Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387890 | GAU46608.1 | 83.607 | 183 | 30 | 0 | 2 | 184 | 1 | 183 | 1.15e-100 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387890 | sp|F4I082|LTPG6_ARATH | 43.258 | 178 | 93 | 4 | 8 | 181 | 10 | 183 | 3.57e-43 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387890 | A0A2Z6NQM3 | 83.607 | 183 | 30 | 0 | 2 | 184 | 1 | 183 | 5.48e-101 | 298 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0387890 | 0.829242 | 5.743721e-55 | -8.615850e-47 |
| Msa0029730 | Msa0387890 | 0.815853 | 7.472589e-52 | -8.615850e-47 |
| Msa0032390 | Msa0387890 | 0.801583 | 8.409961e-49 | -8.615850e-47 |
| Msa0045620 | Msa0387890 | 0.814349 | 1.612161e-51 | -8.615850e-47 |
| Msa0050530 | Msa0387890 | 0.857252 | 1.852582e-62 | -8.615850e-47 |
| Msa0100600 | Msa0387890 | 0.806126 | 9.567707e-50 | -8.615850e-47 |
| Msa0100890 | Msa0387890 | 0.846784 | 1.747815e-59 | -8.615850e-47 |
| Msa0169710 | Msa0387890 | 0.806819 | 6.835239e-50 | -8.615850e-47 |
| Msa0185690 | Msa0387890 | 0.800637 | 1.312586e-48 | -8.615850e-47 |
| Msa0197920 | Msa0387890 | 0.811164 | 8.029861e-51 | -8.615850e-47 |
| Msa0219840 | Msa0387890 | 0.811819 | 5.783725e-51 | -8.615850e-47 |
| Msa0235080 | Msa0387890 | 0.823148 | 1.619177e-53 | -8.615850e-47 |
| Msa0372100 | Msa0387890 | 0.863872 | 1.825449e-64 | -8.615850e-47 |
| Msa0387890 | Msa0421290 | 0.926492 | 4.352766e-91 | -8.615850e-47 |
| Msa0387890 | Msa0467250 | 0.944297 | 2.525371e-103 | -8.615850e-47 |
| Msa0387890 | Msa0476730 | -0.808922 | 2.441377e-50 | -8.615850e-47 |
| Msa0387890 | Msa0527560 | 0.815625 | 8.400297e-52 | -8.615850e-47 |
| Msa0387890 | Msa0530660 | 0.802722 | 4.901275e-49 | -8.615850e-47 |
| Msa0387890 | Msa0566460 | 0.803941 | 2.741104e-49 | -8.615850e-47 |
| Msa0387890 | Msa0575950 | 0.803662 | 3.131875e-49 | -8.615850e-47 |
| Msa0387890 | Msa0576330 | 0.820970 | 5.175071e-53 | -8.615850e-47 |
| Msa0387890 | Msa0587180 | 0.814032 | 1.894227e-51 | -8.615850e-47 |
| Msa0387890 | Msa0623310 | 0.814566 | 1.443445e-51 | -8.615850e-47 |
| Msa0387890 | Msa0626980 | 0.801540 | 8.582853e-49 | -8.615850e-47 |
| Msa0387890 | Msa0627360 | 0.800107 | 1.683143e-48 | -8.615850e-47 |
| Msa0387890 | Msa0673940 | 0.822533 | 2.251569e-53 | -8.615850e-47 |
| Msa0387890 | Msa0687370 | 0.822069 | 2.885651e-53 | -8.615850e-47 |
| Msa0387890 | Msa0706690 | 0.846055 | 2.762093e-59 | -8.615850e-47 |
| Msa0387890 | Msa0716700 | 0.822050 | 2.914932e-53 | -8.615850e-47 |
| Msa0387890 | Msa0751720 | 0.811671 | 6.230237e-51 | -8.615850e-47 |
| Msa0387890 | Msa0772420 | 0.821511 | 3.884200e-53 | -8.615850e-47 |
| Msa0387890 | Msa0799170 | 0.801807 | 7.563391e-49 | -8.615850e-47 |
| Msa0387890 | Msa0831820 | 0.808585 | 2.881227e-50 | -8.615850e-47 |
| Msa0387890 | Msa0846900 | 0.800776 | 1.229833e-48 | -8.615850e-47 |
| Msa0387890 | Msa0876630 | 0.804332 | 2.272888e-49 | -8.615850e-47 |
| Msa0387890 | Msa0921340 | 0.819558 | 1.090702e-52 | -8.615850e-47 |
| Msa0387890 | Msa0987670 | 0.817432 | 3.307306e-52 | -8.615850e-47 |
| Msa0387890 | Msa1021560 | 0.814717 | 1.336541e-51 | -8.615850e-47 |
| Msa0387890 | Msa1060300 | 0.826875 | 2.133246e-54 | -8.615850e-47 |
| Msa0387890 | Msa1078300 | 0.802319 | 5.935747e-49 | -8.615850e-47 |
| Msa0387890 | Msa1085680 | 0.822905 | 1.844046e-53 | -8.615850e-47 |
| Msa0387890 | Msa1088260 | 0.986655 | 1.605923e-167 | -8.615850e-47 |
| Msa0387890 | Msa1105540 | 0.832976 | 6.951955e-56 | -8.615850e-47 |
| Msa0387890 | Msa1105580 | 0.821386 | 4.150788e-53 | -8.615850e-47 |
| Msa0387890 | Msa1128620 | 0.811873 | 5.630019e-51 | -8.615850e-47 |
