AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0690860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690860 MtrunA17_Chr4g0039731 97.019 805 17 4 1 800 1 803 0.0 1595
Msa0690860 MtrunA17_Chr3g0086081 35.526 228 135 2 179 402 7 226 3.66e-36 140
Msa0690860 MtrunA17_Chr1g0176161 28.324 346 218 10 153 475 148 486 1.60e-23 105
Msa0690860 MtrunA17_Chr1g0168171 58.025 81 32 2 230 309 2 81 2.10e-23 95.1
Msa0690860 MtrunA17_Chr8g0345501 23.301 309 216 5 161 466 409 699 4.04e-23 105
Msa0690860 MtrunA17_Chr8g0345501 43.182 88 50 0 3 90 7 94 3.03e-17 86.7
Msa0690860 MtrunA17_Chr4g0025081 31.835 267 153 9 155 399 223 482 1.30e-21 99.4
Msa0690860 MtrunA17_Chr1g0179631 28.936 235 162 3 174 403 526 760 1.85e-18 90.5
Msa0690860 MtrunA17_Chr4g0010341 31.655 139 91 1 161 295 185 323 5.88e-18 87.8
Msa0690860 MtrunA17_Chr2g0295581 44.565 92 49 1 172 263 48 137 2.41e-17 85.1
Msa0690860 MtrunA17_Chr2g0314741 48.780 82 41 1 3 83 7 88 1.74e-16 82.0
Msa0690860 MtrunA17_Chr7g0245281 46.988 83 42 1 341 423 24 104 3.32e-16 75.1
Msa0690860 MtrunA17_Chr1g0176171 43.373 83 47 0 3 85 8 90 1.34e-14 73.9
Msa0690860 MtrunA17_Chr2g0322881 25.000 328 219 10 159 470 331 647 1.38e-12 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 255 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCATCCAGTCACACTTTC+AGG 0.156242 4_4:-58771957 Msa0690860:CDS
CACCTCCATATGTGGAGTTT+TGG 0.190669 4_4:+58772323 None:intergenic
CTATCTCCTGCATCCCGTTC+TGG 0.201986 4_4:+58771190 None:intergenic
GTCTGAAACTTGGAGAGTTT+TGG 0.224219 4_4:+58772194 None:intergenic
CAAAGAATCATCAAGCTAAA+AGG 0.225169 4_4:-58769961 Msa0690860:CDS
CAAAGAATCATCAAGCTAAA+AGG 0.225169 4_4:-58770252 Msa0690860:CDS
CAAAGCAACATCATGCTAAA+AGG 0.228413 4_4:-58770396 Msa0690860:CDS
AATTACGATTGGCCTTATTT+TGG 0.229178 4_4:+58771607 None:intergenic
AATGGGAGATGCAGAGAGAT+AGG 0.229201 4_4:+58774152 None:intergenic
CTTTCAGCTTGATGATTCTT+TGG 0.237633 4_4:+58770109 None:intergenic
CAAAGCAGCGTCAAGCTAAA+AGG 0.248224 4_4:-58770465 Msa0690860:CDS
ATCCTCTGTATGAGGAGTTT+TGG 0.284042 4_4:+58772236 None:intergenic
TCCTCTTCTGAAGGAACTTT+GGG 0.285401 4_4:+58772285 None:intergenic
TGGGTTTCAACTAAACTATT+TGG 0.290355 4_4:-58772430 Msa0690860:CDS
CTTATACGGCCCTGTGGTCT+AGG 0.301558 4_4:-58772147 Msa0690860:CDS
GACGAAGACAATTTGTTAGA+TGG 0.302419 4_4:-58770211 Msa0690860:CDS
TTGGCTAGAGATCTTTATAA+AGG 0.321950 4_4:+58771626 None:intergenic
AAAGATCTCTAGCCAAAATA+AGG 0.326488 4_4:-58771619 Msa0690860:CDS
GAATATTGGTGGAAGTTGTT+TGG 0.327898 4_4:-58771893 Msa0690860:CDS
TGAGTTTGTTAGTGGAGTTC+AGG 0.329607 4_4:-58772580 Msa0690860:CDS
CTCCTCTTCTGAAGGAACTT+TGG 0.330128 4_4:+58772284 None:intergenic
CTTTCAGCTTGATGATGCTT+TGG 0.336556 4_4:+58770535 None:intergenic
GTGCTGCGGCAGCCTCTTTA+CGG 0.338605 4_4:+58770983 None:intergenic
AATATTGGTGGAAGTTGTTT+GGG 0.347492 4_4:-58771892 Msa0690860:CDS
GAAATTTAGCGCGATCCAAC+TGG 0.350672 4_4:-58774203 Msa0690860:five_prime_UTR
GCTTCACGTATGGTGATTCT+TGG 0.372919 4_4:+58774112 None:intergenic
AAAGAATCATCAAGCTAAAA+GGG 0.374571 4_4:-58769960 Msa0690860:CDS
AAAGAATCATCAAGCTAAAA+GGG 0.374571 4_4:-58770251 Msa0690860:CDS
GAAACAACATTATCAGCATT+TGG 0.377989 4_4:-58770899 Msa0690860:CDS
CAATATTCCCTTACATCCTC+TGG 0.378318 4_4:+58771908 None:intergenic
TTCAACTAAACTATTTGGTC+TGG 0.381910 4_4:-58772425 Msa0690860:CDS
CTTGTGGTTTATATTTAAAT+CGG 0.382135 4_4:-58769767 Msa0690860:three_prime_UTR
TATCTCCTGCATCCCGTTCT+GGG 0.384815 4_4:+58771191 None:intergenic
CATTCTGCTTGTCTGAAACT+TGG 0.385118 4_4:+58772184 None:intergenic
TTCAGGGTCCTTTCTATCGC+TGG 0.387154 4_4:-58771940 Msa0690860:CDS
AAGGAGGTACAAACACAAAA+TGG 0.387875 4_4:-58771222 Msa0690860:CDS
GAAAGAAACATCTAGCTCTA+AGG 0.395879 4_4:-58770681 Msa0690860:CDS
AACGGGATGCAGGAGATAGA+TGG 0.396181 4_4:-58771186 Msa0690860:CDS
GGAGGCTGCTGCAGCACGTC+AGG 0.396719 4_4:-58770956 Msa0690860:CDS
CAGAGGATGTAAGGGAATAT+TGG 0.403849 4_4:-58771907 Msa0690860:CDS
GTCATTACCGTAGTTGAGTT+TGG 0.405893 4_4:-58769877 Msa0690860:exon
TGATCACACCCACCACTATA+AGG 0.408691 4_4:+58771036 None:intergenic
AAGAGTCGAGGTCGGTGTTA+TGG 0.410049 4_4:-58771123 Msa0690860:CDS
GTGAGACCCCAGAGGATGTA+AGG 0.413212 4_4:-58771916 Msa0690860:CDS
AGAGGCTGCCGCAGCACATC+AGG 0.413600 4_4:-58770977 Msa0690860:CDS
ATGGGAGATGCAGAGAGATA+GGG 0.416013 4_4:+58774153 None:intergenic
GTTTCGACTCAGCTGCCTCC+TGG 0.416729 4_4:+58770917 None:intergenic
ATAAAAGGAAGTCTGGCAAT+TGG 0.418430 4_4:-58771380 Msa0690860:CDS
TGCTTTGGTAAGACCCCGTC+TGG 0.419898 4_4:+58770340 None:intergenic
TATAAACCACAAGTTCAAAC+TGG 0.421652 4_4:+58769777 None:intergenic
TTAATGCAGGCTCAAGAACT+TGG 0.423789 4_4:-58771441 Msa0690860:intron
GGAGGCAGCCACAGCACGCC+AGG 0.425194 4_4:-58770935 Msa0690860:CDS
TGCTTTGGTAAAACCCCATC+TGG 0.426446 4_4:+58770049 None:intergenic
CGCAGGGGACGCCAATCAGC+AGG 0.428309 4_4:-58770793 Msa0690860:CDS
ATGGTAAGGCCTCCCAGAAC+GGG 0.431393 4_4:-58771203 Msa0690860:CDS
CTCTTTACGGACTGCATCAA+TGG 0.432826 4_4:+58770996 None:intergenic
GCTTGGGATCCTCGTGATCA+TGG 0.433534 4_4:-58771789 Msa0690860:CDS
TTGAACTATGAGTTTGTTAG+TGG 0.434300 4_4:-58772588 Msa0690860:CDS
AAAGAATCATCAAGCTGAAA+GGG 0.439093 4_4:-58770107 Msa0690860:CDS
AAAGCAACATCATGCTAAAA+GGG 0.442573 4_4:-58770395 Msa0690860:CDS
CTGATGGGAAGGTTCTTATA+CGG 0.442619 4_4:-58772161 Msa0690860:CDS
AAAGCAGCGTCAAGCTAAAA+GGG 0.443246 4_4:-58770464 Msa0690860:CDS
GCCACCCATAAAAGGAAGTC+TGG 0.448504 4_4:-58771387 Msa0690860:CDS
GTGATTCTTGGCGGCGAGAA+AGG 0.450524 4_4:+58774124 None:intergenic
TAAAAGGAAGTCTGGCAATT+GGG 0.451077 4_4:-58771379 Msa0690860:CDS
ATCGAATAGCAGTAGACATA+TGG 0.451262 4_4:-58772358 Msa0690860:CDS
AACTCCACATATGGAGGTGC+AGG 0.452320 4_4:-58772319 Msa0690860:CDS
CTTGAGCAAAATATTTGTCT+AGG 0.452483 4_4:-58772387 Msa0690860:CDS
GCTCTAGAGCGCCAATCAGC+AGG 0.461373 4_4:-58770841 Msa0690860:CDS
CAGACTTTGCTTTAAACCTC+CGG 0.461416 4_4:-58771095 Msa0690860:CDS
TTATTTCCAGTTTGAACTTG+TGG 0.463871 4_4:-58769783 Msa0690860:three_prime_UTR
CTCTCAAAAGTGAGGAAGAA+GGG 0.464033 4_4:-58771714 Msa0690860:CDS
ACGGTAATGACGACGGCGAC+GGG 0.464069 4_4:+58769889 None:intergenic
GCAGCAGCAGGCGCCGCGCT+AGG 0.466466 4_4:+58771989 None:intergenic
GAAGGGTCTTAATGCCCATT+GGG 0.467273 4_4:-58771658 Msa0690860:CDS
TTCGCTGACTCAGGAGTCTC+GGG 0.469281 4_4:-58771061 Msa0690860:CDS
ACGAAGACAATTTGTTAGAT+GGG 0.469400 4_4:-58770210 Msa0690860:CDS
GCGGCGAGAAAGGGATAGAA+TGG 0.471128 4_4:+58774134 None:intergenic
CATCCTCACTATGATAATGA+TGG 0.471233 4_4:-58770154 Msa0690860:CDS
TCTTCCTGCACCTCCATATG+TGG 0.472883 4_4:+58772315 None:intergenic
