AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197920 MtrunA17_Chr2g0290461 97.211 251 7 0 1 251 1 251 4.66e-171 471
Msa0197920 MtrunA17_Chr4g0076261 80.556 72 14 0 4 75 8 79 8.26e-31 115
Msa0197920 MtrunA17_Chr7g0236071 73.333 75 20 0 1 75 1 75 3.80e-22 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197920 AT4G16380.1 42.222 270 113 7 3 251 7 254 4.08e-39 136
Msa0197920 AT4G16380.3 41.636 269 114 7 4 251 15 261 3.75e-38 134
Msa0197920 AT1G51090.1 60.526 76 30 0 1 76 1 76 2.94e-25 98.6
Msa0197920 AT4G16380.2 40.343 233 112 8 32 251 15 233 6.11e-21 88.6
Msa0197920 AT1G49420.1 35.968 253 88 10 3 251 7 189 2.60e-17 77.8

Find 87 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGGCTTCTTTAGCGGGCT+TGG 0.155696 2_1:+16268098 None:intergenic
CTTCTCGGGCTCAGCGGACT+TGG 0.187553 2_1:+16268158 None:intergenic
GACTCAGCTGGTTTGGGCTT+TGG 0.238535 2_1:+16268207 None:intergenic
TTCTCGGACTCAGCTGGTTT+GGG 0.239304 2_1:+16268201 None:intergenic
CTTCTCGGACTCAGCTGGTT+TGG 0.246232 2_1:+16268200 None:intergenic
AGCAAGAAATTCAACTTTAT+AGG 0.257693 2_1:-16269003 Msa0197920:five_prime_UTR
GCAAGAAATTCAACTTTATA+GGG 0.260805 2_1:-16269002 Msa0197920:five_prime_UTR
AGTTGGTGCAGGCTTGTCTT+TGG 0.267176 2_1:+16267963 None:intergenic
TTGCTTTGACATCATACTTT+TGG 0.273180 2_1:+16268334 None:intergenic
GTTGGTGCAGGCTTGTCTTT+GGG 0.307288 2_1:+16267964 None:intergenic
TTCAGCTTCAGGCTTTGGCT+TGG 0.335388 2_1:+16267990 None:intergenic
AGCAGAGCAACAACACAAAA+TGG 0.336414 2_1:+16268919 None:intergenic
TCAGCTTCAGGCTTTGGCTT+GGG 0.337195 2_1:+16267991 None:intergenic
CGCTGAGCCCGAGAAGAAAA+AGG 0.353767 2_1:-16268151 Msa0197920:CDS
TCGGCTTCTTTAGCGGGCTT+GGG 0.362622 2_1:+16268099 None:intergenic
GTTGTAGTCCTGAGAAGATT+AGG 0.368435 2_1:-16268287 Msa0197920:CDS
AGCTGAGTCCGAGAAGAAAA+AGG 0.368826 2_1:-16268193 Msa0197920:CDS
GGCTTCTCGGCTTCTTTAGC+GGG 0.368935 2_1:+16268093 None:intergenic
TGTGGTCCACCATACTGATT+AGG 0.374070 2_1:+16267829 None:intergenic
TGTGCCTCAGATCAGATCTA+TGG 0.388015 2_1:-16268864 Msa0197920:exon
GTCAGCTGTCTTGGGCTTCT+CGG 0.388753 2_1:+16268080 None:intergenic
TGGAGGTGGGCCGTGTTATG+TGG 0.393001 2_1:-16267761 Msa0197920:CDS
GGCATTTGTGGGATCATCAT+AGG 0.405808 2_1:+16267934 None:intergenic
TTCTCGGGCTCAGCGGACTT+GGG 0.416542 2_1:+16268159 None:intergenic
CCCACAAATGCCACCACCTA+TGG 0.417785 2_1:-16267923 Msa0197920:CDS
TTGTAGTCCTGAGAAGATTA+GGG 0.426247 2_1:-16268286 Msa0197920:CDS
AGAAATGCTACAAGAAGGTT+AGG 0.427970 2_1:-16268576 Msa0197920:CDS
CTCAGCGAAGAAAACGCAAC+AGG 0.430429 2_1:-16267721 Msa0197920:CDS
GCCATAGGTGGTGGCATTTG+TGG 0.434523 2_1:+16267922 None:intergenic
TATGGGCCGTATGGCCCAAC+AGG 0.440070 2_1:+16267853 None:intergenic
GATCAGATCTATGGCTGAAA+AGG 0.443352 2_1:-16268855 Msa0197920:intron
CCACCATACTGATTAGGGTA+TGG 0.446251 2_1:+16267835 None:intergenic
GGAACATAACACATCCCAAC+TGG 0.447009 2_1:+16267895 None:intergenic
CCACCATAGCTATCGTATAC+TGG 0.450124 2_1:+16267781 None:intergenic
GGCCCATACCCTAATCAGTA+TGG 0.453969 2_1:-16267838 Msa0197920:CDS
CCATAGGTGGTGGCATTTGT+GGG 0.455573 2_1:+16267923 None:intergenic
CACCTATGGCGGTTCCAGTT+GGG 0.463164 2_1:-16267909 Msa0197920:CDS
TCAGCTGGTTTGGGCTTTGG+CGG 0.463353 2_1:+16268210 None:intergenic
CCACCTATGGCGGTTCCAGT+TGG 0.463360 2_1:-16267910 Msa0197920:CDS
TATCAAGAGTATTGAAATAG+TGG 0.464638 2_1:-16268235 Msa0197920:CDS
TTATTCAGGTGACCATTATG+AGG 0.467676 2_1:-16268621 Msa0197920:intron
GGTAGACCTGTTGGGCCATA+CGG 0.476910 2_1:-16267859 Msa0197920:CDS
GCTACGAGGGTAGACCTGTT+GGG 0.482070 2_1:-16267867 Msa0197920:CDS
TACGATAGCTATGGTGGAGG+TGG 0.483595 2_1:-16267775 Msa0197920:CDS
