AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1186260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1186260 MtrunA17_Chr8g0352611 97.125 313 9 0 1 313 1 313 0.0 622
Msa1186260 MtrunA17_Chr8g0352621 76.752 314 71 2 1 313 1 313 1.74e-176 490
Msa1186260 MtrunA17_Chr3g0083901 71.975 314 87 1 1 313 1 314 1.50e-167 468
Msa1186260 MtrunA17_Chr3g0083921 68.153 314 99 1 1 313 1 314 1.04e-158 445
Msa1186260 MtrunA17_Chr8g0352591 68.590 312 86 2 1 311 1 301 1.63e-149 421
Msa1186260 MtrunA17_Chr8g0382281 51.429 315 151 2 1 313 1 315 7.52e-102 301
Msa1186260 MtrunA17_Chr2g0293441 44.409 313 173 1 1 312 1 313 6.66e-97 288
Msa1186260 MtrunA17_Chr5g0425971 47.115 312 163 2 1 310 1 312 2.74e-96 287
Msa1186260 MtrunA17_Chr8g0352571 40.823 316 182 2 1 311 1 316 4.28e-77 238
Msa1186260 MtrunA17_Chr8g0393281 37.143 315 196 2 1 313 1 315 1.10e-69 219
Msa1186260 MtrunA17_Chr1g0162071 37.460 315 193 4 1 312 1 314 5.46e-66 209
Msa1186260 MtrunA17_Chr6g0479411 37.821 312 192 2 1 310 28 339 1.32e-65 209
Msa1186260 MtrunA17_Chr6g0479421 37.179 312 194 2 1 310 1 312 7.98e-63 201
Msa1186260 MtrunA17_Chr1g0210981 34.936 312 201 2 1 310 1 312 3.68e-59 192
Msa1186260 MtrunA17_Chr6g0479391 35.235 298 192 1 14 310 15 312 1.80e-56 185
Msa1186260 MtrunA17_Chr8g0352581 35.647 317 178 8 13 311 4 312 2.80e-49 166
Msa1186260 MtrunA17_Chr3g0084011 67.123 73 24 0 1 73 1 73 7.02e-30 109
Msa1186260 MtrunA17_Chr6g0461141 26.984 315 213 7 8 311 2 310 1.88e-27 108
Msa1186260 MtrunA17_Chr3g0084021 66.176 68 23 0 143 210 5 72 5.73e-24 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1186260 AT5G12380.1 54.019 311 142 1 1 310 1 311 8.50e-122 352
Msa1186260 AT1G35720.1 51.420 317 149 4 1 313 1 316 1.24e-106 313
Msa1186260 AT5G10230.1 51.603 312 149 2 1 310 1 312 5.34e-105 310
Msa1186260 AT5G10220.1 51.274 314 149 3 1 310 1 314 4.25e-102 302
Msa1186260 AT5G65020.1 51.438 313 149 3 1 310 1 313 7.41e-102 301
Msa1186260 AT5G65020.2 51.042 288 139 2 25 310 11 298 7.80e-93 278
Msa1186260 AT2G38760.1 41.509 318 178 3 1 310 1 318 1.40e-79 245
Msa1186260 AT1G68090.1 35.783 313 198 3 1 310 1 313 7.06e-60 194
Msa1186260 AT2G38750.2 33.117 308 180 7 25 313 2 302 3.69e-42 148
Msa1186260 AT2G38750.1 33.117 308 180 7 25 313 19 319 4.13e-42 148
Msa1186260 AT1G68090.2 34.000 250 162 3 1 247 1 250 1.49e-41 145

Find 99 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTGAATTAAATTCTTTA+TGG 0.147771 8_1:-24384859 Msa1186260:three_prime_UTR
GCTTCAGTTTGTGCCAATTT+TGG 0.171052 8_1:+24386067 None:intergenic
CTCACATTCAAGAGCTCTTC+AGG 0.224828 8_1:+24386462 None:intergenic
TATTTGTTAGATTAAGATTA+AGG 0.254376 8_1:-24384939 Msa1186260:three_prime_UTR
AAACATCTGAGATGACTTTC+AGG 0.262103 8_1:+24385322 None:intergenic
AATTTAATTCAGAATGTCTT+AGG 0.274980 8_1:+24384867 None:intergenic
TTAATCTTTACAGAAGCTTT+TGG 0.285693 8_1:-24385758 Msa1186260:intron
GACTTAAAGTTGTGATGTTT+TGG 0.291418 8_1:-24385152 Msa1186260:three_prime_UTR
