AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1236120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236120 MtrunA17_Chr1g0213361 93.417 319 17 3 1 317 1 317 0.0 556
Msa1236120 MtrunA17_Chr1g0181861 62.821 234 86 1 82 314 1 234 1.65e-106 310
Msa1236120 MtrunA17_Chr7g0263221 63.362 232 84 1 86 316 4 235 2.94e-105 307
Msa1236120 MtrunA17_Chr1g0181851 55.405 222 67 1 93 314 8 197 7.11e-82 248
Msa1236120 MtrunA17_Chr1g0181841 58.865 141 32 1 87 201 1 141 2.70e-50 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236120 AT3G55040.1 59.921 252 98 2 65 315 39 288 2.74e-104 307
Msa1236120 AT5G02790.1 64.286 224 79 1 92 314 12 235 7.89e-103 301
Msa1236120 AT5G02780.1 62.780 223 80 3 94 314 16 237 5.65e-98 289
Msa1236120 AT5G02780.3 62.780 223 80 3 94 314 16 237 5.65e-98 289
Msa1236120 AT5G02780.2 63.063 222 79 3 94 314 16 235 2.51e-97 287
Msa1236120 AT1G19570.1 25.126 199 138 6 117 312 20 210 1.56e-11 63.2

Find 109 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGCAAGGCCACAGATTT+TGG 0.183588 8_2:-14593631 Msa1236120:CDS
TCAGACCTTTAGTTATTAAT+TGG 0.188177 8_2:+14591047 None:intergenic
GACTGAGAACAAACTATTAT+TGG 0.219954 8_2:+14593653 None:intergenic
CCTCCACCTTCCTTATTTGA+TGG 0.224092 8_2:-14593277 Msa1236120:CDS
GAAAGGTCCTCGATCATATT+TGG 0.263184 8_2:+14592151 None:intergenic
TCATCATCATATAGGAATTA+TGG 0.265649 8_2:-14593706 Msa1236120:CDS
AGGAGTCAAGAGTTCCAAAA+TGG 0.298721 8_2:-14591312 Msa1236120:three_prime_UTR
GATGCCAAACATTGAATTCA+TGG 0.301206 8_2:+14591340 None:intergenic
ATCTACAAGACAGACCTTCT+TGG 0.322770 8_2:-14592858 Msa1236120:CDS
CCTGGTGGTTCCATCAAATA+AGG 0.333486 8_2:+14593267 None:intergenic
TGAAGTTAGAGGAGAGAGTC+TGG 0.356107 8_2:-14592665 Msa1236120:CDS
TATATTGACACTCACTTTGA+AGG 0.358114 8_2:-14592631 Msa1236120:CDS
CTTCCTTGGCCAATTCAGTC+TGG 0.360188 8_2:-14592129 Msa1236120:intron
TTAATAACTAAAGGTCTGAT+TGG 0.369479 8_2:-14591043 Msa1236120:three_prime_UTR
GTGGAGGTGAAGTGGAAGTA+AGG 0.371907 8_2:+14593293 None:intergenic
GGTGCCTGTCGTATGATTCC+TGG 0.375012 8_2:+14591248 None:intergenic
GCCCCTATGCCCAGCGTGTA+TGG 0.379106 8_2:-14593126 Msa1236120:CDS
GCAGACATACCCGGTTGATA+TGG 0.386993 8_2:+14593479 None:intergenic
AAGAATAACCTTAGTGTTAC+GGG 0.390064 8_2:+14593099 None:intergenic
GAACACAATAATGAAGTTAG+AGG 0.398648 8_2:-14592676 Msa1236120:CDS
GTTATGGAAGCAGGGATTGC+AGG 0.399441 8_2:-14592905 Msa1236120:intron
TATAGCATATGCTCCTTTCA+TGG 0.403086 8_2:-14591986 Msa1236120:CDS
TAAGGATAAATAACCTTGTT+GGG 0.403441 8_2:+14592814 None:intergenic
GATCGAGGACCTTTCTTCCT+TGG 0.404035 8_2:-14592143 Msa1236120:CDS
GTATCTCACACTAGGGTAAA+GGG 0.404706 8_2:+14592603 None:intergenic
TAGCTTTCAACTAACTCCTT+AGG 0.406704 8_2:+14591471 None:intergenic
TCAATGTTTGGCATCATAGT+AGG 0.413145 8_2:-14591332 Msa1236120:three_prime_UTR
AAATCCATGAATTCAATGTT+TGG 0.414052 8_2:-14591344 Msa1236120:exon
GAAGTGGAAGTAAGGGGTGG+TGG 0.415614 8_2:+14593301 None:intergenic
GTGGAAATGGATGGCAGATA+TGG 0.418327 8_2:+14593584 None:intergenic
ATTCATTGTCATCATCATAT+AGG 0.423743 8_2:-14593714 Msa1236120:CDS
TAACTTCATATTATAAACTT+TGG 0.431944 8_2:+14591120 None:intergenic
