Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110110 | XP_039683468.1 | 97.739 | 398 | 9 | 0 | 1 | 398 | 1 | 398 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110110 | sp|Q66I84|DCC1_DANRE | 32.240 | 366 | 228 | 8 | 26 | 385 | 24 | 375 | 3.27e-39 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110110 | A0A072TGP8 | 97.739 | 398 | 9 | 0 | 1 | 398 | 1 | 398 | 0.0 | 800 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1110110 | 0.813423 | 2.579019e-51 | -8.615850e-47 |
| Msa0054480 | Msa1110110 | 0.825788 | 3.872874e-54 | -8.615850e-47 |
| Msa0070700 | Msa1110110 | 0.800136 | 1.660702e-48 | -8.615850e-47 |
| Msa0079380 | Msa1110110 | 0.807705 | 4.435099e-50 | -8.615850e-47 |
| Msa0625720 | Msa1110110 | 0.814192 | 1.746093e-51 | -8.615850e-47 |
| Msa0661650 | Msa1110110 | 0.805602 | 1.233197e-49 | -8.615850e-47 |
| Msa0663390 | Msa1110110 | 0.824496 | 7.821009e-54 | -8.615850e-47 |
| Msa0690860 | Msa1110110 | 0.802114 | 6.542154e-49 | -8.615850e-47 |
| Msa0793800 | Msa1110110 | 0.814644 | 1.386845e-51 | -8.615850e-47 |
| Msa0808080 | Msa1110110 | 0.804579 | 2.018537e-49 | -8.615850e-47 |
| Msa0831530 | Msa1110110 | 0.800089 | 1.697583e-48 | -8.615850e-47 |
| Msa0168500 | Msa1110110 | 0.805550 | 1.264338e-49 | -8.615850e-47 |
| Msa0187120 | Msa1110110 | 0.815225 | 1.031043e-51 | -8.615850e-47 |
| Msa0386090 | Msa1110110 | 0.800270 | 1.558955e-48 | -8.615850e-47 |
| Msa0395820 | Msa1110110 | 0.806918 | 6.514540e-50 | -8.615850e-47 |
| Msa0411430 | Msa1110110 | 0.802919 | 4.462970e-49 | -8.615850e-47 |
| Msa0481530 | Msa1110110 | 0.809740 | 1.629806e-50 | -8.615850e-47 |
| Msa1019000 | Msa1110110 | 0.807932 | 3.968789e-50 | -8.615850e-47 |
| Msa1036610 | Msa1110110 | 0.813829 | 2.099800e-51 | -8.615850e-47 |
| Msa1048160 | Msa1110110 | 0.803136 | 4.025026e-49 | -8.615850e-47 |
| Msa1056250 | Msa1110110 | 0.911239 | 7.619098e-83 | -8.615850e-47 |
| Msa1075650 | Msa1110110 | 0.815273 | 1.006179e-51 | -8.615850e-47 |
| Msa1081330 | Msa1110110 | 0.805773 | 1.135323e-49 | -8.615850e-47 |
| Msa1100050 | Msa1110110 | 0.833519 | 5.090676e-56 | -8.615850e-47 |
| Msa0257460 | Msa1110110 | 0.805972 | 1.030910e-49 | -8.615850e-47 |
| Msa0267370 | Msa1110110 | 0.823636 | 1.244991e-53 | -8.615850e-47 |
| Msa0271530 | Msa1110110 | 0.807857 | 4.118856e-50 | -8.615850e-47 |
| Msa0288080 | Msa1110110 | 0.802972 | 4.352666e-49 | -8.615850e-47 |
| Msa0359030 | Msa1110110 | 0.809121 | 2.212726e-50 | -8.615850e-47 |
| Msa1109680 | Msa1110110 | 0.816930 | 4.289969e-52 | -8.615850e-47 |
| Msa1110110 | Msa1123380 | 0.804681 | 1.921874e-49 | -8.615850e-47 |
| Msa1110110 | Msa1135470 | 0.832600 | 8.617112e-56 | -8.615850e-47 |
| Msa1110110 | Msa1155170 | -0.800900 | 1.159937e-48 | -8.615850e-47 |
| Msa1110110 | Msa1162780 | 0.826389 | 2.787404e-54 | -8.615850e-47 |
| Msa1110110 | Msa1167340 | 0.807286 | 5.443045e-50 | -8.615850e-47 |
| Msa1110110 | Msa1181910 | 0.821996 | 3.000379e-53 | -8.615850e-47 |
| Msa1110110 | Msa1208880 | 0.810404 | 1.172573e-50 | -8.615850e-47 |
| Msa1110110 | Msa1245930 | 0.816749 | 4.711112e-52 | -8.615850e-47 |
| Msa1110110 | Msa1259060 | 0.810362 | 1.197064e-50 | -8.615850e-47 |
| Msa1110110 | Msa1330410 | 0.803239 | 3.833585e-49 | -8.615850e-47 |
| Msa1110110 | Msa1392780 | 0.811445 | 6.974708e-51 | -8.615850e-47 |
| Msa1110110 | Msa1400580 | 0.800745 | 1.247558e-48 | -8.615850e-47 |
| Msa1110110 | Msa1440310 | 0.801284 | 9.683186e-49 | -8.615850e-47 |
| Msa1110110 | Msa1451160 | 0.803524 | 3.345180e-49 | -8.615850e-47 |
| Msa1110110 | Msa1466540 | 0.809907 | 1.499977e-50 | -8.615850e-47 |
| Msa0504210 | Msa1110110 | 0.817609 | 3.018253e-52 | -8.615850e-47 |
| Msa0521670 | Msa1110110 | 0.807523 | 4.848732e-50 | -8.615850e-47 |
| Msa0529890 | Msa1110110 | 0.819333 | 1.227165e-52 | -8.615850e-47 |
| Msa0530400 | Msa1110110 | 0.802943 | 4.413655e-49 | -8.615850e-47 |
| Msa0532990 | Msa1110110 | 0.808557 | 2.920950e-50 | -8.615850e-47 |
| Msa0569200 | Msa1110110 | 0.828134 | 1.064179e-54 | -8.615850e-47 |
| Msa0585560 | Msa1110110 | 0.820150 | 7.985893e-53 | -8.615850e-47 |
| Msa0844570 | Msa1110110 | 0.800771 | 1.232876e-48 | -8.615850e-47 |
| Msa0876810 | Msa1110110 | 0.803472 | 3.429371e-49 | -8.615850e-47 |
| Msa0941190 | Msa1110110 | 0.804738 | 1.870075e-49 | -8.615850e-47 |
| Msa0974070 | Msa1110110 | 0.804539 | 2.058368e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110110 | MtrunA17_Chr7g0227931 | 97.739 | 398 | 9 | 0 | 1 | 398 | 1 | 398 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110110 | AT2G44580.2 | 55.696 | 395 | 156 | 4 | 10 | 398 | 5 | 386 | 3.02e-158 | 451 |
| Msa1110110 | AT2G44580.1 | 55.696 | 395 | 156 | 4 | 10 | 398 | 5 | 386 | 3.02e-158 | 451 |
Find 108 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTGTCACGGTGGTTTC+TGG | 0.127409 | 7_3:-54716129 | None:intergenic |
| ACTTTCTCTTACCTCCTTTC+AGG | 0.140263 | 7_3:-54719787 | None:intergenic |