ATAGGCATTGCAGTTGGTGC+AGG 0.490498 2_1:+16267952 None:intergenic
GGAGGTGGGCCGTGTTATGT+GGG 0.492576 2_1:-16267760 Msa0197920:CDS
TGCTACGAGGGTAGACCTGT+TGG 0.497672 2_1:-16267868 Msa0197920:CDS
AAAATTCATACGTTTCATAG+AGG 0.498578 2_1:-16267621 Msa0197920:three_prime_UTR
AGCTTGTCCCTAATCTTCTC+AGG 0.499784 2_1:+16268279 None:intergenic
CACCATACTGATTAGGGTAT+GGG 0.504883 2_1:+16267836 None:intergenic
ATCAACCTTGAGCCTCATAA+TGG 0.505835 2_1:+16268609 None:intergenic
GGGCTTCTCGGCTTCTTTAG+CGG 0.509630 2_1:+16268092 None:intergenic
GTGGTCCACCATACTGATTA+GGG 0.511313 2_1:+16267830 None:intergenic
ACTGGAACCGCCATAGGTGG+TGG 0.525042 2_1:+16267913 None:intergenic
AGGGACAAGCTTTGTTACAA+AGG 0.533858 2_1:-16268267 Msa0197920:CDS
GTGGGAAATGAAAGTTTATG+AGG 0.536303 2_1:-16267583 Msa0197920:three_prime_UTR
TGATTAGGGTATGGGCCGTA+TGG 0.546802 2_1:+16267844 None:intergenic
AAGCTTTGTTACAAAGGTGG+AGG 0.555529 2_1:-16268261 Msa0197920:CDS
CGCTGAGATATTGATCGCAT+CGG 0.559500 2_1:+16267737 None:intergenic
CCAGTATACGATAGCTATGG+TGG 0.563800 2_1:-16267781 Msa0197920:CDS
GACAAGCTTTGTTACAAAGG+TGG 0.583958 2_1:-16268264 Msa0197920:CDS
ACGATAGCTATGGTGGAGGT+GGG 0.588196 2_1:-16267774 Msa0197920:CDS
TCGCATCGGCCCACATAACA+CGG 0.600233 2_1:+16267751 None:intergenic
GGTGACCATTATGAGGCTCA+AGG 0.605189 2_1:-16268614 Msa0197920:CDS
ATCCCAACTGGAACCGCCAT+AGG 0.607318 2_1:+16267907 None:intergenic
TTCAGATAAACCTAAAGATG+CGG 0.608872 2_1:-16268019 Msa0197920:CDS
GTGTGAGAAATGCTACAAGA+AGG 0.610703 2_1:-16268581 Msa0197920:CDS
ATCATCATAGGCATTGCAGT+TGG 0.611919 2_1:+16267946 None:intergenic
GGAAATGAAAGTTTATGAGG+TGG 0.613155 2_1:-16267580 Msa0197920:three_prime_UTR
AGACCAGTATACGATAGCTA+TGG 0.617281 2_1:-16267784 Msa0197920:CDS
GGTGGACCACAATGTTATGA+CGG 0.619668 2_1:-16267817 Msa0197920:CDS
TTATGTTCCACCGTGCTACG+AGG 0.622137 2_1:-16267881 Msa0197920:CDS
AGATTGTTGATAGACAGTGT+TGG 0.629714 2_1:+16269027 None:intergenic
CCAACTGGAACCGCCATAGG+TGG 0.630035 2_1:+16267910 None:intergenic
AGCTTAATACATAAACATGT+AGG 0.630199 2_1:+16268979 None:intergenic
ACAAATGCCACCACCTATGG+CGG 0.640749 2_1:-16267920 Msa0197920:CDS
ACAGGTCTACCCTCGTAGCA+CGG 0.650209 2_1:+16267871 None:intergenic
AGCAAACATTGTGACAATCA+CGG 0.650689 2_1:-16268316 Msa0197920:CDS
TATGTTCCACCGTGCTACGA+GGG 0.654423 2_1:-16267880 Msa0197920:CDS
TCAGCCATAGATCTGATCTG+AGG 0.655053 2_1:+16268860 None:intergenic
TAGGCGTGTAAATCAAAAGA+CGG 0.656958 2_1:-16269172 None:intergenic
GTATACGATAGCTATGGTGG+AGG 0.658092 2_1:-16267778 Msa0197920:CDS
TCAGCGAAGAAAACGCAACA+GGG 0.666817 2_1:-16267720 Msa0197920:CDS
CCATACCCTAATCAGTATGG+TGG 0.668874 2_1:-16267835 Msa0197920:CDS
TAGTATCCGTCATAACATTG+TGG 0.672588 2_1:+16267811 None:intergenic
GGTCTACCCTCGTAGCACGG+TGG 0.743664 2_1:+16267874 None:intergenic
AAACATTGTGACAATCACGG+TGG 0.804631 2_1:-16268313 Msa0197920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAACAATTAAAATTATACAT+AGG + chr2_1:16268029-16268048 None:intergenic 15.0%
!!! TTAATTGTTGATTTTTATTC+AGG - chr2_1:16268039-16268058 Msa0197920:CDS 15.0%
!!! TATTGTTTTATTAGAATTTG+TGG - chr2_1:16268199-16268218 Msa0197920:CDS 15.0%
!!! ATTTTCCAAAAAAATGTAAA+AGG - chr2_1:16268255-16268274 Msa0197920:CDS 15.0%
!!! TATATCCTTTTACATTTTTT+TGG + chr2_1:16268263-16268282 None:intergenic 15.0%
!!! TATAAAATTGAGCTAATTTT+TGG - chr2_1:16268279-16268298 Msa0197920:CDS 15.0%
!!! ATAAAATTGAGCTAATTTTT+GGG - chr2_1:16268280-16268299 Msa0197920:CDS 15.0%
!! AACTTTAGTTATAAAAACAA+AGG + chr2_1:16269030-16269049 None:intergenic 15.0%
!! CAACAATTAAAATTATACAT+AGG + chr2_1:16268029-16268048 None:intergenic 15.0%