| Msa0387890 | Msa1136890 | -0.811269 | 7.619863e-51 | -8.615850e-47 |
| Msa0387890 | Msa1148930 | 0.828770 | 7.474213e-55 | -8.615850e-47 |
| Msa0387890 | Msa1186260 | 0.829479 | 5.030109e-55 | -8.615850e-47 |
| Msa0387890 | Msa1200360 | 0.800890 | 1.165306e-48 | -8.615850e-47 |
| Msa0387890 | Msa1227760 | 0.811507 | 6.764728e-51 | -8.615850e-47 |
| Msa0387890 | Msa1250470 | 0.815125 | 1.085233e-51 | -8.615850e-47 |
| Msa0387890 | Msa1297470 | 0.826741 | 2.296726e-54 | -8.615850e-47 |
| Msa0387890 | Msa1343460 | 0.836524 | 8.897707e-57 | -8.615850e-47 |
| Msa0387890 | Msa1362590 | 0.812587 | 3.932378e-51 | -8.615850e-47 |
| Msa0387890 | Msa1368170 | 0.851128 | 1.085788e-60 | -8.615850e-47 |
| Msa0387890 | Msa1371270 | 0.833679 | 4.644249e-56 | -8.615850e-47 |
| Msa0387890 | Msa1371800 | 0.813394 | 2.616556e-51 | -8.615850e-47 |
| Msa0387890 | Msa1376310 | 0.815323 | 9.805039e-52 | -8.615850e-47 |
| Msa0387890 | Msa1385570 | 0.854670 | 1.054207e-61 | -8.615850e-47 |
| Msa0387890 | Msa1398490 | 0.803322 | 3.684247e-49 | -8.615850e-47 |
| Msa0387890 | Msa1409060 | 0.807494 | 4.917703e-50 | -8.615850e-47 |
| Msa0387890 | Msa1430250 | 0.817581 | 3.061952e-52 | -8.615850e-47 |
| Msa0260980 | Msa0387890 | 0.801163 | 1.024818e-48 | -8.615850e-47 |
| Msa0277320 | Msa0387890 | 0.818536 | 1.862216e-52 | -8.615850e-47 |
| Msa0317300 | Msa0387890 | 0.805530 | 1.276746e-49 | -8.615850e-47 |
| Msa0336430 | Msa0387890 | 0.804319 | 2.286863e-49 | -8.615850e-47 |
| Msa0336460 | Msa0387890 | 0.804652 | 1.949614e-49 | -8.615850e-47 |
| Msa0336520 | Msa0387890 | 0.826203 | 3.084963e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387890 | MtrunA17_Chr3g0121381 | 90.270 | 185 | 16 | 1 | 1 | 183 | 1 | 185 | 9.99e-98 | 280 |
| Msa0387890 | MtrunA17_Chr8g0378461 | 50.829 | 181 | 83 | 3 | 9 | 183 | 14 | 194 | 4.29e-66 | 201 |
| Msa0387890 | MtrunA17_Chr8g0356191 | 39.487 | 195 | 105 | 6 | 1 | 182 | 1 | 195 | 8.21e-37 | 126 |
| Msa0387890 | MtrunA17_Chr7g0219391 | 48.000 | 100 | 52 | 0 | 8 | 107 | 12 | 111 | 8.80e-30 | 106 |
| Msa0387890 | MtrunA17_Chr1g0205181 | 33.083 | 133 | 81 | 2 | 12 | 144 | 15 | 139 | 1.42e-13 | 65.1 |
| Msa0387890 | MtrunA17_Chr1g0205201 | 36.667 | 90 | 55 | 2 | 12 | 101 | 10 | 97 | 1.82e-12 | 62.0 |
| Msa0387890 | MtrunA17_Chr1g0205191 | 39.189 | 74 | 42 | 2 | 28 | 101 | 25 | 95 | 8.24e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387890 | AT1G55260.1 | 43.258 | 178 | 93 | 4 | 8 | 181 | 53 | 226 | 7.16e-44 | 145 |
| Msa0387890 | AT1G55260.2 | 43.258 | 178 | 90 | 5 | 8 | 181 | 53 | 223 | 2.29e-43 | 144 |
| Msa0387890 | AT2G44300.1 | 39.796 | 196 | 96 | 5 | 7 | 183 | 11 | 203 | 1.43e-40 | 136 |
| Msa0387890 | AT2G44290.1 | 38.579 | 197 | 96 | 4 | 9 | 183 | 11 | 204 | 1.65e-40 | 136 |
| Msa0387890 | AT3G58550.1 | 38.926 | 149 | 84 | 4 | 4 | 145 | 9 | 157 | 6.72e-30 | 108 |
| Msa0387890 | AT1G03103.1 | 31.915 | 94 | 64 | 0 | 8 | 101 | 2 | 95 | 1.96e-14 | 68.2 |
| Msa0387890 | AT5G09370.2 | 37.736 | 106 | 61 | 2 | 24 | 127 | 21 | 123 | 3.23e-14 | 66.6 |
| Msa0387890 | AT5G09370.3 | 37.600 | 125 | 64 | 5 | 24 | 138 | 21 | 141 | 3.83e-14 | 67.0 |
| Msa0387890 | AT2G48130.2 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0387890 | AT2G48130.6 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0387890 | AT2G48130.4 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0387890 | AT2G48130.5 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0387890 | AT2G48130.1 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0387890 | AT2G48130.3 | 36.559 | 93 | 57 | 2 | 10 | 101 | 8 | 99 | 4.30e-14 | 67.4 |