TAGGGCTAGTGACTGCATTT+AGG 0.307120 8_1:-24386111 Msa1186260:CDS
TGATGAGATCAATCCAAAAT+TGG 0.309418 8_1:-24386080 Msa1186260:CDS
CGTCAAATTTCAGAAGTATA+TGG 0.319961 8_1:-24384905 Msa1186260:three_prime_UTR
GGTATGTTTGATGGTTCATT+TGG 0.334148 8_1:-24385056 Msa1186260:three_prime_UTR
TGCGGAGCGTGATGCTGTTT+TGG 0.342220 8_1:-24386550 Msa1186260:CDS
GCACTCCTTGGAGGAAGATT+TGG 0.342661 8_1:-24386415 Msa1186260:CDS
GGCGAAGATGGCTGGAGGTA+TGG 0.343612 8_1:+24386388 None:intergenic
GACATCCGATAAAATCAAAA+TGG 0.356401 8_1:+24387458 None:intergenic
CCTTGTAGTCAAGATCCTTA+TGG 0.357139 8_1:+24385994 None:intergenic
CAGCATCTTCATTGGGAGAA+TGG 0.357218 8_1:+24387149 None:intergenic
AATGGTTGCTGGGAGCAATA+AGG 0.357762 8_1:+24387167 None:intergenic
AGAAAATACATATTCAACTA+TGG 0.360880 8_1:-24387194 Msa1186260:exon
AAGTTCCTTCTCACTCTCTT+GGG 0.370043 8_1:-24385234 Msa1186260:CDS
GATGAAGAAATCTAAGTCTA+TGG 0.387403 8_1:+24387242 None:intergenic
GAAGTTCCTTCTCACTCTCT+TGG 0.389750 8_1:-24385235 Msa1186260:CDS
TGGTTGTATGGTATGTTTGA+TGG 0.401963 8_1:-24385065 Msa1186260:three_prime_UTR
ATAGAGAAATAAATGTATCT+TGG 0.408696 8_1:+24387482 None:intergenic
CATATACTTCTGAAATTTGA+CGG 0.410726 8_1:+24384906 None:intergenic
TAGAGCTTCAGCATCTTCAT+TGG 0.413067 8_1:+24387141 None:intergenic
ACTTGCCTGGCGAAGATGGC+TGG 0.416208 8_1:+24386380 None:intergenic
GCGAAGATGGCTGGAGGTAT+GGG 0.419308 8_1:+24386389 None:intergenic
AGATCCTTATGGCTTCTTCA+TGG 0.424810 8_1:+24386005 None:intergenic
TAGAGAAATAAATGTATCTT+GGG 0.430932 8_1:+24387483 None:intergenic
TTCATTGGGAGAATGGTTGC+TGG 0.439937 8_1:+24387156 None:intergenic
AGAGCTTCAGCATCTTCATT+GGG 0.446820 8_1:+24387142 None:intergenic
GGTTGAAAGTTGCAATCAGC+TGG 0.450175 8_1:+24385963 None:intergenic
GCTGTGGCAAAGGAAACTTC+AGG 0.453417 8_1:-24385267 Msa1186260:CDS
AAGGACTTGCCTGGCGAAGA+TGG 0.455062 8_1:+24386376 None:intergenic
ATGGTTGCTGGGAGCAATAA+GGG 0.478955 8_1:+24387168 None:intergenic
TTGGTTTATCTTGTTGAATG+TGG 0.489020 8_1:-24385133 Msa1186260:three_prime_UTR
CACAAGCTCCATCAAGAGAA+GGG 0.499940 8_1:+24385192 None:intergenic
TGAGGATCTTATCAAACGAT+TGG 0.500715 8_1:-24386770 Msa1186260:CDS
TACCTCCAGCCATCTTCGCC+AGG 0.501875 8_1:-24386385 Msa1186260:intron
AACAGAAAGCCGTGTACCGT+TGG 0.504787 8_1:-24386584 Msa1186260:intron
AAATTGGCACAAACTGAAGC+TGG 0.505178 8_1:-24386064 Msa1186260:CDS
TCACATTCAAGAGCTCTTCA+GGG 0.508130 8_1:+24386463 None:intergenic
CAAACGCTACAAGCACTCCT+TGG 0.517630 8_1:-24386427 Msa1186260:CDS
CCATAAGGATCTTGACTACA+AGG 0.517780 8_1:-24385994 Msa1186260:CDS
TTATGAAGGCATTTATAATG+AGG 0.522283 8_1:-24386788 Msa1186260:CDS
TGAGATCAAAGGAGACTTCG+AGG 0.522824 8_1:-24386743 Msa1186260:intron
TCTTGAGCATGCTGTGGCAA+AGG 0.526005 8_1:-24385277 Msa1186260:CDS
CGAGATGCAATCAAGAAGGT+TGG 0.532695 8_1:-24385396 Msa1186260:CDS
GTGACTGCATTTAGGTATGT+TGG 0.533407 8_1:-24386103 Msa1186260:CDS
TTTATCATATACCTTAGTGA+TGG 0.537206 8_1:+24385916 None:intergenic
GAAGCCATGAAGAAGCCATA+AGG 0.541126 8_1:-24386009 Msa1186260:CDS