!!! TTAATTGTTGATTTTTATTC+AGG - chr2_1:16268039-16268058 Msa0197920:CDS 15.0%
!!! TATTGTTTTATTAGAATTTG+TGG - chr2_1:16268199-16268218 Msa0197920:CDS 15.0%
!!! ATTTTCCAAAAAAATGTAAA+AGG - chr2_1:16268255-16268274 Msa0197920:CDS 15.0%
!!! TATATCCTTTTACATTTTTT+TGG + chr2_1:16268263-16268282 None:intergenic 15.0%
!!! TATAAAATTGAGCTAATTTT+TGG - chr2_1:16268279-16268298 Msa0197920:CDS 15.0%
!!! ATAAAATTGAGCTAATTTTT+GGG - chr2_1:16268280-16268299 Msa0197920:CDS 15.0%
!! AACTTTAGTTATAAAAACAA+AGG + chr2_1:16269030-16269049 None:intergenic 15.0%
!!! GATCTTCAATTCATTTTAAT+TGG - chr2_1:16267925-16267944 Msa0197920:CDS 20.0%
!! AATAAAAGAATAGCATAACA+TGG + chr2_1:16267979-16267998 None:intergenic 20.0%
!!! GATCTTCAATTCATTTTAAT+TGG - chr2_1:16267925-16267944 Msa0197920:CDS 20.0%
!! AATAAAAGAATAGCATAACA+TGG + chr2_1:16267979-16267998 None:intergenic 20.0%
! AGCAAGAAATTCAACTTTAT+AGG - chr2_1:16267671-16267690 Msa0197920:three_prime_UTR 25.0%
! GCAAGAAATTCAACTTTATA+GGG - chr2_1:16267672-16267691 Msa0197920:three_prime_UTR 25.0%
! AGCTTAATACATAAACATGT+AGG + chr2_1:16267698-16267717 None:intergenic 25.0%
!!! GGAAAGATTGATAATTTTGA+TGG + chr2_1:16267863-16267882 None:intergenic 25.0%
!! ATCATAAATTTGTTTCACCA+TGG - chr2_1:16268002-16268021 Msa0197920:CDS 25.0%
! TAAAATTATACATAGGACCA+TGG + chr2_1:16268022-16268041 None:intergenic 25.0%
! ATAGTTAGAAATGAAAGTAG+AGG + chr2_1:16268158-16268177 None:intergenic 25.0%
! TAAAAACACTTGTATGCATT+TGG - chr2_1:16268232-16268251 Msa0197920:CDS 25.0%
!!! TATCAAGAGTATTGAAATAG+TGG - chr2_1:16268439-16268458 Msa0197920:intron 25.0%
!! CAAAAGTAACTTTCTTTTCT+GGG + chr2_1:16268619-16268638 None:intergenic 25.0%
!! ACAAAAGTAACTTTCTTTTC+TGG + chr2_1:16268620-16268639 None:intergenic 25.0%
! AAAATTCATACGTTTCATAG+AGG - chr2_1:16269053-16269072 Msa0197920:five_prime_UTR 25.0%
! TTTCATAGAGGAAAAAAATG+AGG - chr2_1:16269065-16269084 Msa0197920:five_prime_UTR 25.0%
! AGCAAGAAATTCAACTTTAT+AGG - chr2_1:16267671-16267690 Msa0197920:three_prime_UTR 25.0%
! GCAAGAAATTCAACTTTATA+GGG - chr2_1:16267672-16267691 Msa0197920:three_prime_UTR 25.0%
! AGCTTAATACATAAACATGT+AGG + chr2_1:16267698-16267717 None:intergenic 25.0%
!!! GGAAAGATTGATAATTTTGA+TGG + chr2_1:16267863-16267882 None:intergenic 25.0%
!! ATCATAAATTTGTTTCACCA+TGG - chr2_1:16268002-16268021 Msa0197920:CDS 25.0%
! TAAAATTATACATAGGACCA+TGG + chr2_1:16268022-16268041 None:intergenic 25.0%
! ATAGTTAGAAATGAAAGTAG+AGG + chr2_1:16268158-16268177 None:intergenic 25.0%
! TAAAAACACTTGTATGCATT+TGG - chr2_1:16268232-16268251 Msa0197920:CDS 25.0%
!!! TATCAAGAGTATTGAAATAG+TGG - chr2_1:16268439-16268458 Msa0197920:intron 25.0%
!! CAAAAGTAACTTTCTTTTCT+GGG + chr2_1:16268619-16268638 None:intergenic 25.0%
!! ACAAAAGTAACTTTCTTTTC+TGG + chr2_1:16268620-16268639 None:intergenic 25.0%
! AAAATTCATACGTTTCATAG+AGG - chr2_1:16269053-16269072 Msa0197920:five_prime_UTR 25.0%
! TTTCATAGAGGAAAAAAATG+AGG - chr2_1:16269065-16269084 Msa0197920:five_prime_UTR 25.0%
!!! TTATGTGTTGTTTTGGAGAT+AGG + chr2_1:16267884-16267903 None:intergenic 30.0%
!!! GTGACAATTATGTGTTGTTT+TGG + chr2_1:16267891-16267910 None:intergenic 30.0%
! TTGCTTTGACATCATACTTT+TGG + chr2_1:16268343-16268362 None:intergenic 30.0%
TTCAGATAAACCTAAAGATG+CGG - chr2_1:16268655-16268674 Msa0197920:intron 30.0%
!!! TTATGTGTTGTTTTGGAGAT+AGG + chr2_1:16267884-16267903 None:intergenic 30.0%
!!! GTGACAATTATGTGTTGTTT+TGG + chr2_1:16267891-16267910 None:intergenic 30.0%
! TTGCTTTGACATCATACTTT+TGG + chr2_1:16268343-16268362 None:intergenic 30.0%