AGGTCTGTCTTGTAGATCAA+TGG 0.438145 8_2:+14592864 None:intergenic
AATCCATACACGCTGGGCAT+AGG 0.442924 8_2:+14593123 None:intergenic
GTCGTATGATTCCTGGTCCC+TGG 0.443646 8_2:+14591255 None:intergenic
GAAGAATAACCTTAGTGTTA+CGG 0.444757 8_2:+14593098 None:intergenic
AGTGGCAAAGTAAACTGTTT+GGG 0.444817 8_2:-14591087 Msa1236120:three_prime_UTR
CTAATCATCATTTCAATATG+TGG 0.446573 8_2:+14591188 None:intergenic
ATCCATACACGCTGGGCATA+GGG 0.447295 8_2:+14593124 None:intergenic
ATAAGGATAAATAACCTTGT+TGG 0.448370 8_2:+14592813 None:intergenic
ACAACAGTAGCCATATCAAC+CGG 0.450420 8_2:-14593489 Msa1236120:CDS
AAGCTACAAGAAGCGATTCC+TGG 0.453316 8_2:-14591454 Msa1236120:intron
CAGTGGCAAAGTAAACTGTT+TGG 0.453892 8_2:-14591088 Msa1236120:three_prime_UTR
GTATACGCACCAGACTGAAT+TGG 0.454158 8_2:+14592120 None:intergenic
GCTTATTATGAGGTGAATAG+TGG 0.457123 8_2:+14593565 None:intergenic
TATGAGGTGAATAGTGGAAA+TGG 0.459487 8_2:+14593571 None:intergenic
AAAGGAGATGCAACTGAGGC+TGG 0.461674 8_2:-14592426 Msa1236120:intron
TAAATAGGGTCCTGATGATA+AGG 0.462553 8_2:-14592511 Msa1236120:intron
AGTATCTCACACTAGGGTAA+AGG 0.474393 8_2:+14592602 None:intergenic
CAAATGCATTATATCCATCC+AGG 0.479463 8_2:-14591273 Msa1236120:three_prime_UTR
GGTCTGTCTTGTAGATCAAT+GGG 0.491503 8_2:+14592865 None:intergenic
CTGAATTGGCCAAGGAAGAA+AGG 0.493947 8_2:+14592134 None:intergenic
TAAGGAAGGTGGAGGTGAAG+TGG 0.498397 8_2:+14593285 None:intergenic
TCAGCAAACTCCTTATCATC+AGG 0.499949 8_2:+14592501 None:intergenic
CTGGGCATAGGGGCATTTGT+AGG 0.503100 8_2:+14593135 None:intergenic
CAGAATTAAACCGCCGTCGA+AGG 0.505283 8_2:+14593538 None:intergenic
TAACTCCTTAGGATCAGAAC+GGG 0.507962 8_2:+14591482 None:intergenic
AATAACCCGTTCTGATCCTA+AGG 0.511599 8_2:-14591487 Msa1236120:CDS
TCATTATTGTGTTCAAGAGA+TGG 0.511615 8_2:+14592685 None:intergenic
TGGAGGTGAAGTGGAAGTAA+GGG 0.513320 8_2:+14593294 None:intergenic
TCAATCCATGCCGTCAGTCT+AGG 0.513878 8_2:+14591907 None:intergenic
TAGACTGACGGCATGGATTG+AGG 0.527075 8_2:-14591905 Msa1236120:intron
TATGATTCCTGGTCCCTGGA+TGG 0.532270 8_2:+14591259 None:intergenic
CTACTGTTGTCACGCGAACA+TGG 0.536329 8_2:+14593502 None:intergenic
TAATTCCAATTAATAACTAA+AGG 0.540446 8_2:-14591052 Msa1236120:three_prime_UTR
GGTTGAAATCTTTCCATGAA+AGG 0.546893 8_2:+14591973 None:intergenic
GGAGTCAAGAGTTCCAAAAT+GGG 0.549019 8_2:-14591311 Msa1236120:three_prime_UTR
ATAAGCTTCACCTTCGACGG+CGG 0.549183 8_2:-14593548 Msa1236120:CDS
CAGGGAATAAACAACATTGA+AGG 0.550138 8_2:-14591516 Msa1236120:CDS
CGAAGGTGAAGCTTATTATG+AGG 0.551058 8_2:+14593555 None:intergenic
ACTTTGTCCTTGTACCAAGA+AGG 0.553580 8_2:+14592844 None:intergenic
ATTATGACATTACAGTGGGC+AGG 0.560090 8_2:-14591930 Msa1236120:CDS
ATTATATCCATCCAGGGACC+AGG 0.562197 8_2:-14591266 Msa1236120:three_prime_UTR
GGAGGTGAAGTGGAAGTAAG+GGG 0.562918 8_2:+14593295 None:intergenic
AGACAGACCTTCTTGGTACA+AGG 0.563276 8_2:-14592851 Msa1236120:CDS
CAGATATGGACATGAAAGGA+AGG 0.564706 8_2:+14593598 None:intergenic
TGAAGTTACTACTGAGGCAG+TGG 0.570588 8_2:-14591105 Msa1236120:three_prime_UTR
CCTTATTTGATGGAACCACC+AGG 0.579548 8_2:-14593267 Msa1236120:intron