CAAATCAGAAAAGCTTATGA+AGG 0.541965 8_1:-24386802 Msa1186260:CDS
CTGTGGCAAAGGAAACTTCA+GGG 0.542389 8_1:-24385266 Msa1186260:CDS
AAATAACATCTCTACATACA+TGG 0.545836 8_1:+24384957 None:intergenic
CATTAATTAAATGATGTATG+TGG 0.546333 8_1:-24387374 Msa1186260:five_prime_UTR
TCATGTTAAGTACTATGAAA+AGG 0.546698 8_1:-24385677 Msa1186260:intron
AAAACAGCATCACGCTCCGC+AGG 0.547985 8_1:+24386552 None:intergenic
ATCATATACCTTAGTGATGG+AGG 0.549366 8_1:+24385919 None:intergenic
ACGCTACAAGCACTCCTTGG+AGG 0.551063 8_1:-24386424 Msa1186260:CDS
GAGTCAGTGAAAGAGAAGAA+AGG 0.551826 8_1:-24386031 Msa1186260:CDS
AAAACTGTGATAACAATACT+TGG 0.555304 8_1:-24386850 Msa1186260:CDS
TAACATGATCATTGAAGCAT+CGG 0.562381 8_1:+24385692 None:intergenic
TCATTGGGAGAATGGTTGCT+GGG 0.565172 8_1:+24387157 None:intergenic
AGATGCTGAAGCTCTAAGAA+AGG 0.567867 8_1:-24387134 Msa1186260:CDS
ACGGGTGAGCGCATCCTCAT+CGG 0.568327 8_1:+24385371 None:intergenic
TATTTATAATAGTTACCGGA+TGG 0.570325 8_1:-24387302 Msa1186260:five_prime_UTR
TTGCCACAGCATGCTCAAGA+AGG 0.574229 8_1:+24385280 None:intergenic
GAGCTCTGCTCACAACCACA+CGG 0.574900 8_1:+24385352 None:intergenic
TTCAAGCATCCAACGGTACA+CGG 0.583068 8_1:+24386575 None:intergenic
TCATGGTACCTCCATCACTA+AGG 0.583313 8_1:-24385927 Msa1186260:intron
TGTTTATAAAAGTGATCGGA+GGG 0.584467 8_1:+24387417 None:intergenic
AGTTCCTTCTCACTCTCTTG+GGG 0.584889 8_1:-24385233 Msa1186260:CDS
GCACAAGCTCCATCAAGAGA+AGG 0.587412 8_1:+24385191 None:intergenic
GCAAATGTTGCTATCAAGAG+TGG 0.587800 8_1:-24386528 Msa1186260:CDS
CGATTGGAATCTGAGATCAA+AGG 0.597023 8_1:-24386754 Msa1186260:CDS
ATCATTGAAGCATCGGATGG+TGG 0.601308 8_1:+24385699 None:intergenic
AAGATGGCTGGAGGTATGGG+CGG 0.601311 8_1:+24386392 None:intergenic
TTGTTTATAAAAGTGATCGG+AGG 0.603656 8_1:+24387416 None:intergenic
GGCGGCCAAATCTTCCTCCA+AGG 0.611461 8_1:+24386410 None:intergenic
AGCTCTGCTCACAACCACAC+GGG 0.620972 8_1:+24385353 None:intergenic
GCTCTAAGAAAGGCTTTCGA+AGG 0.621766 8_1:-24387124 Msa1186260:intron
CCGTTGGATGCTTGAACCTG+CGG 0.622222 8_1:-24386568 Msa1186260:CDS
GTTGAAAGTTGCAATCAGCT+GGG 0.623575 8_1:+24385964 None:intergenic
ACAAGCTCCATCAAGAGAAG+GGG 0.634760 8_1:+24385193 None:intergenic
GTGCTTGTAGCGTTTGACGT+AGG 0.638713 8_1:+24386434 None:intergenic
ATGATCATTGAAGCATCGGA+TGG 0.640360 8_1:+24385696 None:intergenic
CACATTCAAGAGCTCTTCAG+GGG 0.642650 8_1:+24386464 None:intergenic
GGTGCGAGATGCAATCAAGA+AGG 0.643809 8_1:-24385400 Msa1186260:CDS
CTTTCCCCAAGAGAGTGAGA+AGG 0.653124 8_1:+24385229 None:intergenic
CAAGAAGGTTGGAACCGATG+AGG 0.660964 8_1:-24385385 Msa1186260:CDS
TACCATGAGTCTCTCTATAG+CGG 0.662344 8_1:+24385942 None:intergenic
TGTCCTTCTTGAGCATGCTG+TGG 0.666036 8_1:-24385283 Msa1186260:CDS
CCGCAGGTTCAAGCATCCAA+CGG 0.676153 8_1:+24386568 None:intergenic
AACCGCTATAGAGAGACTCA+TGG 0.679537 8_1:-24385944 Msa1186260:CDS
TGCCTGGCGAAGATGGCTGG+AGG 0.681169 8_1:+24386383 None:intergenic
TGTGGCAAAGGAAACTTCAG+GGG 0.706591 8_1:-24385265 Msa1186260:CDS
