Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421290 | GAU46608.1 | 83.607 | 183 | 30 | 0 | 2 | 184 | 1 | 183 | 1.15e-100 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421290 | sp|F4I082|LTPG6_ARATH | 43.258 | 178 | 93 | 4 | 8 | 181 | 10 | 183 | 3.57e-43 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421290 | A0A2Z6NQM3 | 83.607 | 183 | 30 | 0 | 2 | 184 | 1 | 183 | 5.48e-101 | 298 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0421290 | 0.839306 | 1.714875e-57 | -8.615850e-47 |
| Msa0045620 | Msa0421290 | 0.808023 | 3.795809e-50 | -8.615850e-47 |
| Msa0050530 | Msa0421290 | 0.855349 | 6.698353e-62 | -8.615850e-47 |
| Msa0100600 | Msa0421290 | 0.812278 | 4.595165e-51 | -8.615850e-47 |
| Msa0100890 | Msa0421290 | 0.833086 | 6.527263e-56 | -8.615850e-47 |
| Msa0136690 | Msa0421290 | 0.804583 | 2.014615e-49 | -8.615850e-47 |
| Msa0197920 | Msa0421290 | 0.810382 | 1.185213e-50 | -8.615850e-47 |
| Msa0206370 | Msa0421290 | 0.800192 | 1.617675e-48 | -8.615850e-47 |
| Msa0219840 | Msa0421290 | 0.801906 | 7.216594e-49 | -8.615850e-47 |
| Msa0235080 | Msa0421290 | 0.812683 | 3.747725e-51 | -8.615850e-47 |
| Msa0372100 | Msa0421290 | 0.855666 | 5.414824e-62 | -8.615850e-47 |
| Msa0387890 | Msa0421290 | 0.926492 | 4.352766e-91 | -8.615850e-47 |
| Msa0416210 | Msa0421290 | 0.802116 | 6.534814e-49 | -8.615850e-47 |
| Msa0421290 | Msa0467250 | 0.913896 | 3.611713e-84 | -8.615850e-47 |
| Msa0421290 | Msa0527560 | 0.811921 | 5.496733e-51 | -8.615850e-47 |
| Msa0421290 | Msa0530660 | 0.801299 | 9.612247e-49 | -8.615850e-47 |
| Msa0421290 | Msa0566460 | 0.819179 | 1.330333e-52 | -8.615850e-47 |
| Msa0421290 | Msa0574660 | 0.800696 | 1.276817e-48 | -8.615850e-47 |
| Msa0421290 | Msa0575950 | 0.802459 | 5.554302e-49 | -8.615850e-47 |
| Msa0421290 | Msa0576330 | 0.818624 | 1.779035e-52 | -8.615850e-47 |
| Msa0421290 | Msa0587180 | 0.804260 | 2.352533e-49 | -8.615850e-47 |
| Msa0421290 | Msa0605520 | 0.810083 | 1.374890e-50 | -8.615850e-47 |
| Msa0421290 | Msa0623310 | 0.808171 | 3.530735e-50 | -8.615850e-47 |
| Msa0421290 | Msa0626980 | 0.803078 | 4.138386e-49 | -8.615850e-47 |
| Msa0421290 | Msa0627360 | 0.802607 | 5.177984e-49 | -8.615850e-47 |
| Msa0421290 | Msa0658120 | 0.801801 | 7.584823e-49 | -8.615850e-47 |
| Msa0421290 | Msa0673940 | 0.809860 | 1.535275e-50 | -8.615850e-47 |
| Msa0421290 | Msa0687370 | 0.815027 | 1.140645e-51 | -8.615850e-47 |
| Msa0421290 | Msa0702970 | 0.800420 | 1.453611e-48 | -8.615850e-47 |
| Msa0421290 | Msa0706690 | 0.835767 | 1.385121e-56 | -8.615850e-47 |
| Msa0421290 | Msa0716700 | 0.825366 | 4.874285e-54 | -8.615850e-47 |
| Msa0421290 | Msa0751720 | 0.809960 | 1.461143e-50 | -8.615850e-47 |
| Msa0421290 | Msa0772420 | 0.828063 | 1.106842e-54 | -8.615850e-47 |
| Msa0421290 | Msa0846900 | 0.801557 | 8.510525e-49 | -8.615850e-47 |
| Msa0421290 | Msa0876630 | 0.802981 | 4.333387e-49 | -8.615850e-47 |
| Msa0421290 | Msa0913520 | 0.821418 | 4.081150e-53 | -8.615850e-47 |
| Msa0421290 | Msa0921340 | 0.811499 | 6.790715e-51 | -8.615850e-47 |
| Msa0421290 | Msa0987670 | 0.824250 | 8.936720e-54 | -8.615850e-47 |
| Msa0421290 | Msa1021560 | 0.806741 | 7.098503e-50 | -8.615850e-47 |
| Msa0421290 | Msa1060300 | 0.804541 | 2.056383e-49 | -8.615850e-47 |
| Msa0421290 | Msa1085680 | 0.817785 | 2.753949e-52 | -8.615850e-47 |
| Msa0421290 | Msa1088260 | 0.926823 | 2.758793e-91 | -8.615850e-47 |
| Msa0421290 | Msa1105540 | 0.819221 | 1.301769e-52 | -8.615850e-47 |