| GCTAAGCTTGACTTAAATTT+TGG | 0.146507 | 7_3:-54720392 | None:intergenic |
| AGTTCGGCTGTGTGTGTTTC+CGG | 0.163504 | 7_3:-54716082 | None:intergenic |
| GTTGCATATCACCCTGATTT+TGG | 0.178187 | 7_3:+54717026 | Msa1110110:CDS |
| TACTATCTTGCACTGAAAAT+TGG | 0.229137 | 7_3:-54720202 | None:intergenic |
| CCTGAAGTCTGCTGTGGTTC+TGG | 0.271122 | 7_3:-54716957 | None:intergenic |
| TACATCCTTCACAGTCCTTA+TGG | 0.277780 | 7_3:+54720255 | Msa1110110:three_prime_UTR |
| CAATTTAAGTTTATCAAGTC+TGG | 0.284052 | 7_3:-54719330 | None:intergenic |
| TACCTTTCATTCAAAACATC+TGG | 0.299684 | 7_3:-54717095 | None:intergenic |
| TACGATTCTGATTGATTTGC+TGG | 0.300346 | 7_3:-54719206 | None:intergenic |
| TGAAAACAGGGGAAATAAAA+AGG | 0.316519 | 7_3:-54720339 | None:intergenic |
| GGAGTTAAGGGTTGGATTGC+AGG | 0.317393 | 7_3:+54719478 | Msa1110110:CDS |
| CTAGATCAGGATTATATAAC+TGG | 0.322642 | 7_3:+54719420 | Msa1110110:CDS |
| ATAATATCTGAACCTGATAT+AGG | 0.331471 | 7_3:-54720020 | None:intergenic |
| GAGTTACATGGACATGATTC+TGG | 0.333299 | 7_3:+54719547 | Msa1110110:CDS |
| GTTCGGCTGTGTGTGTTTCC+GGG | 0.337965 | 7_3:-54716081 | None:intergenic |
| TCATCATGAGGTCCAAAATC+AGG | 0.344472 | 7_3:-54717038 | None:intergenic |
| TTTCAGTGCAAGATAGTATC+TGG | 0.354261 | 7_3:+54720207 | Msa1110110:exon |
| AAAAGTTGTACCTGGTAGTA+TGG | 0.354433 | 7_3:+54719289 | Msa1110110:CDS |
| CTTCCAACGACGGTCAAGTT+CGG | 0.362960 | 7_3:-54716098 | None:intergenic |
| ACATATGCTATGAAGTTTGT+TGG | 0.371449 | 7_3:+54719155 | Msa1110110:CDS |
| TTACATATCTAAATGAAAAC+AGG | 0.374312 | 7_3:-54720352 | None:intergenic |
| AGCTAGTGACGAGGAGTTAA+GGG | 0.384193 | 7_3:+54719466 | Msa1110110:CDS |
| GAGGTATTGACAGAGAAAAT+TGG | 0.391418 | 7_3:+54719884 | Msa1110110:CDS |
| CCAGAACCACAGCAGACTTC+AGG | 0.399798 | 7_3:+54716957 | Msa1110110:CDS |
| AAGATCTACAGCCCTATATC+AGG | 0.405081 | 7_3:+54720008 | Msa1110110:CDS |
| AAGCTAGTGACGAGGAGTTA+AGG | 0.405465 | 7_3:+54719465 | Msa1110110:CDS |
| TATTTCAGGATGGTCTTAAG+AGG | 0.410120 | 7_3:+54719092 | Msa1110110:intron |
| TTTCAGAGAGCGTGCGAAAT+GGG | 0.422061 | 7_3:+54719979 | Msa1110110:CDS |
| TGTTTAGTGAAAGGGTGAAA+TGG | 0.428421 | 7_3:+54716932 | Msa1110110:intron |
| CTGTGGAGATCAATGGATAT+TGG | 0.428629 | 7_3:+54719510 | Msa1110110:CDS |
| TAATATCTGAACCTGATATA+GGG | 0.441929 | 7_3:-54720019 | None:intergenic |
| TGGTACAAGCAAAACAGAAT+TGG | 0.457146 | 7_3:-54719183 | None:intergenic |
| AAAGTGGGATGCATTTCATC+TGG | 0.459477 | 7_3:-54719845 | None:intergenic |
| CGCACGCTCTCTGAAAAGAA+TGG | 0.463696 | 7_3:-54719972 | None:intergenic |
| CAAAGAACTGCATCTTCGTC+AGG | 0.467011 | 7_3:-54719119 | None:intergenic |
| ATAAGCGAGTACTGTGCTTA+CGG | 0.468868 | 7_3:-54720301 | None:intergenic |
| CTTTCAGCTGTGGAGATCAA+TGG | 0.471420 | 7_3:+54719503 | Msa1110110:CDS |
| CAATGCCTTGCAAGTACCTT+CGG | 0.476106 | 7_3:-54719662 | None:intergenic |
| CCGGGCAGTTGAGATCAGTT+CGG | 0.477733 | 7_3:-54716063 | None:intergenic |
| TGGTAGTATGGAGCTTATTG+AGG | 0.485548 | 7_3:+54719301 | Msa1110110:CDS |
| GTATTTCTTATTTGAAATTG+TGG | 0.487512 | 7_3:+54720445 | Msa1110110:three_prime_UTR |
| AGAATGGAGAAGCGTTCAGC+TGG | 0.490161 | 7_3:-54719956 | None:intergenic |
| AATTTAAGTTTATCAAGTCT+GGG | 0.490225 | 7_3:-54719329 | None:intergenic |
| ATGCTTTATGTTTAGTGAAA+GGG | 0.490804 | 7_3:+54716924 | Msa1110110:intron |
| AAAATTCAGTGTTGAATGAC+TGG | 0.512521 | 7_3:+54719582 | Msa1110110:CDS |
| AGAAAATTGGAGTTGAGACA+TGG | 0.514429 | 7_3:+54719897 | Msa1110110:CDS |
| GAGAATCACGAATCTAGATC+AGG | 0.514548 | 7_3:+54719407 | Msa1110110:CDS |
| ACCTTCCATAAGATCAAAAG+TGG | 0.518379 | 7_3:-54719861 | None:intergenic |
| ATTGCAGGCTCTTTCAGCTG+TGG | 0.518858 | 7_3:+54719493 | Msa1110110:CDS |
| AAGTGACGAGGAAGGCCATA+AGG | 0.523283 | 7_3:-54720270 | None:intergenic |
| GCAAAGTGGTGTGTGGAAGT+TGG | 0.529433 | 7_3:+54719727 | Msa1110110:CDS |
| GTACCAGGTCTTTCTGCAGA+AGG | 0.532732 | 7_3:+54720130 | Msa1110110:CDS |
| GTGGAAGTTGGATGAGAAGC+GGG | 0.536854 | 7_3:+54719739 | Msa1110110:CDS |
| AAGCGTTCAGCTGGAGTGGA+AGG | 0.542810 | 7_3:-54719947 | None:intergenic |
| GGAGAAGCGTTCAGCTGGAG+TGG | 0.543503 | 7_3:-54719951 | None:intergenic |
| ACCTTTCATTCAAAACATCT+GGG | 0.545854 | 7_3:-54717094 | None:intergenic |
| TGATCTCATAATTCTAGAGC+TGG | 0.546425 | 7_3:+54717058 | Msa1110110:CDS |
| GCAACAGAAATCGATGATCC+AGG | 0.552834 | 7_3:-54717008 | None:intergenic |
| AGATGAAGTTGTGAATATGC+TGG | 0.555808 | 7_3:+54719625 | Msa1110110:CDS |
| CAGCCGAACTTGACCGTCGT+TGG | 0.557162 | 7_3:+54716095 | Msa1110110:five_prime_UTR |
| AGTGACGAGGAGTTAAGGGT+TGG | 0.559394 | 7_3:+54719470 | Msa1110110:CDS |
| GAGAGCGTGCGAAATGGGAA+TGG | 0.559837 | 7_3:+54719984 | Msa1110110:CDS |
| CAGATTTGATGAGAATGACA+TGG | 0.560594 | 7_3:+54719373 | Msa1110110:CDS |
| CCGAACTGATCTCAACTGCC+CGG | 0.561672 | 7_3:+54716063 | Msa1110110:five_prime_UTR |
| CATCATGAGGTCCAAAATCA+GGG | 0.563023 | 7_3:-54717037 | None:intergenic |
| ATTAGTTGATGAGAGTTACA+TGG | 0.564361 | 7_3:+54719535 | Msa1110110:CDS |