TGAGGATGCGCTCACCCGTG+TGG 0.717868 8_1:-24385367 Msa1186260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTATAATAGTTAC+CGG - chr8_1:24385014-24385033 Msa1186260:three_prime_UTR 10.0%
!!! TTTTTGTTTATAAAAGTGAT+CGG + chr8_1:24384910-24384929 None:intergenic 15.0%
!! TTATGTTGTATTAAAATTGA+TGG - chr8_1:24385413-24385432 Msa1186260:intron 15.0%
!! CAATTACATGTATAAAAATT+AGG - chr8_1:24386112-24386131 Msa1186260:CDS 15.0%
!!! TATTTGTTAGATTAAGATTA+AGG - chr8_1:24387381-24387400 Msa1186260:five_prime_UTR 15.0%
!! ATTCTGAATTAAATTCTTTA+TGG - chr8_1:24387461-24387480 Msa1186260:five_prime_UTR 15.0%
!! ATAGAGAAATAAATGTATCT+TGG + chr8_1:24384841-24384860 None:intergenic 20.0%
!!! CTATACCATTTTGATTTTAT+CGG - chr8_1:24384857-24384876 Msa1186260:three_prime_UTR 20.0%
!! CATTAATTAAATGATGTATG+TGG - chr8_1:24384946-24384965 Msa1186260:three_prime_UTR 20.0%
!! AGAAAATACATATTCAACTA+TGG - chr8_1:24385126-24385145 Msa1186260:three_prime_UTR 20.0%
!! AGATTAGACTGAAATTAAAA+TGG + chr8_1:24385319-24385338 None:intergenic 20.0%
!! TTTATCAATGTTAATCATCA+TGG + chr8_1:24385621-24385640 None:intergenic 20.0%
!!! ACTAGTACTATTTTATTACA+TGG - chr8_1:24387235-24387254 Msa1186260:five_prime_UTR 20.0%
!!! TATTTTATTACATGGTTGTA+TGG - chr8_1:24387243-24387262 Msa1186260:five_prime_UTR 20.0%
!! AATTTAATTCAGAATGTCTT+AGG + chr8_1:24387456-24387475 None:intergenic 20.0%
! TATTTATAATAGTTACCGGA+TGG - chr8_1:24385018-24385037 Msa1186260:three_prime_UTR 25.0%
! GTCTATAAACAAGAAAAAAG+GGG + chr8_1:24385231-24385250 None:intergenic 25.0%
! GGTCTATAAACAAGAAAAAA+GGG + chr8_1:24385232-24385251 None:intergenic 25.0%
! TGGTCTATAAACAAGAAAAA+AGG + chr8_1:24385233-24385252 None:intergenic 25.0%
! AGATATAATCTATAGGACTA+TGG + chr8_1:24385258-24385277 None:intergenic 25.0%
! TGATGACAGATATAATCTAT+AGG + chr8_1:24385265-24385284 None:intergenic 25.0%
!!! ATGATTCATTTTTGTAGGAT+GGG - chr8_1:24385436-24385455 Msa1186260:intron 25.0%
! AAAACTGTGATAACAATACT+TGG - chr8_1:24385470-24385489 Msa1186260:intron 25.0%
!!! TTATGAAGGCATTTATAATG+AGG - chr8_1:24385532-24385551 Msa1186260:intron 25.0%
! AAATTGTTTGTGTGTTTCTT+TGG - chr8_1:24385645-24385664 Msa1186260:intron 25.0%
! AAAAGCAATATTAGACCATA+TGG - chr8_1:24385988-24386007 Msa1186260:CDS 25.0%
!!! AGATCATGGTTTTAAAATTG+CGG - chr8_1:24386075-24386094 Msa1186260:CDS 25.0%
! TTTATCATATACCTTAGTGA+TGG + chr8_1:24386407-24386426 None:intergenic 25.0%
!!! TTATTGTTTTGAGTTGACAA+GGG + chr8_1:24386486-24386505 None:intergenic 25.0%
!!! TTTATTGTTTTGAGTTGACA+AGG + chr8_1:24386487-24386506 None:intergenic 25.0%
! AAGCTTCTGTAAAGATTAAA+GGG + chr8_1:24386561-24386580 None:intergenic 25.0%
! AAAGCTTCTGTAAAGATTAA+AGG + chr8_1:24386562-24386581 None:intergenic 25.0%
!! TTAATCTTTACAGAAGCTTT+TGG - chr8_1:24386562-24386581 Msa1186260:CDS 25.0%
! TCATGTTAAGTACTATGAAA+AGG - chr8_1:24386643-24386662 Msa1186260:intron 25.0%
! GTTGTACATTGAAAACAAAT+CGG - chr8_1:24386723-24386742 Msa1186260:intron 25.0%
!! CTAGCAAAACATTTTATGAA+TGG + chr8_1:24386751-24386770 None:intergenic 25.0%