GGATCCCAAAACTCCACATA+TGG 0.476165 4_4:-58772328 Msa0690860:CDS
AAAGCATCATCAAGCTGAAA+GGG 0.476885 4_4:-58770533 Msa0690860:CDS
TGCAGATAATGGATCGTAGT+TGG 0.477132 4_4:-58772644 Msa0690860:intron
GCGTGTTTAATCGCAGCAGC+AGG 0.479484 4_4:+58771977 None:intergenic
GTCTCACTCCAGCGATAGAA+AGG 0.483175 4_4:+58771932 None:intergenic
GGCTGCTGCAGCACGTCAGG+AGG 0.484517 4_4:-58770953 Msa0690860:CDS
TAGTTCAAGCCTTTCCTATG+TGG 0.485535 4_4:+58772603 None:intergenic
AGTTCAGGAGTTTATTAAGA+AGG 0.488470 4_4:-58772565 Msa0690860:CDS
CTATGATGATGAGGATTCGC+TGG 0.489767 4_4:-58770569 Msa0690860:CDS
GCCTTTACACGAATTACGAT+TGG 0.490000 4_4:+58771596 None:intergenic
CTTCGCTGACTCAGGAGTCT+CGG 0.490441 4_4:-58771062 Msa0690860:CDS
TAATGACGACGGCGACGGGC+TGG 0.491841 4_4:+58769893 None:intergenic
GGCCTCCCAGAACGGGATGC+AGG 0.492623 4_4:-58771196 Msa0690860:CDS
AGAAGGGGACGAGACCTCAT+TGG 0.497085 4_4:-58771698 Msa0690860:CDS
TCTTCTGAATCCTCTGTATG+AGG 0.497193 4_4:+58772228 None:intergenic
CAGTAGACATATGGAGGAGG+AGG 0.497751 4_4:-58772349 Msa0690860:CDS
GAGCCTTGCGGCCTGTGGTG+TGG 0.498769 4_4:+58771565 None:intergenic
ATTGGATATGTGAAGAGGCT+TGG 0.499061 4_4:-58771680 Msa0690860:CDS
GGAGGAGGAATCAGAAGAGG+AGG 0.501572 4_4:-58772265 Msa0690860:CDS
GGAAGGGTCTTAATGCCCAT+TGG 0.502764 4_4:-58771659 Msa0690860:CDS
GATTCCTCCTCCTCTTCTGA+AGG 0.504118 4_4:+58772276 None:intergenic
CAAGTGCGAGTCAAGCTCGC+AGG 0.505729 4_4:-58770762 Msa0690860:CDS
CAAGTGTGAGTCAAGCTCGC+AGG 0.505729 4_4:-58770810 Msa0690860:CDS
AGCTGCCTCCTGGCGTGCTG+TGG 0.510431 4_4:+58770927 None:intergenic
GATATGTGAAGAGGCTTGGA+AGG 0.511244 4_4:-58771676 Msa0690860:CDS
TCAGACAAGCAGAATGCTGA+TGG 0.511382 4_4:-58772177 Msa0690860:CDS
ATCCTCACTATGATAATGAT+GGG 0.512412 4_4:-58770153 Msa0690860:CDS
CAAAGAATCATCAAGCTGAA+AGG 0.512957 4_4:-58770108 Msa0690860:CDS
AATATTCCCTTACATCCTCT+GGG 0.513122 4_4:+58771909 None:intergenic
CTAGATGTTTCTTTCTTCGA+CGG 0.513717 4_4:+58770689 None:intergenic
TTGTGAAAGCACCTGCTGAT+TGG 0.515650 4_4:+58770782 None:intergenic
AGAGGATTCAGAAGAGGAGG+AGG 0.520308 4_4:-58772220 Msa0690860:CDS
CTAAGAACTCGTCTAGTGAA+TGG 0.521135 4_4:+58770716 None:intergenic
GCCAATCGTAATTCGTGTAA+AGG 0.522365 4_4:-58771597 Msa0690860:CDS
TTGAGCAAAATATTTGTCTA+GGG 0.524348 4_4:-58772386 Msa0690860:CDS
AAAACTCATTTGTACAAGAG+TGG 0.525014 4_4:-58772450 Msa0690860:CDS
AAAGGCTTCACCCTCCCAAT+GGG 0.525570 4_4:+58771644 None:intergenic
TGGTGTAACTTCGCTGACTC+AGG 0.525580 4_4:-58771070 Msa0690860:CDS
GGAGGAATCAGAAGAGGAGG+AGG 0.525843 4_4:-58772262 Msa0690860:CDS
ACGGGATGCAGGAGATAGAT+GGG 0.528666 4_4:-58771185 Msa0690860:CDS
AAGTGTGAGTCAAGCTCGCA+GGG 0.528888 4_4:-58770809 Msa0690860:CDS
ATGATGACGATTTGCCAGAC+GGG 0.529560 4_4:-58770354 Msa0690860:CDS
CTCTCTAGCAGCTTCACGTA+TGG 0.530042 4_4:+58774102 None:intergenic
CAAAGCATCATCAAGCTGAA+AGG 0.530065 4_4:-58770534 Msa0690860:CDS
GCGAATCCTCGTCATTATCA+TGG 0.530875 4_4:+58770290 None:intergenic
ACATATGGAGGTGCAGGAAG+AGG 0.531104 4_4:-58772313 Msa0690860:CDS
TAAGACCTCGTCTAGTGAAT+CGG 0.531398 4_4:+58769916 None:intergenic
TTATACGGCCCTGTGGTCTA+GGG 0.531997 4_4:-58772146 Msa0690860:intron
CGGCGAGAAAGGGATAGAAT+GGG 0.532103 4_4:+58774135 None:intergenic
ACGATGACGATTTGCCAGAT+GGG 0.532630 4_4:-58770063 Msa0690860:CDS
TTGTGAAAGCACCTGCTGAT+TGG 0.534635 4_4:+58770830 None:intergenic
AAGTGCGAGTCAAGCTCGCA+GGG 0.535151 4_4:-58770761 Msa0690860:CDS
AAACTCATTTGTACAAGAGT+GGG 0.538219 4_4:-58772449 Msa0690860:CDS
CTTGGGATCCTCGTGATCAT+GGG 0.539317 4_4:-58771788 Msa0690860:CDS
TAAAGGCTTCACCCTCCCAA+TGG 0.540341 4_4:+58771643 None:intergenic
AGGATGTAAGGGAATATTGG+TGG 0.540950 4_4:-58771904 Msa0690860:CDS
TGATTCTTGGCGGCGAGAAA+GGG 0.541669 4_4:+58774125 None:intergenic
GAAACTTGAATTGTGGAAAG+AGG 0.542708 4_4:-58771157 Msa0690860:CDS
TACGGTAATGACGACGGCGA+CGG 0.544466 4_4:+58769888 None:intergenic
AGTTCCTTCAGAAGAGGAGG+AGG 0.548548 4_4:-58772280 Msa0690860:CDS
TCACGTATGGTGATTCTTGG+CGG 0.550908 4_4:+58774115 None:intergenic
GGCGGAGCAGTCCACACCAC+AGG 0.552096 4_4:-58771576 Msa0690860:CDS
TATAACTTACCCTAGACCAC+AGG 0.552243 4_4:+58772137 None:intergenic
TATTTGGTCTGGACTGAGCA+TGG 0.553267 4_4:-58772414 Msa0690860:CDS
CGATGACGATTTGCCAGATG+GGG 0.554351 4_4:-58770062 Msa0690860:CDS
ACACACTTGCACATTGCACA+TGG 0.554386 4_4:+58772498 None:intergenic
CTCGGGAACCTTATAGTGGT+GGG 0.556218 4_4:-58771044 Msa0690860:CDS
TCTCGGGAACCTTATAGTGG+TGG 0.557452 4_4:-58771045 Msa0690860:CDS
GCTCTCAAAAGTGAGGAAGA+AGG 0.557493 4_4:-58771715 Msa0690860:CDS
CATTGATGCAGTCCGTAAAG+AGG 0.559031 4_4:-58770995 Msa0690860:CDS
TAATGCAGGCTCAAGAACTT+GGG 0.559518 4_4:-58771440 Msa0690860:intron
ATCGTAGTTGGATGTATGAT+AGG 0.563873 4_4:-58772632 Msa0690860:CDS
CGAAGACAATTTGTTAGATG+GGG 0.565203 4_4:-58770209 Msa0690860:CDS
GGGTCTTAATGCCCATTGGG+AGG 0.566029 4_4:-58771655 Msa0690860:CDS
GGCTGCCGCAGCACATCAGG+AGG 0.566647 4_4:-58770974 Msa0690860:CDS
GAGTCTCGGGAACCTTATAG+TGG 0.570097 4_4:-58771048 Msa0690860:CDS
CAAAGTTCCTTCAGAAGAGG+AGG 0.571808 4_4:-58772283 Msa0690860:CDS
GAATTGTGGAAAGAGGTTGC+TGG 0.573145 4_4:-58771150 Msa0690860:CDS
TACAGAGGATTCAGAAGAGG+AGG 0.573871 4_4:-58772223 Msa0690860:CDS
GGCAGCCACAGCACGCCAGG+AGG 0.574306 4_4:-58770932 Msa0690860:CDS
AATGGTAAGGCCTCCCAGAA+CGG 0.574382 4_4:-58771204 Msa0690860:CDS
GACGATGACGATTTGCCAGA+TGG 0.574633 4_4:-58770064 Msa0690860:CDS
TGATGAGGATTCACTAGATG+AGG 0.576767 4_4:-58770494 Msa0690860:CDS
AAGGACCCTGAAAGTGTGAC+TGG 0.578783 4_4:+58771951 None:intergenic
ATCAAAACCAAACTCAACTA+CGG 0.579654 4_4:+58769870 None:intergenic
CAAGCAGAATGCTGATGGGA+AGG 0.582859 4_4:-58772172 Msa0690860:CDS
GGTACAAACACAAAATGGTA+AGG 0.583099 4_4:-58771217 Msa0690860:CDS
CCGCAAGGCTCATGTTGATG+TGG 0.585666 4_4:-58771553 Msa0690860:CDS
TCCCAAAGTTCCTTCAGAAG+AGG 0.586542 4_4:-58772286 Msa0690860:CDS
AGCAGCCTCCTGATGTGCTG+CGG 0.589638 4_4:+58770969 None:intergenic
GAATCGGTGTCATCATAAAG+AGG 0.589843 4_4:+58769932 None:intergenic
TGAGACCCCAGAGGATGTAA+GGG 0.590171 4_4:-58771915 Msa0690860:CDS
AAAACAGTGTAGCGTCCAGT+TGG 0.590841 4_4:+58774188 None:intergenic
TCAAGAACTTGGGCGGTCTG+TGG 0.591187 4_4:-58771430 Msa0690860:CDS
GCCATCCAGTCACACTTTCA+GGG 0.595008 4_4:-58771956 Msa0690860:CDS
GGAGTTTATTAAGAAGGCCA+AGG 0.597232 4_4:-58772559 Msa0690860:CDS
TTGTAGGTGGGCTCCTAGCG+CGG 0.605332 4_4:-58772002 Msa0690860:intron
TATGGAGGTGCAGGAAGAGG+AGG 0.606341 4_4:-58772310 Msa0690860:CDS
AACATGAGCCTTGCGGCCTG+TGG 0.606679 4_4:+58771560 None:intergenic
ACAATATCACGATCGTCTGA+AGG 0.608845 4_4:-58771241 Msa0690860:CDS
TAGTCTCACCGCATTTCGCA+AGG 0.608914 4_4:-58774073 Msa0690860:intron
