AlfalfaGEDB | Msa0387890

M. sativa cultivar zhongmu-4 / Msa0387890

KEGG: -
GO: -
PFAM: PF14368.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387890	GAU46608.1	83.607	183	30	0	2	184	1	183	1.15e-100	298

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387890	sp\|F4I082\|LTPG6_ARATH	43.258	178	93	4	8	181	10	183	3.57e-43	145

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387890	A0A2Z6NQM3	83.607	183	30	0	2	184	1	183	5.48e-101	298

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa0387890	0.829242	5.743721e-55	-8.615850e-47
Msa0029730	Msa0387890	0.815853	7.472589e-52	-8.615850e-47
Msa0032390	Msa0387890	0.801583	8.409961e-49	-8.615850e-47
Msa0045620	Msa0387890	0.814349	1.612161e-51	-8.615850e-47
Msa0050530	Msa0387890	0.857252	1.852582e-62	-8.615850e-47
Msa0100600	Msa0387890	0.806126	9.567707e-50	-8.615850e-47
Msa0100890	Msa0387890	0.846784	1.747815e-59	-8.615850e-47
Msa0169710	Msa0387890	0.806819	6.835239e-50	-8.615850e-47
Msa0185690	Msa0387890	0.800637	1.312586e-48	-8.615850e-47
Msa0197920	Msa0387890	0.811164	8.029861e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387890	MtrunA17_Chr3g0121381	90.270	185	16	1	1	183	1	185	9.99e-98	280
Msa0387890	MtrunA17_Chr8g0378461	50.829	181	83	3	9	183	14	194	4.29e-66	201
Msa0387890	MtrunA17_Chr8g0356191	39.487	195	105	6	1	182	1	195	8.21e-37	126
Msa0387890	MtrunA17_Chr7g0219391	48.000	100	52	0	8	107	12	111	8.80e-30	106
Msa0387890	MtrunA17_Chr1g0205181	33.083	133	81	2	12	144	15	139	1.42e-13	65.1
Msa0387890	MtrunA17_Chr1g0205201	36.667	90	55	2	12	101	10	97	1.82e-12	62.0
Msa0387890	MtrunA17_Chr1g0205191	39.189	74	42	2	28	101	25	95	8.24e-12	59.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387890	AT1G55260.1	43.258	178	93	4	8	181	53	226	7.16e-44	145
Msa0387890	AT1G55260.2	43.258	178	90	5	8	181	53	223	2.29e-43	144
Msa0387890	AT2G44300.1	39.796	196	96	5	7	183	11	203	1.43e-40	136
Msa0387890	AT2G44290.1	38.579	197	96	4	9	183	11	204	1.65e-40	136
Msa0387890	AT3G58550.1	38.926	149	84	4	4	145	9	157	6.72e-30	108
Msa0387890	AT1G03103.1	31.915	94	64	0	8	101	2	95	1.96e-14	68.2
Msa0387890	AT5G09370.2	37.736	106	61	2	24	127	21	123	3.23e-14	66.6
Msa0387890	AT5G09370.3	37.600	125	64	5	24	138	21	141	3.83e-14	67.0
Msa0387890	AT2G48130.2	36.559	93	57	2	10	101	8	99	4.30e-14	67.4
Msa0387890	AT2G48130.6	36.559	93	57	2	10	101	8	99	4.30e-14	67.4