! AAATAACATCTCTACATACA+TGG + chr8_1:24387366-24387385 None:intergenic 25.0%
!!! CATATACTTCTGAAATTTGA+CGG + chr8_1:24387417-24387436 None:intergenic 25.0%
GACATCCGATAAAATCAAAA+TGG + chr8_1:24384865-24384884 None:intergenic 30.0%
!! TTTTATCGGATGTCACTTAA+AGG - chr8_1:24384871-24384890 Msa1186260:three_prime_UTR 30.0%
TGTTTATAAAAGTGATCGGA+GGG + chr8_1:24384906-24384925 None:intergenic 30.0%
TTGTTTATAAAAGTGATCGG+AGG + chr8_1:24384907-24384926 None:intergenic 30.0%
ACAAAAATGAATACACCATC+CGG + chr8_1:24385036-24385055 None:intergenic 30.0%
GATGAAGAAATCTAAGTCTA+TGG + chr8_1:24385081-24385100 None:intergenic 30.0%
!! GATGGATGATTCATTTTTGT+AGG - chr8_1:24385431-24385450 Msa1186260:intron 30.0%
!! GATGATTCATTTTTGTAGGA+TGG - chr8_1:24385435-24385454 Msa1186260:intron 30.0%
!! TGATTCATTTTTGTAGGATG+GGG - chr8_1:24385437-24385456 Msa1186260:intron 30.0%
CAAATCAGAAAAGCTTATGA+AGG - chr8_1:24385518-24385537 Msa1186260:intron 30.0%
CAAAAACTACAATGTCATTG+TGG - chr8_1:24385815-24385834 Msa1186260:intron 30.0%
!! TTAGAAGAGTTGATGGAAAA+AGG + chr8_1:24385966-24385985 None:intergenic 30.0%
! CTTTTTGTTAGAAGAGTTGA+TGG + chr8_1:24385973-24385992 None:intergenic 30.0%
!!! ATCGCGATTTTAAAACCATA+TGG + chr8_1:24386006-24386025 None:intergenic 30.0%
GTATGAGAAACATTAGATCA+TGG - chr8_1:24386061-24386080 Msa1186260:CDS 30.0%
TGTGATATTTCTTGAAACCA+TGG - chr8_1:24386147-24386166 Msa1186260:intron 30.0%
!!! ACCATGGTTTATTGATTTTG+TGG - chr8_1:24386163-24386182 Msa1186260:intron 30.0%
ACCACAAAATCAATAAACCA+TGG + chr8_1:24386167-24386186 None:intergenic 30.0%
TGATGAGATCAATCCAAAAT+TGG - chr8_1:24386240-24386259 Msa1186260:intron 30.0%
TAACATGATCATTGAAGCAT+CGG + chr8_1:24386631-24386650 None:intergenic 30.0%
!! ATAGTTCTGATTTGTTGACA+TGG + chr8_1:24386818-24386837 None:intergenic 30.0%
! ACATTTTCTGATCATATCGT+AGG - chr8_1:24386896-24386915 Msa1186260:intron 30.0%
! GACTTAAAGTTGTGATGTTT+TGG - chr8_1:24387168-24387187 Msa1186260:CDS 30.0%
TTGGTTTATCTTGTTGAATG+TGG - chr8_1:24387187-24387206 Msa1186260:exon 30.0%
! CGTCAAATTTCAGAAGTATA+TGG - chr8_1:24387415-24387434 Msa1186260:five_prime_UTR 30.0%
TAATCTATAGGACTATGGCA+TGG + chr8_1:24385253-24385272 None:intergenic 35.0%
TGAGGATCTTATCAAACGAT+TGG - chr8_1:24385550-24385569 Msa1186260:intron 35.0%
!!! TTTTTCGAGCAGCTTTTAGT+AGG - chr8_1:24386190-24386209 Msa1186260:intron 35.0%
!! TTTTCGAGCAGCTTTTAGTA+GGG - chr8_1:24386191-24386210 Msa1186260:intron 35.0%
ATCATATACCTTAGTGATGG+AGG + chr8_1:24386404-24386423 None:intergenic 35.0%
! TTACAGAAGCTTTTGGATGA+AGG - chr8_1:24386569-24386588 Msa1186260:CDS 35.0%
! AGGATCTGATGATTTTCAGA+AGG - chr8_1:24386589-24386608 Msa1186260:intron 35.0%
! TTTTCTGATCATATCGTAGG+TGG - chr8_1:24386899-24386918 Msa1186260:intron 35.0%
! AAACATCTGAGATGACTTTC+AGG + chr8_1:24387001-24387020 None:intergenic 35.0%
TGGTTGTATGGTATGTTTGA+TGG - chr8_1:24387255-24387274 Msa1186260:five_prime_UTR 35.0%
! GGTATGTTTGATGGTTCATT+TGG - chr8_1:24387264-24387283 Msa1186260:five_prime_UTR 35.0%