AGAGGAGGAGGAATCAGAAG+AGG 0.608992 4_4:-58772268 Msa0690860:CDS
AGTCCACACCACAGGCCGCA+AGG 0.611297 4_4:-58771568 Msa0690860:CDS
GGGCGACGAAACTTGAATTG+TGG 0.613873 4_4:-58771164 Msa0690860:CDS
ACATCCTCGCTACGATGATG+AGG 0.614505 4_4:-58770509 Msa0690860:CDS
ATATTGGTGGAAGTTGTTTG+GGG 0.616097 4_4:-58771891 Msa0690860:intron
TGTTGATGTGGCACTTAGCA+TGG 0.616336 4_4:-58771541 Msa0690860:intron
AGGATCAATCCACATAGGAA+AGG 0.616671 4_4:-58772612 Msa0690860:CDS
TAGCAGTAGACATATGGAGG+AGG 0.616879 4_4:-58772352 Msa0690860:CDS
ACATTATCACTATGATGATG+AGG 0.618914 4_4:-58770578 Msa0690860:CDS
TTACATATGTTGTTTGAGAG+CGG 0.620785 4_4:+58771349 None:intergenic
GGTCTTAATGCCCATTGGGA+GGG 0.621508 4_4:-58771654 Msa0690860:CDS
TCCCAAAACTCCTCATACAG+AGG 0.621524 4_4:-58772238 Msa0690860:CDS
CAGATATGCTCTCAAAAGTG+AGG 0.622705 4_4:-58771722 Msa0690860:CDS
ACCTCATTGGATATGTGAAG+AGG 0.624423 4_4:-58771685 Msa0690860:CDS
TCCTCGTCATTATCATGGTG+AGG 0.625583 4_4:+58770295 None:intergenic
GATGATGACGATTTGCCAGA+CGG 0.628419 4_4:-58770355 Msa0690860:CDS
GAATAGCAGTAGACATATGG+AGG 0.630715 4_4:-58772355 Msa0690860:CDS
TCCTCATCATTATCATAGTG+AGG 0.630997 4_4:+58770004 None:intergenic
TTGATATACCCATGATCACG+AGG 0.631630 4_4:+58771780 None:intergenic
TGATGAGGATTCGCTACATG+AGG 0.633190 4_4:-58769990 Msa0690860:CDS
GCCTCTTCACATATCCAATG+AGG 0.635189 4_4:+58771684 None:intergenic
TCATACAGAGGATTCAGAAG+AGG 0.636032 4_4:-58772226 Msa0690860:CDS
TCCCAAAACTCCACATATGG+AGG 0.637455 4_4:-58772325 Msa0690860:CDS
TGATCATGCTATGCATCTAG+AGG 0.639265 4_4:-58771019 Msa0690860:CDS
TCCCCATCATTATCATAGTG+AGG 0.639323 4_4:+58770151 None:intergenic
CAGACAAGCAGAATGCTGAT+GGG 0.640959 4_4:-58772176 Msa0690860:CDS
AAGAATCATCAAGCTGAAAG+GGG 0.641028 4_4:-58770106 Msa0690860:CDS
ATGATAGGATCAATCCACAT+AGG 0.644088 4_4:-58772617 Msa0690860:CDS
TGATGGGGATTCGTTACATG+AGG 0.644762 4_4:-58770137 Msa0690860:CDS
AAGCAACATCATGCTAAAAG+GGG 0.645171 4_4:-58770394 Msa0690860:CDS
ACAACATTATCAGCATTTGG+AGG 0.645179 4_4:-58770896 Msa0690860:CDS
AATACAGACCTTGCGAAATG+CGG 0.645988 4_4:+58774065 None:intergenic
AAGCATCATCAAGCTGAAAG+GGG 0.649585 4_4:-58770532 Msa0690860:CDS
ACCCTGAAAGTGTGACTGGA+TGG 0.650411 4_4:+58771955 None:intergenic
TCCTCACTATGATAATGATG+AGG 0.654946 4_4:-58770005 Msa0690860:CDS
CCACATCAACATGAGCCTTG+CGG 0.654991 4_4:+58771553 None:intergenic
CAAACTGGAAATAATTACCA+TGG 0.657081 4_4:+58769792 None:intergenic
AAAGTCTTTAACTCCAAGAG+AGG 0.657096 4_4:-58772475 Msa0690860:CDS
CTCAACTACGGTAATGACGA+CGG 0.657330 4_4:+58769882 None:intergenic
ATATGTGAAGAGGCTTGGAA+GGG 0.657558 4_4:-58771675 Msa0690860:CDS
TGCAGGCTCAAGAACTTGGG+CGG 0.659117 4_4:-58771437 Msa0690860:intron
ATAACTTACCCTAGACCACA+GGG 0.660044 4_4:+58772138 None:intergenic
TTGTGGAAAGAGGTTGCTGG+TGG 0.660274 4_4:-58771147 Msa0690860:CDS
AAGAATCATCAAGCTAAAAG+GGG 0.661347 4_4:-58769959 Msa0690860:CDS
AAGAATCATCAAGCTAAAAG+GGG 0.661347 4_4:-58770250 Msa0690860:CDS
TCGTCATCATCGTCATAGTG+AGG 0.664947 4_4:+58770367 None:intergenic
CTGGTGGAAAGAGTCGAGGT+CGG 0.666255 4_4:-58771131 Msa0690860:CDS
TCTCAAAAGTGAGGAAGAAG+GGG 0.667382 4_4:-58771713 Msa0690860:CDS
TGACGAGGATTCGCTACATG+AGG 0.668713 4_4:-58770281 Msa0690860:CDS
AAGCAGCGTCAAGCTAAAAG+GGG 0.671751 4_4:-58770463 Msa0690860:CDS
TTGTCTTCGTCATCATAGTG+AGG 0.672385 4_4:+58770223 None:intergenic
CGACGACGACTCTCTAGATG+AGG 0.674837 4_4:-58770425 Msa0690860:CDS
TCCTCACTATGATAATGATG+GGG 0.674907 4_4:-58770152 Msa0690860:CDS
GCGAAGTTACACCACGCCGG+AGG 0.675552 4_4:+58771079 None:intergenic
CTCCTGCATCCCGTTCTGGG+AGG 0.677042 4_4:+58771194 None:intergenic
CGGGATGCAGGAGATAGATG+GGG 0.677483 4_4:-58771184 Msa0690860:CDS
GTTGCTGGTGGAAAGAGTCG+AGG 0.681260 4_4:-58771135 Msa0690860:CDS
AATCGTAATTCGTGTAAAGG+CGG 0.682791 4_4:-58771594 Msa0690860:CDS
TCATCGTCATCATCATAGTG+AGG 0.683389 4_4:+58770079 None:intergenic
GAATGGTCATCATCATAGCG+AGG 0.683926 4_4:+58770733 None:intergenic
ATATCACGATCGTCTGAAGG+AGG 0.686760 4_4:-58771238 Msa0690860:CDS
TCCTCACCATGATAATGACG+AGG 0.694396 4_4:-58770296 Msa0690860:CDS
GAATCCTCATCATCGTAGCG+AGG 0.696997 4_4:+58770505 None:intergenic
AGTGCGAGTCAAGCTCGCAG+GGG 0.697262 4_4:-58770760 Msa0690860:CDS
TTTGCTTTAAACCTCCGGCG+TGG 0.698945 4_4:-58771090 Msa0690860:CDS
AAGGTTCTTATACGGCCCTG+TGG 0.700616 4_4:-58772153 Msa0690860:CDS
TGATGACGATTTGCCAGACG+GGG 0.703928 4_4:-58770353 Msa0690860:CDS
TGACACCGATTCACTAGACG+AGG 0.704444 4_4:-58769921 Msa0690860:CDS
AGTACAGTACGTCAACACAA+AGG 0.713056 4_4:+58769816 None:intergenic
AGTGTGAGTCAAGCTCGCAG+GGG 0.725594 4_4:-58770808 Msa0690860:CDS
ATATTCCCTTACATCCTCTG+GGG 0.728189 4_4:+58771910 None:intergenic
TCAGCGAAGTTACACCACGC+CGG 0.737989 4_4:+58771076 None:intergenic
TCGCTGGAGTGAGACCCCAG+AGG 0.762521 4_4:-58771924 Msa0690860:CDS
GTTGACGTACTGTACTACCA+TGG 0.762714 4_4:-58769809 Msa0690860:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATATAAAAAATATAA+GGG + chr4_4:58772666-58772685 None:intergenic 0.0%
!! TATATAATATAAAAAATATA+AGG + chr4_4:58772667-58772686 None:intergenic 0.0%
!!! CAAAATATAACTTTACTTTT+TGG - chr4_4:58770152-58770171 Msa0690860:CDS 15.0%
!! TATAAAATAGCAACAATCTA+CGG + chr4_4:58770396-58770415 None:intergenic 20.0%
!! TTCACCATAAAGATTTAATA+CGG + chr4_4:58770710-58770729 None:intergenic 20.0%
!!! TTCTACTTTGCATATTATTT+TGG + chr4_4:58770793-58770812 None:intergenic 20.0%
!!! TGTTAATATGACATGTTTTT+TGG - chr4_4:58770987-58771006 Msa0690860:CDS 20.0%
!! TTACAATTGTCTATAATACA+AGG - chr4_4:58771242-58771261 Msa0690860:CDS 20.0%
!! TACAATTGTCTATAATACAA+GGG - chr4_4:58771243-58771262 Msa0690860:CDS 20.0%
!!! GTTGTTTTTTAATTTAATGC+AGG - chr4_4:58772527-58772546 Msa0690860:CDS 20.0%
!!! TGATATTGTTTCTAGAAAAA+AGG + chr4_4:58772729-58772748 None:intergenic 20.0%
!! CTTGTGGTTTATATTTAAAT+CGG - chr4_4:58774214-58774233 Msa0690860:five_prime_UTR 20.0%
! ATTACTTTACTTATCAAACC+AGG - chr4_4:58769936-58769955 Msa0690860:CDS 25.0%
! TTACTTTACTTATCAAACCA+GGG - chr4_4:58769937-58769956 Msa0690860:CDS 25.0%
!! ATTTTTACTCCGTAAATCAA+TGG - chr4_4:58769987-58770006 Msa0690860:CDS 25.0%
! AATCAAGAAACATAGTTCAT+AGG + chr4_4:58770271-58770290 None:intergenic 25.0%
! TTTGGTAAAGTGACTTATAT+TGG - chr4_4:58770300-58770319 Msa0690860:CDS 25.0%
! TTGGTAAAGTGACTTATATT+GGG - chr4_4:58770301-58770320 Msa0690860:CDS 25.0%
! TTAAAAGAACAACAGATGAT+TGG - chr4_4:58770445-58770464 Msa0690860:CDS 25.0%
! AATCTAGATTGATTGACAAA+GGG - chr4_4:58770563-58770582 Msa0690860:CDS 25.0%
! CTATGCTTTACAATATGATT+TGG + chr4_4:58770632-58770651 None:intergenic 25.0%
! ATCCTATAGTTAGTTAACAT+AGG - chr4_4:58770661-58770680 Msa0690860:CDS 25.0%