TTCAGATAAACCTAAAGATG+CGG - chr2_1:16268655-16268674 Msa0197920:intron 30.0%
! GGTTTTTGCTAGAACTGAAA+GGG + chr2_1:16267629-16267648 None:intergenic 35.0%
! TGGTTTTTGCTAGAACTGAA+AGG + chr2_1:16267630-16267649 None:intergenic 35.0%
! AGATTGTTGATAGACAGTGT+TGG + chr2_1:16267650-16267669 None:intergenic 35.0%
TTATTCAGGTGACCATTATG+AGG - chr2_1:16268053-16268072 Msa0197920:CDS 35.0%
AGAAATGCTACAAGAAGGTT+AGG - chr2_1:16268098-16268117 Msa0197920:CDS 35.0%
AGCAAACATTGTGACAATCA+CGG - chr2_1:16268358-16268377 Msa0197920:intron 35.0%
TTGTAGTCCTGAGAAGATTA+GGG - chr2_1:16268388-16268407 Msa0197920:intron 35.0%
GAACCAGAGAAGAAAAAAGA+AGG - chr2_1:16268545-16268564 Msa0197920:intron 35.0%
TAGTATCCGTCATAACATTG+TGG + chr2_1:16268866-16268885 None:intergenic 35.0%
CATAGAGGAAAAAAATGAGG+CGG - chr2_1:16269068-16269087 Msa0197920:five_prime_UTR 35.0%
ATAGAGGAAAAAAATGAGGC+GGG - chr2_1:16269069-16269088 Msa0197920:five_prime_UTR 35.0%
GTGGGAAATGAAAGTTTATG+AGG - chr2_1:16269091-16269110 Msa0197920:five_prime_UTR 35.0%
GGAAATGAAAGTTTATGAGG+TGG - chr2_1:16269094-16269113 Msa0197920:five_prime_UTR 35.0%
! GGTTTTTGCTAGAACTGAAA+GGG + chr2_1:16267629-16267648 None:intergenic 35.0%
! TGGTTTTTGCTAGAACTGAA+AGG + chr2_1:16267630-16267649 None:intergenic 35.0%
! AGATTGTTGATAGACAGTGT+TGG + chr2_1:16267650-16267669 None:intergenic 35.0%
TTATTCAGGTGACCATTATG+AGG - chr2_1:16268053-16268072 Msa0197920:CDS 35.0%
AGAAATGCTACAAGAAGGTT+AGG - chr2_1:16268098-16268117 Msa0197920:CDS 35.0%
AGCAAACATTGTGACAATCA+CGG - chr2_1:16268358-16268377 Msa0197920:intron 35.0%
TTGTAGTCCTGAGAAGATTA+GGG - chr2_1:16268388-16268407 Msa0197920:intron 35.0%
GAACCAGAGAAGAAAAAAGA+AGG - chr2_1:16268545-16268564 Msa0197920:intron 35.0%
TAGTATCCGTCATAACATTG+TGG + chr2_1:16268866-16268885 None:intergenic 35.0%
CATAGAGGAAAAAAATGAGG+CGG - chr2_1:16269068-16269087 Msa0197920:five_prime_UTR 35.0%
ATAGAGGAAAAAAATGAGGC+GGG - chr2_1:16269069-16269088 Msa0197920:five_prime_UTR 35.0%
GTGGGAAATGAAAGTTTATG+AGG - chr2_1:16269091-16269110 Msa0197920:five_prime_UTR 35.0%
GGAAATGAAAGTTTATGAGG+TGG - chr2_1:16269094-16269113 Msa0197920:five_prime_UTR 35.0%
AGCAGAGCAACAACACAAAA+TGG + chr2_1:16267758-16267777 None:intergenic 40.0%
GATCAGATCTATGGCTGAAA+AGG - chr2_1:16267819-16267838 Msa0197920:CDS 40.0%
ATCAACCTTGAGCCTCATAA+TGG + chr2_1:16268068-16268087 None:intergenic 40.0%
GTGTGAGAAATGCTACAAGA+AGG - chr2_1:16268093-16268112 Msa0197920:CDS 40.0%
AAACATTGTGACAATCACGG+TGG - chr2_1:16268361-16268380 Msa0197920:intron 40.0%
GTTGTAGTCCTGAGAAGATT+AGG - chr2_1:16268387-16268406 Msa0197920:intron 40.0%
!! AGGGACAAGCTTTGTTACAA+AGG - chr2_1:16268407-16268426 Msa0197920:intron 40.0%
!! GACAAGCTTTGTTACAAAGG+TGG - chr2_1:16268410-16268429 Msa0197920:intron 40.0%
!! AAGCTTTGTTACAAAGGTGG+AGG - chr2_1:16268413-16268432 Msa0197920:intron 40.0%
!! TCTGGTTCCTTTTTCTTCTC+GGG + chr2_1:16268533-16268552 None:intergenic 40.0%
!! CTCTGGTTCCTTTTTCTTCT+CGG + chr2_1:16268534-16268553 None:intergenic 40.0%
!!! TCGCCTTCTTTTTTCTTCTC+TGG + chr2_1:16268551-16268570 None:intergenic 40.0%
! ATCATCATAGGCATTGCAGT+TGG + chr2_1:16268731-16268750 None:intergenic 40.0%
! CACCATACTGATTAGGGTAT+GGG + chr2_1:16268841-16268860 None:intergenic 40.0%
AGACCAGTATACGATAGCTA+TGG - chr2_1:16268890-16268909 Msa0197920:five_prime_UTR 40.0%
AGCAGAGCAACAACACAAAA+TGG + chr2_1:16267758-16267777 None:intergenic 40.0%
GATCAGATCTATGGCTGAAA+AGG - chr2_1:16267819-16267838 Msa0197920:CDS 40.0%
ATCAACCTTGAGCCTCATAA+TGG + chr2_1:16268068-16268087 None:intergenic 40.0%
GTGTGAGAAATGCTACAAGA+AGG - chr2_1:16268093-16268112 Msa0197920:CDS 40.0%