| Msa0387890 | AT5G09370.1 | 39.175 | 97 | 54 | 2 | 24 | 118 | 21 | 114 | 6.19e-14 | 66.6 |
| Msa0387890 | AT1G73890.1 | 39.189 | 74 | 45 | 0 | 31 | 104 | 30 | 103 | 7.58e-14 | 67.0 |
| Msa0387890 | AT3G22600.1 | 28.188 | 149 | 95 | 5 | 10 | 150 | 6 | 150 | 2.56e-12 | 62.4 |
| Msa0387890 | AT4G14815.1 | 30.000 | 90 | 62 | 1 | 12 | 101 | 7 | 95 | 4.51e-11 | 58.9 |
Find 54 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAATTACCGCTGGAAAT+AGG | 0.158824 | 3_1:-91995194 | None:intergenic |
| TCTTATCAAGGACTTGTTTA+AGG | 0.173161 | 3_1:-91994502 | None:intergenic |
| ACCTTAGCTTCAGGGGATTT+AGG | 0.238114 | 3_1:-91995128 | None:intergenic |
| TGAATTGGATATATTGATAT+TGG | 0.256594 | 3_1:+91995478 | Msa0387890:three_prime_UTR |
| AATAATTACCGCTGGAAATA+GGG | 0.274317 | 3_1:-91995193 | None:intergenic |
| AGAAGACTCATTACTTGAAT+TGG | 0.276229 | 3_1:+91995463 | Msa0387890:three_prime_UTR |
| AAGGAGGTGGCTGGTGGCAG+AGG | 0.280788 | 3_1:+91995353 | Msa0387890:CDS |
| ATTCAACTTGATACCAAGTT+TGG | 0.282616 | 3_1:-91994567 | None:intergenic |
| GATAAACTTGTTACTCTTGC+TGG | 0.316761 | 3_1:+91994422 | Msa0387890:CDS |
| CCTTCAAACACCTTAGCTTC+AGG | 0.355634 | 3_1:-91995137 | None:intergenic |
| TTCAACTTGATACCAAGTTT+GGG | 0.358716 | 3_1:-91994566 | None:intergenic |
| ACACATTCAGTTATATTAGA+TGG | 0.359046 | 3_1:-91994629 | None:intergenic |
| TGGATTGGGAAGGAGGTGGC+TGG | 0.375917 | 3_1:+91995344 | Msa0387890:CDS |
| AGGGGAGGAACTGTTTGTTT+TGG | 0.377595 | 3_1:-91995174 | None:intergenic |
| GAAAAGAGTGGTGGTGGATT+GGG | 0.380896 | 3_1:+91995330 | Msa0387890:CDS |
| TGCATTATTATTTCTACTGT+TGG | 0.388007 | 3_1:+91994352 | Msa0387890:CDS |
| TTATTATTTCTACTGTTGGC+TGG | 0.403176 | 3_1:+91994356 | Msa0387890:CDS |
| CTTATCAAGGACTTGTTTAA+GGG | 0.407090 | 3_1:-91994501 | None:intergenic |
| GATGGTATGTGACAAGCGTT+TGG | 0.413443 | 3_1:-91994611 | None:intergenic |
| TGGATATATTGATATTGGTT+TGG | 0.429814 | 3_1:+91995483 | Msa0387890:three_prime_UTR |
| GGAAAAGAGTGGTGGTGGAT+TGG | 0.435272 | 3_1:+91995329 | Msa0387890:CDS |
| GCTAAGGTGTTTGAAGGACT+TGG | 0.437073 | 3_1:+91995143 | Msa0387890:CDS |
| GAGGTGGCTGGTGGCAGAGG+TGG | 0.447551 | 3_1:+91995356 | Msa0387890:CDS |
| AAGTGAGATATGAAAAGAAA+TGG | 0.450601 | 3_1:-91995393 | None:intergenic |
| GGAAGTACAACAATCTATAG+TGG | 0.456166 | 3_1:-91994480 | None:intergenic |
| CTTCAAACACCTTAGCTTCA+GGG | 0.472455 | 3_1:-91995136 | None:intergenic |
| ACCTAAATCCCCTGAAGCTA+AGG | 0.474094 | 3_1:+91995127 | Msa0387890:CDS |
| CCTGAAGCTAAGGTGTTTGA+AGG | 0.476875 | 3_1:+91995137 | Msa0387890:CDS |
| GATCGCAATGACCCCAAACT+TGG | 0.492547 | 3_1:+91994554 | Msa0387890:CDS |
| GTGGTGGATTGGGAAGGAGG+TGG | 0.495091 | 3_1:+91995340 | Msa0387890:CDS |
| GTGGTGGTGGATTGGGAAGG+AGG | 0.496077 | 3_1:+91995337 | Msa0387890:CDS |
| TCTGAGGAAAAGAGTGGTGG+TGG | 0.499326 | 3_1:+91995324 | Msa0387890:CDS |
| TGTTTAAGGTTCTGCTGAGA+GGG | 0.503753 | 3_1:+91995287 | Msa0387890:intron |
| GAAGTACAACAATCTATAGT+GGG | 0.507467 | 3_1:-91994479 | None:intergenic |
| ATTGGGAAGGAGGTGGCTGG+TGG | 0.530641 | 3_1:+91995347 | Msa0387890:CDS |
| TCAAACTTGAACTTCAAGCT+AGG | 0.546383 | 3_1:-91995422 | None:intergenic |
| TTCAAACACCTTAGCTTCAG+GGG | 0.554009 | 3_1:-91995135 | None:intergenic |
| ATAATTACCGCTGGAAATAG+GGG | 0.565206 | 3_1:-91995192 | None:intergenic |
| GGTTGTCTTCCATACGTTGG+TGG | 0.578596 | 3_1:+91994443 | Msa0387890:CDS |
| GCTGGTTGTCTTCCATACGT+TGG | 0.583066 | 3_1:+91994440 | Msa0387890:CDS |
| TTGGCACTACCACCAACGTA+TGG | 0.586024 | 3_1:-91994452 | None:intergenic |
| TGGAAGCTGTACAGCAAGAG+TGG | 0.593369 | 3_1:-91994591 | None:intergenic |