! ATCCTATGTTAACTAACTAT+AGG + chr4_4:58770666-58770685 None:intergenic 25.0%
! CTTTATGGTGAAATTTAACT+TGG - chr4_4:58770718-58770737 Msa0690860:CDS 25.0%
! TTTCTTAAATGAAAGCAAGT+AGG - chr4_4:58770757-58770776 Msa0690860:CDS 25.0%
!! AATGTAATGTTGTTTGTAAG+TGG - chr4_4:58771010-58771029 Msa0690860:CDS 25.0%
! ACAATTGTCTATAATACAAG+GGG - chr4_4:58771244-58771263 Msa0690860:CDS 25.0%
! ATATAAGTATTAGCCACTTA+GGG + chr4_4:58771309-58771328 None:intergenic 25.0%
! TATATAAGTATTAGCCACTT+AGG + chr4_4:58771310-58771329 None:intergenic 25.0%
! TTGAGCAAAATATTTGTCTA+GGG - chr4_4:58771595-58771614 Msa0690860:CDS 25.0%
!!! ATTTAGTTTGGACTTTTTGT+AGG - chr4_4:58771963-58771982 Msa0690860:CDS 25.0%
! TAACTAGTTATCGTTATGTA+GGG + chr4_4:58772149-58772168 None:intergenic 25.0%
!!! ACTAGTTAGATTCCTTTTTT+AGG - chr4_4:58772161-58772180 Msa0690860:CDS 25.0%
! AAACAACATATGTAAGTTGT+TGG - chr4_4:58772640-58772659 Msa0690860:exon 25.0%
! CTCTTGAACAAAATGATATT+AGG - chr4_4:58772695-58772714 Msa0690860:intron 25.0%
! AAAGAATCATCAAGCTAAAA+GGG - chr4_4:58773730-58773749 Msa0690860:intron 25.0%
! AAAGAATCATCAAGCTAAAA+GGG - chr4_4:58773730-58773749 Msa0690860:intron 25.0%
!! GAAGAGAAACCATTGATTTA+CGG + chr4_4:58769999-58770018 None:intergenic 30.0%
AATAAGGTTAGAAGATTCTC+AGG + chr4_4:58770021-58770040 None:intergenic 30.0%
!! TAAACTTTCACTTTTAGCAG+AGG - chr4_4:58770112-58770131 Msa0690860:CDS 30.0%
!! AAACTTTCACTTTTAGCAGA+GGG - chr4_4:58770113-58770132 Msa0690860:CDS 30.0%
!! TTCTTGATTTGTGTGTCATT+TGG - chr4_4:58770282-58770301 Msa0690860:CDS 30.0%
TGGTAAAGTGACTTATATTG+GGG - chr4_4:58770302-58770321 Msa0690860:CDS 30.0%
!!! ATTGAGTTGATTGCATTTTC+CGG - chr4_4:58770362-58770381 Msa0690860:CDS 30.0%
ATATAGCAATGAAAACAGTG+AGG + chr4_4:58770488-58770507 None:intergenic 30.0%
CAATCTAGATTGATTGACAA+AGG - chr4_4:58770562-58770581 Msa0690860:CDS 30.0%
ATCTAGATTGATTGACAAAG+GGG - chr4_4:58770564-58770583 Msa0690860:CDS 30.0%
CCATAAAGATTTAATACGGT+CGG + chr4_4:58770706-58770725 None:intergenic 30.0%
!! ATGGTGAAATTTAACTTGGT+AGG - chr4_4:58770722-58770741 Msa0690860:CDS 30.0%
TAAAGCCACATGGTATAATA+GGG + chr4_4:58770836-58770855 None:intergenic 30.0%
! ATTTTATCGAAAAGCCAGTA+AGG + chr4_4:58770891-58770910 None:intergenic 30.0%
GAGTAAAGTAAAGCTCAATA+AGG - chr4_4:58771034-58771053 Msa0690860:CDS 30.0%
AACATATTGGATCTTAGACA+GGG + chr4_4:58771154-58771173 None:intergenic 30.0%
TAACATATTGGATCTTAGAC+AGG + chr4_4:58771155-58771174 None:intergenic 30.0%
!!! CGAAATTTTTAAAGTGTGAG+CGG - chr4_4:58771281-58771300 Msa0690860:intron 30.0%
TATACCCAATATGCAGATAA+TGG - chr4_4:58771326-58771345 Msa0690860:intron 30.0%
!! TTGAACTATGAGTTTGTTAG+TGG - chr4_4:58771393-58771412 Msa0690860:CDS 30.0%
AGTTCAGGAGTTTATTAAGA+AGG - chr4_4:58771416-58771435 Msa0690860:CDS 30.0%
AAAACTCATTTGTACAAGAG+TGG - chr4_4:58771531-58771550 Msa0690860:intron 30.0%
AAACTCATTTGTACAAGAGT+GGG - chr4_4:58771532-58771551 Msa0690860:intron 30.0%
TGGGTTTCAACTAAACTATT+TGG - chr4_4:58771551-58771570 Msa0690860:CDS 30.0%
TTCAACTAAACTATTTGGTC+TGG - chr4_4:58771556-58771575 Msa0690860:CDS 30.0%
CTTGAGCAAAATATTTGTCT+AGG - chr4_4:58771594-58771613 Msa0690860:CDS 30.0%
! TTGATGGTTGACATTTAGTT+TGG - chr4_4:58771951-58771970 Msa0690860:CDS 30.0%
AATATTGGTGGAAGTTGTTT+GGG - chr4_4:58772089-58772108 Msa0690860:intron 30.0%
AACTAGTTATCGTTATGTAG+GGG + chr4_4:58772148-58772167 None:intergenic 30.0%
CTAACTAGTTATCGTTATGT+AGG + chr4_4:58772150-58772169 None:intergenic 30.0%
AAGCAATCTTGTCCTAAAAA+AGG + chr4_4:58772176-58772195 None:intergenic 30.0%
!!! TTTTTTAGGACAAGATTGCT+TGG - chr4_4:58772175-58772194 Msa0690860:CDS 30.0%
!!! TTTTTAGGACAAGATTGCTT+GGG - chr4_4:58772176-58772195 Msa0690860:CDS 30.0%
AAAAAGACGTTTCAAACAAG+AGG - chr4_4:58772222-58772241 Msa0690860:CDS 30.0%
TTGGCTAGAGATCTTTATAA+AGG + chr4_4:58772358-58772377 None:intergenic 30.0%
AAAGATCTCTAGCCAAAATA+AGG - chr4_4:58772362-58772381 Msa0690860:CDS 30.0%
!!! AATTACGATTGGCCTTATTT+TGG + chr4_4:58772377-58772396 None:intergenic 30.0%
! TTACATATGTTGTTTGAGAG+CGG + chr4_4:58772635-58772654 None:intergenic 30.0%
GAAACAACATTATCAGCATT+TGG - chr4_4:58773082-58773101 Msa0690860:intron 30.0%
! ACATTATCACTATGATGATG+AGG - chr4_4:58773403-58773422 Msa0690860:intron 30.0%
AAAGCAACATCATGCTAAAA+GGG - chr4_4:58773586-58773605 Msa0690860:intron 30.0%
!!! CTTTTAGCTTGATGATTCTT+TGG + chr4_4:58773731-58773750 None:intergenic 30.0%
CAAAGAATCATCAAGCTAAA+AGG - chr4_4:58773729-58773748 Msa0690860:intron 30.0%
AAGAATCATCAAGCTAAAAG+GGG - chr4_4:58773731-58773750 Msa0690860:intron 30.0%
!! ACGAAGACAATTTGTTAGAT+GGG - chr4_4:58773771-58773790 Msa0690860:intron 30.0%
! ATCCTCACTATGATAATGAT+GGG - chr4_4:58773828-58773847 Msa0690860:intron 30.0%
AAAGAATCATCAAGCTGAAA+GGG - chr4_4:58773874-58773893 Msa0690860:intron 30.0%
!!! CTTTTAGCTTGATGATTCTT+TGG + chr4_4:58773731-58773750 None:intergenic 30.0%
CAAAGAATCATCAAGCTAAA+AGG - chr4_4:58773729-58773748 Msa0690860:intron 30.0%
AAGAATCATCAAGCTAAAAG+GGG - chr4_4:58773731-58773750 Msa0690860:intron 30.0%
ATCAAAACCAAACTCAACTA+CGG + chr4_4:58774114-58774133 None:intergenic 30.0%
CAAACTGGAAATAATTACCA+TGG + chr4_4:58774192-58774211 None:intergenic 30.0%
TTATTTCCAGTTTGAACTTG+TGG - chr4_4:58774198-58774217 Msa0690860:five_prime_UTR 30.0%
TATAAACCACAAGTTCAAAC+TGG + chr4_4:58774207-58774226 None:intergenic 30.0%
!! GTTCTAGGGTTCTTCAATTT+AGG - chr4_4:58769964-58769983 Msa0690860:CDS 35.0%
!! ACTTTAGGGTTTGACTTTCA+CGG + chr4_4:58770058-58770077 None:intergenic 35.0%
GAAACATAGTTCATAGGAAC+AGG + chr4_4:58770265-58770284 None:intergenic 35.0%
ACAATCTACGGTATTAGTAC+CGG + chr4_4:58770384-58770403 None:intergenic 35.0%
TAACATAGGATTACCCGATT+AGG - chr4_4:58770675-58770694 Msa0690860:CDS 35.0%
CCGACCGTATTAAATCTTTA+TGG - chr4_4:58770703-58770722 Msa0690860:CDS 35.0%
ATAACCCCTATTATACCATG+TGG - chr4_4:58770828-58770847 Msa0690860:CDS 35.0%
AAAGCCACATGGTATAATAG+GGG + chr4_4:58770835-58770854 None:intergenic 35.0%
CTAAAGCCACATGGTATAAT+AGG + chr4_4:58770837-58770856 None:intergenic 35.0%
!!! GATGTAGTTTTGTTCCTTAC+TGG - chr4_4:58770874-58770893 Msa0690860:CDS 35.0%
TAGCTTACATTAAGAGTTCG+AGG - chr4_4:58770941-58770960 Msa0690860:CDS 35.0%
AGTAAAGCTCAATAAGGCAT+TGG - chr4_4:58771040-58771059 Msa0690860:CDS 35.0%
!! GTGATTGATGTCTTGTTTGT+TGG - chr4_4:58771101-58771120 Msa0690860:CDS 35.0%
!! ATTGATGTCTTGTTTGTTGG+TGG - chr4_4:58771104-58771123 Msa0690860:CDS 35.0%
CGATCCATTATCTGCATATT+GGG + chr4_4:58771333-58771352 None:intergenic 35.0%
ACGATCCATTATCTGCATAT+TGG + chr4_4:58771334-58771353 None:intergenic 35.0%