ATGGATTACCCGTAACACTA+AGG 0.580470 8_2:-14593107 Msa1236120:intron
ACGGGTAATCCATACACGCT+GGG 0.590798 8_2:+14593117 None:intergenic
CCATCAAATAAGGAAGGTGG+AGG 0.604129 8_2:+14593277 None:intergenic
ATAATAAGCTTCACCTTCGA+CGG 0.605217 8_2:-14593551 Msa1236120:CDS
CAAAGTCTATCCACCCAACA+AGG 0.610295 8_2:-14592827 Msa1236120:intron
AGATATGGACATGAAAGGAA+GGG 0.611763 8_2:+14593599 None:intergenic
TAATAAACATGCAAGTCACA+CGG 0.614141 8_2:+14591150 None:intergenic
TAATCAGTCTGTCTAGCGAT+CGG 0.615061 8_2:+14591227 None:intergenic
AGTGGGCAGGCCTAGACTGA+CGG 0.618947 8_2:-14591917 Msa1236120:CDS
GGGACCAGGAATCATACGAC+AGG 0.620691 8_2:-14591252 Msa1236120:three_prime_UTR
GTTCCATCAAATAAGGAAGG+TGG 0.631796 8_2:+14593274 None:intergenic
TACGGGTAATCCATACACGC+TGG 0.632731 8_2:+14593116 None:intergenic
ATGGCAGATATGGACATGAA+AGG 0.635823 8_2:+14593594 None:intergenic
AAATGCATTATATCCATCCA+GGG 0.637218 8_2:-14591272 Msa1236120:three_prime_UTR
ATAATATGAAGTTACTACTG+AGG 0.637899 8_2:-14591111 Msa1236120:three_prime_UTR
GTGGTTCCATCAAATAAGGA+AGG 0.639894 8_2:+14593271 None:intergenic
AATAAACATGCAAGTCACAC+GGG 0.644482 8_2:+14591151 None:intergenic
GGATAAATAACCTTGTTGGG+TGG 0.645523 8_2:+14592817 None:intergenic
AGGTGAATAGTGGAAATGGA+TGG 0.645679 8_2:+14593575 None:intergenic
ATTTGGAGAGAACAGTCTCA+AGG 0.647917 8_2:+14592168 None:intergenic
TCCATACACGCTGGGCATAG+GGG 0.648367 8_2:+14593125 None:intergenic
GCACCAGACTGAATTGGCCA+AGG 0.652421 8_2:+14592126 None:intergenic
GTTTGTTCTCAGTCTCAGCA+AGG 0.652630 8_2:-14593644 Msa1236120:CDS
GAAGAAGTAACCAAAATCTG+TGG 0.656679 8_2:+14593621 None:intergenic
CAACAGTAGCCATATCAACC+GGG 0.657885 8_2:-14593488 Msa1236120:intron
CTAACTCCTTAGGATCAGAA+CGG 0.661345 8_2:+14591481 None:intergenic
GTTCTCTCCAAATATGATCG+AGG 0.666913 8_2:-14592158 Msa1236120:CDS
TCTCACACTAGGGTAAAGGG+AGG 0.686990 8_2:+14592606 None:intergenic
TTGATCTAGAGACAGTGCCA+TGG 0.690248 8_2:-14593804 Msa1236120:five_prime_UTR
GGTGAAGTGGAAGTAAGGGG+TGG 0.709587 8_2:+14593298 None:intergenic
CTCACACTAGGGTAAAGGGA+GGG 0.728160 8_2:+14592607 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAGTTTATGTTTATATTT+TGG + chr8_2:14592269-14592288 None:intergenic 10.0%
!! AACTTTACTATTTAATAAAT+AGG - chr8_2:14592282-14592301 Msa1236120:intron 10.0%
!! ACTTTACTATTTAATAAATA+GGG - chr8_2:14592283-14592302 Msa1236120:intron 10.0%
!! AATATTTCATGATATAATTA+TGG - chr8_2:14592982-14593001 Msa1236120:intron 10.0%
!! ATATTTCATGATATAATTAT+GGG - chr8_2:14592983-14593002 Msa1236120:intron 10.0%
!!! TTAATTTGTGTTAATTTGTT+TGG + chr8_2:14591594-14591613 None:intergenic 15.0%
!! TAACTTCATATTATAAACTT+TGG + chr8_2:14593691-14593710 None:intergenic 15.0%
!! TAATTCCAATTAATAACTAA+AGG - chr8_2:14593756-14593775 Msa1236120:five_prime_UTR 15.0%
!! TAAGGTTATTCTTCATATAT+TGG - chr8_2:14591719-14591738 Msa1236120:intron 20.0%
!!! TAAAACAAACACCTTTTTAA+CGG - chr8_2:14591831-14591850 Msa1236120:intron 20.0%
!!! TGATTTTCACACAATTTATT+TGG - chr8_2:14591858-14591877 Msa1236120:intron 20.0%
!!! AACAAAACATATCATTGTTT+TGG + chr8_2:14592030-14592049 None:intergenic 20.0%
!!! AAAAATCACTATTTAGAATG+TGG + chr8_2:14592070-14592089 None:intergenic 20.0%