| Msa0421290 | Msa1105580 | 0.824028 | 1.007607e-53 | -8.615850e-47 |
| Msa0421290 | Msa1148930 | 0.836407 | 9.531304e-57 | -8.615850e-47 |
| Msa0421290 | Msa1186260 | 0.813168 | 2.933848e-51 | -8.615850e-47 |
| Msa0421290 | Msa1200360 | 0.813617 | 2.337574e-51 | -8.615850e-47 |
| Msa0421290 | Msa1227760 | 0.814570 | 1.440551e-51 | -8.615850e-47 |
| Msa0421290 | Msa1231440 | 0.803632 | 3.177955e-49 | -8.615850e-47 |
| Msa0421290 | Msa1278000 | 0.802296 | 6.000372e-49 | -8.615850e-47 |
| Msa0421290 | Msa1343460 | 0.827243 | 1.742137e-54 | -8.615850e-47 |
| Msa0421290 | Msa1362590 | 0.802776 | 4.778059e-49 | -8.615850e-47 |
| Msa0421290 | Msa1368170 | 0.825609 | 4.270393e-54 | -8.615850e-47 |
| Msa0421290 | Msa1371270 | 0.825882 | 3.679201e-54 | -8.615850e-47 |
| Msa0421290 | Msa1371800 | 0.805547 | 1.266255e-49 | -8.615850e-47 |
| Msa0421290 | Msa1376310 | 0.807065 | 6.062813e-50 | -8.615850e-47 |
| Msa0421290 | Msa1385570 | 0.835303 | 1.814833e-56 | -8.615850e-47 |
| Msa0421290 | Msa1430250 | 0.811543 | 6.644130e-51 | -8.615850e-47 |
| Msa0260980 | Msa0421290 | 0.809178 | 2.151128e-50 | -8.615850e-47 |
| Msa0336430 | Msa0421290 | 0.818533 | 1.865474e-52 | -8.615850e-47 |
| Msa0336460 | Msa0421290 | 0.810855 | 9.366879e-51 | -8.615850e-47 |
| Msa0336520 | Msa0421290 | 0.820700 | 5.971420e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421290 | MtrunA17_Chr3g0121381 | 90.270 | 185 | 16 | 1 | 1 | 183 | 1 | 185 | 9.99e-98 | 280 |
| Msa0421290 | MtrunA17_Chr8g0378461 | 50.829 | 181 | 83 | 3 | 9 | 183 | 14 | 194 | 4.29e-66 | 201 |
| Msa0421290 | MtrunA17_Chr8g0356191 | 39.487 | 195 | 105 | 6 | 1 | 182 | 1 | 195 | 8.21e-37 | 126 |
| Msa0421290 | MtrunA17_Chr7g0219391 | 48.000 | 100 | 52 | 0 | 8 | 107 | 12 | 111 | 8.80e-30 | 106 |
| Msa0421290 | MtrunA17_Chr1g0205181 | 33.083 | 133 | 81 | 2 | 12 | 144 | 15 | 139 | 1.42e-13 | 65.1 |
| Msa0421290 | MtrunA17_Chr1g0205201 | 36.667 | 90 | 55 | 2 | 12 | 101 | 10 | 97 | 1.82e-12 | 62.0 |
| Msa0421290 | MtrunA17_Chr1g0205191 | 39.189 | 74 | 42 | 2 | 28 | 101 | 25 | 95 | 8.24e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421290 | AT1G55260.1 | 43.258 | 178 | 93 | 4 | 8 | 181 | 53 | 226 | 7.16e-44 | 145 |
| Msa0421290 | AT1G55260.2 | 43.258 | 178 | 90 | 5 | 8 | 181 | 53 | 223 | 2.29e-43 | 144 |
| Msa0421290 | AT2G44300.1 | 39.796 | 196 | 96 | 5 | 7 | 183 | 11 | 203 | 1.43e-40 | 136 |
| Msa0421290 | AT2G44290.1 | 38.579 | 197 | 96 | 4 | 9 | 183 | 11 | 204 | 1.65e-40 | 136 |
| Msa0421290 | AT3G58550.1 | 38.926 | 149 | 84 | 4 | 4 | 145 | 9 | 157 | 6.72e-30 | 108 |
| Msa0421290 | AT1G03103.1 | 31.915 | 94 | 64 | 0 | 8 | 101 | 2 | 95 | 1.96e-14 | 68.2 |
| Msa0421290 | AT5G09370.2 | 37.736 | 106 | 61 | 2 | 24 | 127 | 21 | 123 | 3.23e-14 | 66.6 |
| Msa0421290 | AT5G09370.3 | 37.600 | 125 | 64 | 5 | 24 | 138 | 21 | 141 | 3.83e-14 | 67.0 |
| Msa0421290 | AT2G48130.2 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0421290 | AT2G48130.6 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0421290 | AT2G48130.4 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0421290 | AT2G48130.5 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0421290 | AT2G48130.1 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0421290 | AT2G48130.3 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0421290 | AT5G09370.1 | 39.175 | 97 | 54 | 2 | 24 | 118 | 21 | 114 | 6.19e-14 | 66.6 |
| Msa0421290 | AT1G73890.1 | 39.189 | 74 | 45 | 0 | 31 | 104 | 30 | 103 | 7.58e-14 | 67.0 |