ATCGTAGTTGGATGTATGAT+AGG - chr4_4:58771349-58771368 Msa0690860:intron 35.0%
ATGATAGGATCAATCCACAT+AGG - chr4_4:58771364-58771383 Msa0690860:CDS 35.0%
TTTCTCTCAGACAAAAAGCA+GGG + chr4_4:58771453-58771472 None:intergenic 35.0%
AAAGTCTTTAACTCCAAGAG+AGG - chr4_4:58771506-58771525 Msa0690860:intron 35.0%
! AAATGAGTTTTCACCTCTCT+TGG + chr4_4:58771522-58771541 None:intergenic 35.0%
ATCGAATAGCAGTAGACATA+TGG - chr4_4:58771623-58771642 Msa0690860:CDS 35.0%
!! TCTGAAACTTGGAGAGTTTT+GGG + chr4_4:58771789-58771808 None:intergenic 35.0%
! TAGTTTGGACTTTTTGTAGG+TGG - chr4_4:58771966-58771985 Msa0690860:CDS 35.0%
! AGTTTGGACTTTTTGTAGGT+GGG - chr4_4:58771967-58771986 Msa0690860:CDS 35.0%
AATATTCCCTTACATCCTCT+GGG + chr4_4:58772075-58772094 None:intergenic 35.0%
GAATATTGGTGGAAGTTGTT+TGG - chr4_4:58772088-58772107 Msa0690860:intron 35.0%
ATATTGGTGGAAGTTGTTTG+GGG - chr4_4:58772090-58772109 Msa0690860:intron 35.0%
!! CTTTTGAGAGCATATCTGAA+AGG + chr4_4:58772257-58772276 None:intergenic 35.0%
AATCGTAATTCGTGTAAAGG+CGG - chr4_4:58772387-58772406 Msa0690860:CDS 35.0%
!! TCTTTTTAGCCACCCATAAA+AGG - chr4_4:58772586-58772605 Msa0690860:CDS 35.0%
! ATTGCCAGACTTCCTTTTAT+GGG + chr4_4:58772601-58772620 None:intergenic 35.0%
! AATTGCCAGACTTCCTTTTA+TGG + chr4_4:58772602-58772621 None:intergenic 35.0%
ATAAAAGGAAGTCTGGCAAT+TGG - chr4_4:58772601-58772620 Msa0690860:CDS 35.0%
TAAAAGGAAGTCTGGCAATT+GGG - chr4_4:58772602-58772621 Msa0690860:CDS 35.0%
! AAGGAGGTACAAACACAAAA+TGG - chr4_4:58772759-58772778 Msa0690860:intron 35.0%
GGTACAAACACAAAATGGTA+AGG - chr4_4:58772764-58772783 Msa0690860:intron 35.0%
GAAACTTGAATTGTGGAAAG+AGG - chr4_4:58772824-58772843 Msa0690860:intron 35.0%
ACAACATTATCAGCATTTGG+AGG - chr4_4:58773085-58773104 Msa0690860:intron 35.0%
CTAGATGTTTCTTTCTTCGA+CGG + chr4_4:58773295-58773314 None:intergenic 35.0%
!! GAAAGAAACATCTAGCTCTA+AGG - chr4_4:58773300-58773319 Msa0690860:intron 35.0%
! TCTTGTGAGCTTGATGTTTT+TGG + chr4_4:58773382-58773401 None:intergenic 35.0%
! AAAGCATCATCAAGCTGAAA+GGG - chr4_4:58773448-58773467 Msa0690860:intron 35.0%
!! CTTTTAGCATGATGTTGCTT+TGG + chr4_4:58773587-58773606 None:intergenic 35.0%
CAAAGCAACATCATGCTAAA+AGG - chr4_4:58773585-58773604 Msa0690860:intron 35.0%
AAGCAACATCATGCTAAAAG+GGG - chr4_4:58773587-58773606 Msa0690860:intron 35.0%
!!! TTTTTAGCTTGTCGTTGCTT+TGG + chr4_4:58773659-58773678 None:intergenic 35.0%
!! GACGAAGACAATTTGTTAGA+TGG - chr4_4:58773770-58773789 Msa0690860:intron 35.0%
!! CGAAGACAATTTGTTAGATG+GGG - chr4_4:58773772-58773791 Msa0690860:intron 35.0%
!!! TTTTTAGCTTGAGGTTGCTT+TGG + chr4_4:58773803-58773822 None:intergenic 35.0%
! CATCCTCACTATGATAATGA+TGG - chr4_4:58773827-58773846 Msa0690860:intron 35.0%
! TCCTCACTATGATAATGATG+GGG - chr4_4:58773829-58773848 Msa0690860:intron 35.0%
! CTTTCAGCTTGATGATTCTT+TGG + chr4_4:58773875-58773894 None:intergenic 35.0%
CAAAGAATCATCAAGCTGAA+AGG - chr4_4:58773873-58773892 Msa0690860:intron 35.0%
AAGAATCATCAAGCTGAAAG+GGG - chr4_4:58773875-58773894 Msa0690860:intron 35.0%
!!! TTTTTAGCTTGACGTTGCTT+TGG + chr4_4:58773950-58773969 None:intergenic 35.0%
! TCCTCACTATGATAATGATG+AGG - chr4_4:58773829-58773848 Msa0690860:intron 35.0%
TCCTCATCATTATCATAGTG+AGG + chr4_4:58773980-58773999 None:intergenic 35.0%
AATACAGACCTTGCGAAATG+CGG + chr4_4:58769919-58769938 None:intergenic 40.0%
TCAAACCAGGGTTAAGTTCT+AGG - chr4_4:58769949-58769968 Msa0690860:CDS 40.0%
CAAACCAGGGTTAAGTTCTA+GGG - chr4_4:58769950-58769969 Msa0690860:CDS 40.0%
! GGCTCAGTGGTTAGTTAATA+AGG + chr4_4:58770037-58770056 None:intergenic 40.0%
GACACAGCAATGATCAAGTA+AGG + chr4_4:58770185-58770204 None:intergenic 40.0%
TACGGTCGGAAAAACCTAAT+CGG + chr4_4:58770692-58770711 None:intergenic 40.0%
! CTTGAATGTCTAAAGCCACA+TGG + chr4_4:58770846-58770865 None:intergenic 40.0%
TTGTTTGTGACTTGACTCTG+TGG - chr4_4:58770912-58770931 Msa0690860:CDS 40.0%
! TTAGCTGCGTGCTGATAATT+CGG - chr4_4:58771172-58771191 Msa0690860:CDS 40.0%
!! TGCAGATAATGGATCGTAGT+TGG - chr4_4:58771337-58771356 Msa0690860:intron 40.0%
AGGATCAATCCACATAGGAA+AGG - chr4_4:58771369-58771388 Msa0690860:CDS 40.0%
TAGTTCAAGCCTTTCCTATG+TGG + chr4_4:58771381-58771400 None:intergenic 40.0%
!! TGAGTTTGTTAGTGGAGTTC+AGG - chr4_4:58771401-58771420 Msa0690860:CDS 40.0%
GGAGTTTATTAAGAAGGCCA+AGG - chr4_4:58771422-58771441 Msa0690860:CDS 40.0%
CTTTCTCTCAGACAAAAAGC+AGG + chr4_4:58771454-58771473 None:intergenic 40.0%
GAATAGCAGTAGACATATGG+AGG - chr4_4:58771626-58771645 Msa0690860:CDS 40.0%
! ACCTCCATATGTGGAGTTTT+GGG + chr4_4:58771660-58771679 None:intergenic 40.0%
! TCCTCTTCTGAAGGAACTTT+GGG + chr4_4:58771699-58771718 None:intergenic 40.0%
! TCCTCTGTATGAGGAGTTTT+GGG + chr4_4:58771747-58771766 None:intergenic 40.0%
! ATCCTCTGTATGAGGAGTTT+TGG + chr4_4:58771748-58771767 None:intergenic 40.0%
TCTTCTGAATCCTCTGTATG+AGG + chr4_4:58771756-58771775 None:intergenic 40.0%
TCATACAGAGGATTCAGAAG+AGG - chr4_4:58771755-58771774 Msa0690860:CDS 40.0%
!! GTCTGAAACTTGGAGAGTTT+TGG + chr4_4:58771790-58771809 None:intergenic 40.0%
! CATTCTGCTTGTCTGAAACT+TGG + chr4_4:58771800-58771819 None:intergenic 40.0%
CTGATGGGAAGGTTCTTATA+CGG - chr4_4:58771820-58771839 Msa0690860:intron 40.0%
ATAACTTACCCTAGACCACA+GGG + chr4_4:58771846-58771865 None:intergenic 40.0%
TATAACTTACCCTAGACCAC+AGG + chr4_4:58771847-58771866 None:intergenic 40.0%
ATATTCCCTTACATCCTCTG+GGG + chr4_4:58772074-58772093 None:intergenic 40.0%
CAATATTCCCTTACATCCTC+TGG + chr4_4:58772076-58772095 None:intergenic 40.0%
CAGAGGATGTAAGGGAATAT+TGG - chr4_4:58772074-58772093 Msa0690860:intron 40.0%
AGGATGTAAGGGAATATTGG+TGG - chr4_4:58772077-58772096 Msa0690860:intron 40.0%
TTGATATACCCATGATCACG+AGG + chr4_4:58772204-58772223 None:intergenic 40.0%
CAGATATGCTCTCAAAAGTG+AGG - chr4_4:58772259-58772278 Msa0690860:CDS 40.0%
CTCTCAAAAGTGAGGAAGAA+GGG - chr4_4:58772267-58772286 Msa0690860:CDS 40.0%
TCTCAAAAGTGAGGAAGAAG+GGG - chr4_4:58772268-58772287 Msa0690860:CDS 40.0%
ACCTCATTGGATATGTGAAG+AGG - chr4_4:58772296-58772315 Msa0690860:CDS 40.0%
ATTGGATATGTGAAGAGGCT+TGG - chr4_4:58772301-58772320 Msa0690860:CDS 40.0%
ATATGTGAAGAGGCTTGGAA+GGG - chr4_4:58772306-58772325 Msa0690860:CDS 40.0%
GCCAATCGTAATTCGTGTAA+AGG - chr4_4:58772384-58772403 Msa0690860:CDS 40.0%
GCCTTTACACGAATTACGAT+TGG + chr4_4:58772388-58772407 None:intergenic 40.0%
TTAATGCAGGCTCAAGAACT+TGG - chr4_4:58772540-58772559 Msa0690860:CDS 40.0%
TAATGCAGGCTCAAGAACTT+GGG - chr4_4:58772541-58772560 Msa0690860:CDS 40.0%
ACAATATCACGATCGTCTGA+AGG - chr4_4:58772740-58772759 Msa0690860:intron 40.0%