| TTCAGGGATCTGGATGTACC+AGG | 0.570204 | 7_3:+54720115 | Msa1110110:intron |
| AACCTGGAGTTTGTCTGTCA+CGG | 0.588474 | 7_3:-54716139 | None:intergenic |
| AAATGATCATTCTAGAGTGA+TGG | 0.588477 | 7_3:+54720417 | Msa1110110:three_prime_UTR |
| ATTTAAGTTTATCAAGTCTG+GGG | 0.591494 | 7_3:-54719328 | None:intergenic |
| GATTTCCGAAGGTACTTGCA+AGG | 0.595602 | 7_3:+54719657 | Msa1110110:CDS |
| TTTAAGTTTATCAAGTCTGG+GGG | 0.597237 | 7_3:-54719327 | None:intergenic |
| GGCGGCGTTTCTTCCAACGA+CGG | 0.600195 | 7_3:-54716108 | None:intergenic |
| CACCGTGACAGACAAACTCC+AGG | 0.600221 | 7_3:+54716137 | Msa1110110:five_prime_UTR |
| TCTGTCACGGTGGTTTCTGG+CGG | 0.602374 | 7_3:-54716126 | None:intergenic |
| GTGAATATGCTGGAATCAGA+TGG | 0.612073 | 7_3:+54719635 | Msa1110110:CDS |
| ACACTTAGACATATGTCACC+TGG | 0.612546 | 7_3:+54716990 | Msa1110110:CDS |
| TACATATCTAAATGAAAACA+GGG | 0.613646 | 7_3:-54720351 | None:intergenic |
| AAACCTTCTGCAGAAAGACC+TGG | 0.615596 | 7_3:-54720133 | None:intergenic |
| TCTATTTAAAGTGACGAGGA+AGG | 0.623676 | 7_3:-54720278 | None:intergenic |
| GCTCCTCCTGAAGTCTGCTG+TGG | 0.628242 | 7_3:-54716963 | None:intergenic |
| GAAGGCCATAAGGACTGTGA+AGG | 0.628804 | 7_3:-54720260 | None:intergenic |
| GAAAATTGGAGTTGAGACAT+GGG | 0.629514 | 7_3:+54719898 | Msa1110110:CDS |
| CTGGAGTTTGTCTGTCACGG+TGG | 0.632097 | 7_3:-54716136 | None:intergenic |
| GGAATCAGATGGATTTCCGA+AGG | 0.635324 | 7_3:+54719646 | Msa1110110:CDS |
| TCAATAAGCTCCATACTACC+AGG | 0.636229 | 7_3:-54719299 | None:intergenic |
| TATGCTAGAGAAATCCTGAA+AGG | 0.639851 | 7_3:+54719773 | Msa1110110:CDS |
| AGTGTACTAAAAGTTGTACC+TGG | 0.641842 | 7_3:+54719281 | Msa1110110:CDS |
| GCTAGAGAAATCCTGAAAGG+AGG | 0.643390 | 7_3:+54719776 | Msa1110110:CDS |
| TGTGGAAGTTGGATGAGAAG+CGG | 0.646023 | 7_3:+54719738 | Msa1110110:CDS |
| GAACCACAGCAGACTTCAGG+AGG | 0.646781 | 7_3:+54716960 | Msa1110110:CDS |
| ATTGGATCATCATTAGCCGA+CGG | 0.649023 | 7_3:-54720184 | None:intergenic |
| GATTCTGATTGATTTGCTGG+TGG | 0.656551 | 7_3:-54719203 | None:intergenic |
| ACAGCAGACTTCAGGAGGAG+CGG | 0.657032 | 7_3:+54716965 | Msa1110110:CDS |
| AATTTCAAATAAGAAATACA+AGG | 0.658687 | 7_3:-54720441 | None:intergenic |
| ATTGCATGCAAAGTGGTGTG+TGG | 0.666073 | 7_3:+54719720 | Msa1110110:CDS |
| CCTTCCATAAGATCAAAAGT+GGG | 0.666519 | 7_3:-54719860 | None:intergenic |
| TGGAAGGCAATGAAGAGACA+CGG | 0.669323 | 7_3:-54719931 | None:intergenic |
| GAAAATGATTGCATGCAAAG+TGG | 0.671448 | 7_3:+54719713 | Msa1110110:CDS |
| ACGGTCTATTTAAAGTGACG+AGG | 0.674056 | 7_3:-54720282 | None:intergenic |
| AGGCAATGAAGAGACACGGA+AGG | 0.679043 | 7_3:-54719927 | None:intergenic |
| TTGCTTGCATGTGTATGCCA+AGG | 0.692578 | 7_3:+54719682 | Msa1110110:CDS |
| CACTCGAAAGACACAACCGT+CGG | 0.705980 | 7_3:+54720168 | Msa1110110:CDS |
| AGAATTATGAGATCATCATG+AGG | 0.708784 | 7_3:-54717050 | None:intergenic |
| ACATATCTAAATGAAAACAG+GGG | 0.711112 | 7_3:-54720350 | None:intergenic |
| AAATATTCAAGCTAGTGACG+AGG | 0.720450 | 7_3:+54719457 | Msa1110110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATGACCATAATATT+AGG | + | chr7_3:54718945-54718964 | Msa1110110:intron | 15.0% |
| !! | AATTTCAAATAAGAAATACA+AGG | - | chr7_3:54720444-54720463 | None:intergenic | 15.0% |
| !!! | TGTTTGTTTTTGATAAACAA+GGG | - | chr7_3:54716035-54716054 | None:intergenic | 20.0% |
| !!! | TTGTTTGTTTTTGATAAACA+AGG | - | chr7_3:54716036-54716055 | None:intergenic | 20.0% |
| !!! | GTTTATTTTATCTTTTGCTA+TGG | + | chr7_3:54716414-54716433 | Msa1110110:intron | 20.0% |
| !! | CAGTAAATAAGTTCAAATAA+GGG | - | chr7_3:54716511-54716530 | None:intergenic | 20.0% |
| !! | TCAGTAAATAAGTTCAAATA+AGG | - | chr7_3:54716512-54716531 | None:intergenic | 20.0% |
| !!! | ATGCAAACTTTTTTTTTCAA+TGG | + | chr7_3:54716757-54716776 | Msa1110110:intron | 20.0% |
| !! | TCGAAAAAACAATATAAAGA+TGG | - | chr7_3:54717284-54717303 | None:intergenic | 20.0% |
| !!! | ATGAGTTTTTGACTTATTTA+AGG | + | chr7_3:54717327-54717346 | Msa1110110:intron | 20.0% |
| !! | AAAATCCATCTCAATTTATT+TGG | + | chr7_3:54717461-54717480 | Msa1110110:intron | 20.0% |
| !!! | TTTGGGTACTATAATTTTAT+TGG | - | chr7_3:54717627-54717646 | None:intergenic | 20.0% |
| !! | AAAATTATAGTACCCAAAAA+TGG | + | chr7_3:54717629-54717648 | Msa1110110:intron | 20.0% |
| !! | ATTAGACATATCAAAAGAAA+CGG | - | chr7_3:54717989-54718008 | None:intergenic | 20.0% |
| !! | AATAGCATTATGATTTCTTA+TGG | - | chr7_3:54718021-54718040 | None:intergenic | 20.0% |
| !! | TAACTGAAATCCTAATATTA+TGG | - | chr7_3:54718958-54718977 | None:intergenic | 20.0% |
| !! | TCTAAGTAACTATTGTAATT+AGG | - | chr7_3:54718982-54719001 | None:intergenic | 20.0% |
| !!! | AATTTAAGTTTATCAAGTCT+GGG | - | chr7_3:54719332-54719351 | None:intergenic | 20.0% |
| !!! | TTTCTAATTTTGAATGTTTC+AGG | + | chr7_3:54720098-54720117 | Msa1110110:intron | 20.0% |
| !!! | TTCTAATTTTGAATGTTTCA+GGG | + | chr7_3:54720099-54720118 | Msa1110110:intron | 20.0% |