| Msa0421290 | AT3G22600.1 | 28.188 | 149 | 95 | 5 | 10 | 150 | 6 | 150 | 2.56e-12 | 62.4 |
| Msa0421290 | AT4G14815.1 | 30.000 | 90 | 62 | 1 | 12 | 101 | 7 | 95 | 4.51e-11 | 58.9 |
Find 52 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAATTACCGCTGGAAAT+AGG | 0.158824 | 3_2:+70166821 | None:intergenic |
| TCTTATCAAGGACTTGTTTA+AGG | 0.173161 | 3_2:+70167513 | None:intergenic |
| ACCTTAGCTTCAGGGGATTT+AGG | 0.238114 | 3_2:+70166887 | None:intergenic |
| AATAATTACCGCTGGAAATA+GGG | 0.274317 | 3_2:+70166822 | None:intergenic |
| AGAAGACTCATTACTTGAAT+TGG | 0.276229 | 3_2:-70166552 | Msa0421290:three_prime_UTR |
| AAGGAGGTGGCTGGTGGCAG+AGG | 0.280788 | 3_2:-70166662 | Msa0421290:CDS |
| ATTCAACTTGATACCAAGTT+TGG | 0.282616 | 3_2:+70167448 | None:intergenic |
| GATAAACTTGTTACTCTTGC+TGG | 0.316761 | 3_2:-70167593 | Msa0421290:CDS |
| CCTTCAAACACCTTAGCTTC+AGG | 0.355634 | 3_2:+70166878 | None:intergenic |
| TTCAACTTGATACCAAGTTT+GGG | 0.358716 | 3_2:+70167449 | None:intergenic |
| ACACATTCAGTTATATTAGA+TGG | 0.359046 | 3_2:+70167386 | None:intergenic |
| TGGATTGGGAAGGAGGTGGC+TGG | 0.375917 | 3_2:-70166671 | Msa0421290:CDS |
| AGGGGAGGAACTGTTTGTTT+TGG | 0.377595 | 3_2:+70166841 | None:intergenic |
| GAAAAGAGTGGTGGTGGATT+GGG | 0.380896 | 3_2:-70166685 | Msa0421290:CDS |
| TGCATTATTATTTCTACTGT+TGG | 0.388007 | 3_2:-70167663 | Msa0421290:CDS |
| TTATTATTTCTACTGTTGGC+TGG | 0.403176 | 3_2:-70167659 | Msa0421290:CDS |
| CTTATCAAGGACTTGTTTAA+GGG | 0.407090 | 3_2:+70167514 | None:intergenic |
| GATGGTATGTGACAAGCGTT+TGG | 0.413443 | 3_2:+70167404 | None:intergenic |
| GGAAAAGAGTGGTGGTGGAT+TGG | 0.435272 | 3_2:-70166686 | Msa0421290:CDS |
| GCTAAGGTGTTTGAAGGACT+TGG | 0.437073 | 3_2:-70166872 | Msa0421290:CDS |
| GAGGTGGCTGGTGGCAGAGG+TGG | 0.447551 | 3_2:-70166659 | Msa0421290:CDS |
| AAGTGAGATATGAAAAGAAA+TGG | 0.450601 | 3_2:+70166622 | None:intergenic |
| GGAAGTACAACAATCTATAG+TGG | 0.456166 | 3_2:+70167535 | None:intergenic |
| CTTCAAACACCTTAGCTTCA+GGG | 0.472455 | 3_2:+70166879 | None:intergenic |
| ACCTAAATCCCCTGAAGCTA+AGG | 0.474094 | 3_2:-70166888 | Msa0421290:CDS |
| CCTGAAGCTAAGGTGTTTGA+AGG | 0.476875 | 3_2:-70166878 | Msa0421290:CDS |
| GATCGCAATGACCCCAAACT+TGG | 0.492547 | 3_2:-70167461 | Msa0421290:CDS |
| GTGGTGGATTGGGAAGGAGG+TGG | 0.495091 | 3_2:-70166675 | Msa0421290:CDS |
| GTGGTGGTGGATTGGGAAGG+AGG | 0.496077 | 3_2:-70166678 | Msa0421290:CDS |
| TCTGAGGAAAAGAGTGGTGG+TGG | 0.499326 | 3_2:-70166691 | Msa0421290:CDS |
| TGTTTAAGGTTCTGCTGAGA+GGG | 0.503753 | 3_2:-70166728 | Msa0421290:intron |
| GAAGTACAACAATCTATAGT+GGG | 0.507467 | 3_2:+70167536 | None:intergenic |
| ATTGGGAAGGAGGTGGCTGG+TGG | 0.530641 | 3_2:-70166668 | Msa0421290:CDS |
| TCAAACTTGAACTTCAAGCT+AGG | 0.546383 | 3_2:+70166593 | None:intergenic |
| TTCAAACACCTTAGCTTCAG+GGG | 0.554009 | 3_2:+70166880 | None:intergenic |
| ATAATTACCGCTGGAAATAG+GGG | 0.565206 | 3_2:+70166823 | None:intergenic |
| GGTTGTCTTCCATACGTTGG+TGG | 0.578596 | 3_2:-70167572 | Msa0421290:CDS |
| GCTGGTTGTCTTCCATACGT+TGG | 0.583066 | 3_2:-70167575 | Msa0421290:CDS |
| TTGGCACTACCACCAACGTA+TGG | 0.586024 | 3_2:+70167563 | None:intergenic |
| TGGAAGCTGTACAGCAAGAG+TGG | 0.593369 | 3_2:+70167424 | None:intergenic |
| TCAACTTGATACCAAGTTTG+GGG | 0.608436 | 3_2:+70167450 | None:intergenic |
| ATGTTTAAGGTTCTGCTGAG+AGG | 0.614875 | 3_2:-70166729 | Msa0421290:intron |
| AGAGTGGTGGTGGATTGGGA+AGG | 0.615185 | 3_2:-70166681 | Msa0421290:CDS |
| GGGATCAAGCTCAAGTTCTG+AGG | 0.620498 | 3_2:-70166707 | Msa0421290:CDS |