AGAGCTTCAGCATCTTCATT+GGG + chr8_1:24385181-24385200 None:intergenic 40.0%
TAGAGCTTCAGCATCTTCAT+TGG + chr8_1:24385182-24385201 None:intergenic 40.0%
!! AGATGCTGAAGCTCTAAGAA+AGG - chr8_1:24385186-24385205 Msa1186260:three_prime_UTR 40.0%
! CGATTGGAATCTGAGATCAA+AGG - chr8_1:24385566-24385585 Msa1186260:intron 40.0%
GCAAATGTTGCTATCAAGAG+TGG - chr8_1:24385792-24385811 Msa1186260:intron 40.0%
TCACATTCAAGAGCTCTTCA+GGG + chr8_1:24385860-24385879 None:intergenic 40.0%
GTGACTGCATTTAGGTATGT+TGG - chr8_1:24386217-24386236 Msa1186260:intron 40.0%
! GCTTCAGTTTGTGCCAATTT+TGG + chr8_1:24386256-24386275 None:intergenic 40.0%
AAATTGGCACAAACTGAAGC+TGG - chr8_1:24386256-24386275 Msa1186260:intron 40.0%
GAGTCAGTGAAAGAGAAGAA+AGG - chr8_1:24386289-24386308 Msa1186260:intron 40.0%
AGATCCTTATGGCTTCTTCA+TGG + chr8_1:24386318-24386337 None:intergenic 40.0%
CCTTGTAGTCAAGATCCTTA+TGG + chr8_1:24386329-24386348 None:intergenic 40.0%
CCATAAGGATCTTGACTACA+AGG - chr8_1:24386326-24386345 Msa1186260:intron 40.0%
GTTGAAAGTTGCAATCAGCT+GGG + chr8_1:24386359-24386378 None:intergenic 40.0%
TACCATGAGTCTCTCTATAG+CGG + chr8_1:24386381-24386400 None:intergenic 40.0%
!! ATGATCATTGAAGCATCGGA+TGG + chr8_1:24386627-24386646 None:intergenic 40.0%
AAGTTCCTTCTCACTCTCTT+GGG - chr8_1:24387086-24387105 Msa1186260:intron 40.0%
! GAATTTTCCCCTTCTCTTGA+TGG - chr8_1:24387120-24387139 Msa1186260:intron 40.0%
ATGGTTGCTGGGAGCAATAA+GGG + chr8_1:24385155-24385174 None:intergenic 45.0%
AATGGTTGCTGGGAGCAATA+AGG + chr8_1:24385156-24385175 None:intergenic 45.0%
TCATTGGGAGAATGGTTGCT+GGG + chr8_1:24385166-24385185 None:intergenic 45.0%
TTCATTGGGAGAATGGTTGC+TGG + chr8_1:24385167-24385186 None:intergenic 45.0%
CAGCATCTTCATTGGGAGAA+TGG + chr8_1:24385174-24385193 None:intergenic 45.0%
!! GCTCTAAGAAAGGCTTTCGA+AGG - chr8_1:24385196-24385215 Msa1186260:three_prime_UTR 45.0%
TGAGATCAAAGGAGACTTCG+AGG - chr8_1:24385577-24385596 Msa1186260:intron 45.0%
TTCAAGCATCCAACGGTACA+CGG + chr8_1:24385748-24385767 None:intergenic 45.0%
CACATTCAAGAGCTCTTCAG+GGG + chr8_1:24385859-24385878 None:intergenic 45.0%
CTCACATTCAAGAGCTCTTC+AGG + chr8_1:24385861-24385880 None:intergenic 45.0%
TGATGGAAAAAGGACTTGCC+TGG + chr8_1:24385956-24385975 None:intergenic 45.0%
! TAGGGCTAGTGACTGCATTT+AGG - chr8_1:24386209-24386228 Msa1186260:intron 45.0%
GAAGCCATGAAGAAGCCATA+AGG - chr8_1:24386311-24386330 Msa1186260:intron 45.0%
GGTTGAAAGTTGCAATCAGC+TGG + chr8_1:24386360-24386379 None:intergenic 45.0%
AACCGCTATAGAGAGACTCA+TGG - chr8_1:24386376-24386395 Msa1186260:intron 45.0%
TCATGGTACCTCCATCACTA+AGG - chr8_1:24386393-24386412 Msa1186260:CDS 45.0%
GAGTTACCACCTATGAAGCA+CGG - chr8_1:24386429-24386448 Msa1186260:CDS 45.0%
!! ATCATTGAAGCATCGGATGG+TGG + chr8_1:24386624-24386643 None:intergenic 45.0%
CGAGATGCAATCAAGAAGGT+TGG - chr8_1:24386924-24386943 Msa1186260:intron 45.0%
CTGTGGCAAAGGAAACTTCA+GGG - chr8_1:24387054-24387073 Msa1186260:intron 45.0%