AAACATTGTGACAATCACGG+TGG - chr2_1:16268361-16268380 Msa0197920:intron 40.0%
GTTGTAGTCCTGAGAAGATT+AGG - chr2_1:16268387-16268406 Msa0197920:intron 40.0%
!! AGGGACAAGCTTTGTTACAA+AGG - chr2_1:16268407-16268426 Msa0197920:intron 40.0%
!! GACAAGCTTTGTTACAAAGG+TGG - chr2_1:16268410-16268429 Msa0197920:intron 40.0%
!! AAGCTTTGTTACAAAGGTGG+AGG - chr2_1:16268413-16268432 Msa0197920:intron 40.0%
!! TCTGGTTCCTTTTTCTTCTC+GGG + chr2_1:16268533-16268552 None:intergenic 40.0%
!! CTCTGGTTCCTTTTTCTTCT+CGG + chr2_1:16268534-16268553 None:intergenic 40.0%
!!! TCGCCTTCTTTTTTCTTCTC+TGG + chr2_1:16268551-16268570 None:intergenic 40.0%
! ATCATCATAGGCATTGCAGT+TGG + chr2_1:16268731-16268750 None:intergenic 40.0%
! CACCATACTGATTAGGGTAT+GGG + chr2_1:16268841-16268860 None:intergenic 40.0%
AGACCAGTATACGATAGCTA+TGG - chr2_1:16268890-16268909 Msa0197920:five_prime_UTR 40.0%
TGTGCCTCAGATCAGATCTA+TGG - chr2_1:16267810-16267829 Msa0197920:CDS 45.0%
TCAGCCATAGATCTGATCTG+AGG + chr2_1:16267817-16267836 None:intergenic 45.0%
TAGAGGTGATGAACTCACGA+GGG + chr2_1:16268141-16268160 None:intergenic 45.0%
AGCTTGTCCCTAATCTTCTC+AGG + chr2_1:16268398-16268417 None:intergenic 45.0%
! TTTTTCTTCTCGGACTCAGC+TGG + chr2_1:16268482-16268501 None:intergenic 45.0%
AGCTGAGTCCGAGAAGAAAA+AGG - chr2_1:16268481-16268500 Msa0197920:intron 45.0%
GAGTCCGAGAAGAAAAAGGA+AGG - chr2_1:16268485-16268504 Msa0197920:intron 45.0%
! CTCGCCTTCCTTTTTCTTCT+CGG + chr2_1:16268492-16268511 None:intergenic 45.0%
! TTTTCTGGGTCAGCTGTCTT+GGG + chr2_1:16268605-16268624 None:intergenic 45.0%
! TTGGGCTTTTCCGCATCTTT+AGG + chr2_1:16268668-16268687 None:intergenic 45.0%
! TCTTTGGGCTTTTCAGCTTC+AGG + chr2_1:16268698-16268717 None:intergenic 45.0%
GGCATTTGTGGGATCATCAT+AGG + chr2_1:16268743-16268762 None:intergenic 45.0%
GGAACATAACACATCCCAAC+TGG + chr2_1:16268782-16268801 None:intergenic 45.0%
! CCACCATACTGATTAGGGTA+TGG + chr2_1:16268842-16268861 None:intergenic 45.0%
CCATACCCTAATCAGTATGG+TGG - chr2_1:16268839-16268858 Msa0197920:intron 45.0%
! GTGGTCCACCATACTGATTA+GGG + chr2_1:16268847-16268866 None:intergenic 45.0%
! TGTGGTCCACCATACTGATT+AGG + chr2_1:16268848-16268867 None:intergenic 45.0%
GGTGGACCACAATGTTATGA+CGG - chr2_1:16268857-16268876 Msa0197920:exon 45.0%
CCACCATAGCTATCGTATAC+TGG + chr2_1:16268896-16268915 None:intergenic 45.0%
CCAGTATACGATAGCTATGG+TGG - chr2_1:16268893-16268912 Msa0197920:five_prime_UTR 45.0%
GTATACGATAGCTATGGTGG+AGG - chr2_1:16268896-16268915 Msa0197920:five_prime_UTR 45.0%
CGCTGAGATATTGATCGCAT+CGG + chr2_1:16268940-16268959 None:intergenic 45.0%
TCAGCGAAGAAAACGCAACA+GGG - chr2_1:16268954-16268973 Msa0197920:five_prime_UTR 45.0%
AGGAAAAAAATGAGGCGGGT+GGG - chr2_1:16269073-16269092 Msa0197920:five_prime_UTR 45.0%
TGTGCCTCAGATCAGATCTA+TGG - chr2_1:16267810-16267829 Msa0197920:CDS 45.0%
TCAGCCATAGATCTGATCTG+AGG + chr2_1:16267817-16267836 None:intergenic 45.0%
TAGAGGTGATGAACTCACGA+GGG + chr2_1:16268141-16268160 None:intergenic 45.0%
AGCTTGTCCCTAATCTTCTC+AGG + chr2_1:16268398-16268417 None:intergenic 45.0%
! TTTTTCTTCTCGGACTCAGC+TGG + chr2_1:16268482-16268501 None:intergenic 45.0%
AGCTGAGTCCGAGAAGAAAA+AGG - chr2_1:16268481-16268500 Msa0197920:intron 45.0%
GAGTCCGAGAAGAAAAAGGA+AGG - chr2_1:16268485-16268504 Msa0197920:intron 45.0%
! CTCGCCTTCCTTTTTCTTCT+CGG + chr2_1:16268492-16268511 None:intergenic 45.0%
! TTTTCTGGGTCAGCTGTCTT+GGG + chr2_1:16268605-16268624 None:intergenic 45.0%
! TTGGGCTTTTCCGCATCTTT+AGG + chr2_1:16268668-16268687 None:intergenic 45.0%