| GGTCATTGCGATCTTTGATG+AGG | 0.621163 | 3_2:+70167471 | None:intergenic |
| GTTTAAGGTTCTGCTGAGAG+GGG | 0.633464 | 3_2:-70166727 | Msa0421290:intron |
| AAGTACAACAATCTATAGTG+GGG | 0.642782 | 3_2:+70167537 | None:intergenic |
| AGTTCCTCCCCTATTTCCAG+CGG | 0.660557 | 3_2:-70166830 | Msa0421290:intron |
| ATTACCGCTGGAAATAGGGG+AGG | 0.669828 | 3_2:+70166826 | None:intergenic |
| TCAAGTTCTGAGGAAAAGAG+TGG | 0.677014 | 3_2:-70166697 | Msa0421290:CDS |
| AGTACAACAATCTATAGTGG+GGG | 0.691483 | 3_2:+70167538 | None:intergenic |
| AGTTCTGAGGAAAAGAGTGG+TGG | 0.693229 | 3_2:-70166694 | Msa0421290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGAGAATTTTTTTTTGT+TGG | - | chr3_2:70167121-70167140 | Msa0421290:intron | 15.0% |
| !!! | TAATGAGAATTTTTTTTTGT+TGG | - | chr3_2:70167121-70167140 | Msa0421290:intron | 15.0% |
| !!! | TTAGTTTGCTTTATGTATTA+AGG | - | chr3_2:70166828-70166847 | Msa0421290:intron | 20.0% |
| !!! | TAGTTTGCTTTATGTATTAA+GGG | - | chr3_2:70166829-70166848 | Msa0421290:intron | 20.0% |
| !! | ATATAAATAAGGCTTAATCA+TGG | - | chr3_2:70167004-70167023 | Msa0421290:intron | 20.0% |
| !! | AAAATTATAATAATTACCGC+TGG | + | chr3_2:70167339-70167358 | None:intergenic | 20.0% |
| !!! | TTAGTTTGCTTTATGTATTA+AGG | - | chr3_2:70166828-70166847 | Msa0421290:intron | 20.0% |
| !!! | TAGTTTGCTTTATGTATTAA+GGG | - | chr3_2:70166829-70166848 | Msa0421290:intron | 20.0% |
| !! | ATATAAATAAGGCTTAATCA+TGG | - | chr3_2:70167004-70167023 | Msa0421290:intron | 20.0% |
| !! | AAAATTATAATAATTACCGC+TGG | + | chr3_2:70167339-70167358 | None:intergenic | 20.0% |
| !!! | TGCATTATTATTTCTACTGT+TGG | - | chr3_2:70166487-70166506 | Msa0421290:three_prime_UTR | 25.0% |
| ! | ACACATTCAGTTATATTAGA+TGG | + | chr3_2:70166767-70166786 | None:intergenic | 25.0% |
| ! | TCTAATATAACTGAATGTGT+AGG | - | chr3_2:70166767-70166786 | Msa0421290:intron | 25.0% |
| !!! | CACTTACTTTTGAAGATTAT+TGG | + | chr3_2:70167035-70167054 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTG+AGG | - | chr3_2:70167035-70167054 | Msa0421290:intron | 25.0% |
| !!! | GAGAATTTTTTTTTGTTGGT+CGG | - | chr3_2:70167125-70167144 | Msa0421290:intron | 25.0% |
| ! | AGAACCTTAAACATTATTAG+AGG | + | chr3_2:70167415-70167434 | None:intergenic | 25.0% |
| ! | AAGTGAGATATGAAAAGAAA+TGG | + | chr3_2:70167531-70167550 | None:intergenic | 25.0% |
| ! | CTCAGAAAAATATAGGAATT+GGG | + | chr3_2:70167683-70167702 | None:intergenic | 25.0% |
| !! | GAATTTGCTCAGAAAAATAT+AGG | + | chr3_2:70167690-70167709 | None:intergenic | 25.0% |
| !!! | TGCATTATTATTTCTACTGT+TGG | - | chr3_2:70166487-70166506 | Msa0421290:three_prime_UTR | 25.0% |
| ! | ACACATTCAGTTATATTAGA+TGG | + | chr3_2:70166767-70166786 | None:intergenic | 25.0% |
| ! | TCTAATATAACTGAATGTGT+AGG | - | chr3_2:70166767-70166786 | Msa0421290:intron | 25.0% |
| !!! | CACTTACTTTTGAAGATTAT+TGG | + | chr3_2:70167035-70167054 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTG+AGG | - | chr3_2:70167035-70167054 | Msa0421290:intron | 25.0% |
| !!! | GAGAATTTTTTTTTGTTGGT+CGG | - | chr3_2:70167125-70167144 | Msa0421290:intron | 25.0% |
| ! | AGAACCTTAAACATTATTAG+AGG | + | chr3_2:70167415-70167434 | None:intergenic | 25.0% |
| ! | AAGTGAGATATGAAAAGAAA+TGG | + | chr3_2:70167531-70167550 | None:intergenic | 25.0% |
| ! | CTCAGAAAAATATAGGAATT+GGG | + | chr3_2:70167683-70167702 | None:intergenic | 25.0% |
| !! | GAATTTGCTCAGAAAAATAT+AGG | + | chr3_2:70167690-70167709 | None:intergenic | 25.0% |
