608.1 | 83.607 | 183 | 30 | 0 | 2 | 184 | 1 | 183 | 1.15e-100 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088260 | sp|F4I082|LTPG6_ARATH | 43.258 | 178 | 93 | 4 | 8 | 181 | 10 | 183 | 3.57e-43 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088260 | A0A2Z6NQM3 | 83.607 | 183 | 30 | 0 | 2 | 184 | 1 | 183 | 5.48e-101 | 298 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa1088260 | 0.809021 | 2.324458e-50 | -8.615850e-47 |
| Msa0029730 | Msa1088260 | 0.802978 | 4.340609e-49 | -8.615850e-47 |
| Msa0032130 | Msa1088260 | 0.805145 | 1.537796e-49 | -8.615850e-47 |
| Msa0032390 | Msa1088260 | 0.804335 | 2.269524e-49 | -8.615850e-47 |
| Msa0050530 | Msa1088260 | 0.846137 | 2.622778e-59 | -8.615850e-47 |
| Msa0100890 | Msa1088260 | 0.829380 | 5.317087e-55 | -8.615850e-47 |
| Msa0673940 | Msa1088260 | 0.811458 | 6.931482e-51 | -8.615850e-47 |
| Msa0687370 | Msa1088260 | 0.818336 | 2.067377e-52 | -8.615850e-47 |
| Msa0706690 | Msa1088260 | 0.835358 | 1.757644e-56 | -8.615850e-47 |
| Msa0716700 | Msa1088260 | 0.815331 | 9.766358e-52 | -8.615850e-47 |
| Msa0751720 | Msa1088260 | 0.800241 | 1.580933e-48 | -8.615850e-47 |
| Msa0772420 | Msa1088260 | 0.812808 | 3.519051e-51 | -8.615850e-47 |
| Msa0185690 | Msa1088260 | 0.807492 | 4.922007e-50 | -8.615850e-47 |
| Msa0197920 | Msa1088260 | 0.819178 | 1.331342e-52 | -8.615850e-47 |
| Msa0219840 | Msa1088260 | 0.801787 | 7.636751e-49 | -8.615850e-47 |
| Msa0235080 | Msa1088260 | 0.819798 | 9.610350e-53 | -8.615850e-47 |
| Msa0372100 | Msa1088260 | 0.859823 | 3.167894e-63 | -8.615850e-47 |
| Msa0387890 | Msa1088260 | 0.986655 | 1.605923e-167 | -8.615850e-47 |
| Msa0421290 | Msa1088260 | 0.926823 | 2.758793e-91 | -8.615850e-47 |
| Msa0467250 | Msa1088260 | 0.938852 | 3.388416e-99 | -8.615850e-47 |
| Msa0476730 | Msa1088260 | -0.804133 | 2.500233e-49 | -8.615850e-47 |
| Msa0987670 | Msa1088260 | 0.820521 | 6.566387e-53 | -8.615850e-47 |
| Msa1021560 | Msa1088260 | 0.812133 | 4.942429e-51 | -8.615850e-47 |
| Msa1060300 | Msa1088260 | 0.815647 | 8.306295e-52 | -8.615850e-47 |
| Msa1085680 | Msa1088260 | 0.810161 | 1.322559e-50 | -8.615850e-47 |
| Msa1088260 | Msa1105540 | 0.818602 | 1.799621e-52 | -8.615850e-47 |
| Msa1088260 | Msa1105580 | 0.815335 | 9.747459e-52 | -8.615850e-47 |
| Msa1088260 | Msa1128620 | 0.801476 | 8.842972e-49 | -8.615850e-47 |
| Msa1088260 | Msa1148930 | 0.830783 | 2.417350e-55 | -8.615850e-47 |
| Msa1088260 | Msa1186260 | 0.826191 | 3.105890e-54 | -8.615850e-47 |
| Msa1088260 | Msa1227760 | 0.805549 | 1.265146e-49 | -8.615850e-47 |
| Msa1088260 | Msa1343460 | 0.825014 | 5.905532e-54 | -8.615850e-47 |
| Msa1088260 | Msa1362590 | 0.803759 | 2.990297e-49 | -8.615850e-47 |
| Msa1088260 | Msa1368170 | 0.841006 | 6.173622e-58 | -8.615850e-47 |
| Msa1088260 | Msa1371270 | 0.822602 | 2.169635e-53 | -8.615850e-47 |
| Msa1088260 | Msa1385570 | 0.847696 | 9.819191e-60 | -8.615850e-47 |
| Msa1088260 | Msa1398490 | 0.808305 | 3.306287e-50 | -8.615850e-47 |
| Msa1088260 | Msa1430250 | 0.824699 | 7.005374e-54 | -8.615850e-47 |
| Msa0277320 | Msa1088260 | 0.820438 | 6.857377e-53 | -8.615850e-47 |
| Msa0317300 | Msa1088260 | 0.810219 | 1.285064e-50 | -8.615850e-47 |
| Msa0336520 | Msa1088260 | 0.811932 | 5.466678e-51 | -8.615850e-47 |
| Msa0527560 | Msa1088260 | 0.823394 | 1.418367e-53 | -8.615850e-47 |