! CAGACTTTGCTTTAAACCTC+CGG - chr4_4:58772886-58772905 Msa0690860:intron 40.0%
TGATCATGCTATGCATCTAG+AGG - chr4_4:58772962-58772981 Msa0690860:intron 40.0%
CTAAGAACTCGTCTAGTGAA+TGG + chr4_4:58773268-58773287 None:intergenic 40.0%
!! CTTTCAGCTTGATGATGCTT+TGG + chr4_4:58773449-58773468 None:intergenic 40.0%
! CAAAGCATCATCAAGCTGAA+AGG - chr4_4:58773447-58773466 Msa0690860:intron 40.0%
AAGCATCATCAAGCTGAAAG+GGG - chr4_4:58773449-58773468 Msa0690860:intron 40.0%
TGATGAGGATTCACTAGATG+AGG - chr4_4:58773487-58773506 Msa0690860:intron 40.0%
AAAGCAGCGTCAAGCTAAAA+GGG - chr4_4:58773517-58773536 Msa0690860:intron 40.0%
AGCAACGACAAGCTAAAAAG+CGG - chr4_4:58773660-58773679 Msa0690860:intron 40.0%
TTGTCTTCGTCATCATAGTG+AGG + chr4_4:58773761-58773780 None:intergenic 40.0%
TCCCCATCATTATCATAGTG+AGG + chr4_4:58773833-58773852 None:intergenic 40.0%
TCATCGTCATCATCATAGTG+AGG + chr4_4:58773905-58773924 None:intergenic 40.0%
!! GAATCGGTGTCATCATAAAG+AGG + chr4_4:58774052-58774071 None:intergenic 40.0%
TAAGACCTCGTCTAGTGAAT+CGG + chr4_4:58774068-58774087 None:intergenic 40.0%
GTCATTACCGTAGTTGAGTT+TGG - chr4_4:58774104-58774123 Msa0690860:five_prime_UTR 40.0%
AGTACAGTACGTCAACACAA+AGG + chr4_4:58774168-58774187 None:intergenic 40.0%
GAAATTTAGCGCGATCCAAC+TGG - chr4_4:58769778-58769797 Msa0690860:three_prime_UTR 45.0%
AAAACAGTGTAGCGTCCAGT+TGG + chr4_4:58769796-58769815 None:intergenic 45.0%
ATGGGAGATGCAGAGAGATA+GGG + chr4_4:58769831-58769850 None:intergenic 45.0%
AATGGGAGATGCAGAGAGAT+AGG + chr4_4:58769832-58769851 None:intergenic 45.0%
TCACGTATGGTGATTCTTGG+CGG + chr4_4:58769869-58769888 None:intergenic 45.0%
GCTTCACGTATGGTGATTCT+TGG + chr4_4:58769872-58769891 None:intergenic 45.0%
AGAACCCTAGAACTTAACCC+TGG + chr4_4:58769957-58769976 None:intergenic 45.0%
! GTGTCGTTAGTTCTTTGTGC+TGG - chr4_4:58770200-58770219 Msa0690860:CDS 45.0%
AGAATTAGCCCCTATGTTCG+AGG - chr4_4:58770336-58770355 Msa0690860:CDS 45.0%
TCAATGCACCTCGAACATAG+GGG + chr4_4:58770347-58770366 None:intergenic 45.0%
CTCAATGCACCTCGAACATA+GGG + chr4_4:58770348-58770367 None:intergenic 45.0%
ACTCAATGCACCTCGAACAT+AGG + chr4_4:58770349-58770368 None:intergenic 45.0%
ACGGTCGGAAAAACCTAATC+GGG + chr4_4:58770691-58770710 None:intergenic 45.0%
GTGGAGAGTTGAGCTTAGTA+GGG - chr4_4:58771123-58771142 Msa0690860:CDS 45.0%
TCAGCACGCAGCTAACATAT+TGG + chr4_4:58771167-58771186 None:intergenic 45.0%
CAAAAAGCAGGGTTGTTCCT+TGG + chr4_4:58771442-58771461 None:intergenic 45.0%
ACACACTTGCACATTGCACA+TGG + chr4_4:58771486-58771505 None:intergenic 45.0%
TATTTGGTCTGGACTGAGCA+TGG - chr4_4:58771567-58771586 Msa0690860:CDS 45.0%
TAGCAGTAGACATATGGAGG+AGG - chr4_4:58771629-58771648 Msa0690860:CDS 45.0%
GGATCCCAAAACTCCACATA+TGG - chr4_4:58771653-58771672 Msa0690860:CDS 45.0%
TCCCAAAACTCCACATATGG+AGG - chr4_4:58771656-58771675 Msa0690860:CDS 45.0%
! CACCTCCATATGTGGAGTTT+TGG + chr4_4:58771661-58771680 None:intergenic 45.0%
TCCCAAAGTTCCTTCAGAAG+AGG - chr4_4:58771695-58771714 Msa0690860:CDS 45.0%
! CTCCTCTTCTGAAGGAACTT+TGG + chr4_4:58771700-58771719 None:intergenic 45.0%
CAAAGTTCCTTCAGAAGAGG+AGG - chr4_4:58771698-58771717 Msa0690860:CDS 45.0%
TCCCAAAACTCCTCATACAG+AGG - chr4_4:58771743-58771762 Msa0690860:CDS 45.0%
TACAGAGGATTCAGAAGAGG+AGG - chr4_4:58771758-58771777 Msa0690860:CDS 45.0%
TCAGACAAGCAGAATGCTGA+TGG - chr4_4:58771804-58771823 Msa0690860:intron 45.0%
CAGACAAGCAGAATGCTGAT+GGG - chr4_4:58771805-58771824 Msa0690860:intron 45.0%
TGTGTGTGTGTGTGTGTTGA+TGG - chr4_4:58771935-58771954 Msa0690860:CDS 45.0%
GCTCTCAAAAGTGAGGAAGA+AGG - chr4_4:58772266-58772285 Msa0690860:CDS 45.0%
GCCTCTTCACATATCCAATG+AGG + chr4_4:58772300-58772319 None:intergenic 45.0%
GATATGTGAAGAGGCTTGGA+AGG - chr4_4:58772305-58772324 Msa0690860:CDS 45.0%
GAAGGGTCTTAATGCCCATT+GGG - chr4_4:58772323-58772342 Msa0690860:CDS 45.0%
TGTTGATGTGGCACTTAGCA+TGG - chr4_4:58772440-58772459 Msa0690860:CDS 45.0%
GTGGCTAAAAAGAGCTCATC+GGG + chr4_4:58772579-58772598 None:intergenic 45.0%
GGTGGCTAAAAAGAGCTCAT+CGG + chr4_4:58772580-58772599 None:intergenic 45.0%
ATATCACGATCGTCTGAAGG+AGG - chr4_4:58772743-58772762 Msa0690860:intron 45.0%
GAATTGTGGAAAGAGGTTGC+TGG - chr4_4:58772831-58772850 Msa0690860:intron 45.0%
TGATCACACCCACCACTATA+AGG + chr4_4:58772948-58772967 None:intergenic 45.0%
! CTCTTTACGGACTGCATCAA+TGG + chr4_4:58772988-58773007 None:intergenic 45.0%
CATTGATGCAGTCCGTAAAG+AGG - chr4_4:58772986-58773005 Msa0690860:intron 45.0%
!! TTGTGAAAGCACCTGCTGAT+TGG + chr4_4:58773154-58773173 None:intergenic 45.0%
!! TTGTGAAAGCACCTGCTGAT+TGG + chr4_4:58773154-58773173 None:intergenic 45.0%
GAATGGTCATCATCATAGCG+AGG + chr4_4:58773251-58773270 None:intergenic 45.0%
!!! GATGTTTTTGGCGACGGTTT+GGG + chr4_4:58773370-58773389 None:intergenic 45.0%
!!! TGATGTTTTTGGCGACGGTT+TGG + chr4_4:58773371-58773390 None:intergenic 45.0%
!!! GAGCTTGATGTTTTTGGCGA+CGG + chr4_4:58773376-58773395 None:intergenic 45.0%
! CTATGATGATGAGGATTCGC+TGG - chr4_4:58773412-58773431 Msa0690860:intron 45.0%
!!! CTTTTAGCTTGACGCTGCTT+TGG + chr4_4:58773518-58773537 None:intergenic 45.0%
CAAAGCAGCGTCAAGCTAAA+AGG - chr4_4:58773516-58773535 Msa0690860:intron 45.0%
AAGCAGCGTCAAGCTAAAAG+GGG - chr4_4:58773518-58773537 Msa0690860:intron 45.0%
TCGTCATCATCGTCATAGTG+AGG + chr4_4:58773617-58773636 None:intergenic 45.0%
! GATGATGACGATTTGCCAGA+CGG - chr4_4:58773626-58773645 Msa0690860:intron 45.0%
! ATGATGACGATTTGCCAGAC+GGG - chr4_4:58773627-58773646 Msa0690860:intron 45.0%
! TCCTCACCATGATAATGACG+AGG - chr4_4:58773685-58773704 Msa0690860:intron 45.0%
TCCTCGTCATTATCATGGTG+AGG + chr4_4:58773689-58773708 None:intergenic 45.0%
GCGAATCCTCGTCATTATCA+TGG + chr4_4:58773694-58773713 None:intergenic 45.0%
!!! GGATGTCGCTTTTTAGCTTG+AGG + chr4_4:58773812-58773831 None:intergenic 45.0%
TGATGGGGATTCGTTACATG+AGG - chr4_4:58773844-58773863 Msa0690860:intron 45.0%
ACGATGACGATTTGCCAGAT+GGG - chr4_4:58773918-58773937 Msa0690860:intron 45.0%
TGCTTTGGTAAAACCCCATC+TGG + chr4_4:58773788-58773807 None:intergenic 45.0%
TGATGAGGATTCGCTACATG+AGG - chr4_4:58773991-58774010 Msa0690860:intron 45.0%
CTCAACTACGGTAATGACGA+CGG + chr4_4:58774102-58774121 None:intergenic 45.0%
GTTGACGTACTGTACTACCA+TGG - chr4_4:58774172-58774191 Msa0690860:five_prime_UTR 45.0%
!! AAAAAAAAAAAAAAACTTTA+GGG + chr4_4:58770072-58770091 None:intergenic 5.0%
!! TAAAAAAAAAAAAAAACTTT+AGG + chr4_4:58770073-58770092 None:intergenic 5.0%
CGGCGAGAAAGGGATAGAAT+GGG + chr4_4:58769849-58769868 None:intergenic 50.0%
TGATTCTTGGCGGCGAGAAA+GGG + chr4_4:58769859-58769878 None:intergenic 50.0%