! TCTTTGGGCTTTTCAGCTTC+AGG + chr2_1:16268698-16268717 None:intergenic 45.0%
GGCATTTGTGGGATCATCAT+AGG + chr2_1:16268743-16268762 None:intergenic 45.0%
GGAACATAACACATCCCAAC+TGG + chr2_1:16268782-16268801 None:intergenic 45.0%
! CCACCATACTGATTAGGGTA+TGG + chr2_1:16268842-16268861 None:intergenic 45.0%
CCATACCCTAATCAGTATGG+TGG - chr2_1:16268839-16268858 Msa0197920:intron 45.0%
! GTGGTCCACCATACTGATTA+GGG + chr2_1:16268847-16268866 None:intergenic 45.0%
! TGTGGTCCACCATACTGATT+AGG + chr2_1:16268848-16268867 None:intergenic 45.0%
GGTGGACCACAATGTTATGA+CGG - chr2_1:16268857-16268876 Msa0197920:exon 45.0%
CCACCATAGCTATCGTATAC+TGG + chr2_1:16268896-16268915 None:intergenic 45.0%
CCAGTATACGATAGCTATGG+TGG - chr2_1:16268893-16268912 Msa0197920:five_prime_UTR 45.0%
GTATACGATAGCTATGGTGG+AGG - chr2_1:16268896-16268915 Msa0197920:five_prime_UTR 45.0%
CGCTGAGATATTGATCGCAT+CGG + chr2_1:16268940-16268959 None:intergenic 45.0%
TCAGCGAAGAAAACGCAACA+GGG - chr2_1:16268954-16268973 Msa0197920:five_prime_UTR 45.0%
AGGAAAAAAATGAGGCGGGT+GGG - chr2_1:16269073-16269092 Msa0197920:five_prime_UTR 45.0%
GGTGACCATTATGAGGCTCA+AGG - chr2_1:16268060-16268079 Msa0197920:CDS 50.0%
GTAGAGGTGATGAACTCACG+AGG + chr2_1:16268142-16268161 None:intergenic 50.0%
! TTCTCGGACTCAGCTGGTTT+GGG + chr2_1:16268476-16268495 None:intergenic 50.0%
! CTTTTTCTTCTCGGGCTCAG+CGG + chr2_1:16268525-16268544 None:intergenic 50.0%
! CTTTTCTGGGTCAGCTGTCT+TGG + chr2_1:16268606-16268625 None:intergenic 50.0%
! TCAGCTTCAGGCTTTGGCTT+GGG + chr2_1:16268686-16268705 None:intergenic 50.0%
! TTCAGCTTCAGGCTTTGGCT+TGG + chr2_1:16268687-16268706 None:intergenic 50.0%
! GGCTTTTCAGCTTCAGGCTT+TGG + chr2_1:16268692-16268711 None:intergenic 50.0%
GTTGGTGCAGGCTTGTCTTT+GGG + chr2_1:16268713-16268732 None:intergenic 50.0%
! AGTTGGTGCAGGCTTGTCTT+TGG + chr2_1:16268714-16268733 None:intergenic 50.0%
! ATAGGCATTGCAGTTGGTGC+AGG + chr2_1:16268725-16268744 None:intergenic 50.0%
! CCATAGGTGGTGGCATTTGT+GGG + chr2_1:16268754-16268773 None:intergenic 50.0%
ACAAATGCCACCACCTATGG+CGG - chr2_1:16268754-16268773 Msa0197920:intron 50.0%
TTATGTTCCACCGTGCTACG+AGG - chr2_1:16268793-16268812 Msa0197920:intron 50.0%
TATGTTCCACCGTGCTACGA+GGG - chr2_1:16268794-16268813 Msa0197920:intron 50.0%
TGATTAGGGTATGGGCCGTA+TGG + chr2_1:16268833-16268852 None:intergenic 50.0%
GGCCCATACCCTAATCAGTA+TGG - chr2_1:16268836-16268855 Msa0197920:intron 50.0%
! TACGATAGCTATGGTGGAGG+TGG - chr2_1:16268899-16268918 Msa0197920:five_prime_UTR 50.0%
! ACGATAGCTATGGTGGAGGT+GGG - chr2_1:16268900-16268919 Msa0197920:five_prime_UTR 50.0%
CTCAGCGAAGAAAACGCAAC+AGG - chr2_1:16268953-16268972 Msa0197920:five_prime_UTR 50.0%
GAGGAAAAAAATGAGGCGGG+TGG - chr2_1:16269072-16269091 Msa0197920:five_prime_UTR 50.0%
GGTGACCATTATGAGGCTCA+AGG - chr2_1:16268060-16268079 Msa0197920:CDS 50.0%
GTAGAGGTGATGAACTCACG+AGG + chr2_1:16268142-16268161 None:intergenic 50.0%
! TTCTCGGACTCAGCTGGTTT+GGG + chr2_1:16268476-16268495 None:intergenic 50.0%
! CTTTTTCTTCTCGGGCTCAG+CGG + chr2_1:16268525-16268544 None:intergenic 50.0%
! CTTTTCTGGGTCAGCTGTCT+TGG + chr2_1:16268606-16268625 None:intergenic 50.0%
! TCAGCTTCAGGCTTTGGCTT+GGG + chr2_1:16268686-16268705 None:intergenic 50.0%
! TTCAGCTTCAGGCTTTGGCT+TGG + chr2_1:16268687-16268706 None:intergenic 50.0%
! GGCTTTTCAGCTTCAGGCTT+TGG + chr2_1:16268692-16268711 None:intergenic 50.0%
GTTGGTGCAGGCTTGTCTTT+GGG + chr2_1:16268713-16268732 None:intergenic 50.0%
! AGTTGGTGCAGGCTTGTCTT+TGG + chr2_1:16268714-16268733 None:intergenic 50.0%
! ATAGGCATTGCAGTTGGTGC+AGG + chr2_1:16268725-16268744 None:intergenic 50.0%