| Msa0566460 | Msa1088260 | 0.808806 | 2.584096e-50 | -8.615850e-47 |
| Msa0575950 | Msa1088260 | 0.809327 | 1.998710e-50 | -8.615850e-47 |
| Msa0576330 | Msa1088260 | 0.807160 | 5.788188e-50 | -8.615850e-47 |
| Msa0587180 | Msa1088260 | 0.803374 | 3.594450e-49 | -8.615850e-47 |
| Msa0921340 | Msa1088260 | 0.813534 | 2.438210e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088260 | MtrunA17_Chr3g0121381 | 90.270 | 185 | 16 | 1 | 1 | 183 | 1 | 185 | 9.99e-98 | 280 |
| Msa1088260 | MtrunA17_Chr8g0378461 | 50.829 | 181 | 83 | 3 | 9 | 183 | 14 | 194 | 4.29e-66 | 201 |
| Msa1088260 | MtrunA17_Chr8g0356191 | 39.487 | 195 | 105 | 6 | 1 | 182 | 1 | 195 | 8.21e-37 | 126 |
| Msa1088260 | MtrunA17_Chr7g0219391 | 48.000 | 100 | 52 | 0 | 8 | 107 | 12 | 111 | 8.80e-30 | 106 |
| Msa1088260 | MtrunA17_Chr1g0205181 | 33.083 | 133 | 81 | 2 | 12 | 144 | 15 | 139 | 1.42e-13 | 65.1 |
| Msa1088260 | MtrunA17_Chr1g0205201 | 36.667 | 90 | 55 | 2 | 12 | 101 | 10 | 97 | 1.82e-12 | 62.0 |
| Msa1088260 | MtrunA17_Chr1g0205191 | 39.189 | 74 | 42 | 2 | 28 | 101 | 25 | 95 | 8.24e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088260 | AT1G55260.1 | 43.258 | 178 | 93 | 4 | 8 | 181 | 53 | 226 | 7.16e-44 | 145 |
| Msa1088260 | AT1G55260.2 | 43.258 | 178 | 90 | 5 | 8 | 181 | 53 | 223 | 2.29e-43 | 144 |
| Msa1088260 | AT2G44300.1 | 39.796 | 196 | 96 | 5 | 7 | 183 | 11 | 203 | 1.43e-40 | 136 |
| Msa1088260 | AT2G44290.1 | 38.579 | 197 | 96 | 4 | 9 | 183 | 11 | 204 | 1.65e-40 | 136 |
| Msa1088260 | AT3G58550.1 | 38.926 | 149 | 84 | 4 | 4 | 145 | 9 | 157 | 6.72e-30 | 108 |
| Msa1088260 | AT1G03103.1 | 31.915 | 94 | 64 | 0 | 8 | 101 | 2 | 95 | 1.96e-14 | 68.2 |
| Msa1088260 | AT5G09370.2 | 37.736 | 106 | 61 | 2 | 24 | 127 | 21 | 123 | 3.23e-14 | 66.6 |
| Msa1088260 | AT5G09370.3 | 37.600 | 125 | 64 | 5 | 24 | 138 | 21 | 141 | 3.83e-14 | 67.0 |
| Msa1088260 | AT2G48130.2 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa1088260 | AT2G48130.6 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa1088260 | AT2G48130.4 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa1088260 | AT2G48130.5 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa1088260 | AT2G48130.1 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa1088260 | AT2G48130.3 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa1088260 | AT5G09370.1 | 39.175 | 97 | 54 | 2 | 24 | 118 | 21 | 114 | 6.19e-14 | 66.6 |
| Msa1088260 | AT1G73890.1 | 39.189 | 74 | 45 | 0 | 31 | 104 | 30 | 103 | 7.58e-14 | 67.0 |
| Msa1088260 | AT3G22600.1 | 28.188 | 149 | 95 | 5 | 10 | 150 | 6 | 150 | 2.56e-12 | 62.4 |
| Msa1088260 | AT4G14815.1 | 30.000 | 90 | 62 | 1 | 12 | 101 | 7 | 95 | 4.51e-11 | 58.9 |
Find 54 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAATTACCGCTGGAAAT+AGG | 0.158824 | 7_3:-1326277 | None:intergenic |
| TCTTATCAAGGACTTGTTTA+AGG | 0.173161 | 7_3:-1325581 | None:intergenic |
| ACCTTAGCTTCAGGGGATTT+AGG | 0.238114 | 7_3:-1326211 | None:intergenic |
| TGAATTGGATATATTGATAT+TGG | 0.256594 | 7_3:+1326561 | Msa1088260:three_prime_UTR |
| AATAATTACCGCTGGAAATA+GGG | 0.274317 | 7_3:-1326276 | None:intergenic |
| AGAAGACTCATTACTTGAAT+TGG | 0.276229 | 7_3:+1326546 | Msa1088260:three_prime_UTR |
| AAGGAGGTGGCTGGTGGCAG+AGG | 0.280788 | 7_3:+1326436 | Msa1088260:CDS |
| ATTCAACTTGATACCAAGTT+TGG | 0.282616 | 7_3:-1325646 | None:intergenic |
| GATAAACTTGTTACTCTTGC+TGG | 0.316761 | 7_3:+1325501 | Msa1088260:CDS |