| !! | TACATATCTAAATGAAAACA+GGG | - | chr7_3:54720354-54720373 | None:intergenic | 20.0% |
| !! | TTACATATCTAAATGAAAAC+AGG | - | chr7_3:54720355-54720374 | None:intergenic | 20.0% |
| ! | ATTCTATACATAGAGGATAA+AGG | - | chr7_3:54716187-54716206 | None:intergenic | 25.0% |
| ! | ATAAATTTGTGAGACTGTTT+GGG | + | chr7_3:54716533-54716552 | Msa1110110:intron | 25.0% |
| ! | ATTAAGAAGATTATCCAAAC+AGG | + | chr7_3:54716717-54716736 | Msa1110110:intron | 25.0% |
| ! | CAAAGGAGAAAAACATAATA+CGG | - | chr7_3:54716801-54716820 | None:intergenic | 25.0% |
| ! | AATGCTTTATGTTTAGTGAA+AGG | + | chr7_3:54716923-54716942 | Msa1110110:intron | 25.0% |
| ! | ATGCTTTATGTTTAGTGAAA+GGG | + | chr7_3:54716924-54716943 | Msa1110110:intron | 25.0% |
| ! | ATTTGTAACTCCTTGAAAAA+AGG | + | chr7_3:54717139-54717158 | Msa1110110:intron | 25.0% |
| ! | CTTGAAAAAAGGAATGAAAT+GGG | + | chr7_3:54717150-54717169 | Msa1110110:intron | 25.0% |
| ! | TTGCTTTAATTACCGTAATT+AGG | + | chr7_3:54717239-54717258 | Msa1110110:intron | 25.0% |
| !!! | ATTTGATTTTATGAAGCTAG+TGG | + | chr7_3:54717392-54717411 | Msa1110110:intron | 25.0% |
| ! | AACAACCAAATAAATTGAGA+TGG | - | chr7_3:54717469-54717488 | None:intergenic | 25.0% |
| !!! | GCTTTTTGGATATTTTAAAG+TGG | - | chr7_3:54717685-54717704 | None:intergenic | 25.0% |
| !! | GAGACATTTTTATATCGAAA+AGG | - | chr7_3:54717898-54717917 | None:intergenic | 25.0% |
| ! | AGAAATCATAATGCTATTCT+TGG | + | chr7_3:54718023-54718042 | Msa1110110:intron | 25.0% |
| !!! | CATATTTTAACAGAAGATCT+TGG | - | chr7_3:54718086-54718105 | None:intergenic | 25.0% |
| ! | TAATGTCATTCAATTGCATA+TGG | - | chr7_3:54718189-54718208 | None:intergenic | 25.0% |
| !! | AGTATTGTGATTCAGTATTT+TGG | - | chr7_3:54718246-54718265 | None:intergenic | 25.0% |
| !! | AACTTTTCAATATAACCTAG+GGG | - | chr7_3:54718348-54718367 | None:intergenic | 25.0% |
| !! | CAACTTTTCAATATAACCTA+GGG | - | chr7_3:54718349-54718368 | None:intergenic | 25.0% |
| ! | ACATGAAAATGTGTAGAAAA+GGG | - | chr7_3:54718384-54718403 | None:intergenic | 25.0% |
| !!! | CGTAATTTTAATTTGACTCT+TGG | + | chr7_3:54718573-54718592 | Msa1110110:intron | 25.0% |
| ! | GAACACATAAATAGTAAGAA+AGG | - | chr7_3:54718842-54718861 | None:intergenic | 25.0% |
| !! | ATTTAAGTTTATCAAGTCTG+GGG | - | chr7_3:54719331-54719350 | None:intergenic | 25.0% |
| !! | CAATTTAAGTTTATCAAGTC+TGG | - | chr7_3:54719333-54719352 | None:intergenic | 25.0% |
| !! | ATCATTTTCTTTTACTTCCT+TGG | - | chr7_3:54719702-54719721 | None:intergenic | 25.0% |
| !! | GAGAAAGTTAGAGAATTTTA+TGG | + | chr7_3:54719802-54719821 | Msa1110110:CDS | 25.0% |
| !! | TAGAGAATTTTATGGAAGAA+TGG | + | chr7_3:54719810-54719829 | Msa1110110:CDS | 25.0% |
| ! | TAATATCTGAACCTGATATA+GGG | - | chr7_3:54720022-54720041 | None:intergenic | 25.0% |
| ! | ATAATATCTGAACCTGATAT+AGG | - | chr7_3:54720023-54720042 | None:intergenic | 25.0% |
| ! | GTACTCGCTTATAAAAATTT+AGG | + | chr7_3:54720312-54720331 | Msa1110110:three_prime_UTR | 25.0% |
| ! | ACATATCTAAATGAAAACAG+GGG | - | chr7_3:54720353-54720372 | None:intergenic | 25.0% |
| GATTAGAAAAAGAGAAAACC+TGG | - | chr7_3:54716158-54716177 | None:intergenic | 30.0% | |
| TATACATAGAGGATAAAGGA+AGG | - | chr7_3:54716183-54716202 | None:intergenic | 30.0% | |
| CATAAATTTGTGAGACTGTT+TGG | + | chr7_3:54716532-54716551 | Msa1110110:intron | 30.0% | |
| ! | TTATGTTTTTCTCCTTTGTC+CGG | + | chr7_3:54716803-54716822 | Msa1110110:intron | 30.0% |
| AAAAGAAAAGGATAAGGAGT+TGG | - | chr7_3:54716846-54716865 | None:intergenic | 30.0% | |
| AGAATTATGAGATCATCATG+AGG | - | chr7_3:54717053-54717072 | None:intergenic | 30.0% | |
| ACCTTTCATTCAAAACATCT+GGG | - | chr7_3:54717097-54717116 | None:intergenic | 30.0% | |
| TACCTTTCATTCAAAACATC+TGG | - | chr7_3:54717098-54717117 | None:intergenic | 30.0% | |
| !!! | CCATTTCATTCCTTTTTTCA+AGG | - | chr7_3:54717152-54717171 | None:intergenic | 30.0% |
| CCTTGAAAAAAGGAATGAAA+TGG | + | chr7_3:54717149-54717168 | Msa1110110:intron | 30.0% | |
| CTTTAATTACCGTAATTAGG+TGG | + | chr7_3:54717242-54717261 | Msa1110110:intron | 30.0% | |
| CTTATTTAAGGAGCTTTCAA+TGG | + | chr7_3:54717339-54717358 | Msa1110110:intron | 30.0% | |
| ! | ATGGATTTTCATTTCATCAG+AGG | - | chr7_3:54717450-54717469 | None:intergenic | 30.0% |
| TGAATTAAACCATTGAGGTT+TGG | - | chr7_3:54717504-54717523 | None:intergenic | 30.0% | |
| ATTGCTGAATTAAACCATTG+AGG | - | chr7_3:54717509-54717528 | None:intergenic | 30.0% | |
| ! | AATAGTCATACACAGCTTTT+TGG | - | chr7_3:54717699-54717718 | None:intergenic | 30.0% |
| ! | ATACACCAAAACCTTTTCAT+AGG | + | chr7_3:54717725-54717744 | Msa1110110:intron | 30.0% |
| CTCAAGGATAGTTATGAAAT+TGG | + | chr7_3:54717804-54717823 | Msa1110110:intron | 30.0% | |
| TTGTCAAGATTCAATTAGTG+TGG | - | chr7_3:54717834-54717853 | None:intergenic | 30.0% | |
| !! | AGTTTTTCAACAAGTCTTCT+AGG | + | chr7_3:54717872-54717891 | Msa1110110:intron | 30.0% |
| ! | GTTGTTACTTAGGATAAAAG+TGG | - | chr7_3:54718055-54718074 | None:intergenic | 30.0% |