! CCATAGGTGGTGGCATTTGT+GGG + chr2_1:16268754-16268773 None:intergenic 50.0%
ACAAATGCCACCACCTATGG+CGG - chr2_1:16268754-16268773 Msa0197920:intron 50.0%
TTATGTTCCACCGTGCTACG+AGG - chr2_1:16268793-16268812 Msa0197920:intron 50.0%
TATGTTCCACCGTGCTACGA+GGG - chr2_1:16268794-16268813 Msa0197920:intron 50.0%
TGATTAGGGTATGGGCCGTA+TGG + chr2_1:16268833-16268852 None:intergenic 50.0%
GGCCCATACCCTAATCAGTA+TGG - chr2_1:16268836-16268855 Msa0197920:intron 50.0%
! TACGATAGCTATGGTGGAGG+TGG - chr2_1:16268899-16268918 Msa0197920:five_prime_UTR 50.0%
! ACGATAGCTATGGTGGAGGT+GGG - chr2_1:16268900-16268919 Msa0197920:five_prime_UTR 50.0%
CTCAGCGAAGAAAACGCAAC+AGG - chr2_1:16268953-16268972 Msa0197920:five_prime_UTR 50.0%
GAGGAAAAAAATGAGGCGGG+TGG - chr2_1:16269072-16269091 Msa0197920:five_prime_UTR 50.0%
!! TCAGCTGGTTTGGGCTTTGG+CGG + chr2_1:16268467-16268486 None:intergenic 55.0%
!! GACTCAGCTGGTTTGGGCTT+TGG + chr2_1:16268470-16268489 None:intergenic 55.0%
CTTCTCGGACTCAGCTGGTT+TGG + chr2_1:16268477-16268496 None:intergenic 55.0%
CGCTGAGCCCGAGAAGAAAA+AGG - chr2_1:16268523-16268542 Msa0197920:intron 55.0%
!! TCGGCTTCTTTAGCGGGCTT+GGG + chr2_1:16268578-16268597 None:intergenic 55.0%
GGCTTCTCGGCTTCTTTAGC+GGG + chr2_1:16268584-16268603 None:intergenic 55.0%
GGGCTTCTCGGCTTCTTTAG+CGG + chr2_1:16268585-16268604 None:intergenic 55.0%
GTCAGCTGTCTTGGGCTTCT+CGG + chr2_1:16268597-16268616 None:intergenic 55.0%
CCCACAAATGCCACCACCTA+TGG - chr2_1:16268751-16268770 Msa0197920:intron 55.0%
! GCCATAGGTGGTGGCATTTG+TGG + chr2_1:16268755-16268774 None:intergenic 55.0%
CACCTATGGCGGTTCCAGTT+GGG - chr2_1:16268765-16268784 Msa0197920:intron 55.0%
ATCCCAACTGGAACCGCCAT+AGG + chr2_1:16268770-16268789 None:intergenic 55.0%
ACAGGTCTACCCTCGTAGCA+CGG + chr2_1:16268806-16268825 None:intergenic 55.0%
TGCTACGAGGGTAGACCTGT+TGG - chr2_1:16268806-16268825 Msa0197920:intron 55.0%
GCTACGAGGGTAGACCTGTT+GGG - chr2_1:16268807-16268826 Msa0197920:intron 55.0%
GGTAGACCTGTTGGGCCATA+CGG - chr2_1:16268815-16268834 Msa0197920:intron 55.0%
! TCGCATCGGCCCACATAACA+CGG + chr2_1:16268926-16268945 None:intergenic 55.0%
!! TCAGCTGGTTTGGGCTTTGG+CGG + chr2_1:16268467-16268486 None:intergenic 55.0%
!! GACTCAGCTGGTTTGGGCTT+TGG + chr2_1:16268470-16268489 None:intergenic 55.0%
CTTCTCGGACTCAGCTGGTT+TGG + chr2_1:16268477-16268496 None:intergenic 55.0%
CGCTGAGCCCGAGAAGAAAA+AGG - chr2_1:16268523-16268542 Msa0197920:intron 55.0%
!! TCGGCTTCTTTAGCGGGCTT+GGG + chr2_1:16268578-16268597 None:intergenic 55.0%
GGCTTCTCGGCTTCTTTAGC+GGG + chr2_1:16268584-16268603 None:intergenic 55.0%
GGGCTTCTCGGCTTCTTTAG+CGG + chr2_1:16268585-16268604 None:intergenic 55.0%
GTCAGCTGTCTTGGGCTTCT+CGG + chr2_1:16268597-16268616 None:intergenic 55.0%
CCCACAAATGCCACCACCTA+TGG - chr2_1:16268751-16268770 Msa0197920:intron 55.0%
! GCCATAGGTGGTGGCATTTG+TGG + chr2_1:16268755-16268774 None:intergenic 55.0%
CACCTATGGCGGTTCCAGTT+GGG - chr2_1:16268765-16268784 Msa0197920:intron 55.0%
ATCCCAACTGGAACCGCCAT+AGG + chr2_1:16268770-16268789 None:intergenic 55.0%
ACAGGTCTACCCTCGTAGCA+CGG + chr2_1:16268806-16268825 None:intergenic 55.0%
TGCTACGAGGGTAGACCTGT+TGG - chr2_1:16268806-16268825 Msa0197920:intron 55.0%
GCTACGAGGGTAGACCTGTT+GGG - chr2_1:16268807-16268826 Msa0197920:intron 55.0%
GGTAGACCTGTTGGGCCATA+CGG - chr2_1:16268815-16268834 Msa0197920:intron 55.0%
! TCGCATCGGCCCACATAACA+CGG + chr2_1:16268926-16268945 None:intergenic 55.0%
! TTCTCGGGCTCAGCGGACTT+GGG + chr2_1:16268518-16268537 None:intergenic 60.0%
!! CTCGGCTTCTTTAGCGGGCT+TGG + chr2_1:16268579-16268598 None:intergenic 60.0%