| ! | TAATGCAGTTACACTTTTGT+TGG | + | chr3_2:70166474-70166493 | None:intergenic | 30.0% |
| !! | TTATTATTTCTACTGTTGGC+TGG | - | chr3_2:70166491-70166510 | Msa0421290:three_prime_UTR | 30.0% |
| AAGTACAACAATCTATAGTG+GGG | + | chr3_2:70166616-70166635 | None:intergenic | 30.0% | |
| GAAGTACAACAATCTATAGT+GGG | + | chr3_2:70166617-70166636 | None:intergenic | 30.0% | |
| ! | CTTATCAAGGACTTGTTTAA+GGG | + | chr3_2:70166639-70166658 | None:intergenic | 30.0% |
| ! | TCTTATCAAGGACTTGTTTA+AGG | + | chr3_2:70166640-70166659 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTGGTCTTATCA+AGG | + | chr3_2:70166652-70166671 | None:intergenic | 30.0% |
| TTCAACTTGATACCAAGTTT+GGG | + | chr3_2:70166704-70166723 | None:intergenic | 30.0% | |
| ATTCAACTTGATACCAAGTT+TGG | + | chr3_2:70166705-70166724 | None:intergenic | 30.0% | |
| CATATGTATATAGTCCAATC+AGG | + | chr3_2:70166855-70166874 | None:intergenic | 30.0% | |
| !! | ACTTTTGAAGATTATTGGAC+CGG | + | chr3_2:70167030-70167049 | None:intergenic | 30.0% |
| !! | ACATTCCATTGAGTTGAATT+AGG | + | chr3_2:70167197-70167216 | None:intergenic | 30.0% |
| AATAATTACCGCTGGAAATA+GGG | + | chr3_2:70167331-70167350 | None:intergenic | 30.0% | |
| TAATAATTACCGCTGGAAAT+AGG | + | chr3_2:70167332-70167351 | None:intergenic | 30.0% | |
| TGTGCCTCTAATAATGTTTA+AGG | - | chr3_2:70167408-70167427 | Msa0421290:CDS | 30.0% | |
| AGAAGACTCATTACTTGAAT+TGG | - | chr3_2:70167598-70167617 | Msa0421290:CDS | 30.0% | |
| GCTCAGAAAAATATAGGAAT+TGG | + | chr3_2:70167684-70167703 | None:intergenic | 30.0% | |
| ! | TAATGCAGTTACACTTTTGT+TGG | + | chr3_2:70166474-70166493 | None:intergenic | 30.0% |
| !! | TTATTATTTCTACTGTTGGC+TGG | - | chr3_2:70166491-70166510 | Msa0421290:three_prime_UTR | 30.0% |
| AAGTACAACAATCTATAGTG+GGG | + | chr3_2:70166616-70166635 | None:intergenic | 30.0% | |
| GAAGTACAACAATCTATAGT+GGG | + | chr3_2:70166617-70166636 | None:intergenic | 30.0% | |
| ! | CTTATCAAGGACTTGTTTAA+GGG | + | chr3_2:70166639-70166658 | None:intergenic | 30.0% |
| ! | TCTTATCAAGGACTTGTTTA+AGG | + | chr3_2:70166640-70166659 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTGGTCTTATCA+AGG | + | chr3_2:70166652-70166671 | None:intergenic | 30.0% |
| TTCAACTTGATACCAAGTTT+GGG | + | chr3_2:70166704-70166723 | None:intergenic | 30.0% | |
| ATTCAACTTGATACCAAGTT+TGG | + | chr3_2:70166705-70166724 | None:intergenic | 30.0% | |
| CATATGTATATAGTCCAATC+AGG | + | chr3_2:70166855-70166874 | None:intergenic | 30.0% | |
| !! | ACTTTTGAAGATTATTGGAC+CGG | + | chr3_2:70167030-70167049 | None:intergenic | 30.0% |
| !! | ACATTCCATTGAGTTGAATT+AGG | + | chr3_2:70167197-70167216 | None:intergenic | 30.0% |
| AATAATTACCGCTGGAAATA+GGG | + | chr3_2:70167331-70167350 | None:intergenic | 30.0% | |
| TAATAATTACCGCTGGAAAT+AGG | + | chr3_2:70167332-70167351 | None:intergenic | 30.0% | |
| TGTGCCTCTAATAATGTTTA+AGG | - | chr3_2:70167408-70167427 | Msa0421290:CDS | 30.0% | |
| AGAAGACTCATTACTTGAAT+TGG | - | chr3_2:70167598-70167617 | Msa0421290:CDS | 30.0% | |
| GCTCAGAAAAATATAGGAAT+TGG | + | chr3_2:70167684-70167703 | None:intergenic | 30.0% | |
| !! | GATAAACTTGTTACTCTTGC+TGG | - | chr3_2:70166557-70166576 | Msa0421290:three_prime_UTR | 35.0% |
| AGTACAACAATCTATAGTGG+GGG | + | chr3_2:70166615-70166634 | None:intergenic | 35.0% | |
| ! | GGAAGTACAACAATCTATAG+TGG | + | chr3_2:70166618-70166637 | None:intergenic | 35.0% |
| !!! | GAGGATACAGATGCATTTTT+TGG | + | chr3_2:70166663-70166682 | None:intergenic | 35.0% |