!! ATTTATGTATTTCCAATTTC+AGG - chr8_2:14592098-14592117 Msa1236120:intron 20.0%
!! TATAAGAGAAATGTTAAATC+TGG - chr8_2:14592447-14592466 Msa1236120:CDS 20.0%
!!! CAAAGTTTTCTATTAATTTC+AGG - chr8_2:14592795-14592814 Msa1236120:intron 20.0%
!!! TTTTTCACATCCATTAAAAA+CGG + chr8_2:14592859-14592878 None:intergenic 20.0%
!! AAAAATTATGACATTACAGT+GGG - chr8_2:14592874-14592893 Msa1236120:CDS 20.0%
!! CTACATATAATAAAGGATTA+TGG + chr8_2:14593442-14593461 None:intergenic 20.0%
!! CATAATCCTTTATTATATGT+AGG - chr8_2:14593440-14593459 Msa1236120:intron 20.0%
! ATTCATTGTCATCATCATAT+AGG - chr8_2:14591094-14591113 Msa1236120:three_prime_UTR 25.0%
! TCATCATCATATAGGAATTA+TGG - chr8_2:14591102-14591121 Msa1236120:three_prime_UTR 25.0%
!!! GTATATACTGTTTTTACAAC+AGG + chr8_2:14591797-14591816 None:intergenic 25.0%
! AAAATCACAAACCGTTAAAA+AGG + chr8_2:14591845-14591864 None:intergenic 25.0%
! TAAGGATAAATAACCTTGTT+GGG + chr8_2:14591997-14592016 None:intergenic 25.0%
! ATAAGGATAAATAACCTTGT+TGG + chr8_2:14591998-14592017 None:intergenic 25.0%
!!! AACAATGATATGTTTTGTTG+TGG - chr8_2:14592031-14592050 Msa1236120:intron 25.0%
!! ATATAAAGTATCTCACACTA+GGG + chr8_2:14592215-14592234 None:intergenic 25.0%
!! AATATAAAGTATCTCACACT+AGG + chr8_2:14592216-14592235 None:intergenic 25.0%
!!! CACTTTTGATCTTTATTTTC+AGG - chr8_2:14592242-14592261 Msa1236120:intron 25.0%
!!! ACAGTTGTTGCTTATTTTAA+AGG - chr8_2:14592364-14592383 Msa1236120:intron 25.0%
! AAATGTTAAATCTGGAGAAA+GGG - chr8_2:14592455-14592474 Msa1236120:CDS 25.0%
!! AGTTTTCTATTAATTTCAGG+TGG - chr8_2:14592798-14592817 Msa1236120:intron 25.0%
!!! AAGATTTCAACCGTTTTTAA+TGG - chr8_2:14592846-14592865 Msa1236120:CDS 25.0%
! GAAAAATTATGACATTACAG+TGG - chr8_2:14592873-14592892 Msa1236120:CDS 25.0%
! TAAAATTGTGCTCTTAATAC+AGG - chr8_2:14593273-14593292 Msa1236120:CDS 25.0%
! AAAATTGTGCTCTTAATACA+GGG - chr8_2:14593274-14593293 Msa1236120:CDS 25.0%
! GATTTGCCTACATATAATAA+AGG + chr8_2:14593449-14593468 None:intergenic 25.0%
! AAATCCATGAATTCAATGTT+TGG - chr8_2:14593464-14593483 Msa1236120:intron 25.0%
! CTAATCATCATTTCAATATG+TGG + chr8_2:14593623-14593642 None:intergenic 25.0%
! ATAATATGAAGTTACTACTG+AGG - chr8_2:14593697-14593716 Msa1236120:CDS 25.0%
! TCAGACCTTTAGTTATTAAT+TGG + chr8_2:14593764-14593783 None:intergenic 25.0%
! TTAATAACTAAAGGTCTGAT+TGG - chr8_2:14593765-14593784 Msa1236120:five_prime_UTR 25.0%
!!! TCTATTTTTTAACGAACGTG+TGG + chr8_2:14591030-14591049 None:intergenic 30.0%
GTTCGTTAAAAAATAGAGTG+AGG - chr8_2:14591033-14591052 Msa1236120:three_prime_UTR 30.0%
GACTGAGAACAAACTATTAT+TGG + chr8_2:14591158-14591177 None:intergenic 30.0%
AGATAAGAAAGTAAGAAACC+TGG + chr8_2:14591562-14591581 None:intergenic 30.0%
AAGAATAACCTTAGTGTTAC+GGG + chr8_2:14591712-14591731 None:intergenic 30.0%
GAAGAATAACCTTAGTGTTA+CGG + chr8_2:14591713-14591732 None:intergenic 30.0%
CAAGATCTCTATGTATGTTA+TGG - chr8_2:14591887-14591906 Msa1236120:intron 30.0%
!!! TGTTTTGGCACAAAGTTATA+AGG + chr8_2:14592015-14592034 None:intergenic 30.0%
TCATTATTGTGTTCAAGAGA+TGG + chr8_2:14592126-14592145 None:intergenic 30.0%