CTCTCTAGCAGCTTCACGTA+TGG + chr4_4:58769882-58769901 None:intergenic 50.0%
TAGTCTCACCGCATTTCGCA+AGG - chr4_4:58769908-58769927 Msa0690860:CDS 50.0%
! GTTTGACTTTCACGGCTCAG+TGG + chr4_4:58770050-58770069 None:intergenic 50.0%
GGTGGAGAGTTGAGCTTAGT+AGG - chr4_4:58771122-58771141 Msa0690860:CDS 50.0%
CAGTAGACATATGGAGGAGG+AGG - chr4_4:58771632-58771651 Msa0690860:CDS 50.0%
! AACTCCACATATGGAGGTGC+AGG - chr4_4:58771662-58771681 Msa0690860:CDS 50.0%
TCTTCCTGCACCTCCATATG+TGG + chr4_4:58771669-58771688 None:intergenic 50.0%
! ACATATGGAGGTGCAGGAAG+AGG - chr4_4:58771668-58771687 Msa0690860:CDS 50.0%
AGTTCCTTCAGAAGAGGAGG+AGG - chr4_4:58771701-58771720 Msa0690860:CDS 50.0%
GATTCCTCCTCCTCTTCTGA+AGG + chr4_4:58771708-58771727 None:intergenic 50.0%
AGAGGAGGAGGAATCAGAAG+AGG - chr4_4:58771713-58771732 Msa0690860:CDS 50.0%
AGAGGATTCAGAAGAGGAGG+AGG - chr4_4:58771761-58771780 Msa0690860:CDS 50.0%
CAAGCAGAATGCTGATGGGA+AGG - chr4_4:58771809-58771828 Msa0690860:intron 50.0%
AAGGTTCTTATACGGCCCTG+TGG - chr4_4:58771828-58771847 Msa0690860:intron 50.0%
TTATACGGCCCTGTGGTCTA+GGG - chr4_4:58771835-58771854 Msa0690860:intron 50.0%
GCCATCCAGTCACACTTTCA+GGG - chr4_4:58772025-58772044 Msa0690860:intron 50.0%
! ACCCTGAAAGTGTGACTGGA+TGG + chr4_4:58772029-58772048 None:intergenic 50.0%
! AAGGACCCTGAAAGTGTGAC+TGG + chr4_4:58772033-58772052 None:intergenic 50.0%
TTCAGGGTCCTTTCTATCGC+TGG - chr4_4:58772041-58772060 Msa0690860:intron 50.0%
GTCTCACTCCAGCGATAGAA+AGG + chr4_4:58772052-58772071 None:intergenic 50.0%
TGAGACCCCAGAGGATGTAA+GGG - chr4_4:58772066-58772085 Msa0690860:intron 50.0%
CTTGGGATCCTCGTGATCAT+GGG - chr4_4:58772193-58772212 Msa0690860:CDS 50.0%
GGAAGGGTCTTAATGCCCAT+TGG - chr4_4:58772322-58772341 Msa0690860:CDS 50.0%
GGTCTTAATGCCCATTGGGA+GGG - chr4_4:58772327-58772346 Msa0690860:CDS 50.0%
AAAGGCTTCACCCTCCCAAT+GGG + chr4_4:58772340-58772359 None:intergenic 50.0%
TAAAGGCTTCACCCTCCCAA+TGG + chr4_4:58772341-58772360 None:intergenic 50.0%
CCACATCAACATGAGCCTTG+CGG + chr4_4:58772431-58772450 None:intergenic 50.0%
GCCACCCATAAAAGGAAGTC+TGG - chr4_4:58772594-58772613 Msa0690860:CDS 50.0%
! GCCAGACTTCCTTTTATGGG+TGG + chr4_4:58772598-58772617 None:intergenic 50.0%
AATGGTAAGGCCTCCCAGAA+CGG - chr4_4:58772777-58772796 Msa0690860:intron 50.0%
TATCTCCTGCATCCCGTTCT+GGG + chr4_4:58772793-58772812 None:intergenic 50.0%
AACGGGATGCAGGAGATAGA+TGG - chr4_4:58772795-58772814 Msa0690860:intron 50.0%
ACGGGATGCAGGAGATAGAT+GGG - chr4_4:58772796-58772815 Msa0690860:intron 50.0%
GGGCGACGAAACTTGAATTG+TGG - chr4_4:58772817-58772836 Msa0690860:intron 50.0%
TTGTGGAAAGAGGTTGCTGG+TGG - chr4_4:58772834-58772853 Msa0690860:intron 50.0%
!! AAGAGTCGAGGTCGGTGTTA+TGG - chr4_4:58772858-58772877 Msa0690860:intron 50.0%
! TTTGCTTTAAACCTCCGGCG+TGG - chr4_4:58772891-58772910 Msa0690860:intron 50.0%
!! TGGTGTAACTTCGCTGACTC+AGG - chr4_4:58772911-58772930 Msa0690860:intron 50.0%
GAGTCTCGGGAACCTTATAG+TGG - chr4_4:58772933-58772952 Msa0690860:intron 50.0%
TCTCGGGAACCTTATAGTGG+TGG - chr4_4:58772936-58772955 Msa0690860:intron 50.0%
CTCGGGAACCTTATAGTGGT+GGG - chr4_4:58772937-58772956 Msa0690860:intron 50.0%
AAGTGTGAGTCAAGCTCGCA+GGG - chr4_4:58773172-58773191 Msa0690860:intron 50.0%
ACATCCTCGCTACGATGATG+AGG - chr4_4:58773472-58773491 Msa0690860:intron 50.0%
GAATCCTCATCATCGTAGCG+AGG + chr4_4:58773479-58773498 None:intergenic 50.0%
! TGATGACGATTTGCCAGACG+GGG - chr4_4:58773628-58773647 Msa0690860:intron 50.0%
TGACGAGGATTCGCTACATG+AGG - chr4_4:58773700-58773719 Msa0690860:intron 50.0%
GACGATGACGATTTGCCAGA+TGG - chr4_4:58773917-58773936 Msa0690860:intron 50.0%
CGATGACGATTTGCCAGATG+GGG - chr4_4:58773919-58773938 Msa0690860:intron 50.0%
!! TGACACCGATTCACTAGACG+AGG - chr4_4:58774060-58774079 Msa0690860:intron 50.0%
GCGGCGAGAAAGGGATAGAA+TGG + chr4_4:58769850-58769869 None:intergenic 55.0%
GTGATTCTTGGCGGCGAGAA+AGG + chr4_4:58769860-58769879 None:intergenic 55.0%
AGTGTGAGCGGTACCCTAAG+TGG - chr4_4:58771293-58771312 Msa0690860:intron 55.0%
! TATGGAGGTGCAGGAAGAGG+AGG - chr4_4:58771671-58771690 Msa0690860:CDS 55.0%
GGAGGAGGAATCAGAAGAGG+AGG - chr4_4:58771716-58771735 Msa0690860:CDS 55.0%
GGAGGAATCAGAAGAGGAGG+AGG - chr4_4:58771719-58771738 Msa0690860:CDS 55.0%
CTTATACGGCCCTGTGGTCT+AGG - chr4_4:58771834-58771853 Msa0690860:intron 55.0%
GCGTGTTTAATCGCAGCAGC+AGG + chr4_4:58772007-58772026 None:intergenic 55.0%
CGCCATCCAGTCACACTTTC+AGG - chr4_4:58772024-58772043 Msa0690860:intron 55.0%
GTGAGACCCCAGAGGATGTA+AGG - chr4_4:58772065-58772084 Msa0690860:intron 55.0%
GCTTGGGATCCTCGTGATCA+TGG - chr4_4:58772192-58772211 Msa0690860:CDS 55.0%
AGAAGGGGACGAGACCTCAT+TGG - chr4_4:58772283-58772302 Msa0690860:CDS 55.0%
GGGTCTTAATGCCCATTGGG+AGG - chr4_4:58772326-58772345 Msa0690860:CDS 55.0%
CCGCAAGGCTCATGTTGATG+TGG - chr4_4:58772428-58772447 Msa0690860:CDS 55.0%
TGCAGGCTCAAGAACTTGGG+CGG - chr4_4:58772544-58772563 Msa0690860:CDS 55.0%
TCAAGAACTTGGGCGGTCTG+TGG - chr4_4:58772551-58772570 Msa0690860:CDS 55.0%
ATGGTAAGGCCTCCCAGAAC+GGG - chr4_4:58772778-58772797 Msa0690860:intron 55.0%
CTATCTCCTGCATCCCGTTC+TGG + chr4_4:58772794-58772813 None:intergenic 55.0%
CGGGATGCAGGAGATAGATG+GGG - chr4_4:58772797-58772816 Msa0690860:intron 55.0%
GTTGCTGGTGGAAAGAGTCG+AGG - chr4_4:58772846-58772865 Msa0690860:intron 55.0%
CTGGTGGAAAGAGTCGAGGT+CGG - chr4_4:58772850-58772869 Msa0690860:intron 55.0%
TCAGCGAAGTTACACCACGC+CGG + chr4_4:58772908-58772927 None:intergenic 55.0%
!! CTTCGCTGACTCAGGAGTCT+CGG - chr4_4:58772919-58772938 Msa0690860:intron 55.0%
!! TTCGCTGACTCAGGAGTCTC+GGG - chr4_4:58772920-58772939 Msa0690860:intron 55.0%
CAAGTGTGAGTCAAGCTCGC+AGG - chr4_4:58773171-58773190 Msa0690860:intron 55.0%
AGTGTGAGTCAAGCTCGCAG+GGG - chr4_4:58773173-58773192 Msa0690860:intron 55.0%
AAGTGCGAGTCAAGCTCGCA+GGG - chr4_4:58773220-58773239 Msa0690860:intron 55.0%
CGACGACGACTCTCTAGATG+AGG - chr4_4:58773556-58773575 Msa0690860:intron 55.0%
TGCTTTGGTAAGACCCCGTC+TGG + chr4_4:58773644-58773663 None:intergenic 55.0%
TACGGTAATGACGACGGCGA+CGG + chr4_4:58774096-58774115 None:intergenic 55.0%
! TTGTAGGTGGGCTCCTAGCG+CGG - chr4_4:58771979-58771998 Msa0690860:CDS 60.0%
AACATGAGCCTTGCGGCCTG+TGG + chr4_4:58772424-58772443 None:intergenic 60.0%
GTGCTGCGGCAGCCTCTTTA+CGG + chr4_4:58773001-58773020 None:intergenic 60.0%
AGCAGCCTCCTGATGTGCTG+CGG + chr4_4:58773015-58773034 None:intergenic 60.0%
GTTTCGACTCAGCTGCCTCC+TGG + chr4_4:58773067-58773086 None:intergenic 60.0%
!! GCTCTAGAGCGCCAATCAGC+AGG - chr4_4:58773140-58773159 Msa0690860:intron 60.0%