| CCTTCAAACACCTTAGCTTC+AGG | 0.355634 | 7_3:-1326220 | None:intergenic |
| TTCAACTTGATACCAAGTTT+GGG | 0.358716 | 7_3:-1325645 | None:intergenic |
| ACACATTCAGTTATATTAGA+TGG | 0.359046 | 7_3:-1325708 | None:intergenic |
| TGGATTGGGAAGGAGGTGGC+TGG | 0.375917 | 7_3:+1326427 | Msa1088260:CDS |
| AGGGGAGGAACTGTTTGTTT+TGG | 0.377595 | 7_3:-1326257 | None:intergenic |
| GAAAAGAGTGGTGGTGGATT+GGG | 0.380896 | 7_3:+1326413 | Msa1088260:CDS |
| TGCATTATTATTTCTACTGT+TGG | 0.388007 | 7_3:+1325431 | Msa1088260:CDS |
| TTATTATTTCTACTGTTGGC+TGG | 0.403176 | 7_3:+1325435 | Msa1088260:CDS |
| CTTATCAAGGACTTGTTTAA+GGG | 0.407090 | 7_3:-1325580 | None:intergenic |
| GATGGTATGTGACAAGCGTT+TGG | 0.413443 | 7_3:-1325690 | None:intergenic |
| TGGATATATTGATATTGGTT+TGG | 0.429814 | 7_3:+1326566 | Msa1088260:three_prime_UTR |
| GGAAAAGAGTGGTGGTGGAT+TGG | 0.435272 | 7_3:+1326412 | Msa1088260:CDS |
| GCTAAGGTGTTTGAAGGACT+TGG | 0.437073 | 7_3:+1326226 | Msa1088260:CDS |
| GAGGTGGCTGGTGGCAGAGG+TGG | 0.447551 | 7_3:+1326439 | Msa1088260:CDS |
| AAGTGAGATATGAAAAGAAA+TGG | 0.450601 | 7_3:-1326476 | None:intergenic |
| GGAAGTACAACAATCTATAG+TGG | 0.456166 | 7_3:-1325559 | None:intergenic |
| CTTCAAACACCTTAGCTTCA+GGG | 0.472455 | 7_3:-1326219 | None:intergenic |
| ACCTAAATCCCCTGAAGCTA+AGG | 0.474094 | 7_3:+1326210 | Msa1088260:CDS |
| CCTGAAGCTAAGGTGTTTGA+AGG | 0.476875 | 7_3:+1326220 | Msa1088260:CDS |
| GATCGCAATGACCCCAAACT+TGG | 0.492547 | 7_3:+1325633 | Msa1088260:CDS |
| GTGGTGGATTGGGAAGGAGG+TGG | 0.495091 | 7_3:+1326423 | Msa1088260:CDS |
| GTGGTGGTGGATTGGGAAGG+AGG | 0.496077 | 7_3:+1326420 | Msa1088260:CDS |
| TCTGAGGAAAAGAGTGGTGG+TGG | 0.499326 | 7_3:+1326407 | Msa1088260:CDS |
| TGTTTAAGGTTCTGCTGAGA+GGG | 0.503753 | 7_3:+1326370 | Msa1088260:intron |
| GAAGTACAACAATCTATAGT+GGG | 0.507467 | 7_3:-1325558 | None:intergenic |
| ATTGGGAAGGAGGTGGCTGG+TGG | 0.530641 | 7_3:+1326430 | Msa1088260:CDS |
| TCAAACTTGAACTTCAAGCT+AGG | 0.546383 | 7_3:-1326505 | None:intergenic |
| TTCAAACACCTTAGCTTCAG+GGG | 0.554009 | 7_3:-1326218 | None:intergenic |
| ATAATTACCGCTGGAAATAG+GGG | 0.565206 | 7_3:-1326275 | None:intergenic |
| GGTTGTCTTCCATACGTTGG+TGG | 0.578596 | 7_3:+1325522 | Msa1088260:CDS |
| GCTGGTTGTCTTCCATACGT+TGG | 0.583066 | 7_3:+1325519 | Msa1088260:CDS |
| TTGGCACTACCACCAACGTA+TGG | 0.586024 | 7_3:-1325531 | None:intergenic |
| TGGAAGCTGTACAGCAAGAG+TGG | 0.593369 | 7_3:-1325670 | None:intergenic |
| TCAACTTGATACCAAGTTTG+GGG | 0.608436 | 7_3:-1325644 | None:intergenic |
| ATGTTTAAGGTTCTGCTGAG+AGG | 0.614875 | 7_3:+1326369 | Msa1088260:intron |
| AGAGTGGTGGTGGATTGGGA+AGG | 0.615185 | 7_3:+1326417 | Msa1088260:CDS |
| GGGATCAAGCTCAAGTTCTG+AGG | 0.620498 | 7_3:+1326391 | Msa1088260:CDS |
| GGTCATTGCGATCTTTGATG+AGG | 0.621163 | 7_3:-1325623 | None:intergenic |
| GTTTAAGGTTCTGCTGAGAG+GGG | 0.633464 | 7_3:+1326371 | Msa1088260:intron |
| AAGTACAACAATCTATAGTG+GGG | 0.642782 | 7_3:-1325557 | None:intergenic |
| AGTTCCTCCCCTATTTCCAG+CGG | 0.660557 | 7_3:+1326268 | Msa1088260:CDS |
| ATTACCGCTGGAAATAGGGG+AGG | 0.669828 | 7_3:-1326272 | None:intergenic |
| TCAAGTTCTGAGGAAAAGAG+TGG | 0.677014 | 7_3:+1326401 | Msa1088260:CDS |
| AGTACAACAATCTATAGTGG+GGG | 0.691483 | 7_3:-1325556 | None:intergenic |
| AGTTCTGAGGAAAAGAGTGG+TGG | 0.693229 | 7_3:+1326404 | Msa1088260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGAGAATTTTTTTTTGT+TGG | + | chr7_3:1326069-1326088 | Msa1088260:intron | 15.0% |