GAACACAATAATGAAGTTAG+AGG - chr8_2:14592132-14592151 Msa1236120:CDS 30.0%
TATATTGACACTCACTTTGA+AGG - chr8_2:14592177-14592196 Msa1236120:CDS 30.0%
GAAATGTTAAATCTGGAGAA+AGG - chr8_2:14592454-14592473 Msa1236120:CDS 30.0%
AATGTTAAATCTGGAGAAAG+GGG - chr8_2:14592456-14592475 Msa1236120:CDS 30.0%
AACCGTCATTTCATTGTTTA+GGG - chr8_2:14592484-14592503 Msa1236120:CDS 30.0%
AAATGCATTATATCCATCCA+GGG - chr8_2:14593536-14593555 Msa1236120:CDS 30.0%
! TTTCAATATGTGGCATTTTC+TGG + chr8_2:14593613-14593632 None:intergenic 30.0%
TAATAAACATGCAAGTCACA+CGG + chr8_2:14593661-14593680 None:intergenic 30.0%
GAAGAAGTAACCAAAATCTG+TGG + chr8_2:14591190-14591209 None:intergenic 35.0%
AGATATGGACATGAAAGGAA+GGG + chr8_2:14591212-14591231 None:intergenic 35.0%
! TATGAGGTGAATAGTGGAAA+TGG + chr8_2:14591240-14591259 None:intergenic 35.0%
GCTTATTATGAGGTGAATAG+TGG + chr8_2:14591246-14591265 None:intergenic 35.0%
ATAATAAGCTTCACCTTCGA+CGG - chr8_2:14591257-14591276 Msa1236120:three_prime_UTR 35.0%
TAAGAAAGTAAGAAACCTGG+TGG + chr8_2:14591559-14591578 None:intergenic 35.0%
!!! TACTGTTTTTACAACAGGAG+AGG + chr8_2:14591792-14591811 None:intergenic 35.0%
TCTATGTATGTTATGGAAGC+AGG - chr8_2:14591894-14591913 Msa1236120:intron 35.0%
CTATGTATGTTATGGAAGCA+GGG - chr8_2:14591895-14591914 Msa1236120:intron 35.0%
TAAATAGGGTCCTGATGATA+AGG - chr8_2:14592297-14592316 Msa1236120:intron 35.0%
!! TTTTAAAGGAGATGCAACTG+AGG - chr8_2:14592378-14592397 Msa1236120:intron 35.0%
ATGTTAAATCTGGAGAAAGG+GGG - chr8_2:14592457-14592476 Msa1236120:CDS 35.0%
GAACCGTCATTTCATTGTTT+AGG - chr8_2:14592483-14592502 Msa1236120:CDS 35.0%
ACCGTCATTTCATTGTTTAG+GGG - chr8_2:14592485-14592504 Msa1236120:CDS 35.0%
TCATTGTTTAGGGGGAAATA+AGG - chr8_2:14592494-14592513 Msa1236120:CDS 35.0%
GTCAATAATGCACAGTATAG+TGG - chr8_2:14592731-14592750 Msa1236120:intron 35.0%
TATAGCATATGCTCCTTTCA+TGG - chr8_2:14592822-14592841 Msa1236120:intron 35.0%
GGTTGAAATCTTTCCATGAA+AGG + chr8_2:14592838-14592857 None:intergenic 35.0%
CAATGAGTTTGCCATAATCA+TGG + chr8_2:14593121-14593140 None:intergenic 35.0%
TGTGATTTCAAGCATACACT+TGG - chr8_2:14593139-14593158 Msa1236120:CDS 35.0%
CTAACGTAGACCAATAAAGA+TGG - chr8_2:14593173-14593192 Msa1236120:intron 35.0%
ACCAATAAAGATGGAACCTT+GGG - chr8_2:14593182-14593201 Msa1236120:intron 35.0%
TATTCATCATGTCATACCCA+AGG + chr8_2:14593201-14593220 None:intergenic 35.0%
TGACATGATGAATATGTCAC+AGG - chr8_2:14593207-14593226 Msa1236120:intron 35.0%
TTAATTCTTGAGTGAAGCTC+AGG + chr8_2:14593256-14593275 None:intergenic 35.0%
CAGGGAATAAACAACATTGA+AGG - chr8_2:14593292-14593311 Msa1236120:CDS 35.0%
TAGCTTTCAACTAACTCCTT+AGG + chr8_2:14593340-14593359 None:intergenic 35.0%
! TAGTTCTGTCTTATGATACC+AGG + chr8_2:14593375-14593394 None:intergenic 35.0%
GATGCCAAACATTGAATTCA+TGG + chr8_2:14593471-14593490 None:intergenic 35.0%
TCAATGTTTGGCATCATAGT+AGG - chr8_2:14593476-14593495 Msa1236120:intron 35.0%
! TCTGATTTTCTGACCCATTT+TGG + chr8_2:14593513-14593532 None:intergenic 35.0%
CAAATGCATTATATCCATCC+AGG - chr8_2:14593535-14593554 Msa1236120:CDS 35.0%
AATAAACATGCAAGTCACAC+GGG + chr8_2:14593660-14593679 None:intergenic 35.0%