| TCAACTTGATACCAAGTTTG+GGG | 0.608436 | 3_1:-91994565 | None:intergenic |
| ATGTTTAAGGTTCTGCTGAG+AGG | 0.614875 | 3_1:+91995286 | Msa0387890:intron |
| AGAGTGGTGGTGGATTGGGA+AGG | 0.615185 | 3_1:+91995334 | Msa0387890:CDS |
| GGGATCAAGCTCAAGTTCTG+AGG | 0.620498 | 3_1:+91995308 | Msa0387890:CDS |
| GGTCATTGCGATCTTTGATG+AGG | 0.621163 | 3_1:-91994544 | None:intergenic |
| GTTTAAGGTTCTGCTGAGAG+GGG | 0.633464 | 3_1:+91995288 | Msa0387890:intron |
| AAGTACAACAATCTATAGTG+GGG | 0.642782 | 3_1:-91994478 | None:intergenic |
| AGTTCCTCCCCTATTTCCAG+CGG | 0.660557 | 3_1:+91995185 | Msa0387890:CDS |
| ATTACCGCTGGAAATAGGGG+AGG | 0.669828 | 3_1:-91995189 | None:intergenic |
| TCAAGTTCTGAGGAAAAGAG+TGG | 0.677014 | 3_1:+91995318 | Msa0387890:CDS |
| AGTACAACAATCTATAGTGG+GGG | 0.691483 | 3_1:-91994477 | None:intergenic |
| AGTTCTGAGGAAAAGAGTGG+TGG | 0.693229 | 3_1:+91995321 | Msa0387890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGAGAATTTTTTTTTGT+TGG | + | chr3_1:91994986-91995005 | Msa0387890:intron | 15.0% |
| !!! | TAATGAGAATTTTTTTTTGT+TGG | + | chr3_1:91994986-91995005 | Msa0387890:intron | 15.0% |
| !!! | TTAGTTTGCTTTATGTATTA+AGG | + | chr3_1:91994693-91994712 | Msa0387890:intron | 20.0% |
| !!! | TAGTTTGCTTTATGTATTAA+GGG | + | chr3_1:91994694-91994713 | Msa0387890:intron | 20.0% |
| !! | ATATAAATAAGGCTTAATCA+TGG | + | chr3_1:91994869-91994888 | Msa0387890:intron | 20.0% |
| !! | AAAATTATAATAATTACCGC+TGG | - | chr3_1:91995204-91995223 | None:intergenic | 20.0% |
| !! | TGAATTGGATATATTGATAT+TGG | + | chr3_1:91995478-91995497 | Msa0387890:three_prime_UTR | 20.0% |
| !!! | TTAGTTTGCTTTATGTATTA+AGG | + | chr3_1:91994693-91994712 | Msa0387890:intron | 20.0% |
| !!! | TAGTTTGCTTTATGTATTAA+GGG | + | chr3_1:91994694-91994713 | Msa0387890:intron | 20.0% |
| !! | ATATAAATAAGGCTTAATCA+TGG | + | chr3_1:91994869-91994888 | Msa0387890:intron | 20.0% |
| !! | AAAATTATAATAATTACCGC+TGG | - | chr3_1:91995204-91995223 | None:intergenic | 20.0% |
| !! | TGAATTGGATATATTGATAT+TGG | + | chr3_1:91995478-91995497 | Msa0387890:three_prime_UTR | 20.0% |
| !!! | TGCATTATTATTTCTACTGT+TGG | + | chr3_1:91994352-91994371 | Msa0387890:CDS | 25.0% |
| ! | ACACATTCAGTTATATTAGA+TGG | - | chr3_1:91994632-91994651 | None:intergenic | 25.0% |
| ! | TCTAATATAACTGAATGTGT+AGG | + | chr3_1:91994632-91994651 | Msa0387890:intron | 25.0% |
| !!! | CACTTACTTTTGAAGATTAT+TGG | - | chr3_1:91994900-91994919 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTG+AGG | + | chr3_1:91994900-91994919 | Msa0387890:intron | 25.0% |
| !!! | GAGAATTTTTTTTTGTTGGT+CGG | + | chr3_1:91994990-91995009 | Msa0387890:intron | 25.0% |
| ! | AGAACCTTAAACATTATTAG+AGG | - | chr3_1:91995280-91995299 | None:intergenic | 25.0% |
| ! | AAGTGAGATATGAAAAGAAA+TGG | - | chr3_1:91995396-91995415 | None:intergenic | 25.0% |
| !! | TGGATATATTGATATTGGTT+TGG | + | chr3_1:91995483-91995502 | Msa0387890:three_prime_UTR | 25.0% |
| ! | CTCAGAAAAATATAGGAATT+GGG | - | chr3_1:91995557-91995576 | None:intergenic | 25.0% |
| !! | GAATTTGCTCAGAAAAATAT+AGG | - | chr3_1:91995564-91995583 | None:intergenic | 25.0% |
| !!! | TGCATTATTATTTCTACTGT+TGG | + | chr3_1:91994352-91994371 | Msa0387890:CDS | 25.0% |
| ! | ACACATTCAGTTATATTAGA+TGG | - | chr3_1:91994632-91994651 | None:intergenic | 25.0% |
| ! | TCTAATATAACTGAATGTGT+AGG | + | chr3_1:91994632-91994651 | Msa0387890:intron | 25.0% |
| !!! | CACTTACTTTTGAAGATTAT+TGG | - | chr3_1:91994900-91994919 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTG+AGG | + | chr3_1:91994900-91994919 | Msa0387890:intron | 25.0% |
| !!! | GAGAATTTTTTTTTGTTGGT+CGG | + | chr3_1:91994990-91995009 | Msa0387890:intron | 25.0% |