| !!! | TAATGAGAATTTTTTTTTGT+TGG | + | chr7_3:1326069-1326088 | Msa1088260:intron | 15.0% |
| !!! | TTAGTTTGCTTTATGTATTA+AGG | + | chr7_3:1325772-1325791 | Msa1088260:intron | 20.0% |
| !!! | TAGTTTGCTTTATGTATTAA+GGG | + | chr7_3:1325773-1325792 | Msa1088260:intron | 20.0% |
| !! | ATATAAATAAGGCTTAATCA+TGG | + | chr7_3:1325952-1325971 | Msa1088260:intron | 20.0% |
| !! | AAAATTATAATAATTACCGC+TGG | - | chr7_3:1326287-1326306 | None:intergenic | 20.0% |
| !! | TGAATTGGATATATTGATAT+TGG | + | chr7_3:1326561-1326580 | Msa1088260:three_prime_UTR | 20.0% |
| !!! | TTAGTTTGCTTTATGTATTA+AGG | + | chr7_3:1325772-1325791 | Msa1088260:intron | 20.0% |
| !!! | TAGTTTGCTTTATGTATTAA+GGG | + | chr7_3:1325773-1325792 | Msa1088260:intron | 20.0% |
| !! | ATATAAATAAGGCTTAATCA+TGG | + | chr7_3:1325952-1325971 | Msa1088260:intron | 20.0% |
| !! | AAAATTATAATAATTACCGC+TGG | - | chr7_3:1326287-1326306 | None:intergenic | 20.0% |
| !! | TGAATTGGATATATTGATAT+TGG | + | chr7_3:1326561-1326580 | Msa1088260:three_prime_UTR | 20.0% |
| !!! | TGCATTATTATTTCTACTGT+TGG | + | chr7_3:1325431-1325450 | Msa1088260:CDS | 25.0% |
| ! | ACACATTCAGTTATATTAGA+TGG | - | chr7_3:1325711-1325730 | None:intergenic | 25.0% |
| ! | TCTAATATAACTGAATGTGT+AGG | + | chr7_3:1325711-1325730 | Msa1088260:intron | 25.0% |
| !!! | CACTTACTTTTGAAGATTAT+TGG | - | chr7_3:1325983-1326002 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTG+AGG | + | chr7_3:1325983-1326002 | Msa1088260:intron | 25.0% |
| !!! | GAGAATTTTTTTTTGTTGGT+CGG | + | chr7_3:1326073-1326092 | Msa1088260:intron | 25.0% |
| ! | AGAACCTTAAACATTATTAG+AGG | - | chr7_3:1326363-1326382 | None:intergenic | 25.0% |
| ! | AAGTGAGATATGAAAAGAAA+TGG | - | chr7_3:1326479-1326498 | None:intergenic | 25.0% |
| !! | TGGATATATTGATATTGGTT+TGG | + | chr7_3:1326566-1326585 | Msa1088260:three_prime_UTR | 25.0% |
| ! | CTCAGAAAAATATAGGAATT+GGG | - | chr7_3:1326640-1326659 | None:intergenic | 25.0% |
| !! | GAATTTGCTCAGAAAAATAT+AGG | - | chr7_3:1326647-1326666 | None:intergenic | 25.0% |
| !!! | TGCATTATTATTTCTACTGT+TGG | + | chr7_3:1325431-1325450 | Msa1088260:CDS | 25.0% |
| ! | ACACATTCAGTTATATTAGA+TGG | - | chr7_3:1325711-1325730 | None:intergenic | 25.0% |
| ! | TCTAATATAACTGAATGTGT+AGG | + | chr7_3:1325711-1325730 | Msa1088260:intron | 25.0% |
| !!! | CACTTACTTTTGAAGATTAT+TGG | - | chr7_3:1325983-1326002 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTG+AGG | + | chr7_3:1325983-1326002 | Msa1088260:intron | 25.0% |
| !!! | GAGAATTTTTTTTTGTTGGT+CGG | + | chr7_3:1326073-1326092 | Msa1088260:intron | 25.0% |
| ! | AGAACCTTAAACATTATTAG+AGG | - | chr7_3:1326363-1326382 | None:intergenic | 25.0% |
| ! | AAGTGAGATATGAAAAGAAA+TGG | - | chr7_3:1326479-1326498 | None:intergenic | 25.0% |
| !! | TGGATATATTGATATTGGTT+TGG | + | chr7_3:1326566-1326585 | Msa1088260:three_prime_UTR | 25.0% |
| ! | CTCAGAAAAATATAGGAATT+GGG | - | chr7_3:1326640-1326659 | None:intergenic | 25.0% |
| !! | GAATTTGCTCAGAAAAATAT+AGG | - | chr7_3:1326647-1326666 | None:intergenic | 25.0% |
| ! | TAATGCAGTTACACTTTTGT+TGG | - | chr7_3:1325418-1325437 | None:intergenic | 30.0% |
| !! | TTATTATTTCTACTGTTGGC+TGG | + | chr7_3:1325435-1325454 | Msa1088260:CDS | 30.0% |
| AAGTACAACAATCTATAGTG+GGG | - | chr7_3:1325560-1325579 | None:intergenic | 30.0% | |