| !! | GGTAGAATTTGTTGTTACTT+AGG | - | chr7_3:54718065-54718084 | None:intergenic | 30.0% |
| ! | TGATACTTTGTTTGAGAGAT+TGG | + | chr7_3:54718116-54718135 | Msa1110110:intron | 30.0% |
| ! | CCAACTTTTCAATATAACCT+AGG | - | chr7_3:54718350-54718369 | None:intergenic | 30.0% |
| CCTAGGTTATATTGAAAAGT+TGG | + | chr7_3:54718347-54718366 | Msa1110110:intron | 30.0% | |
| GACATGAAAATGTGTAGAAA+AGG | - | chr7_3:54718385-54718404 | None:intergenic | 30.0% | |
| ! | CACATTTTCATGTCTTTTCT+TGG | + | chr7_3:54718391-54718410 | Msa1110110:intron | 30.0% |
| ATTCTTCACTTAGCTTATCA+TGG | + | chr7_3:54718686-54718705 | Msa1110110:intron | 30.0% | |
| GGATTTCAAACATTGAAAAG+AGG | - | chr7_3:54718734-54718753 | None:intergenic | 30.0% | |
| AGAAATGTAGAACACAGAAA+TGG | - | chr7_3:54718802-54718821 | None:intergenic | 30.0% | |
| ATAAGTAAGGAAAGAGAGAA+AGG | - | chr7_3:54719055-54719074 | None:intergenic | 30.0% | |
| CTTTCCTTACTTATGTTACA+TGG | + | chr7_3:54719061-54719080 | Msa1110110:intron | 30.0% | |
| GAAACCATGTAACATAAGTA+AGG | - | chr7_3:54719068-54719087 | None:intergenic | 30.0% | |
| ACATGGTTTCTTTCTATTTC+AGG | + | chr7_3:54719078-54719097 | Msa1110110:intron | 30.0% | |
| ACATATGCTATGAAGTTTGT+TGG | + | chr7_3:54719155-54719174 | Msa1110110:CDS | 30.0% | |
| ! | TTTAAGTTTATCAAGTCTGG+GGG | - | chr7_3:54719330-54719349 | None:intergenic | 30.0% |
| CTAGATCAGGATTATATAAC+TGG | + | chr7_3:54719420-54719439 | Msa1110110:CDS | 30.0% | |
| !! | ATTAGTTGATGAGAGTTACA+TGG | + | chr7_3:54719535-54719554 | Msa1110110:CDS | 30.0% |
| ! | AAAATTCAGTGTTGAATGAC+TGG | + | chr7_3:54719582-54719601 | Msa1110110:CDS | 30.0% |
| ! | AGAATTTTATGGAAGAATGG+AGG | + | chr7_3:54719813-54719832 | Msa1110110:CDS | 30.0% |
| TACTATCTTGCACTGAAAAT+TGG | - | chr7_3:54720205-54720224 | None:intergenic | 30.0% | |
| TGAAAACAGGGGAAATAAAA+AGG | - | chr7_3:54720342-54720361 | None:intergenic | 30.0% | |
| ! | GCTAAGCTTGACTTAAATTT+TGG | - | chr7_3:54720395-54720414 | None:intergenic | 30.0% |
| !! | AAATGATCATTCTAGAGTGA+TGG | + | chr7_3:54720417-54720436 | Msa1110110:three_prime_UTR | 30.0% |
| ATTCAATTGACAGCACTGTT+AGG | + | chr7_3:54716284-54716303 | Msa1110110:intron | 35.0% | |
| TTCAATTGACAGCACTGTTA+GGG | + | chr7_3:54716285-54716304 | Msa1110110:intron | 35.0% | |
| ! | AGTTCAAATAAGGGCTTGTT+TGG | - | chr7_3:54716502-54716521 | None:intergenic | 35.0% |
| TCAACTATCTTGAGAGCTTA+TGG | - | chr7_3:54716612-54716631 | None:intergenic | 35.0% | |
| TATCACAGTATTGTCCTGTT+TGG | - | chr7_3:54716734-54716753 | None:intergenic | 35.0% | |
| ! | TATGTTTTTCTCCTTTGTCC+GGG | + | chr7_3:54716804-54716823 | Msa1110110:intron | 35.0% |
| TCGACGAAAAGAAAAGGATA+AGG | - | chr7_3:54716852-54716871 | None:intergenic | 35.0% | |
| TAGAAGTCGACGAAAAGAAA+AGG | - | chr7_3:54716858-54716877 | None:intergenic | 35.0% | |
| CTAGCAATATGCATAGTCTA+CGG | + | chr7_3:54716875-54716894 | Msa1110110:intron | 35.0% | |
| TAGCAATATGCATAGTCTAC+GGG | + | chr7_3:54716876-54716895 | Msa1110110:intron | 35.0% | |
| TGTTTAGTGAAAGGGTGAAA+TGG | + | chr7_3:54716932-54716951 | Msa1110110:intron | 35.0% | |
| !! | TGATCTCATAATTCTAGAGC+TGG | + | chr7_3:54717058-54717077 | Msa1110110:CDS | 35.0% |
| !! | TCCCAGATGTTTTGAATGAA+AGG | + | chr7_3:54717093-54717112 | Msa1110110:CDS | 35.0% |
| ! | GAGTTTGTTCCACCTAATTA+CGG | - | chr7_3:54717254-54717273 | None:intergenic | 35.0% |
| AGTCAAAAACTCATATGCTC+TGG | - | chr7_3:54717321-54717340 | None:intergenic | 35.0% | |
| AATGGCTTAGTGAAGACATT+TGG | + | chr7_3:54717357-54717376 | Msa1110110:intron | 35.0% | |
| GAGCCATATAAGTTCATATG+TGG | + | chr7_3:54717534-54717553 | Msa1110110:intron | 35.0% | |
| CCACCACATATGAACTTATA+TGG | - | chr7_3:54717540-54717559 | None:intergenic | 35.0% | |
| CCATATAAGTTCATATGTGG+TGG | + | chr7_3:54717537-54717556 | Msa1110110:intron | 35.0% | |
| !!! | TGGATATTTTAAAGTGGCCT+GGG | - | chr7_3:54717679-54717698 | None:intergenic | 35.0% |
| !!! | TTGGATATTTTAAAGTGGCC+TGG | - | chr7_3:54717680-54717699 | None:intergenic | 35.0% |
| ATTAAGGGAGACCTATGAAA+AGG | - | chr7_3:54717739-54717758 | None:intergenic | 35.0% | |
| AAATGTGTAGAAAAGGGACT+TGG | - | chr7_3:54718378-54718397 | None:intergenic | 35.0% | |
| GTTTAAACTATGTCTGACGA+GGG | - | chr7_3:54718554-54718573 | None:intergenic | 35.0% | |
| TAAGTGAAGAATCACCACAA+AGG | - | chr7_3:54718678-54718697 | None:intergenic | 35.0% | |
| CTTATCATGGTCTATGAGTT+TGG | + | chr7_3:54718699-54718718 | Msa1110110:intron | 35.0% | |
| AAACATTGAAAAGAGGAGAG+TGG | - | chr7_3:54718727-54718746 | None:intergenic | 35.0% | |
| !! | CACAGAAATGGATTAGAAAC+TGG | - | chr7_3:54718790-54718809 | None:intergenic | 35.0% |
| GGTTTCTTTCTATTTCAGGA+TGG | + | chr7_3:54719082-54719101 | Msa1110110:intron | 35.0% | |
| ! | TATTTCAGGATGGTCTTAAG+AGG | + | chr7_3:54719092-54719111 | Msa1110110:intron | 35.0% |
| TGGTACAAGCAAAACAGAAT+TGG | - | chr7_3:54719186-54719205 | None:intergenic | 35.0% | |
| !! | TACGATTCTGATTGATTTGC+TGG | - | chr7_3:54719209-54719228 | None:intergenic | 35.0% |