| ! | AGAACCTTAAACATTATTAG+AGG | - | chr3_1:91995280-91995299 | None:intergenic | 25.0% |
| ! | AAGTGAGATATGAAAAGAAA+TGG | - | chr3_1:91995396-91995415 | None:intergenic | 25.0% |
| !! | TGGATATATTGATATTGGTT+TGG | + | chr3_1:91995483-91995502 | Msa0387890:three_prime_UTR | 25.0% |
| ! | CTCAGAAAAATATAGGAATT+GGG | - | chr3_1:91995557-91995576 | None:intergenic | 25.0% |
| !! | GAATTTGCTCAGAAAAATAT+AGG | - | chr3_1:91995564-91995583 | None:intergenic | 25.0% |
| ! | TAATGCAGTTACACTTTTGT+TGG | - | chr3_1:91994339-91994358 | None:intergenic | 30.0% |
| !! | TTATTATTTCTACTGTTGGC+TGG | + | chr3_1:91994356-91994375 | Msa0387890:CDS | 30.0% |
| AAGTACAACAATCTATAGTG+GGG | - | chr3_1:91994481-91994500 | None:intergenic | 30.0% | |
| GAAGTACAACAATCTATAGT+GGG | - | chr3_1:91994482-91994501 | None:intergenic | 30.0% | |
| ! | CTTATCAAGGACTTGTTTAA+GGG | - | chr3_1:91994504-91994523 | None:intergenic | 30.0% |
| ! | TCTTATCAAGGACTTGTTTA+AGG | - | chr3_1:91994505-91994524 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTGGTCTTATCA+AGG | - | chr3_1:91994517-91994536 | None:intergenic | 30.0% |
| TTCAACTTGATACCAAGTTT+GGG | - | chr3_1:91994569-91994588 | None:intergenic | 30.0% | |
| ATTCAACTTGATACCAAGTT+TGG | - | chr3_1:91994570-91994589 | None:intergenic | 30.0% | |
| CATATGTATATAGTCCAATC+AGG | - | chr3_1:91994720-91994739 | None:intergenic | 30.0% | |
| !! | ACTTTTGAAGATTATTGGAC+CGG | - | chr3_1:91994895-91994914 | None:intergenic | 30.0% |
| !! | ACATTCCATTGAGTTGAATT+AGG | - | chr3_1:91995062-91995081 | None:intergenic | 30.0% |
| AATAATTACCGCTGGAAATA+GGG | - | chr3_1:91995196-91995215 | None:intergenic | 30.0% | |
| TAATAATTACCGCTGGAAAT+AGG | - | chr3_1:91995197-91995216 | None:intergenic | 30.0% | |
| TGTGCCTCTAATAATGTTTA+AGG | + | chr3_1:91995273-91995292 | Msa0387890:intron | 30.0% | |
| AGAAGACTCATTACTTGAAT+TGG | + | chr3_1:91995463-91995482 | Msa0387890:three_prime_UTR | 30.0% | |
| GCTCAGAAAAATATAGGAAT+TGG | - | chr3_1:91995558-91995577 | None:intergenic | 30.0% | |
| ! | TAATGCAGTTACACTTTTGT+TGG | - | chr3_1:91994339-91994358 | None:intergenic | 30.0% |
| !! | TTATTATTTCTACTGTTGGC+TGG | + | chr3_1:91994356-91994375 | Msa0387890:CDS | 30.0% |
| AAGTACAACAATCTATAGTG+GGG | - | chr3_1:91994481-91994500 | None:intergenic | 30.0% | |
| GAAGTACAACAATCTATAGT+GGG | - | chr3_1:91994482-91994501 | None:intergenic | 30.0% | |
| ! | CTTATCAAGGACTTGTTTAA+GGG | - | chr3_1:91994504-91994523 | None:intergenic | 30.0% |
| ! | TCTTATCAAGGACTTGTTTA+AGG | - | chr3_1:91994505-91994524 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTGGTCTTATCA+AGG | - | chr3_1:91994517-91994536 | None:intergenic | 30.0% |
| TTCAACTTGATACCAAGTTT+GGG | - | chr3_1:91994569-91994588 | None:intergenic | 30.0% | |
| ATTCAACTTGATACCAAGTT+TGG | - | chr3_1:91994570-91994589 | None:intergenic | 30.0% | |
| CATATGTATATAGTCCAATC+AGG | - | chr3_1:91994720-91994739 | None:intergenic | 30.0% | |
| !! | ACTTTTGAAGATTATTGGAC+CGG | - | chr3_1:91994895-91994914 | None:intergenic | 30.0% |
| !! | ACATTCCATTGAGTTGAATT+AGG | - | chr3_1:91995062-91995081 | None:intergenic | 30.0% |
| AATAATTACCGCTGGAAATA+GGG | - | chr3_1:91995196-91995215 | None:intergenic | 30.0% | |
| TAATAATTACCGCTGGAAAT+AGG | - | chr3_1:91995197-91995216 | None:intergenic | 30.0% | |
| TGTGCCTCTAATAATGTTTA+AGG | + | chr3_1:91995273-91995292 | Msa0387890:intron | 30.0% | |
| AGAAGACTCATTACTTGAAT+TGG | + | chr3_1:91995463-91995482 | Msa0387890:three_prime_UTR | 30.0% | |
| GCTCAGAAAAATATAGGAAT+TGG | - | chr3_1:91995558-91995577 | None:intergenic | 30.0% | |