AGTGGCAAAGTAAACTGTTT+GGG - chr8_2:14593721-14593740 Msa1236120:CDS 35.0%
CAGATATGGACATGAAAGGA+AGG + chr8_2:14591213-14591232 None:intergenic 40.0%
ATGGCAGATATGGACATGAA+AGG + chr8_2:14591217-14591236 None:intergenic 40.0%
! AGGTGAATAGTGGAAATGGA+TGG + chr8_2:14591236-14591255 None:intergenic 40.0%
CGAAGGTGAAGCTTATTATG+AGG + chr8_2:14591256-14591275 None:intergenic 40.0%
ACAACAGTAGCCATATCAAC+CGG - chr8_2:14591319-14591338 Msa1236120:three_prime_UTR 40.0%
GTTCCATCAAATAAGGAAGG+TGG + chr8_2:14591537-14591556 None:intergenic 40.0%
GTGGTTCCATCAAATAAGGA+AGG + chr8_2:14591540-14591559 None:intergenic 40.0%
! ATGGATTACCCGTAACACTA+AGG - chr8_2:14591701-14591720 Msa1236120:intron 40.0%
GGTCTGTCTTGTAGATCAAT+GGG + chr8_2:14591946-14591965 None:intergenic 40.0%
AGGTCTGTCTTGTAGATCAA+TGG + chr8_2:14591947-14591966 None:intergenic 40.0%
ATCTACAAGACAGACCTTCT+TGG - chr8_2:14591950-14591969 Msa1236120:CDS 40.0%
ACTTTGTCCTTGTACCAAGA+AGG + chr8_2:14591967-14591986 None:intergenic 40.0%
GGATAAATAACCTTGTTGGG+TGG + chr8_2:14591994-14592013 None:intergenic 40.0%
CAAGAGATGGAACCTGAAAT+TGG + chr8_2:14592113-14592132 None:intergenic 40.0%
GTATCTCACACTAGGGTAAA+GGG + chr8_2:14592208-14592227 None:intergenic 40.0%
AGTATCTCACACTAGGGTAA+AGG + chr8_2:14592209-14592228 None:intergenic 40.0%
TCAGCAAACTCCTTATCATC+AGG + chr8_2:14592310-14592329 None:intergenic 40.0%
CCCCCTAAACAATGAAATGA+CGG + chr8_2:14592489-14592508 None:intergenic 40.0%
CCGTCATTTCATTGTTTAGG+GGG - chr8_2:14592486-14592505 Msa1236120:CDS 40.0%
TCACGTTACACTGCTTCATT+AGG - chr8_2:14592602-14592621 Msa1236120:intron 40.0%
ATTTGGAGAGAACAGTCTCA+AGG + chr8_2:14592643-14592662 None:intergenic 40.0%
GTTCTCTCCAAATATGATCG+AGG - chr8_2:14592650-14592669 Msa1236120:CDS 40.0%
GAAAGGTCCTCGATCATATT+TGG + chr8_2:14592660-14592679 None:intergenic 40.0%
ATTATGACATTACAGTGGGC+AGG - chr8_2:14592878-14592897 Msa1236120:CDS 40.0%
!! ATTGCATCGAGGTCGTTTTA+TGG - chr8_2:14593019-14593038 Msa1236120:intron 40.0%
ATCCAAACGTCACTAACTTC+TGG + chr8_2:14593068-14593087 None:intergenic 40.0%
AGTTAGTGACGTTTGGATTC+AGG - chr8_2:14593070-14593089 Msa1236120:intron 40.0%
GTTAGTGACGTTTGGATTCA+GGG - chr8_2:14593071-14593090 Msa1236120:intron 40.0%
! ATCATGGTGGCATCATGTTT+TGG + chr8_2:14593105-14593124 None:intergenic 40.0%
ACATGATGCCACCATGATTA+TGG - chr8_2:14593107-14593126 Msa1236120:intron 40.0%
TGAGTTTGCCATAATCATGG+TGG + chr8_2:14593118-14593137 None:intergenic 40.0%
CAAGCATACACTTGGACATT+AGG - chr8_2:14593147-14593166 Msa1236120:CDS 40.0%
GACCAATAAAGATGGAACCT+TGG - chr8_2:14593181-14593200 Msa1236120:intron 40.0%
ACCCAAGGTTCCATCTTTAT+TGG + chr8_2:14593186-14593205 None:intergenic 40.0%
AATAACCCGTTCTGATCCTA+AGG - chr8_2:14593321-14593340 Msa1236120:CDS 40.0%
TAACTCCTTAGGATCAGAAC+GGG + chr8_2:14593329-14593348 None:intergenic 40.0%
CTAACTCCTTAGGATCAGAA+CGG + chr8_2:14593330-14593349 None:intergenic 40.0%
AGGAGTCAAGAGTTCCAAAA+TGG - chr8_2:14593496-14593515 Msa1236120:CDS 40.0%
GGAGTCAAGAGTTCCAAAAT+GGG - chr8_2:14593497-14593516 Msa1236120:CDS 40.0%
TAATCAGTCTGTCTAGCGAT+CGG + chr8_2:14593584-14593603 None:intergenic 40.0%