ACTGGAACCGCCATAGGTGG+TGG + chr2_1:16268764-16268783 None:intergenic 60.0%
CCAACTGGAACCGCCATAGG+TGG + chr2_1:16268767-16268786 None:intergenic 60.0%
CCACCTATGGCGGTTCCAGT+TGG - chr2_1:16268764-16268783 Msa0197920:intron 60.0%
TATGGGCCGTATGGCCCAAC+AGG + chr2_1:16268824-16268843 None:intergenic 60.0%
TGGAGGTGGGCCGTGTTATG+TGG - chr2_1:16268913-16268932 Msa0197920:five_prime_UTR 60.0%
GGAGGTGGGCCGTGTTATGT+GGG - chr2_1:16268914-16268933 Msa0197920:five_prime_UTR 60.0%
! TTCTCGGGCTCAGCGGACTT+GGG + chr2_1:16268518-16268537 None:intergenic 60.0%
!! CTCGGCTTCTTTAGCGGGCT+TGG + chr2_1:16268579-16268598 None:intergenic 60.0%
ACTGGAACCGCCATAGGTGG+TGG + chr2_1:16268764-16268783 None:intergenic 60.0%
CCAACTGGAACCGCCATAGG+TGG + chr2_1:16268767-16268786 None:intergenic 60.0%
CCACCTATGGCGGTTCCAGT+TGG - chr2_1:16268764-16268783 Msa0197920:intron 60.0%
TATGGGCCGTATGGCCCAAC+AGG + chr2_1:16268824-16268843 None:intergenic 60.0%
TGGAGGTGGGCCGTGTTATG+TGG - chr2_1:16268913-16268932 Msa0197920:five_prime_UTR 60.0%
GGAGGTGGGCCGTGTTATGT+GGG - chr2_1:16268914-16268933 Msa0197920:five_prime_UTR 60.0%
! CTTCTCGGGCTCAGCGGACT+TGG + chr2_1:16268519-16268538 None:intergenic 65.0%
GGTCTACCCTCGTAGCACGG+TGG + chr2_1:16268803-16268822 None:intergenic 65.0%
! CTTCTCGGGCTCAGCGGACT+TGG + chr2_1:16268519-16268538 None:intergenic 65.0%
GGTCTACCCTCGTAGCACGG+TGG + chr2_1:16268803-16268822 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 16267508 16269188 16267508 ID=Msa0197920;Name=Msa0197920
chr2_1 mRNA 16267508 16269188 16267508 ID=Msa0197920-mRNA-1;Parent=Msa0197920;Name=Msa0197920-mRNA-1;_AED=0.10;_eAED=0.10;_QI=321|1|1|1|1|1|3|197|251
chr2_1 exon 16267508 16268366 16267508 ID=Msa0197920-mRNA-1:exon:6767;Parent=Msa0197920-mRNA-1
chr2_1 exon 16268554 16268635 16268554 ID=Msa0197920-mRNA-1:exon:6766;Parent=Msa0197920-mRNA-1
chr2_1 exon 16268856 16269188 16268856 ID=Msa0197920-mRNA-1:exon:6765;Parent=Msa0197920-mRNA-1
chr2_1 five_prime_UTR 16268868 16269188 16268868 ID=Msa0197920-mRNA-1:five_prime_utr;Parent=Msa0197920-mRNA-1
chr2_1 CDS 16268856 16268867 16268856 ID=Msa0197920-mRNA-1:cds;Parent=Msa0197920-mRNA-1
chr2_1 CDS 16268554 16268635 16268554 ID=Msa0197920-mRNA-1:cds;Parent=Msa0197920-mRNA-1
chr2_1 CDS 16267705 16268366 16267705 ID=Msa0197920-mRNA-1:cds;Parent=Msa0197920-mRNA-1
chr2_1 three_prime_UTR 16267508 16267704 16267508 ID=Msa0197920-mRNA-1:three_prime_utr;Parent=Msa0197920-mRNA-1
Gene Sequence

>Msa0197920

ATGGCTGAAAAGGTGACCATTATGAGGCTCAAGGTTGATCTTGAGTGTGAGAAATGCTACAAGAAGGTTAGGAAGCTTCTCAACAAGTACCCTCAAATTCGAGACCAAAAGTATGATGTCAAAGCAAACATTGTGACAATCACGGTGGTATGTTGTAGTCCTGAGAAGATTAGGGACAAGCTTTGTTACAAAGGTGGAGGTTCTATCAAGAGTATTGAAATAGTGGATCCGCCAAAGCCCAAACCAGCTGAGTCCGAGAAGAAAAAGGAAGGCGAGAAGCCCAAGTCCGCTGAGCCCGAGAAGAAAAAGGAACCAGAGAAGAAAAAAGAAGGCGAGAAGCCCAAGCCCGCTAAAGAAGCCGAGAAGCCCAAGACAGCTGACCCAGAAAAGAAAGTTACTTTTGTTTCTGTAGTCAAAGATTCAGATAAACCTAAAGATGCGGAAAAGCCCAAGCCAAAGCCTGAAGCTGAAAAGCCCAAAGACAAGCCTGCACCAACTGCAATGCCTATGATGATCCCACAAATGCCACCACCTATGGCGGTTCCAGTTGGGATGTGTTATGTTCCACCGTGCTACGAGGGTAGACCTGTTGGGCCATACGGCCCATACCCTAATCAGTATGGTGGACCACAATGTTATGACGGATACTATGCAAGACCAGTATACGATAGCTATGGTGGAGGTGGGCCGTGTTATGTGGGCCGATGCGATCAATATCTCAGCGAAGAAAACGCAACAGGGTGCACAATTATGTGA

Protein sequence

>Msa0197920

MAEKVTIMRLKVDLECEKCYKKVRKLLNKYPQIRDQKYDVKANIVTITVVCCSPEKIRDKLCYKGGGSIKSIEIVDPPKPKPAESEKKKEGEKPKSAEPEKKKEPEKKKEGEKPKPAKEAEKPKTADPEKKVTFVSVVKDSDKPKDAEKPKPKPEAEKPKDKPAPTAMPMMIPQMPPPMAVPVGMCYVPPCYEGRPVGPYGPYPNQYGGPQCYDGYYARPVYDSYGGGGPCYVGRCDQYLSEENATGCTIM*