| !! | GATAAACTTGTTACTCTTGC+TGG | + | chr3_1:91994422-91994441 | Msa0387890:CDS | 35.0% |
| AGTACAACAATCTATAGTGG+GGG | - | chr3_1:91994480-91994499 | None:intergenic | 35.0% | |
| ! | GGAAGTACAACAATCTATAG+TGG | - | chr3_1:91994483-91994502 | None:intergenic | 35.0% |
| !!! | GAGGATACAGATGCATTTTT+TGG | - | chr3_1:91994528-91994547 | None:intergenic | 35.0% |
| TCAACTTGATACCAAGTTTG+GGG | - | chr3_1:91994568-91994587 | None:intergenic | 35.0% | |
| TTATGTATTAAGGGCCTGAT+TGG | + | chr3_1:91994703-91994722 | Msa0387890:intron | 35.0% | |
| AAATAAGGCTTAATCATGGC+CGG | + | chr3_1:91994873-91994892 | Msa0387890:intron | 35.0% | |
| AATGTCTCATGTGACAAAAG+AGG | - | chr3_1:91994952-91994971 | None:intergenic | 35.0% | |
| ATAATTACCGCTGGAAATAG+GGG | - | chr3_1:91995195-91995214 | None:intergenic | 35.0% | |
| TCAAACTTGAACTTCAAGCT+AGG | - | chr3_1:91995425-91995444 | None:intergenic | 35.0% | |
| !! | GATAAACTTGTTACTCTTGC+TGG | + | chr3_1:91994422-91994441 | Msa0387890:CDS | 35.0% |
| AGTACAACAATCTATAGTGG+GGG | - | chr3_1:91994480-91994499 | None:intergenic | 35.0% | |
| ! | GGAAGTACAACAATCTATAG+TGG | - | chr3_1:91994483-91994502 | None:intergenic | 35.0% |
| !!! | GAGGATACAGATGCATTTTT+TGG | - | chr3_1:91994528-91994547 | None:intergenic | 35.0% |
| TCAACTTGATACCAAGTTTG+GGG | - | chr3_1:91994568-91994587 | None:intergenic | 35.0% | |
| TTATGTATTAAGGGCCTGAT+TGG | + | chr3_1:91994703-91994722 | Msa0387890:intron | 35.0% | |
| AAATAAGGCTTAATCATGGC+CGG | + | chr3_1:91994873-91994892 | Msa0387890:intron | 35.0% | |
| AATGTCTCATGTGACAAAAG+AGG | - | chr3_1:91994952-91994971 | None:intergenic | 35.0% | |
| ATAATTACCGCTGGAAATAG+GGG | - | chr3_1:91995195-91995214 | None:intergenic | 35.0% | |
| TCAAACTTGAACTTCAAGCT+AGG | - | chr3_1:91995425-91995444 | None:intergenic | 35.0% | |
| ! | ACAATCTATAGTGGGGGTAT+TGG | - | chr3_1:91994474-91994493 | None:intergenic | 40.0% |
| !! | TAGTAGCTTTACTTTTGCGC+CGG | + | chr3_1:91995029-91995048 | Msa0387890:intron | 40.0% |
| !! | ATTGAGTTGAATTAGGCACG+GGG | - | chr3_1:91995055-91995074 | None:intergenic | 40.0% |
| !! | CATTGAGTTGAATTAGGCAC+GGG | - | chr3_1:91995056-91995075 | None:intergenic | 40.0% |
| !! | CCATTGAGTTGAATTAGGCA+CGG | - | chr3_1:91995057-91995076 | None:intergenic | 40.0% |
| GGTGACAAATGTAGAAGATC+TGG | - | chr3_1:91995110-91995129 | None:intergenic | 40.0% | |
| TTCAAACACCTTAGCTTCAG+GGG | - | chr3_1:91995138-91995157 | None:intergenic | 40.0% | |
| CTTCAAACACCTTAGCTTCA+GGG | - | chr3_1:91995139-91995158 | None:intergenic | 40.0% | |
| ! | ATGTTTAAGGTTCTGCTGAG+AGG | + | chr3_1:91995286-91995305 | Msa0387890:intron | 40.0% |
| ! | TGTTTAAGGTTCTGCTGAGA+GGG | + | chr3_1:91995287-91995306 | Msa0387890:intron | 40.0% |
| !! | TCAAGTTCTGAGGAAAAGAG+TGG | + | chr3_1:91995318-91995337 | Msa0387890:CDS | 40.0% |
| ! | ACAATCTATAGTGGGGGTAT+TGG | - | chr3_1:91994474-91994493 | None:intergenic | 40.0% |
| !! | TAGTAGCTTTACTTTTGCGC+CGG | + | chr3_1:91995029-91995048 | Msa0387890:intron | 40.0% |
| !! | ATTGAGTTGAATTAGGCACG+GGG | - | chr3_1:91995055-91995074 | None:intergenic | 40.0% |
| !! | CATTGAGTTGAATTAGGCAC+GGG | - | chr3_1:91995056-91995075 | None:intergenic | 40.0% |
| !! | CCATTGAGTTGAATTAGGCA+CGG | - | chr3_1:91995057-91995076 | None:intergenic | 40.0% |
| GGTGACAAATGTAGAAGATC+TGG | - | chr3_1:91995110-91995129 | None:intergenic | 40.0% | |
| TTCAAACACCTTAGCTTCAG+GGG | - | chr3_1:91995138-91995157 | None:intergenic | 40.0% | |
| CTTCAAACACCTTAGCTTCA+GGG | - | chr3_1:91995139-91995158 | None:intergenic | 40.0% | |
| ! | ATGTTTAAGGTTCTGCTGAG+AGG | + | chr3_1:91995286-91995305 | Msa0387890:intron | 40.0% |