TGTGGCAAAGGAAACTTCAG+GGG - chr8_1:24387055-24387074 Msa1186260:intron 45.0%
GAAGTTCCTTCTCACTCTCT+TGG - chr8_1:24387085-24387104 Msa1186260:intron 45.0%
AGTTCCTTCTCACTCTCTTG+GGG - chr8_1:24387087-24387106 Msa1186260:intron 45.0%
ACAAGCTCCATCAAGAGAAG+GGG + chr8_1:24387130-24387149 None:intergenic 45.0%
CACAAGCTCCATCAAGAGAA+GGG + chr8_1:24387131-24387150 None:intergenic 45.0%
!! AAAATTATGATATTATAATT+TGG - chr8_1:24386520-24386539 Msa1186260:CDS 5.0%
AACAGAAAGCCGTGTACCGT+TGG - chr8_1:24385736-24385755 Msa1186260:CDS 50.0%
GTGCTTGTAGCGTTTGACGT+AGG + chr8_1:24385889-24385908 None:intergenic 50.0%
CAAACGCTACAAGCACTCCT+TGG - chr8_1:24385893-24385912 Msa1186260:intron 50.0%
GCACTCCTTGGAGGAAGATT+TGG - chr8_1:24385905-24385924 Msa1186260:intron 50.0%
TACCGCTCATGCTTCGTTTG+CGG - chr8_1:24386030-24386049 Msa1186260:CDS 50.0%
AACCGCAAACGAAGCATGAG+CGG + chr8_1:24386035-24386054 None:intergenic 50.0%
!! TAGAGGTGTCCGTGCTTCAT+AGG + chr8_1:24386441-24386460 None:intergenic 50.0%
CGCGACACGCTTAATACTAG+AGG + chr8_1:24386458-24386477 None:intergenic 50.0%
GGTGCGAGATGCAATCAAGA+AGG - chr8_1:24386920-24386939 Msa1186260:intron 50.0%
CAAGAAGGTTGGAACCGATG+AGG - chr8_1:24386935-24386954 Msa1186260:intron 50.0%
TGTCCTTCTTGAGCATGCTG+TGG - chr8_1:24387037-24387056 Msa1186260:intron 50.0%
TTGCCACAGCATGCTCAAGA+AGG + chr8_1:24387043-24387062 None:intergenic 50.0%
TCTTGAGCATGCTGTGGCAA+AGG - chr8_1:24387043-24387062 Msa1186260:intron 50.0%
GCTGTGGCAAAGGAAACTTC+AGG - chr8_1:24387053-24387072 Msa1186260:intron 50.0%
CTTTCCCCAAGAGAGTGAGA+AGG + chr8_1:24387094-24387113 None:intergenic 50.0%
GCACAAGCTCCATCAAGAGA+AGG + chr8_1:24387132-24387151 None:intergenic 50.0%
CCGCAGGTTCAAGCATCCAA+CGG + chr8_1:24385755-24385774 None:intergenic 55.0%
CCGTTGGATGCTTGAACCTG+CGG - chr8_1:24385752-24385771 Msa1186260:intron 55.0%
AAAACAGCATCACGCTCCGC+AGG + chr8_1:24385771-24385790 None:intergenic 55.0%
!! TGCGGAGCGTGATGCTGTTT+TGG - chr8_1:24385770-24385789 Msa1186260:intron 55.0%
ACGCTACAAGCACTCCTTGG+AGG - chr8_1:24385896-24385915 Msa1186260:intron 55.0%
! AAGATGGCTGGAGGTATGGG+CGG + chr8_1:24385931-24385950 None:intergenic 55.0%
! GCGAAGATGGCTGGAGGTAT+GGG + chr8_1:24385934-24385953 None:intergenic 55.0%
AAGGACTTGCCTGGCGAAGA+TGG + chr8_1:24385947-24385966 None:intergenic 55.0%
AGGTGTCCGTGCTTCATAGG+TGG + chr8_1:24386438-24386457 None:intergenic 55.0%
AGCTCTGCTCACAACCACAC+GGG + chr8_1:24386970-24386989 None:intergenic 55.0%
GAGCTCTGCTCACAACCACA+CGG + chr8_1:24386971-24386990 None:intergenic 55.0%
GGCGGCCAAATCTTCCTCCA+AGG + chr8_1:24385913-24385932 None:intergenic 60.0%
GGCGAAGATGGCTGGAGGTA+TGG + chr8_1:24385935-24385954 None:intergenic 60.0%
TACCTCCAGCCATCTTCGCC+AGG - chr8_1:24385935-24385954 Msa1186260:CDS 60.0%
ACTTGCCTGGCGAAGATGGC+TGG + chr8_1:24385943-24385962 None:intergenic 60.0%
ACGGGTGAGCGCATCCTCAT+CGG + chr8_1:24386952-24386971 None:intergenic 60.0%
TGCCTGGCGAAGATGGCTGG+AGG + chr8_1:24385940-24385959 None:intergenic 65.0%