CAAGTGCGAGTCAAGCTCGC+AGG - chr4_4:58773219-58773238 Msa0690860:intron 60.0%
AGTGCGAGTCAAGCTCGCAG+GGG - chr4_4:58773221-58773240 Msa0690860:intron 60.0%
ACGGTAATGACGACGGCGAC+GGG + chr4_4:58774095-58774114 None:intergenic 60.0%
TCGCTGGAGTGAGACCCCAG+AGG - chr4_4:58772057-58772076 Msa0690860:intron 65.0%
AGTCCACACCACAGGCCGCA+AGG - chr4_4:58772413-58772432 Msa0690860:CDS 65.0%
! CTCCTGCATCCCGTTCTGGG+AGG + chr4_4:58772790-58772809 None:intergenic 65.0%
GCGAAGTTACACCACGCCGG+AGG + chr4_4:58772905-58772924 None:intergenic 65.0%
AGAGGCTGCCGCAGCACATC+AGG - chr4_4:58773004-58773023 Msa0690860:intron 65.0%
TAATGACGACGGCGACGGGC+TGG + chr4_4:58774091-58774110 None:intergenic 65.0%
GGCGGAGCAGTCCACACCAC+AGG - chr4_4:58772405-58772424 Msa0690860:CDS 70.0%
GAGCCTTGCGGCCTGTGGTG+TGG + chr4_4:58772419-58772438 None:intergenic 70.0%
GGCCTCCCAGAACGGGATGC+AGG - chr4_4:58772785-58772804 Msa0690860:intron 70.0%
GGCTGCCGCAGCACATCAGG+AGG - chr4_4:58773007-58773026 Msa0690860:intron 70.0%
GGAGGCTGCTGCAGCACGTC+AGG - chr4_4:58773025-58773044 Msa0690860:intron 70.0%
GGCTGCTGCAGCACGTCAGG+AGG - chr4_4:58773028-58773047 Msa0690860:intron 70.0%
AGCTGCCTCCTGGCGTGCTG+TGG + chr4_4:58773057-58773076 None:intergenic 70.0%
CGCAGGGGACGCCAATCAGC+AGG - chr4_4:58773188-58773207 Msa0690860:intron 70.0%
GGAGGCAGCCACAGCACGCC+AGG - chr4_4:58773046-58773065 Msa0690860:intron 75.0%
GGCAGCCACAGCACGCCAGG+AGG - chr4_4:58773049-58773068 Msa0690860:intron 75.0%
!! GCAGCAGCAGGCGCCGCGCT+AGG + chr4_4:58771995-58772014 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 58769763 58774240 58769763 ID=Msa0690860;Name=Msa0690860
chr4_4 mRNA 58769763 58774240 58769763 ID=Msa0690860-mRNA-1;Parent=Msa0690860;Name=Msa0690860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=170|1|1|1|0.8|0.66|6|120|800
chr4_4 exon 58769763 58771265 58769763 ID=Msa0690860-mRNA-1:exon:15868;Parent=Msa0690860-mRNA-1
chr4_4 exon 58771353 58771454 58771353 ID=Msa0690860-mRNA-1:exon:15867;Parent=Msa0690860-mRNA-1
chr4_4 exon 58771542 58771820 58771542 ID=Msa0690860-mRNA-1:exon:15866;Parent=Msa0690860-mRNA-1
chr4_4 exon 58771892 58772018 58771892 ID=Msa0690860-mRNA-1:exon:15865;Parent=Msa0690860-mRNA-1
chr4_4 exon 58772147 58772661 58772147 ID=Msa0690860-mRNA-1:exon:15864;Parent=Msa0690860-mRNA-1
chr4_4 exon 58774074 58774240 58774074 ID=Msa0690860-mRNA-1:exon:15863;Parent=Msa0690860-mRNA-1
chr4_4 five_prime_UTR 58774074 58774240 58774074 ID=Msa0690860-mRNA-1:five_prime_utr;Parent=Msa0690860-mRNA-1
chr4_4 five_prime_UTR 58772659 58772661 58772659 ID=Msa0690860-mRNA-1:five_prime_utr;Parent=Msa0690860-mRNA-1
chr4_4 CDS 58772147 58772658 58772147 ID=Msa0690860-mRNA-1:cds;Parent=Msa0690860-mRNA-1
chr4_4 CDS 58771892 58772018 58771892 ID=Msa0690860-mRNA-1:cds;Parent=Msa0690860-mRNA-1
chr4_4 CDS 58771542 58771820 58771542 ID=Msa0690860-mRNA-1:cds;Parent=Msa0690860-mRNA-1
chr4_4 CDS 58771353 58771454 58771353 ID=Msa0690860-mRNA-1:cds;Parent=Msa0690860-mRNA-1
chr4_4 CDS 58769883 58771265 58769883 ID=Msa0690860-mRNA-1:cds;Parent=Msa0690860-mRNA-1
chr4_4 three_prime_UTR 58769763 58769882 58769763 ID=Msa0690860-mRNA-1:three_prime_utr;Parent=Msa0690860-mRNA-1
Gene Sequence

>Msa0690860

ATGGATCGTAGTTGGATGTATGATAGGATCAATCCACATAGGAAAGGCTTGAACTATGAGTTTGTTAGTGGAGTTCAGGAGTTTATTAAGAAGGCCAAGGAACAACCCTGCTTTTTGTCTGAGAGAAAGATCAAGTGTCCATGTGCAATGTGCAAGTGTGTAAAGTCTTTAACTCCAAGAGAGGTGAAAACTCATTTGTACAAGAGTGGGTTTCAACTAAACTATTTGGTCTGGACTGAGCATGGAGAACTTGAGCAAAATATTTGTCTAGGGAGTCAATCGAATAGCAGTAGACATATGGAGGAGGAGGATCCCAAAACTCCACATATGGAGGTGCAGGAAGAGGAGGATCCCAAAGTTCCTTCAGAAGAGGAGGAGGAATCAGAAGAGGAGGAGGATCCCAAAACTCCTCATACAGAGGATTCAGAAGAGGAGGAGGATCCCAAAACTCTCCAAGTTTCAGACAAGCAGAATGCTGATGGGAAGGTTCTTATACGGCCCTGTGGTCTAGGGTGGGCTCCTAGCGCGGCGCCTGCTGCTGCGATTAAACACGCCATCCAGTCACACTTTCAGGGTCCTTTCTATCGCTGGAGTGAGACCCCAGAGGATGTAAGGGAATATTGGTGGAAGTTGTTTGGGGACAAGATTGCTTGGGATCCTCGTGATCATGGGTATATCAAAAAGACGTTTCAAACAAGAGGCGCAAAACGCCTTTCAGATATGCTCTCAAAAGTGAGGAAGAAGGGGACGAGACCTCATTGGATATGTGAAGAGGCTTGGAAGGGTCTTAATGCCCATTGGGAGGGTGAAGCCTTTATAAAGATCTCTAGCCAAAATAAGGCCAATCGTAATTCGTGTAAAGGCGGAGCAGTCCACACCACAGGCCGCAAGGCTCATGTTGATGTGGCACTTAGCATGGCTCAAGAACTTGGGCGGTCTGTGGATCCCGATGAGCTCTTTTTAGCCACCCATAAAAGGAAGTCTGGCAATTGGGTTGATGACCGCTCTCAAACAACATATAAACAATATCACGATCGTCTGAAGGAGGTACAAACACAAAATGGTAAGGCCTCCCAGAACGGGATGCAGGAGATAGATGGGGCGACGAAACTTGAATTGTGGAAAGAGGTTGCTGGTGGAAAGAGTCGAGGTCGGTGTTATGGCACTGCAGACTTTGCTTTAAACCTCCGGCGTGGTGTAACTTCGCTGACTCAGGAGTCTCGGGAACCTTATAGTGGTGGGTGTGATCATGCTATGCATCTAGAGGCCATTGATGCAGTCCGTAAAGAGGCTGCCGCAGCACATCAGGAGGCTGCTGCAGCACGTCAGGAGGCAGCCACAGCACGCCAGGAGGCAGCTGAGTCGAAACAACATTATCAGCATTTGGAGGAGCAGTTGCGCAAAGTAATGAAGCACATGAAAGCTCTAGAGCGCCAATCAGCAGGTGCTTTCACAAGTGTGAGTCAAGCTCGCAGGGGACGCCAATCAGCAGGTGCTTTCACAAGTGCGAGTCAAGCTCGCAGGGGACATCCTCGCTATGATGATGACCATTCACTAGACGAGTTCTTAGCAGACCGTCGAAGAAAGAAACATCTAGCTCTAAGGCGACATTCTCATTATGATGACGACTATTCAGTAGATGAGATCTTCCCAAACCGTCGCCAAAAACATCAAGCTCACAAGAGACATTATCACTATGATGATGAGGATTCGCTGGATTCACTCTTACCAAAGCATCATCAAGCTGAAAGGGGACATCCTCGCTACGATGATGAGGATTCACTAGATGAGGTTTTACCAAAGCAGCGTCAAGCTAAAAGGGGTCGTTCTCACTATGACGACGACGACTCTCTAGATGAGGTCTTACCAAAGCAACATCATGCTAAAAGGGGACATCCTCACTATGACGATGATGACGATTTGCCAGACGGGGTCTTACCAAAGCAACGACAAGCTAAAAAGCGGCATCCTCACCATGATAATGACGAGGATTCGCTACATGAGGACTTACCAAAGAATCATCAAGCTAAAAGGGGACGTCCTCACTATGATGACGAAGACAATTTGTTAGATGGGGTTTTACCAAAGCAACCTCAAGCTAAAAAGCGACATCCTCACTATGATAATGATGGGGATTCGTTACATGAGGACTTACCAAAGAATCATCAAGCTGAAAGGGGACAGCCTCACTATGATGATGACGATGACGATTTGCCAGATGGGGTTTTACCAAAGCAACGTCAAGCTAAAAAGCTACATCCTCACTATGATAATGATGAGGATTCGCTACATGAGGACTTACCAAAGAATCATCAAGCTAAAAGGGGACGTCCTCTTTATGATGACACCGATTCACTAGACGAGGTCTTACCAGCCCGTCGCCGTCGTCATTACCGTAGTTGA
Protein sequence

>Msa0690860

MDRSWMYDRINPHRKGLNYEFVSGVQEFIKKAKEQPCFLSERKIKCPCAMCKCVKSLTPREVKTHLYKSGFQLNYLVWTEHGELEQNICLGSQSNSSRHMEEEDPKTPHMEVQEEEDPKVPSEEEEESEEEEDPKTPHTEDSEEEEDPKTLQVSDKQNADGKVLIRPCGLGWAPSAAPAAAIKHAIQSHFQGPFYRWSETPEDVREYWWKLFGDKIAWDPRDHGYIKKTFQTRGAKRLSDMLSKVRKKGTRPHWICEEAWKGLNAHWEGEAFIKISSQNKANRNSCKGGAVHTTGRKAHVDVALSMAQELGRSVDPDELFLATHKRKSGNWVDDRSQTTYKQYHDRLKEVQTQNGKASQNGMQEIDGATKLELWKEVAGGKSRGRCYGTADFALNLRRGVTSLTQESREPYSGGCDHAMHLEAIDAVRKEAAAAHQEAAAARQEAATARQEAAESKQHYQHLEEQLRKVMKHMKALERQSAGAFTSVSQARRGRQSAGAFTSASQARRGHPRYDDDHSLDEFLADRRRKKHLALRRHSHYDDDYSVDEIFPNRRQKHQAHKRHYHYDDEDSLDSLLPKHHQAERGHPRYDDEDSLDEVLPKQRQAKRGRSHYDDDDSLDEVLPKQHHAKRGHPHYDDDDDLPDGVLPKQRQAKKRHPHHDNDEDSLHEDLPKNHQAKRGRPHYDDEDNLLDGVLPKQPQAKKRHPHYDNDGDSLHEDLPKNHQAERGQPHYDDDDDDLPDGVLPKQRQAKKLHPHYDNDEDSLHEDLPKNHQAKRGRPLYDDTDSLDEVLPARRRRHYRS*