| TCAACTTGATACCAAGTTTG+GGG | + | chr3_2:70166703-70166722 | None:intergenic | 35.0% | |
| TTATGTATTAAGGGCCTGAT+TGG | - | chr3_2:70166838-70166857 | Msa0421290:CDS | 35.0% | |
| AAATAAGGCTTAATCATGGC+CGG | - | chr3_2:70167008-70167027 | Msa0421290:intron | 35.0% | |
| AATGTCTCATGTGACAAAAG+AGG | + | chr3_2:70167087-70167106 | None:intergenic | 35.0% | |
| ATAATTACCGCTGGAAATAG+GGG | + | chr3_2:70167330-70167349 | None:intergenic | 35.0% | |
| TCAAACTTGAACTTCAAGCT+AGG | + | chr3_2:70167560-70167579 | None:intergenic | 35.0% | |
| !! | GATAAACTTGTTACTCTTGC+TGG | - | chr3_2:70166557-70166576 | Msa0421290:three_prime_UTR | 35.0% |
| AGTACAACAATCTATAGTGG+GGG | + | chr3_2:70166615-70166634 | None:intergenic | 35.0% | |
| ! | GGAAGTACAACAATCTATAG+TGG | + | chr3_2:70166618-70166637 | None:intergenic | 35.0% |
| !!! | GAGGATACAGATGCATTTTT+TGG | + | chr3_2:70166663-70166682 | None:intergenic | 35.0% |
| TCAACTTGATACCAAGTTTG+GGG | + | chr3_2:70166703-70166722 | None:intergenic | 35.0% | |
| TTATGTATTAAGGGCCTGAT+TGG | - | chr3_2:70166838-70166857 | Msa0421290:CDS | 35.0% | |
| AAATAAGGCTTAATCATGGC+CGG | - | chr3_2:70167008-70167027 | Msa0421290:intron | 35.0% | |
| AATGTCTCATGTGACAAAAG+AGG | + | chr3_2:70167087-70167106 | None:intergenic | 35.0% | |
| ATAATTACCGCTGGAAATAG+GGG | + | chr3_2:70167330-70167349 | None:intergenic | 35.0% | |
| TCAAACTTGAACTTCAAGCT+AGG | + | chr3_2:70167560-70167579 | None:intergenic | 35.0% | |
| ! | ACAATCTATAGTGGGGGTAT+TGG | + | chr3_2:70166609-70166628 | None:intergenic | 40.0% |
| !! | TAGTAGCTTTACTTTTGCGC+CGG | - | chr3_2:70167164-70167183 | Msa0421290:intron | 40.0% |
| !! | ATTGAGTTGAATTAGGCACG+GGG | + | chr3_2:70167190-70167209 | None:intergenic | 40.0% |
| !! | CATTGAGTTGAATTAGGCAC+GGG | + | chr3_2:70167191-70167210 | None:intergenic | 40.0% |
| !! | CCATTGAGTTGAATTAGGCA+CGG | + | chr3_2:70167192-70167211 | None:intergenic | 40.0% |
| GGTGACAAATGTAGAAGATC+TGG | + | chr3_2:70167245-70167264 | None:intergenic | 40.0% | |
| TTCAAACACCTTAGCTTCAG+GGG | + | chr3_2:70167273-70167292 | None:intergenic | 40.0% | |
| CTTCAAACACCTTAGCTTCA+GGG | + | chr3_2:70167274-70167293 | None:intergenic | 40.0% | |
| ! | ATGTTTAAGGTTCTGCTGAG+AGG | - | chr3_2:70167421-70167440 | Msa0421290:CDS | 40.0% |
| ! | TGTTTAAGGTTCTGCTGAGA+GGG | - | chr3_2:70167422-70167441 | Msa0421290:CDS | 40.0% |
| !! | TCAAGTTCTGAGGAAAAGAG+TGG | - | chr3_2:70167453-70167472 | Msa0421290:CDS | 40.0% |
| ! | ACAATCTATAGTGGGGGTAT+TGG | + | chr3_2:70166609-70166628 | None:intergenic | 40.0% |
| !! | TAGTAGCTTTACTTTTGCGC+CGG | - | chr3_2:70167164-70167183 | Msa0421290:intron | 40.0% |
| !! | ATTGAGTTGAATTAGGCACG+GGG | + | chr3_2:70167190-70167209 | None:intergenic | 40.0% |
| !! | CATTGAGTTGAATTAGGCAC+GGG | + | chr3_2:70167191-70167210 | None:intergenic | 40.0% |
| !! | CCATTGAGTTGAATTAGGCA+CGG | + | chr3_2:70167192-70167211 | None:intergenic | 40.0% |
| GGTGACAAATGTAGAAGATC+TGG | + | chr3_2:70167245-70167264 | None:intergenic | 40.0% | |
| TTCAAACACCTTAGCTTCAG+GGG | + | chr3_2:70167273-70167292 | None:intergenic | 40.0% | |
| CTTCAAACACCTTAGCTTCA+GGG | + | chr3_2:70167274-70167293 | None:intergenic | 40.0% | |
| ! | ATGTTTAAGGTTCTGCTGAG+AGG | - | chr3_2:70167421-70167440 | Msa0421290:CDS | 40.0% |
| ! | TGTTTAAGGTTCTGCTGAGA+GGG | - | chr3_2:70167422-70167441 | Msa0421290:CDS | 40.0% |
| !! | TCAAGTTCTGAGGAAAAGAG+TGG | - | chr3_2:70167453-70167472 | Msa0421290:CDS | 40.0% |
| GGTCATTGCGATCTTTGATG+AGG | + | chr3_2:70166682-70166701 | None:intergenic | 45.0% | |