| GAAGTACAACAATCTATAGT+GGG | - | chr7_3:1325561-1325580 | None:intergenic | 30.0% | |
| ! | CTTATCAAGGACTTGTTTAA+GGG | - | chr7_3:1325583-1325602 | None:intergenic | 30.0% |
| ! | TCTTATCAAGGACTTGTTTA+AGG | - | chr7_3:1325584-1325603 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTGGTCTTATCA+AGG | - | chr7_3:1325596-1325615 | None:intergenic | 30.0% |
| TTCAACTTGATACCAAGTTT+GGG | - | chr7_3:1325648-1325667 | None:intergenic | 30.0% | |
| ATTCAACTTGATACCAAGTT+TGG | - | chr7_3:1325649-1325668 | None:intergenic | 30.0% | |
| CATATGTATATAGTCCAATC+AGG | - | chr7_3:1325799-1325818 | None:intergenic | 30.0% | |
| !! | ACTTTTGAAGATTATTGGAC+CGG | - | chr7_3:1325978-1325997 | None:intergenic | 30.0% |
| !! | ACATTCCATTGAGTTGAATT+AGG | - | chr7_3:1326145-1326164 | None:intergenic | 30.0% |
| AATAATTACCGCTGGAAATA+GGG | - | chr7_3:1326279-1326298 | None:intergenic | 30.0% | |
| TAATAATTACCGCTGGAAAT+AGG | - | chr7_3:1326280-1326299 | None:intergenic | 30.0% | |
| TGTGCCTCTAATAATGTTTA+AGG | + | chr7_3:1326356-1326375 | Msa1088260:intron | 30.0% | |
| AGAAGACTCATTACTTGAAT+TGG | + | chr7_3:1326546-1326565 | Msa1088260:three_prime_UTR | 30.0% | |
| GCTCAGAAAAATATAGGAAT+TGG | - | chr7_3:1326641-1326660 | None:intergenic | 30.0% | |
| ! | TAATGCAGTTACACTTTTGT+TGG | - | chr7_3:1325418-1325437 | None:intergenic | 30.0% |
| !! | TTATTATTTCTACTGTTGGC+TGG | + | chr7_3:1325435-1325454 | Msa1088260:CDS | 30.0% |
| AAGTACAACAATCTATAGTG+GGG | - | chr7_3:1325560-1325579 | None:intergenic | 30.0% | |
| GAAGTACAACAATCTATAGT+GGG | - | chr7_3:1325561-1325580 | None:intergenic | 30.0% | |
| ! | CTTATCAAGGACTTGTTTAA+GGG | - | chr7_3:1325583-1325602 | None:intergenic | 30.0% |
| ! | TCTTATCAAGGACTTGTTTA+AGG | - | chr7_3:1325584-1325603 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTGGTCTTATCA+AGG | - | chr7_3:1325596-1325615 | None:intergenic | 30.0% |
| TTCAACTTGATACCAAGTTT+GGG | - | chr7_3:1325648-1325667 | None:intergenic | 30.0% | |
| ATTCAACTTGATACCAAGTT+TGG | - | chr7_3:1325649-1325668 | None:intergenic | 30.0% | |
| CATATGTATATAGTCCAATC+AGG | - | chr7_3:1325799-1325818 | None:intergenic | 30.0% | |
| !! | ACTTTTGAAGATTATTGGAC+CGG | - | chr7_3:1325978-1325997 | None:intergenic | 30.0% |
| !! | ACATTCCATTGAGTTGAATT+AGG | - | chr7_3:1326145-1326164 | None:intergenic | 30.0% |
| AATAATTACCGCTGGAAATA+GGG | - | chr7_3:1326279-1326298 | None:intergenic | 30.0% | |
| TAATAATTACCGCTGGAAAT+AGG | - | chr7_3:1326280-1326299 | None:intergenic | 30.0% | |
| TGTGCCTCTAATAATGTTTA+AGG | + | chr7_3:1326356-1326375 | Msa1088260:intron | 30.0% | |
| AGAAGACTCATTACTTGAAT+TGG | + | chr7_3:1326546-1326565 | Msa1088260:three_prime_UTR | 30.0% | |
| GCTCAGAAAAATATAGGAAT+TGG | - | chr7_3:1326641-1326660 | None:intergenic | 30.0% | |
| !! | GATAAACTTGTTACTCTTGC+TGG | + | chr7_3:1325501-1325520 | Msa1088260:CDS | 35.0% |
| AGTACAACAATCTATAGTGG+GGG | - | chr7_3:1325559-1325578 | None:intergenic | 35.0% | |
| ! | GGAAGTACAACAATCTATAG+TGG | - | chr7_3:1325562-1325581 | None:intergenic | 35.0% |
| !!! | GAGGATACAGATGCATTTTT+TGG | - | chr7_3:1325607-1325626 | None:intergenic | 35.0% |
| TCAACTTGATACCAAGTTTG+GGG | - | chr7_3:1325647-1325666 | None:intergenic | 35.0% | |
| TTATGTATTAAGGGCCTGAT+TGG | + | chr7_3:1325782-1325801 | Msa1088260:intron | 35.0% | |
| AAATAAGGCTTAATCATGGC+CGG | + | chr7_3:1325956-1325975 | Msa1088260:intron | 35.0% | |