| AGTGTACTAAAAGTTGTACC+TGG | + | chr7_3:54719281-54719300 | Msa1110110:CDS | 35.0% | |
| AAAAGTTGTACCTGGTAGTA+TGG | + | chr7_3:54719289-54719308 | Msa1110110:CDS | 35.0% | |
| CAGATTTGATGAGAATGACA+TGG | + | chr7_3:54719373-54719392 | Msa1110110:CDS | 35.0% | |
| AAATATTCAAGCTAGTGACG+AGG | + | chr7_3:54719457-54719476 | Msa1110110:CDS | 35.0% | |
| AGATGAAGTTGTGAATATGC+TGG | + | chr7_3:54719625-54719644 | Msa1110110:CDS | 35.0% | |
| GAAAATGATTGCATGCAAAG+TGG | + | chr7_3:54719713-54719732 | Msa1110110:CDS | 35.0% | |
| TATGCTAGAGAAATCCTGAA+AGG | + | chr7_3:54719773-54719792 | Msa1110110:CDS | 35.0% | |
| CCTTCCATAAGATCAAAAGT+GGG | - | chr7_3:54719863-54719882 | None:intergenic | 35.0% | |
| ACCTTCCATAAGATCAAAAG+TGG | - | chr7_3:54719864-54719883 | None:intergenic | 35.0% | |
| ! | TTTTGATCTTATGGAAGGTG+AGG | + | chr7_3:54719865-54719884 | Msa1110110:CDS | 35.0% |
| !! | GAGGTATTGACAGAGAAAAT+TGG | + | chr7_3:54719884-54719903 | Msa1110110:CDS | 35.0% |
| AGAAAATTGGAGTTGAGACA+TGG | + | chr7_3:54719897-54719916 | Msa1110110:CDS | 35.0% | |
| GAAAATTGGAGTTGAGACAT+GGG | + | chr7_3:54719898-54719917 | Msa1110110:CDS | 35.0% | |
| ! | TTTTGAATGTTTCAGGGATC+TGG | + | chr7_3:54720105-54720124 | Msa1110110:intron | 35.0% |
| TTTCAGTGCAAGATAGTATC+TGG | + | chr7_3:54720207-54720226 | Msa1110110:exon | 35.0% | |
| ! | TCTATTTAAAGTGACGAGGA+AGG | - | chr7_3:54720281-54720300 | None:intergenic | 35.0% |
| CGGTGGAATTCTATACATAG+AGG | - | chr7_3:54716194-54716213 | None:intergenic | 40.0% | |
| ATTGCTTTAGTGCGCAATTG+CGG | - | chr7_3:54716266-54716285 | None:intergenic | 40.0% | |
| ACACTTAGACATATGTCACC+TGG | + | chr7_3:54716990-54717009 | Msa1110110:CDS | 40.0% | |
| ! | GTTGCATATCACCCTGATTT+TGG | + | chr7_3:54717026-54717045 | Msa1110110:CDS | 40.0% |
| CATCATGAGGTCCAAAATCA+GGG | - | chr7_3:54717040-54717059 | None:intergenic | 40.0% | |
| TCATCATGAGGTCCAAAATC+AGG | - | chr7_3:54717041-54717060 | None:intergenic | 40.0% | |
| ! | ACTCATATGCTCTGGCTTAA+GGG | - | chr7_3:54717313-54717332 | None:intergenic | 40.0% |
| ! | AACTCATATGCTCTGGCTTA+AGG | - | chr7_3:54717314-54717333 | None:intergenic | 40.0% |
| GAAACATCTCCAAACCTCAA+TGG | + | chr7_3:54717492-54717511 | Msa1110110:intron | 40.0% | |
| ! | GGAGACCTATGAAAAGGTTT+TGG | - | chr7_3:54717733-54717752 | None:intergenic | 40.0% |
| AAAAATGTCTCCTCCTGACT+TGG | + | chr7_3:54717907-54717926 | Msa1110110:intron | 40.0% | |
| ! | CAAATTTTTGCCAAGTCAGG+AGG | - | chr7_3:54717920-54717939 | None:intergenic | 40.0% |
| !! | CTCCTGACTTGGCAAAAATT+TGG | + | chr7_3:54717918-54717937 | Msa1110110:intron | 40.0% |
| ! | TGCCAAATTTTTGCCAAGTC+AGG | - | chr7_3:54717923-54717942 | None:intergenic | 40.0% |
| ACTTGGCAAAAATTTGGCAC+TGG | + | chr7_3:54717924-54717943 | Msa1110110:intron | 40.0% | |
| ! | AATTTGGCACTGGAACTTGT+AGG | + | chr7_3:54717934-54717953 | Msa1110110:intron | 40.0% |
| GAACTTGTAGGAGTTTCAAG+AGG | + | chr7_3:54717946-54717965 | Msa1110110:intron | 40.0% | |
| AATGACATTAGAAAGCCGAG+TGG | + | chr7_3:54718199-54718218 | Msa1110110:intron | 40.0% | |
| TTGTCTACACCAACTTCCTA+GGG | - | chr7_3:54718286-54718305 | None:intergenic | 40.0% | |
| ATTGTCTACACCAACTTCCT+AGG | - | chr7_3:54718287-54718306 | None:intergenic | 40.0% | |
| ! | ACTAGTTTGAAAACTCCCCT+AGG | + | chr7_3:54718330-54718349 | Msa1110110:intron | 40.0% |
| TTGGAAAACTTGGGAAAGGA+AGG | - | chr7_3:54718452-54718471 | None:intergenic | 40.0% | |
| ! | TTCCTTTCCCAAGTTTTCCA+AGG | + | chr7_3:54718451-54718470 | Msa1110110:intron | 40.0% |
| GAAGACACCTTGGAAAACTT+GGG | - | chr7_3:54718461-54718480 | None:intergenic | 40.0% | |
| TGAAGACACCTTGGAAAACT+TGG | - | chr7_3:54718462-54718481 | None:intergenic | 40.0% | |
| TCAAATGCATGAAGACACCT+TGG | - | chr7_3:54718471-54718490 | None:intergenic | 40.0% | |
| AGGTGTCTTCATGCATTTGA+AGG | + | chr7_3:54718471-54718490 | Msa1110110:intron | 40.0% | |
| ACCTCTAAGCAACAAAGGAA+GGG | - | chr7_3:54718507-54718526 | None:intergenic | 40.0% | |
| CGTTTAAACTATGTCTGACG+AGG | - | chr7_3:54718555-54718574 | None:intergenic | 40.0% | |
| !!! | GAGAGCATTGTGCATCTTTT+TGG | + | chr7_3:54718606-54718625 | Msa1110110:intron | 40.0% |
| ! | CCTTTGATAAGAGTCGACTT+TGG | - | chr7_3:54718646-54718665 | None:intergenic | 40.0% |
| ! | CCAAAGTCGACTCTTATCAA+AGG | + | chr7_3:54718643-54718662 | Msa1110110:intron | 40.0% |
| AAAGGTTCCTCATACCTTTG+TGG | + | chr7_3:54718661-54718680 | Msa1110110:intron | 40.0% | |
| ! | AGAATCACCACAAAGGTATG+AGG | - | chr7_3:54718671-54718690 | None:intergenic | 40.0% |
| TAAGGAAAGAGAGAAAGGCA+GGG | - | chr7_3:54719050-54719069 | None:intergenic | 40.0% | |
| !! | GATTCTGATTGATTTGCTGG+TGG | - | chr7_3:54719206-54719225 | None:intergenic | 40.0% |
| TCAATAAGCTCCATACTACC+AGG | - | chr7_3:54719302-54719321 | None:intergenic | 40.0% | |
| TGGTAGTATGGAGCTTATTG+AGG | + | chr7_3:54719301-54719320 | Msa1110110:CDS | 40.0% | |