| ! | TGTTTAAGGTTCTGCTGAGA+GGG | + | chr3_1:91995287-91995306 | Msa0387890:intron | 40.0% |
| !! | TCAAGTTCTGAGGAAAAGAG+TGG | + | chr3_1:91995318-91995337 | Msa0387890:CDS | 40.0% |
| GGTCATTGCGATCTTTGATG+AGG | - | chr3_1:91994547-91994566 | None:intergenic | 45.0% | |
| GATGGTATGTGACAAGCGTT+TGG | - | chr3_1:91994614-91994633 | None:intergenic | 45.0% | |
| !! | GCTACTAAAGCCGTCGTTTT+TGG | - | chr3_1:91995016-91995035 | None:intergenic | 45.0% |
| CCGTGCCTAATTCAACTCAA+TGG | + | chr3_1:91995054-91995073 | Msa0387890:intron | 45.0% | |
| ACCTAAATCCCCTGAAGCTA+AGG | + | chr3_1:91995127-91995146 | Msa0387890:CDS | 45.0% | |
| ACCTTAGCTTCAGGGGATTT+AGG | - | chr3_1:91995131-91995150 | None:intergenic | 45.0% | |
| CCTTCAAACACCTTAGCTTC+AGG | - | chr3_1:91995140-91995159 | None:intergenic | 45.0% | |
| ! | CCTGAAGCTAAGGTGTTTGA+AGG | + | chr3_1:91995137-91995156 | Msa0387890:CDS | 45.0% |
| ! | GCTAAGGTGTTTGAAGGACT+TGG | + | chr3_1:91995143-91995162 | Msa0387890:CDS | 45.0% |
| ! | AGGGGAGGAACTGTTTGTTT+TGG | - | chr3_1:91995177-91995196 | None:intergenic | 45.0% |
| ! | GTTTAAGGTTCTGCTGAGAG+GGG | + | chr3_1:91995288-91995307 | Msa0387890:intron | 45.0% |
| !! | AGTTCTGAGGAAAAGAGTGG+TGG | + | chr3_1:91995321-91995340 | Msa0387890:CDS | 45.0% |
| !! | GAAAAGAGTGGTGGTGGATT+GGG | + | chr3_1:91995330-91995349 | Msa0387890:CDS | 45.0% |
| GGTCATTGCGATCTTTGATG+AGG | - | chr3_1:91994547-91994566 | None:intergenic | 45.0% | |
| GATGGTATGTGACAAGCGTT+TGG | - | chr3_1:91994614-91994633 | None:intergenic | 45.0% | |
| !! | GCTACTAAAGCCGTCGTTTT+TGG | - | chr3_1:91995016-91995035 | None:intergenic | 45.0% |
| CCGTGCCTAATTCAACTCAA+TGG | + | chr3_1:91995054-91995073 | Msa0387890:intron | 45.0% | |
| ACCTAAATCCCCTGAAGCTA+AGG | + | chr3_1:91995127-91995146 | Msa0387890:CDS | 45.0% | |
| ACCTTAGCTTCAGGGGATTT+AGG | - | chr3_1:91995131-91995150 | None:intergenic | 45.0% | |
| CCTTCAAACACCTTAGCTTC+AGG | - | chr3_1:91995140-91995159 | None:intergenic | 45.0% | |
| ! | CCTGAAGCTAAGGTGTTTGA+AGG | + | chr3_1:91995137-91995156 | Msa0387890:CDS | 45.0% |
| ! | GCTAAGGTGTTTGAAGGACT+TGG | + | chr3_1:91995143-91995162 | Msa0387890:CDS | 45.0% |
| ! | AGGGGAGGAACTGTTTGTTT+TGG | - | chr3_1:91995177-91995196 | None:intergenic | 45.0% |
| ! | GTTTAAGGTTCTGCTGAGAG+GGG | + | chr3_1:91995288-91995307 | Msa0387890:intron | 45.0% |
| !! | AGTTCTGAGGAAAAGAGTGG+TGG | + | chr3_1:91995321-91995340 | Msa0387890:CDS | 45.0% |
| !! | GAAAAGAGTGGTGGTGGATT+GGG | + | chr3_1:91995330-91995349 | Msa0387890:CDS | 45.0% |
| !! | TTAAAATGTTTATATAAATA+AGG | + | chr3_1:91994858-91994877 | Msa0387890:intron | 5.0% |
| !! | TTAAAATGTTTATATAAATA+AGG | + | chr3_1:91994858-91994877 | Msa0387890:intron | 5.0% |
| GCTGGTTGTCTTCCATACGT+TGG | + | chr3_1:91994440-91994459 | Msa0387890:CDS | 50.0% | |
| GGTTGTCTTCCATACGTTGG+TGG | + | chr3_1:91994443-91994462 | Msa0387890:CDS | 50.0% | |
| TTGGCACTACCACCAACGTA+TGG | - | chr3_1:91994455-91994474 | None:intergenic | 50.0% | |
| GATCGCAATGACCCCAAACT+TGG | + | chr3_1:91994554-91994573 | Msa0387890:CDS | 50.0% | |
| TGGAAGCTGTACAGCAAGAG+TGG | - | chr3_1:91994594-91994613 | None:intergenic | 50.0% | |
| TGTTGGTCGGCCAAAAACGA+CGG | + | chr3_1:91995003-91995022 | Msa0387890:intron | 50.0% | |
| AGTTCCTCCCCTATTTCCAG+CGG | + | chr3_1:91995185-91995204 | Msa0387890:CDS | 50.0% | |
| ATTACCGCTGGAAATAGGGG+AGG | - | chr3_1:91995192-91995211 | None:intergenic | 50.0% | |
| GGGATCAAGCTCAAGTTCTG+AGG | + | chr3_1:91995308-91995327 | Msa0387890:CDS | 50.0% | |
| TCTGAGGAAAAGAGTGGTGG+TGG | + | chr3_1:91995324-91995343 | Msa0387890:CDS | 50.0% | |