TGAGGATGCGCTCACCCGTG+TGG - chr8_1:24386953-24386972 Msa1186260:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 24384838 24387504 24384838 ID=Msa1186260;Name=Msa1186260
chr8_1 mRNA 24384838 24387504 24384838 ID=Msa1186260-mRNA-1;Parent=Msa1186260;Name=Msa1186260-mRNA-1;_AED=0.31;_eAED=0.31;_QI=307|1|1|1|1|1|6|383|313
chr8_1 exon 24384838 24385424 24384838 ID=Msa1186260-mRNA-1:exon:8886;Parent=Msa1186260-mRNA-1
chr8_1 exon 24385678 24385767 24385678 ID=Msa1186260-mRNA-1:exon:8885;Parent=Msa1186260-mRNA-1
chr8_1 exon 24385928 24386140 24385928 ID=Msa1186260-mRNA-1:exon:8884;Parent=Msa1186260-mRNA-1
chr8_1 exon 24386386 24386601 24386386 ID=Msa1186260-mRNA-1:exon:8883;Parent=Msa1186260-mRNA-1
chr8_1 exon 24386744 24386889 24386744 ID=Msa1186260-mRNA-1:exon:8882;Parent=Msa1186260-mRNA-1
chr8_1 exon 24387125 24387504 24387125 ID=Msa1186260-mRNA-1:exon:8881;Parent=Msa1186260-mRNA-1
chr8_1 five_prime_UTR 24387198 24387504 24387198 ID=Msa1186260-mRNA-1:five_prime_utr;Parent=Msa1186260-mRNA-1
chr8_1 CDS 24387125 24387197 24387125 ID=Msa1186260-mRNA-1:cds;Parent=Msa1186260-mRNA-1
chr8_1 CDS 24386744 24386889 24386744 ID=Msa1186260-mRNA-1:cds;Parent=Msa1186260-mRNA-1
chr8_1 CDS 24386386 24386601 24386386 ID=Msa1186260-mRNA-1:cds;Parent=Msa1186260-mRNA-1
chr8_1 CDS 24385928 24386140 24385928 ID=Msa1186260-mRNA-1:cds;Parent=Msa1186260-mRNA-1
chr8_1 CDS 24385678 24385767 24385678 ID=Msa1186260-mRNA-1:cds;Parent=Msa1186260-mRNA-1
chr8_1 CDS 24385221 24385424 24385221 ID=Msa1186260-mRNA-1:cds;Parent=Msa1186260-mRNA-1
chr8_1 three_prime_UTR 24384838 24385220 24384838 ID=Msa1186260-mRNA-1:three_prime_utr;Parent=Msa1186260-mRNA-1
Gene Sequence

>Msa1186260

ATGGCTACCCTTATTGCTCCCAGCAACCATTCTCCCAATGAAGATGCTGAAGCTCTAAGAAAGGCTTTCGAAGGATGGGGTACTGATGAGAAAACTGTGATAACAATACTTGGTCATAGAAACTCTAATCAGATACAGCAAATCAGAAAAGCTTATGAAGGCATTTATAATGAGGATCTTATCAAACGATTGGAATCTGAGATCAAAGGAGACTTCGAGAAAGCCGTGTACCGTTGGATGCTTGAACCTGCGGAGCGTGATGCTGTTTTGGCAAATGTTGCTATCAAGAGTGGCAAAAACTACAATGTCATTGTGGAAATTTCTTCTGTTCTCACCCCTGAAGAGCTCTTGAATGTGAGACGTGCCTACGTCAAACGCTACAAGCACTCCTTGGAGGAAGATTTGGCCGCCCATACCTCCAGCCATCTTCGCCAGCTTTTAGTAGGGCTAGTGACTGCATTTAGGTATGTTGGTGATGAGATCAATCCAAAATTGGCACAAACTGAAGCTGGAATTCTTCATGAGTCAGTGAAAGAGAAGAAAGGAAGCCATGAAGAAGCCATAAGGATCTTGACTACAAGGAGCAAGACCCAGCTGATTGCAACTTTCAACCGCTATAGAGAGACTCATGGTACCTCCATCACTAAGAAGCTTTTGGATGAAGGATCTGATGATTTTCAGAAGGCATTATATACCACCATCCGATGCTTCAATGATCATGTTAAGTACTATGAAAAGGTGGTGCGAGATGCAATCAAGAAGGTTGGAACCGATGAGGATGCGCTCACCCGTGTGGTTGTGAGCAGAGCTCAGCATGACCTGAAAGTCATCTCAGATGTTTACTACAAAAGAAACAGTGTCCTTCTTGAGCATGCTGTGGCAAAGGAAACTTCAGGGGATTACAAGAAGTTCCTTCTCACTCTCTTGGGGAAAGAAGAGTGA

Protein sequence

>Msa1186260

MATLIAPSNHSPNEDAEALRKAFEGWGTDEKTVITILGHRNSNQIQQIRKAYEGIYNEDLIKRLESEIKGDFEKAVYRWMLEPAERDAVLANVAIKSGKNYNVIVEISSVLTPEELLNVRRAYVKRYKHSLEEDLAAHTSSHLRQLLVGLVTAFRYVGDEINPKLAQTEAGILHESVKEKKGSHEEAIRILTTRSKTQLIATFNRYRETHGTSITKKLLDEGSDDFQKALYTTIRCFNDHVKYYEKVVRDAIKKVGTDEDALTRVVVSRAQHDLKVISDVYYKRNSVLLEHAVAKETSGDYKKFLLTLLGKEE*