CAGTGGCAAAGTAAACTGTT+TGG - chr8_2:14593720-14593739 Msa1236120:CDS 40.0%
TTGATCTAGAGACAGTGCCA+TGG - chr8_2:14591004-14591023 Msa1236120:three_prime_UTR 45.0%
! TTTTAACGAACGTGTGGCCA+TGG + chr8_2:14591024-14591043 None:intergenic 45.0%
GTTTGTTCTCAGTCTCAGCA+AGG - chr8_2:14591164-14591183 Msa1236120:three_prime_UTR 45.0%
GTGGAAATGGATGGCAGATA+TGG + chr8_2:14591227-14591246 None:intergenic 45.0%
CAACAGTAGCCATATCAACC+GGG - chr8_2:14591320-14591339 Msa1236120:three_prime_UTR 45.0%
TGGAGGTGAAGTGGAAGTAA+GGG + chr8_2:14591517-14591536 None:intergenic 45.0%
CCATCAAATAAGGAAGGTGG+AGG + chr8_2:14591534-14591553 None:intergenic 45.0%
! CCTCCACCTTCCTTATTTGA+TGG - chr8_2:14591531-14591550 Msa1236120:intron 45.0%
CCTGGTGGTTCCATCAAATA+AGG + chr8_2:14591544-14591563 None:intergenic 45.0%
! CCTTATTTGATGGAACCACC+AGG - chr8_2:14591541-14591560 Msa1236120:intron 45.0%
TGTGACTGTGACTGAACTGA+AGG - chr8_2:14591640-14591659 Msa1236120:intron 45.0%
AGACAGACCTTCTTGGTACA+AGG - chr8_2:14591957-14591976 Msa1236120:CDS 45.0%
CAAAGTCTATCCACCCAACA+AGG - chr8_2:14591981-14592000 Msa1236120:CDS 45.0%
TGAAGTTAGAGGAGAGAGTC+TGG - chr8_2:14592143-14592162 Msa1236120:CDS 45.0%
CTGAATTGGCCAAGGAAGAA+AGG + chr8_2:14592677-14592696 None:intergenic 45.0%
GTATACGCACCAGACTGAAT+TGG + chr8_2:14592691-14592710 None:intergenic 45.0%
ATCTACCTGTCATTGCATCG+AGG - chr8_2:14593008-14593027 Msa1236120:intron 45.0%
GTCCAGAAGTTAGTGACGTT+TGG - chr8_2:14593063-14593082 Msa1236120:intron 45.0%
AAGCTACAAGAAGCGATTCC+TGG - chr8_2:14593354-14593373 Msa1236120:intron 45.0%
ATTATATCCATCCAGGGACC+AGG - chr8_2:14593542-14593561 Msa1236120:CDS 45.0%
TGAAGTTACTACTGAGGCAG+TGG - chr8_2:14593703-14593722 Msa1236120:CDS 45.0%
! CTCAGCAAGGCCACAGATTT+TGG - chr8_2:14591177-14591196 Msa1236120:three_prime_UTR 50.0%
ATAAGCTTCACCTTCGACGG+CGG - chr8_2:14591260-14591279 Msa1236120:three_prime_UTR 50.0%
CAGAATTAAACCGCCGTCGA+AGG + chr8_2:14591273-14591292 None:intergenic 50.0%
CTACTGTTGTCACGCGAACA+TGG + chr8_2:14591309-14591328 None:intergenic 50.0%
! GCAGACATACCCGGTTGATA+TGG + chr8_2:14591332-14591351 None:intergenic 50.0%
GGAGGTGAAGTGGAAGTAAG+GGG + chr8_2:14591516-14591535 None:intergenic 50.0%
GTGGAGGTGAAGTGGAAGTA+AGG + chr8_2:14591518-14591537 None:intergenic 50.0%
TAAGGAAGGTGGAGGTGAAG+TGG + chr8_2:14591526-14591545 None:intergenic 50.0%
ATCCATACACGCTGGGCATA+GGG + chr8_2:14591687-14591706 None:intergenic 50.0%
AATCCATACACGCTGGGCAT+AGG + chr8_2:14591688-14591707 None:intergenic 50.0%
ACGGGTAATCCATACACGCT+GGG + chr8_2:14591694-14591713 None:intergenic 50.0%
TACGGGTAATCCATACACGC+TGG + chr8_2:14591695-14591714 None:intergenic 50.0%
GTTATGGAAGCAGGGATTGC+AGG - chr8_2:14591903-14591922 Msa1236120:intron 50.0%
CTCACACTAGGGTAAAGGGA+GGG + chr8_2:14592204-14592223 None:intergenic 50.0%
TCTCACACTAGGGTAAAGGG+AGG + chr8_2:14592205-14592224 None:intergenic 50.0%
AAAGGAGATGCAACTGAGGC+TGG - chr8_2:14592382-14592401 Msa1236120:intron 50.0%
GATCGAGGACCTTTCTTCCT+TGG - chr8_2:14592665-14592684 Msa1236120:CDS 50.0%
CTTCCTTGGCCAATTCAGTC+TGG - chr8_2:14592679-14592698 Msa1236120:CDS 50.0%