| !! | GGAAAAGAGTGGTGGTGGAT+TGG | + | chr3_1:91995329-91995348 | Msa0387890:CDS | 50.0% |
| GCTGGTTGTCTTCCATACGT+TGG | + | chr3_1:91994440-91994459 | Msa0387890:CDS | 50.0% | |
| GGTTGTCTTCCATACGTTGG+TGG | + | chr3_1:91994443-91994462 | Msa0387890:CDS | 50.0% | |
| TTGGCACTACCACCAACGTA+TGG | - | chr3_1:91994455-91994474 | None:intergenic | 50.0% | |
| GATCGCAATGACCCCAAACT+TGG | + | chr3_1:91994554-91994573 | Msa0387890:CDS | 50.0% | |
| TGGAAGCTGTACAGCAAGAG+TGG | - | chr3_1:91994594-91994613 | None:intergenic | 50.0% | |
| TGTTGGTCGGCCAAAAACGA+CGG | + | chr3_1:91995003-91995022 | Msa0387890:intron | 50.0% | |
| AGTTCCTCCCCTATTTCCAG+CGG | + | chr3_1:91995185-91995204 | Msa0387890:CDS | 50.0% | |
| ATTACCGCTGGAAATAGGGG+AGG | - | chr3_1:91995192-91995211 | None:intergenic | 50.0% | |
| GGGATCAAGCTCAAGTTCTG+AGG | + | chr3_1:91995308-91995327 | Msa0387890:CDS | 50.0% | |
| TCTGAGGAAAAGAGTGGTGG+TGG | + | chr3_1:91995324-91995343 | Msa0387890:CDS | 50.0% | |
| !! | GGAAAAGAGTGGTGGTGGAT+TGG | + | chr3_1:91995329-91995348 | Msa0387890:CDS | 50.0% |
| AGTTGAATTAGGCACGGGGC+CGG | - | chr3_1:91995051-91995070 | None:intergenic | 55.0% | |
| !! | AGAGTGGTGGTGGATTGGGA+AGG | + | chr3_1:91995334-91995353 | Msa0387890:CDS | 55.0% |
| AGTTGAATTAGGCACGGGGC+CGG | - | chr3_1:91995051-91995070 | None:intergenic | 55.0% | |
| !! | AGAGTGGTGGTGGATTGGGA+AGG | + | chr3_1:91995334-91995353 | Msa0387890:CDS | 55.0% |
| !! | GTGGTGGTGGATTGGGAAGG+AGG | + | chr3_1:91995337-91995356 | Msa0387890:CDS | 60.0% |
| !! | GTGGTGGATTGGGAAGGAGG+TGG | + | chr3_1:91995340-91995359 | Msa0387890:CDS | 60.0% |
| ! | TGGATTGGGAAGGAGGTGGC+TGG | + | chr3_1:91995344-91995363 | Msa0387890:CDS | 60.0% |
| ATTGGGAAGGAGGTGGCTGG+TGG | + | chr3_1:91995347-91995366 | Msa0387890:CDS | 60.0% | |
| !! | GTGGTGGTGGATTGGGAAGG+AGG | + | chr3_1:91995337-91995356 | Msa0387890:CDS | 60.0% |
| !! | GTGGTGGATTGGGAAGGAGG+TGG | + | chr3_1:91995340-91995359 | Msa0387890:CDS | 60.0% |
| ! | TGGATTGGGAAGGAGGTGGC+TGG | + | chr3_1:91995344-91995363 | Msa0387890:CDS | 60.0% |
| ATTGGGAAGGAGGTGGCTGG+TGG | + | chr3_1:91995347-91995366 | Msa0387890:CDS | 60.0% | |
| AAGGAGGTGGCTGGTGGCAG+AGG | + | chr3_1:91995353-91995372 | Msa0387890:CDS | 65.0% | |
| AAGGAGGTGGCTGGTGGCAG+AGG | + | chr3_1:91995353-91995372 | Msa0387890:CDS | 65.0% | |
| GAGGTGGCTGGTGGCAGAGG+TGG | + | chr3_1:91995356-91995375 | Msa0387890:CDS | 70.0% | |
| GAGGTGGCTGGTGGCAGAGG+TGG | + | chr3_1:91995356-91995375 | Msa0387890:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91994326 | 91995585 | 91994326 | ID=Msa0387890;Name=Msa0387890 |
| chr3_1 | mRNA | 91994326 | 91995585 | 91994326 | ID=Msa0387890-mRNA-1;Parent=Msa0387890;Name=Msa0387890-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.33|1|1|1|3|154|184 |
| chr3_1 | exon | 91994326 | 91994647 | 91994326 | ID=Msa0387890-mRNA-1:exon:25799;Parent=Msa0387890-mRNA-1 |
| chr3_1 | exon | 91995111 | 91995206 | 91995111 | ID=Msa0387890-mRNA-1:exon:25800;Parent=Msa0387890-mRNA-1 |
| chr3_1 | exon | 91995295 | 91995585 | 91995295 | ID=Msa0387890-mRNA-1:exon:25801;Parent=Msa0387890-mRNA-1 |
| chr3_1 | CDS | 91994326 | 91994647 | 91994326 | ID=Msa0387890-mRNA-1:cds;Parent=Msa0387890-mRNA-1 |
| chr3_1 | CDS | 91995111 | 91995206 | 91995111 | ID=Msa0387890-mRNA-1:cds;Parent=Msa0387890-mRNA-1 |
| chr3_1 | CDS | 91995295 | 91995431 | 91995295 | ID=Msa0387890-mRNA-1:cds;Parent=Msa0387890-mRNA-1 |
| chr3_1 | three_prime_UTR | 91995432 | 91995585 | 91995432 | ID=Msa0387890-mRNA-1:three_prime_utr;Parent=Msa0387890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