| GAGGAGACATATATTGAACT+TGG | - | chr7_3:1326016-1326035 | None:intergenic | 35.0% | |
| AATGTCTCATGTGACAAAAG+AGG | - | chr7_3:1326035-1326054 | None:intergenic | 35.0% | |
| ATAATTACCGCTGGAAATAG+GGG | - | chr7_3:1326278-1326297 | None:intergenic | 35.0% | |
| TCAAACTTGAACTTCAAGCT+AGG | - | chr7_3:1326508-1326527 | None:intergenic | 35.0% | |
| !! | GATAAACTTGTTACTCTTGC+TGG | + | chr7_3:1325501-1325520 | Msa1088260:CDS | 35.0% |
| AGTACAACAATCTATAGTGG+GGG | - | chr7_3:1325559-1325578 | None:intergenic | 35.0% | |
| ! | GGAAGTACAACAATCTATAG+TGG | - | chr7_3:1325562-1325581 | None:intergenic | 35.0% |
| !!! | GAGGATACAGATGCATTTTT+TGG | - | chr7_3:1325607-1325626 | None:intergenic | 35.0% |
| TCAACTTGATACCAAGTTTG+GGG | - | chr7_3:1325647-1325666 | None:intergenic | 35.0% | |
| TTATGTATTAAGGGCCTGAT+TGG | + | chr7_3:1325782-1325801 | Msa1088260:intron | 35.0% | |
| AAATAAGGCTTAATCATGGC+CGG | + | chr7_3:1325956-1325975 | Msa1088260:intron | 35.0% | |
| GAGGAGACATATATTGAACT+TGG | - | chr7_3:1326016-1326035 | None:intergenic | 35.0% | |
| AATGTCTCATGTGACAAAAG+AGG | - | chr7_3:1326035-1326054 | None:intergenic | 35.0% | |
| ATAATTACCGCTGGAAATAG+GGG | - | chr7_3:1326278-1326297 | None:intergenic | 35.0% | |
| TCAAACTTGAACTTCAAGCT+AGG | - | chr7_3:1326508-1326527 | None:intergenic | 35.0% | |
| ! | ACAATCTATAGTGGGGGTAT+TGG | - | chr7_3:1325553-1325572 | None:intergenic | 40.0% |
| !! | TAGTAGCTTTACTTTTGCGC+CGG | + | chr7_3:1326112-1326131 | Msa1088260:intron | 40.0% |
| !! | ATTGAGTTGAATTAGGCACG+GGG | - | chr7_3:1326138-1326157 | None:intergenic | 40.0% |
| !! | CATTGAGTTGAATTAGGCAC+GGG | - | chr7_3:1326139-1326158 | None:intergenic | 40.0% |
| !! | CCATTGAGTTGAATTAGGCA+CGG | - | chr7_3:1326140-1326159 | None:intergenic | 40.0% |
| GGTGACAAATGTAGAAGATC+TGG | - | chr7_3:1326193-1326212 | None:intergenic | 40.0% | |
| TTCAAACACCTTAGCTTCAG+GGG | - | chr7_3:1326221-1326240 | None:intergenic | 40.0% | |
| CTTCAAACACCTTAGCTTCA+GGG | - | chr7_3:1326222-1326241 | None:intergenic | 40.0% | |
| ! | ATGTTTAAGGTTCTGCTGAG+AGG | + | chr7_3:1326369-1326388 | Msa1088260:intron | 40.0% |
| ! | TGTTTAAGGTTCTGCTGAGA+GGG | + | chr7_3:1326370-1326389 | Msa1088260:intron | 40.0% |
| !! | TCAAGTTCTGAGGAAAAGAG+TGG | + | chr7_3:1326401-1326420 | Msa1088260:CDS | 40.0% |
| ! | ACAATCTATAGTGGGGGTAT+TGG | - | chr7_3:1325553-1325572 | None:intergenic | 40.0% |
| !! | TAGTAGCTTTACTTTTGCGC+CGG | + | chr7_3:1326112-1326131 | Msa1088260:intron | 40.0% |
| !! | ATTGAGTTGAATTAGGCACG+GGG | - | chr7_3:1326138-1326157 | None:intergenic | 40.0% |
| !! | CATTGAGTTGAATTAGGCAC+GGG | - | chr7_3:1326139-1326158 | None:intergenic | 40.0% |
| !! | CCATTGAGTTGAATTAGGCA+CGG | - | chr7_3:1326140-1326159 | None:intergenic | 40.0% |
| GGTGACAAATGTAGAAGATC+TGG | - | chr7_3:1326193-1326212 | None:intergenic | 40.0% | |
| TTCAAACACCTTAGCTTCAG+GGG | - | chr7_3:1326221-1326240 | None:intergenic | 40.0% | |
| CTTCAAACACCTTAGCTTCA+GGG | - | chr7_3:1326222-1326241 | None:intergenic | 40.0% | |
| ! | ATGTTTAAGGTTCTGCTGAG+AGG | + | chr7_3:1326369-1326388 | Msa1088260:intron | 40.0% |
| ! | TGTTTAAGGTTCTGCTGAGA+GGG | + | chr7_3:1326370-1326389 | Msa1088260:intron | 40.0% |
| !! | TCAAGTTCTGAGGAAAAGAG+TGG | + | chr7_3:1326401-1326420 | Msa1088260:CDS | 40.0% |
| GGTCATTGCGATCTTTGATG+AGG | - | chr7_3:1325626-1325645 | None:intergenic | 45.0% | |