| GATGGTATGTGACAAGCGTT+TGG | + | chr3_2:70166749-70166768 | None:intergenic | 45.0% | |
| !! | GCTACTAAAGCCGTCGTTTT+TGG | + | chr3_2:70167151-70167170 | None:intergenic | 45.0% |
| CCGTGCCTAATTCAACTCAA+TGG | - | chr3_2:70167189-70167208 | Msa0421290:intron | 45.0% | |
| ACCTAAATCCCCTGAAGCTA+AGG | - | chr3_2:70167262-70167281 | Msa0421290:intron | 45.0% | |
| ACCTTAGCTTCAGGGGATTT+AGG | + | chr3_2:70167266-70167285 | None:intergenic | 45.0% | |
| CCTTCAAACACCTTAGCTTC+AGG | + | chr3_2:70167275-70167294 | None:intergenic | 45.0% | |
| ! | CCTGAAGCTAAGGTGTTTGA+AGG | - | chr3_2:70167272-70167291 | Msa0421290:intron | 45.0% |
| ! | GCTAAGGTGTTTGAAGGACT+TGG | - | chr3_2:70167278-70167297 | Msa0421290:intron | 45.0% |
| ! | AGGGGAGGAACTGTTTGTTT+TGG | + | chr3_2:70167312-70167331 | None:intergenic | 45.0% |
| ! | GTTTAAGGTTCTGCTGAGAG+GGG | - | chr3_2:70167423-70167442 | Msa0421290:CDS | 45.0% |
| !! | AGTTCTGAGGAAAAGAGTGG+TGG | - | chr3_2:70167456-70167475 | Msa0421290:CDS | 45.0% |
| !! | GAAAAGAGTGGTGGTGGATT+GGG | - | chr3_2:70167465-70167484 | Msa0421290:CDS | 45.0% |
| GGTCATTGCGATCTTTGATG+AGG | + | chr3_2:70166682-70166701 | None:intergenic | 45.0% | |
| GATGGTATGTGACAAGCGTT+TGG | + | chr3_2:70166749-70166768 | None:intergenic | 45.0% | |
| !! | GCTACTAAAGCCGTCGTTTT+TGG | + | chr3_2:70167151-70167170 | None:intergenic | 45.0% |
| CCGTGCCTAATTCAACTCAA+TGG | - | chr3_2:70167189-70167208 | Msa0421290:intron | 45.0% | |
| ACCTAAATCCCCTGAAGCTA+AGG | - | chr3_2:70167262-70167281 | Msa0421290:intron | 45.0% | |
| ACCTTAGCTTCAGGGGATTT+AGG | + | chr3_2:70167266-70167285 | None:intergenic | 45.0% | |
| CCTTCAAACACCTTAGCTTC+AGG | + | chr3_2:70167275-70167294 | None:intergenic | 45.0% | |
| ! | CCTGAAGCTAAGGTGTTTGA+AGG | - | chr3_2:70167272-70167291 | Msa0421290:intron | 45.0% |
| ! | GCTAAGGTGTTTGAAGGACT+TGG | - | chr3_2:70167278-70167297 | Msa0421290:intron | 45.0% |
| ! | AGGGGAGGAACTGTTTGTTT+TGG | + | chr3_2:70167312-70167331 | None:intergenic | 45.0% |
| ! | GTTTAAGGTTCTGCTGAGAG+GGG | - | chr3_2:70167423-70167442 | Msa0421290:CDS | 45.0% |
| !! | AGTTCTGAGGAAAAGAGTGG+TGG | - | chr3_2:70167456-70167475 | Msa0421290:CDS | 45.0% |
| !! | GAAAAGAGTGGTGGTGGATT+GGG | - | chr3_2:70167465-70167484 | Msa0421290:CDS | 45.0% |
| !! | TTAAAATGTTTATATAAATA+AGG | - | chr3_2:70166993-70167012 | Msa0421290:intron | 5.0% |
| !! | TTAAAATGTTTATATAAATA+AGG | - | chr3_2:70166993-70167012 | Msa0421290:intron | 5.0% |
| GCTGGTTGTCTTCCATACGT+TGG | - | chr3_2:70166575-70166594 | Msa0421290:three_prime_UTR | 50.0% | |
| GGTTGTCTTCCATACGTTGG+TGG | - | chr3_2:70166578-70166597 | Msa0421290:three_prime_UTR | 50.0% | |
| TTGGCACTACCACCAACGTA+TGG | + | chr3_2:70166590-70166609 | None:intergenic | 50.0% | |
| GATCGCAATGACCCCAAACT+TGG | - | chr3_2:70166689-70166708 | Msa0421290:CDS | 50.0% | |
| TGGAAGCTGTACAGCAAGAG+TGG | + | chr3_2:70166729-70166748 | None:intergenic | 50.0% | |
| TGTTGGTCGGCCAAAAACGA+CGG | - | chr3_2:70167138-70167157 | Msa0421290:intron | 50.0% | |
| AGTTCCTCCCCTATTTCCAG+CGG | - | chr3_2:70167320-70167339 | Msa0421290:intron | 50.0% | |
| ATTACCGCTGGAAATAGGGG+AGG | + | chr3_2:70167327-70167346 | None:intergenic | 50.0% | |
| GGGATCAAGCTCAAGTTCTG+AGG | - | chr3_2:70167443-70167462 | Msa0421290:CDS | 50.0% | |
| TCTGAGGAAAAGAGTGGTGG+TGG | - | chr3_2:70167459-70167478 | Msa0421290:CDS | 50.0% | |
| !! | GGAAAAGAGTGGTGGTGGAT+TGG | - | chr3_2:70167464-70167483 | Msa0421290:CDS | 50.0% |