| GAGAATCACGAATCTAGATC+AGG | + | chr7_3:54719407-54719426 | Msa1110110:CDS | 40.0% | |
| CTGTGGAGATCAATGGATAT+TGG | + | chr7_3:54719510-54719529 | Msa1110110:CDS | 40.0% | |
| GAGTTACATGGACATGATTC+TGG | + | chr7_3:54719547-54719566 | Msa1110110:CDS | 40.0% | |
| GTGAATATGCTGGAATCAGA+TGG | + | chr7_3:54719635-54719654 | Msa1110110:CDS | 40.0% | |
| ACTTTCTCTTACCTCCTTTC+AGG | - | chr7_3:54719790-54719809 | None:intergenic | 40.0% | |
| AAAGTGGGATGCATTTCATC+TGG | - | chr7_3:54719848-54719867 | None:intergenic | 40.0% | |
| !! | GCATCCCACTTTTGATCTTA+TGG | + | chr7_3:54719856-54719875 | Msa1110110:CDS | 40.0% |
| !! | CCCACTTTTGATCTTATGGA+AGG | + | chr7_3:54719860-54719879 | Msa1110110:CDS | 40.0% |
| AAGATCTACAGCCCTATATC+AGG | + | chr7_3:54720008-54720027 | Msa1110110:CDS | 40.0% | |
| ATTGGATCATCATTAGCCGA+CGG | - | chr7_3:54720187-54720206 | None:intergenic | 40.0% | |
| TACATCCTTCACAGTCCTTA+TGG | + | chr7_3:54720255-54720274 | Msa1110110:three_prime_UTR | 40.0% | |
| ! | ACGGTCTATTTAAAGTGACG+AGG | - | chr7_3:54720285-54720304 | None:intergenic | 40.0% |
| ! | ATAAGCGAGTACTGTGCTTA+CGG | - | chr7_3:54720304-54720323 | None:intergenic | 40.0% |
| AACCTGGAGTTTGTCTGTCA+CGG | - | chr7_3:54716142-54716161 | None:intergenic | 45.0% | |
| TTTACAGCAGACGCAAATCG+CGG | - | chr7_3:54716214-54716233 | None:intergenic | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr7_3:54716544-54716563 | Msa1110110:intron | 45.0% | |
| GATAAGGAGTTGGACATCCT+AGG | - | chr7_3:54716836-54716855 | None:intergenic | 45.0% | |
| GCAACAGAAATCGATGATCC+AGG | - | chr7_3:54717011-54717030 | None:intergenic | 45.0% | |
| !!! | CTGACAGGTGAGCCATTTTT+GGG | - | chr7_3:54717644-54717663 | None:intergenic | 45.0% |
| !! | ACTGACAGGTGAGCCATTTT+TGG | - | chr7_3:54717645-54717664 | None:intergenic | 45.0% |
| GGGCAAAGTCTAATACTGAC+AGG | - | chr7_3:54717659-54717678 | None:intergenic | 45.0% | |
| GTCAGTATTAGACTTTGCCC+AGG | + | chr7_3:54717659-54717678 | Msa1110110:intron | 45.0% | |
| GCATTCTGTTGCTCTTCTCA+AGG | + | chr7_3:54717788-54717807 | Msa1110110:intron | 45.0% | |
| TCTAAGTGAAGCTGACCACT+CGG | - | chr7_3:54718217-54718236 | None:intergenic | 45.0% | |
| AACTTGTCAAGCTATGCCCT+AGG | + | chr7_3:54718267-54718286 | Msa1110110:intron | 45.0% | |
| TCTTCATGTCCTCCTTGAGT+TGG | + | chr7_3:54718416-54718435 | Msa1110110:intron | 45.0% | |
| CACCTTGGAAAACTTGGGAA+AGG | - | chr7_3:54718456-54718475 | None:intergenic | 45.0% | |
| GACCTCTAAGCAACAAAGGA+AGG | - | chr7_3:54718508-54718527 | None:intergenic | 45.0% | |
| AGGTGACCTCTAAGCAACAA+AGG | - | chr7_3:54718512-54718531 | None:intergenic | 45.0% | |
| GTAAGGAAAGAGAGAAAGGC+AGG | - | chr7_3:54719051-54719070 | None:intergenic | 45.0% | |
| CAAAGAACTGCATCTTCGTC+AGG | - | chr7_3:54719122-54719141 | None:intergenic | 45.0% | |
| AAGCTAGTGACGAGGAGTTA+AGG | + | chr7_3:54719465-54719484 | Msa1110110:CDS | 45.0% | |
| AGCTAGTGACGAGGAGTTAA+GGG | + | chr7_3:54719466-54719485 | Msa1110110:CDS | 45.0% | |
| CTTTCAGCTGTGGAGATCAA+TGG | + | chr7_3:54719503-54719522 | Msa1110110:CDS | 45.0% | |
| ! | GGAATCAGATGGATTTCCGA+AGG | + | chr7_3:54719646-54719665 | Msa1110110:CDS | 45.0% |
| !! | GATTTCCGAAGGTACTTGCA+AGG | + | chr7_3:54719657-54719676 | Msa1110110:CDS | 45.0% |
| CAATGCCTTGCAAGTACCTT+CGG | - | chr7_3:54719665-54719684 | None:intergenic | 45.0% | |
| TTGCTTGCATGTGTATGCCA+AGG | + | chr7_3:54719682-54719701 | Msa1110110:CDS | 45.0% | |
| ATTGCATGCAAAGTGGTGTG+TGG | + | chr7_3:54719720-54719739 | Msa1110110:CDS | 45.0% | |
| TGTGGAAGTTGGATGAGAAG+CGG | + | chr7_3:54719738-54719757 | Msa1110110:CDS | 45.0% | |
| GCTAGAGAAATCCTGAAAGG+AGG | + | chr7_3:54719776-54719795 | Msa1110110:CDS | 45.0% | |
| TGGAAGGCAATGAAGAGACA+CGG | - | chr7_3:54719934-54719953 | None:intergenic | 45.0% | |
| !! | TTTTCAGAGAGCGTGCGAAA+TGG | + | chr7_3:54719978-54719997 | Msa1110110:CDS | 45.0% |
| ! | TTTCAGAGAGCGTGCGAAAT+GGG | + | chr7_3:54719979-54719998 | Msa1110110:CDS | 45.0% |
| AAACCTTCTGCAGAAAGACC+TGG | - | chr7_3:54720136-54720155 | None:intergenic | 45.0% | |
| !! | CTAATTAAAAAATATATTAA+GGG | - | chr7_3:54717754-54717773 | None:intergenic | 5.0% |
| !! | TCTAATTAAAAAATATATTA+AGG | - | chr7_3:54717755-54717774 | None:intergenic | 5.0% |
| !!! | AAAATTTTAATTAAAAGAAA+TGG | - | chr7_3:54718755-54718774 | None:intergenic | 5.0% |
| AGTTCGGCTGTGTGTGTTTC+CGG | - | chr7_3:54716085-54716104 | None:intergenic | 50.0% | |
| CTTCCAACGACGGTCAAGTT+CGG | - | chr7_3:54716101-54716120 | None:intergenic | 50.0% | |
| TTGTCTGTCACGGTGGTTTC+TGG | - | chr7_3:54716132-54716151 | None:intergenic | 50.0% | |
| CAATTGCGGAATCGCAATGG+TGG | - | chr7_3:54716252-54716271 | None:intergenic | 50.0% | |
| CTAGGTACAAACCCGGACAA+AGG | - | chr7_3:54716818-54716837 | None:intergenic | 50.0% | |
| CTTTGTCCGGGTTTGTACCT+AGG | + | chr7_3:54716816-54716835 | Msa1110110:intron | 50.0% | |
| GGACATCCTAGGTACAAACC+CGG | - | chr7_3:54716825-54716844 | None:intergenic | 50.0% | |