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Find 54 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAGGTGGCTGGTGGCAG+AGG	0.280788	3_1:+91995353	Msa0387890:CDS
AAGTACAACAATCTATAGTG+GGG	0.642782	3_1:-91994478	None:intergenic
AAGTGAGATATGAAAAGAAA+TGG	0.450601	3_1:-91995393	None:intergenic
AATAATTACCGCTGGAAATA+GGG	0.274317	3_1:-91995193	None:intergenic
ACACATTCAGTTATATTAGA+TGG	0.359046	3_1:-91994629	None:intergenic
ACCTAAATCCCCTGAAGCTA+AGG	0.474094	3_1:+91995127	Msa0387890:CDS
ACCTTAGCTTCAGGGGATTT+AGG	0.238114	3_1:-91995128	None:intergenic
AGAAGACTCATTACTTGAAT+TGG	0.276229	3_1:+91995463	Msa0387890:three_prime_UTR
AGAGTGGTGGTGGATTGGGA+AGG	0.615185	3_1:+91995334	Msa0387890:CDS
AGGGGAGGAACTGTTTGTTT+TGG	0.377595	3_1:-91995174	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTACAACAATCTATAGTG+GGG	-	chr3_1:91994481-91994500	None:intergenic	30.0%
GAAGTACAACAATCTATAGT+GGG	-	chr3_1:91994482-91994501	None:intergenic	30.0%
TTCAACTTGATACCAAGTTT+GGG	-	chr3_1:91994569-91994588	None:intergenic	30.0%
ATTCAACTTGATACCAAGTT+TGG	-	chr3_1:91994570-91994589	None:intergenic	30.0%
CATATGTATATAGTCCAATC+AGG	-	chr3_1:91994720-91994739	None:intergenic	30.0%
AATAATTACCGCTGGAAATA+GGG	-	chr3_1:91995196-91995215	None:intergenic	30.0%
TAATAATTACCGCTGGAAAT+AGG	-	chr3_1:91995197-91995216	None:intergenic	30.0%
TGTGCCTCTAATAATGTTTA+AGG	+	chr3_1:91995273-91995292	Msa0387890:intron	30.0%
AGAAGACTCATTACTTGAAT+TGG	+	chr3_1:91995463-91995482	Msa0387890:three_prime_UTR	30.0%
GCTCAGAAAAATATAGGAAT+TGG	-	chr3_1:91995558-91995577	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	91994326	91995585	91994326	ID=Msa0387890;Name=Msa0387890
chr3_1	mRNA	91994326	91995585	91994326	ID=Msa0387890-mRNA-1;Parent=Msa0387890;Name=Msa0387890-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|154\|184
chr3_1	exon	91994326	91994647	91994326	ID=Msa0387890-mRNA-1:exon:25799;Parent=Msa0387890-mRNA-1
chr3_1	exon	91995111	91995206	91995111	ID=Msa0387890-mRNA-1:exon:25800;Parent=Msa0387890-mRNA-1
chr3_1	exon	91995295	91995585	91995295	ID=Msa0387890-mRNA-1:exon:25801;Parent=Msa0387890-mRNA-1
chr3_1	CDS	91994326	91994647	91994326	ID=Msa0387890-mRNA-1:cds;Parent=Msa0387890-mRNA-1
chr3_1	CDS	91995111	91995206	91995111	ID=Msa0387890-mRNA-1:cds;Parent=Msa0387890-mRNA-1
chr3_1	CDS	91995295	91995431	91995295	ID=Msa0387890-mRNA-1:cds;Parent=Msa0387890-mRNA-1
chr3_1	three_prime_UTR	91995432	91995585	91995432	ID=Msa0387890-mRNA-1:three_prime_utr;Parent=Msa0387890-mRNA-1

Gene Sequence

>Msa0387890

ATGATGGTTTCCAACAAAAGTGTAACTGCATTATTATTTCTACTGTTGGCTGGTTTTGTGAGCTCAGATTTTACAAAAGACAGAAACGATTGTGCTGATAAACTTGTTACTCTTGCTGGTTGTCTTCCATACGTTGGTGGTAGTGCCAATACCCCCACTATAGATTGTTGTACTTCCCTTAAACAAGTCCTTGATAAGACCAAAAAATGCATCTGTATCCTCATCAAAGATCGCAATGACCCCAAACTTGGTATCAAGTTGAATGCCACTCTTGCTGTACAGCTTCCAAACGCTTGTCACATACCATCTAATATAACTGAATATCTTCTACATTTGTCACCTAAATCCCCTGAAGCTAAGGTGTTTGAAGGACTTGGAAATTCTACCAAAACAAACAGTTCCTCCCCTATTTCCAGCGGTTCTGCTGAGAGGGGATCAAGCTCAAGTTCTGAGGAAAAGAGTGGTGGTGGATTGGGAAGGAGGTGGCTGGTGGCAGAGGTGGTTTGTGCTATTTTACCATTTCTTTTCATATCTCACTTCTTCATCCTAGCTTGA

Protein sequence

>Msa0387890

MMVSNKSVTALLFLLLAGFVSSDFTKDRNDCADKLVTLAGCLPYVGGSANTPTIDCCTSLKQVLDKTKKCICILIKDRNDPKLGIKLNATLAVQLPNACHIPSNITEYLLHLSPKSPEAKVFEGLGNSTKTNSSSPISSGSAERGSSSSSEEKSGGGLGRRWLVAEVVCAILPFLFISHFFILA*