| GCTGGTTGTCTTCCATACGT+TGG | - | chr3_2:70166575-70166594 | Msa0421290:three_prime_UTR | 50.0% | |
| GGTTGTCTTCCATACGTTGG+TGG | - | chr3_2:70166578-70166597 | Msa0421290:three_prime_UTR | 50.0% | |
| TTGGCACTACCACCAACGTA+TGG | + | chr3_2:70166590-70166609 | None:intergenic | 50.0% | |
| GATCGCAATGACCCCAAACT+TGG | - | chr3_2:70166689-70166708 | Msa0421290:CDS | 50.0% | |
| TGGAAGCTGTACAGCAAGAG+TGG | + | chr3_2:70166729-70166748 | None:intergenic | 50.0% | |
| TGTTGGTCGGCCAAAAACGA+CGG | - | chr3_2:70167138-70167157 | Msa0421290:intron | 50.0% | |
| AGTTCCTCCCCTATTTCCAG+CGG | - | chr3_2:70167320-70167339 | Msa0421290:intron | 50.0% | |
| ATTACCGCTGGAAATAGGGG+AGG | + | chr3_2:70167327-70167346 | None:intergenic | 50.0% | |
| GGGATCAAGCTCAAGTTCTG+AGG | - | chr3_2:70167443-70167462 | Msa0421290:CDS | 50.0% | |
| TCTGAGGAAAAGAGTGGTGG+TGG | - | chr3_2:70167459-70167478 | Msa0421290:CDS | 50.0% | |
| !! | GGAAAAGAGTGGTGGTGGAT+TGG | - | chr3_2:70167464-70167483 | Msa0421290:CDS | 50.0% |
| AGTTGAATTAGGCACGGGGC+CGG | + | chr3_2:70167186-70167205 | None:intergenic | 55.0% | |
| !! | AGAGTGGTGGTGGATTGGGA+AGG | - | chr3_2:70167469-70167488 | Msa0421290:CDS | 55.0% |
| AGTTGAATTAGGCACGGGGC+CGG | + | chr3_2:70167186-70167205 | None:intergenic | 55.0% | |
| !! | AGAGTGGTGGTGGATTGGGA+AGG | - | chr3_2:70167469-70167488 | Msa0421290:CDS | 55.0% |
| !! | GTGGTGGTGGATTGGGAAGG+AGG | - | chr3_2:70167472-70167491 | Msa0421290:CDS | 60.0% |
| !! | GTGGTGGATTGGGAAGGAGG+TGG | - | chr3_2:70167475-70167494 | Msa0421290:CDS | 60.0% |
| ! | TGGATTGGGAAGGAGGTGGC+TGG | - | chr3_2:70167479-70167498 | Msa0421290:CDS | 60.0% |
| ATTGGGAAGGAGGTGGCTGG+TGG | - | chr3_2:70167482-70167501 | Msa0421290:CDS | 60.0% | |
| !! | GTGGTGGTGGATTGGGAAGG+AGG | - | chr3_2:70167472-70167491 | Msa0421290:CDS | 60.0% |
| !! | GTGGTGGATTGGGAAGGAGG+TGG | - | chr3_2:70167475-70167494 | Msa0421290:CDS | 60.0% |
| ! | TGGATTGGGAAGGAGGTGGC+TGG | - | chr3_2:70167479-70167498 | Msa0421290:CDS | 60.0% |
| ATTGGGAAGGAGGTGGCTGG+TGG | - | chr3_2:70167482-70167501 | Msa0421290:CDS | 60.0% | |
| AAGGAGGTGGCTGGTGGCAG+AGG | - | chr3_2:70167488-70167507 | Msa0421290:CDS | 65.0% | |
| AAGGAGGTGGCTGGTGGCAG+AGG | - | chr3_2:70167488-70167507 | Msa0421290:CDS | 65.0% | |
| GAGGTGGCTGGTGGCAGAGG+TGG | - | chr3_2:70167491-70167510 | Msa0421290:CDS | 70.0% | |
| GAGGTGGCTGGTGGCAGAGG+TGG | - | chr3_2:70167491-70167510 | Msa0421290:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 70166461 | 70167711 | 70166461 | ID=Msa0421290;Name=Msa0421290 |
| chr3_2 | mRNA | 70166461 | 70167711 | 70166461 | ID=Msa0421290-mRNA-1;Parent=Msa0421290;Name=Msa0421290-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.33|1|1|1|3|145|184 |
| chr3_2 | exon | 70166461 | 70166742 | 70166461 | ID=Msa0421290-mRNA-1:exon:16817;Parent=Msa0421290-mRNA-1 |
| chr3_2 | exon | 70166831 | 70166926 | 70166831 | ID=Msa0421290-mRNA-1:exon:16816;Parent=Msa0421290-mRNA-1 |
| chr3_2 | exon | 70167390 | 70167711 | 70167390 | ID=Msa0421290-mRNA-1:exon:16815;Parent=Msa0421290-mRNA-1 |
| chr3_2 | CDS | 70167390 | 70167711 | 70167390 | ID=Msa0421290-mRNA-1:cds;Parent=Msa0421290-mRNA-1 |
| chr3_2 | CDS | 70166831 | 70166926 | 70166831 | ID=Msa0421290-mRNA-1:cds;Parent=Msa0421290-mRNA-1 |
| chr3_2 | CDS | 70166606 | 70166742 | 70166606 | ID=Msa0421290-mRNA-1:cds;Parent=Msa0421290-mRNA-1 |
| chr3_2 | three_prime_UTR | 70166461 | 70166605 | 70166461 | ID=Msa0421290-mRNA-1:three_prime_utr;Parent=Msa0421290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