| GATGGTATGTGACAAGCGTT+TGG | - | chr7_3:1325693-1325712 | None:intergenic | 45.0% | |
| !! | GCTACTAAAGCCGTCGTTTT+TGG | - | chr7_3:1326099-1326118 | None:intergenic | 45.0% |
| CCGTGCCTAATTCAACTCAA+TGG | + | chr7_3:1326137-1326156 | Msa1088260:intron | 45.0% | |
| ACCTAAATCCCCTGAAGCTA+AGG | + | chr7_3:1326210-1326229 | Msa1088260:CDS | 45.0% | |
| ACCTTAGCTTCAGGGGATTT+AGG | - | chr7_3:1326214-1326233 | None:intergenic | 45.0% | |
| CCTTCAAACACCTTAGCTTC+AGG | - | chr7_3:1326223-1326242 | None:intergenic | 45.0% | |
| ! | CCTGAAGCTAAGGTGTTTGA+AGG | + | chr7_3:1326220-1326239 | Msa1088260:CDS | 45.0% |
| ! | GCTAAGGTGTTTGAAGGACT+TGG | + | chr7_3:1326226-1326245 | Msa1088260:CDS | 45.0% |
| ! | AGGGGAGGAACTGTTTGTTT+TGG | - | chr7_3:1326260-1326279 | None:intergenic | 45.0% |
| ! | GTTTAAGGTTCTGCTGAGAG+GGG | + | chr7_3:1326371-1326390 | Msa1088260:intron | 45.0% |
| !! | AGTTCTGAGGAAAAGAGTGG+TGG | + | chr7_3:1326404-1326423 | Msa1088260:CDS | 45.0% |
| !! | GAAAAGAGTGGTGGTGGATT+GGG | + | chr7_3:1326413-1326432 | Msa1088260:CDS | 45.0% |
| GGTCATTGCGATCTTTGATG+AGG | - | chr7_3:1325626-1325645 | None:intergenic | 45.0% | |
| GATGGTATGTGACAAGCGTT+TGG | - | chr7_3:1325693-1325712 | None:intergenic | 45.0% | |
| !! | GCTACTAAAGCCGTCGTTTT+TGG | - | chr7_3:1326099-1326118 | None:intergenic | 45.0% |
| CCGTGCCTAATTCAACTCAA+TGG | + | chr7_3:1326137-1326156 | Msa1088260:intron | 45.0% | |
| ACCTAAATCCCCTGAAGCTA+AGG | + | chr7_3:1326210-1326229 | Msa1088260:CDS | 45.0% | |
| ACCTTAGCTTCAGGGGATTT+AGG | - | chr7_3:1326214-1326233 | None:intergenic | 45.0% | |
| CCTTCAAACACCTTAGCTTC+AGG | - | chr7_3:1326223-1326242 | None:intergenic | 45.0% | |
| ! | CCTGAAGCTAAGGTGTTTGA+AGG | + | chr7_3:1326220-1326239 | Msa1088260:CDS | 45.0% |
| ! | GCTAAGGTGTTTGAAGGACT+TGG | + | chr7_3:1326226-1326245 | Msa1088260:CDS | 45.0% |
| ! | AGGGGAGGAACTGTTTGTTT+TGG | - | chr7_3:1326260-1326279 | None:intergenic | 45.0% |
| ! | GTTTAAGGTTCTGCTGAGAG+GGG | + | chr7_3:1326371-1326390 | Msa1088260:intron | 45.0% |
| !! | AGTTCTGAGGAAAAGAGTGG+TGG | + | chr7_3:1326404-1326423 | Msa1088260:CDS | 45.0% |
| !! | GAAAAGAGTGGTGGTGGATT+GGG | + | chr7_3:1326413-1326432 | Msa1088260:CDS | 45.0% |
| !! | TTAAAATGTTTATATAAATA+AGG | + | chr7_3:1325941-1325960 | Msa1088260:intron | 5.0% |
| !! | TTAAAATGTTTATATAAATA+AGG | + | chr7_3:1325941-1325960 | Msa1088260:intron | 5.0% |
| GCTGGTTGTCTTCCATACGT+TGG | + | chr7_3:1325519-1325538 | Msa1088260:CDS | 50.0% | |
| GGTTGTCTTCCATACGTTGG+TGG | + | chr7_3:1325522-1325541 | Msa1088260:CDS | 50.0% | |
| TTGGCACTACCACCAACGTA+TGG | - | chr7_3:1325534-1325553 | None:intergenic | 50.0% | |
| GATCGCAATGACCCCAAACT+TGG | + | chr7_3:1325633-1325652 | Msa1088260:CDS | 50.0% | |
| TGGAAGCTGTACAGCAAGAG+TGG | - | chr7_3:1325673-1325692 | None:intergenic | 50.0% | |
| TGTTGGTCGGCCAAAAACGA+CGG | + | chr7_3:1326086-1326105 | Msa1088260:intron | 50.0% | |
| AGTTCCTCCCCTATTTCCAG+CGG | + | chr7_3:1326268-1326287 | Msa1088260:CDS | 50.0% | |
| ATTACCGCTGGAAATAGGGG+AGG | - | chr7_3:1326275-1326294 | None:intergenic | 50.0% | |
| GGGATCAAGCTCAAGTTCTG+AGG | + | chr7_3:1326391-1326410 | Msa1088260:CDS | 50.0% | |
| TCTGAGGAAAAGAGTGGTGG+TGG | + | chr7_3:1326407-1326426 | Msa1088260:CDS | 50.0% | |
| !! | GGAAAAGAGTGGTGGTGGAT+TGG | + | chr7_3:1326412-1326431 | Msa1088260:CDS | 50.0% |