| CAAGCTATGCCCTAGGAAGT+TGG | + | chr7_3:54718274-54718293 | Msa1110110:intron | 50.0% | |
| CTACATGCACCAACTCAAGG+AGG | - | chr7_3:54718428-54718447 | None:intergenic | 50.0% | |
| GGACTACATGCACCAACTCA+AGG | - | chr7_3:54718431-54718450 | None:intergenic | 50.0% | |
| ! | GCCCTTCCTTTGTTGCTTAG+AGG | + | chr7_3:54718503-54718522 | Msa1110110:intron | 50.0% |
| TTAGAGGTCACCTCCCTCAA+AGG | + | chr7_3:54718519-54718538 | Msa1110110:intron | 50.0% | |
| AGGGCAAAGAGAGCCTTTGA+GGG | - | chr7_3:54718535-54718554 | None:intergenic | 50.0% | |
| AGTGACGAGGAGTTAAGGGT+TGG | + | chr7_3:54719470-54719489 | Msa1110110:CDS | 50.0% | |
| GGAGTTAAGGGTTGGATTGC+AGG | + | chr7_3:54719478-54719497 | Msa1110110:CDS | 50.0% | |
| ATTGCAGGCTCTTTCAGCTG+TGG | + | chr7_3:54719493-54719512 | Msa1110110:CDS | 50.0% | |
| GCAAAGTGGTGTGTGGAAGT+TGG | + | chr7_3:54719727-54719746 | Msa1110110:CDS | 50.0% | |
| GTGGAAGTTGGATGAGAAGC+GGG | + | chr7_3:54719739-54719758 | Msa1110110:CDS | 50.0% | |
| AGGCAATGAAGAGACACGGA+AGG | - | chr7_3:54719930-54719949 | None:intergenic | 50.0% | |
| !! | AGAATGGAGAAGCGTTCAGC+TGG | - | chr7_3:54719959-54719978 | None:intergenic | 50.0% |
| ! | CGCACGCTCTCTGAAAAGAA+TGG | - | chr7_3:54719975-54719994 | None:intergenic | 50.0% |
| TTCAGGGATCTGGATGTACC+AGG | + | chr7_3:54720115-54720134 | Msa1110110:intron | 50.0% | |
| GTACCAGGTCTTTCTGCAGA+AGG | + | chr7_3:54720130-54720149 | Msa1110110:CDS | 50.0% | |
| CACTCGAAAGACACAACCGT+CGG | + | chr7_3:54720168-54720187 | Msa1110110:CDS | 50.0% | |
| GAAGGCCATAAGGACTGTGA+AGG | - | chr7_3:54720263-54720282 | None:intergenic | 50.0% | |
| AAGTGACGAGGAAGGCCATA+AGG | - | chr7_3:54720273-54720292 | None:intergenic | 50.0% | |
| CCGGGCAGTTGAGATCAGTT+CGG | - | chr7_3:54716066-54716085 | None:intergenic | 55.0% | |
| CCGAACTGATCTCAACTGCC+CGG | + | chr7_3:54716063-54716082 | Msa1110110:five_prime_UTR | 55.0% | |
| GTTCGGCTGTGTGTGTTTCC+GGG | - | chr7_3:54716084-54716103 | None:intergenic | 55.0% | |
| ! | TCTGTCACGGTGGTTTCTGG+CGG | - | chr7_3:54716129-54716148 | None:intergenic | 55.0% |
| CTGGAGTTTGTCTGTCACGG+TGG | - | chr7_3:54716139-54716158 | None:intergenic | 55.0% | |
| CACCGTGACAGACAAACTCC+AGG | + | chr7_3:54716137-54716156 | Msa1110110:five_prime_UTR | 55.0% | |
| GCGCAATTGCGGAATCGCAA+TGG | - | chr7_3:54716255-54716274 | None:intergenic | 55.0% | |
| CCTGAAGTCTGCTGTGGTTC+TGG | - | chr7_3:54716960-54716979 | None:intergenic | 55.0% | |
| CCAGAACCACAGCAGACTTC+AGG | + | chr7_3:54716957-54716976 | Msa1110110:CDS | 55.0% | |
| GAACCACAGCAGACTTCAGG+AGG | + | chr7_3:54716960-54716979 | Msa1110110:CDS | 55.0% | |
| ACAGCAGACTTCAGGAGGAG+CGG | + | chr7_3:54716965-54716984 | Msa1110110:CDS | 55.0% | |
| ! | GCAAAGAGAGCCTTTGAGGG+AGG | - | chr7_3:54718532-54718551 | None:intergenic | 55.0% |
| GAGGGCAAAGAGAGCCTTTG+AGG | - | chr7_3:54718536-54718555 | None:intergenic | 55.0% | |
| AAGCGTTCAGCTGGAGTGGA+AGG | - | chr7_3:54719950-54719969 | None:intergenic | 55.0% | |
| ! | GAGAGCGTGCGAAATGGGAA+TGG | + | chr7_3:54719984-54720003 | Msa1110110:CDS | 55.0% |
| CAGCCGAACTTGACCGTCGT+TGG | + | chr7_3:54716095-54716114 | Msa1110110:five_prime_UTR | 60.0% | |
| GGCGGCGTTTCTTCCAACGA+CGG | - | chr7_3:54716111-54716130 | None:intergenic | 60.0% | |
| ACAGCAGACGCAAATCGCGG+TGG | - | chr7_3:54716211-54716230 | None:intergenic | 60.0% | |
| GCTCCTCCTGAAGTCTGCTG+TGG | - | chr7_3:54716966-54716985 | None:intergenic | 60.0% | |
| !! | GGAGAAGCGTTCAGCTGGAG+TGG | - | chr7_3:54719954-54719973 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 54716022 | 54720466 | 54716022 | ID=Msa1110110;Name=Msa1110110 |
| chr7_3 | mRNA | 54716022 | 54720466 | 54716022 | ID=Msa1110110-mRNA-1;Parent=Msa1110110;Name=Msa1110110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=149|1|1|1|0.66|0.5|4|244|398 |
| chr7_3 | exon | 54716022 | 54716158 | 54716022 | ID=Msa1110110-mRNA-1:exon:11519;Parent=Msa1110110-mRNA-1 |
| chr7_3 | exon | 54716939 | 54717114 | 54716939 | ID=Msa1110110-mRNA-1:exon:11520;Parent=Msa1110110-mRNA-1 |
| chr7_3 | exon | 54719100 | 54720029 | 54719100 | ID=Msa1110110-mRNA-1:exon:11521;Parent=Msa1110110-mRNA-1 |
| chr7_3 | exon | 54720120 | 54720466 | 54720120 | ID=Msa1110110-mRNA-1:exon:11522;Parent=Msa1110110-mRNA-1 |
| chr7_3 | five_prime_UTR | 54716022 | 54716158 | 54716022 | ID=Msa1110110-mRNA-1:five_prime_utr;Parent=Msa1110110-mRNA-1 |
| chr7_3 | five_prime_UTR | 54716939 | 54716950 | 54716939 | ID=Msa1110110-mRNA-1:five_prime_utr;Parent=Msa1110110-mRNA-1 |
| chr7_3 | CDS | 54716951 | 54717114 | 54716951 | ID=Msa1110110-mRNA-1:cds;Parent=Msa1110110-mRNA-1 |
| chr7_3 | CDS | 54719100 | 54720029 | 54719100 | ID=Msa1110110-mRNA-1:cds;Parent=Msa1110110-mRNA-1 |
| chr7_3 | CDS | 54720120 | 54720222 | 54720120 | ID=Msa1110110-mRNA-1:cds;Parent=Msa1110110-mRNA-1 |
| chr7_3 | three_prime_UTR | 54720223 | 54720466 | 54720223 | ID=Msa1110110-mRNA-1:three_prime_utr;Parent=Msa1110110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