| GCTGGTTGTCTTCCATACGT+TGG | + | chr7_3:1325519-1325538 | Msa1088260:CDS | 50.0% | |
| GGTTGTCTTCCATACGTTGG+TGG | + | chr7_3:1325522-1325541 | Msa1088260:CDS | 50.0% | |
| TTGGCACTACCACCAACGTA+TGG | - | chr7_3:1325534-1325553 | None:intergenic | 50.0% | |
| GATCGCAATGACCCCAAACT+TGG | + | chr7_3:1325633-1325652 | Msa1088260:CDS | 50.0% | |
| TGGAAGCTGTACAGCAAGAG+TGG | - | chr7_3:1325673-1325692 | None:intergenic | 50.0% | |
| TGTTGGTCGGCCAAAAACGA+CGG | + | chr7_3:1326086-1326105 | Msa1088260:intron | 50.0% | |
| AGTTCCTCCCCTATTTCCAG+CGG | + | chr7_3:1326268-1326287 | Msa1088260:CDS | 50.0% | |
| ATTACCGCTGGAAATAGGGG+AGG | - | chr7_3:1326275-1326294 | None:intergenic | 50.0% | |
| GGGATCAAGCTCAAGTTCTG+AGG | + | chr7_3:1326391-1326410 | Msa1088260:CDS | 50.0% | |
| TCTGAGGAAAAGAGTGGTGG+TGG | + | chr7_3:1326407-1326426 | Msa1088260:CDS | 50.0% | |
| !! | GGAAAAGAGTGGTGGTGGAT+TGG | + | chr7_3:1326412-1326431 | Msa1088260:CDS | 50.0% |
| AGTTGAATTAGGCACGGGGC+CGG | - | chr7_3:1326134-1326153 | None:intergenic | 55.0% | |
| !! | AGAGTGGTGGTGGATTGGGA+AGG | + | chr7_3:1326417-1326436 | Msa1088260:CDS | 55.0% |
| AGTTGAATTAGGCACGGGGC+CGG | - | chr7_3:1326134-1326153 | None:intergenic | 55.0% | |
| !! | AGAGTGGTGGTGGATTGGGA+AGG | + | chr7_3:1326417-1326436 | Msa1088260:CDS | 55.0% |
| !! | GTGGTGGTGGATTGGGAAGG+AGG | + | chr7_3:1326420-1326439 | Msa1088260:CDS | 60.0% |
| !! | GTGGTGGATTGGGAAGGAGG+TGG | + | chr7_3:1326423-1326442 | Msa1088260:CDS | 60.0% |
| ! | TGGATTGGGAAGGAGGTGGC+TGG | + | chr7_3:1326427-1326446 | Msa1088260:CDS | 60.0% |
| ATTGGGAAGGAGGTGGCTGG+TGG | + | chr7_3:1326430-1326449 | Msa1088260:CDS | 60.0% | |
| !! | GTGGTGGTGGATTGGGAAGG+AGG | + | chr7_3:1326420-1326439 | Msa1088260:CDS | 60.0% |
| !! | GTGGTGGATTGGGAAGGAGG+TGG | + | chr7_3:1326423-1326442 | Msa1088260:CDS | 60.0% |
| ! | TGGATTGGGAAGGAGGTGGC+TGG | + | chr7_3:1326427-1326446 | Msa1088260:CDS | 60.0% |
| ATTGGGAAGGAGGTGGCTGG+TGG | + | chr7_3:1326430-1326449 | Msa1088260:CDS | 60.0% | |
| AAGGAGGTGGCTGGTGGCAG+AGG | + | chr7_3:1326436-1326455 | Msa1088260:CDS | 65.0% | |
| AAGGAGGTGGCTGGTGGCAG+AGG | + | chr7_3:1326436-1326455 | Msa1088260:CDS | 65.0% | |
| GAGGTGGCTGGTGGCAGAGG+TGG | + | chr7_3:1326439-1326458 | Msa1088260:CDS | 70.0% | |
| GAGGTGGCTGGTGGCAGAGG+TGG | + | chr7_3:1326439-1326458 | Msa1088260:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 1325405 | 1326668 | 1325405 | ID=Msa1088260;Name=Msa1088260 |
| chr7_3 | mRNA | 1325405 | 1326668 | 1325405 | ID=Msa1088260-mRNA-1;Parent=Msa1088260;Name=Msa1088260-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.33|1|1|1|3|154|184 |
| chr7_3 | exon | 1325405 | 1325726 | 1325405 | ID=Msa1088260-mRNA-1:exon:532;Parent=Msa1088260-mRNA-1 |
| chr7_3 | exon | 1326194 | 1326289 | 1326194 | ID=Msa1088260-mRNA-1:exon:533;Parent=Msa1088260-mRNA-1 |
| chr7_3 | exon | 1326378 | 1326668 | 1326378 | ID=Msa1088260-mRNA-1:exon:534;Parent=Msa1088260-mRNA-1 |
| chr7_3 | CDS | 1325405 | 1325726 | 1325405 | ID=Msa1088260-mRNA-1:cds;Parent=Msa1088260-mRNA-1 |
| chr7_3 | CDS | 1326194 | 1326289 | 1326194 | ID=Msa1088260-mRNA-1:cds;Parent=Msa1088260-mRNA-1 |
| chr7_3 | CDS | 1326378 | 1326514 | 1326378 | ID=Msa1088260-mRNA-1:cds;Parent=Msa1088260-mRNA-1 |
| chr7_3 | three_prime_UTR | 1326515 | 1326668 | 1326515 | ID=Msa1088260-mRNA-1:three_prime_utr;Parent=Msa1088260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