TCAATCCATGCCGTCAGTCT+AGG + chr8_2:14592904-14592923 None:intergenic 50.0%
! TAGACTGACGGCATGGATTG+AGG - chr8_2:14592903-14592922 Msa1236120:intron 50.0%
AACGACCTCGATGCAATGAC+AGG + chr8_2:14593016-14593035 None:intergenic 50.0%
ACTAACTTCTGGACACGCTG+TGG + chr8_2:14593057-14593076 None:intergenic 50.0%
TATGATTCCTGGTCCCTGGA+TGG + chr8_2:14593552-14593571 None:intergenic 50.0%
AGCAGGCAAGCAGACATACC+CGG + chr8_2:14591341-14591360 None:intergenic 55.0%
GTATGTCTGCTTGCCTGCTG+AGG - chr8_2:14591342-14591361 Msa1236120:exon 55.0%
! TCAGCTTAGCTAGCCTCAGC+AGG + chr8_2:14591358-14591377 None:intergenic 55.0%
GAAGTGGAAGTAAGGGGTGG+TGG + chr8_2:14591510-14591529 None:intergenic 55.0%
GGTGAAGTGGAAGTAAGGGG+TGG + chr8_2:14591513-14591532 None:intergenic 55.0%
!! CTGGGCATAGGGGCATTTGT+AGG + chr8_2:14591676-14591695 None:intergenic 55.0%
TCCATACACGCTGGGCATAG+GGG + chr8_2:14591686-14591705 None:intergenic 55.0%
GCACCAGACTGAATTGGCCA+AGG + chr8_2:14592685-14592704 None:intergenic 55.0%
GTCGTATGATTCCTGGTCCC+TGG + chr8_2:14593556-14593575 None:intergenic 55.0%
GGGACCAGGAATCATACGAC+AGG - chr8_2:14593556-14593575 Msa1236120:CDS 55.0%
GGTGCCTGTCGTATGATTCC+TGG + chr8_2:14593563-14593582 None:intergenic 55.0%
AGTGGGCAGGCCTAGACTGA+CGG - chr8_2:14592891-14592910 Msa1236120:CDS 60.0%
GCCCCTATGCCCAGCGTGTA+TGG - chr8_2:14591682-14591701 Msa1236120:intron 65.0%
GCAGGCCTAGACTGACGGCA+TGG - chr8_2:14592896-14592915 Msa1236120:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 14590991 14593839 14590991 ID=Msa1236120;Name=Msa1236120
chr8_2 mRNA 14590991 14593839 14590991 ID=Msa1236120-mRNA-1;Parent=Msa1236120;Name=Msa1236120-mRNA-1;_AED=0.22;_eAED=0.22;_QI=97|1|1|1|1|1|10|366|317
chr8_2 exon 14590991 14591368 14590991 ID=Msa1236120-mRNA-1:exon:5700;Parent=Msa1236120-mRNA-1
chr8_2 exon 14591455 14591535 14591455 ID=Msa1236120-mRNA-1:exon:5699;Parent=Msa1236120-mRNA-1
chr8_2 exon 14591906 14592013 14591906 ID=Msa1236120-mRNA-1:exon:5698;Parent=Msa1236120-mRNA-1
chr8_2 exon 14592130 14592206 14592130 ID=Msa1236120-mRNA-1:exon:5697;Parent=Msa1236120-mRNA-1
chr8_2 exon 14592427 14592526 14592427 ID=Msa1236120-mRNA-1:exon:5696;Parent=Msa1236120-mRNA-1
chr8_2 exon 14592612 14592710 14592612 ID=Msa1236120-mRNA-1:exon:5695;Parent=Msa1236120-mRNA-1
chr8_2 exon 14592828 14592914 14592828 ID=Msa1236120-mRNA-1:exon:5694;Parent=Msa1236120-mRNA-1
chr8_2 exon 14593108 14593168 14593108 ID=Msa1236120-mRNA-1:exon:5693;Parent=Msa1236120-mRNA-1
chr8_2 exon 14593268 14593342 14593268 ID=Msa1236120-mRNA-1:exon:5692;Parent=Msa1236120-mRNA-1
chr8_2 exon 14593489 14593839 14593489 ID=Msa1236120-mRNA-1:exon:5691;Parent=Msa1236120-mRNA-1
chr8_2 five_prime_UTR 14593743 14593839 14593743 ID=Msa1236120-mRNA-1:five_prime_utr;Parent=Msa1236120-mRNA-1
chr8_2 CDS 14593489 14593742 14593489 ID=Msa1236120-mRNA-1:cds;Parent=Msa1236120-mRNA-1
chr8_2 CDS 14593268 14593342 14593268 ID=Msa1236120-mRNA-1:cds;Parent=Msa1236120-mRNA-1
chr8_2 CDS 14593108 14593168 14593108 ID=Msa1236120-mRNA-1:cds;Parent=Msa1236120-mRNA-1
chr8_2 CDS 14592828 14592914 14592828 ID=Msa1236120-mRNA-1:cds;Parent=Msa1236120-mRNA-1
chr8_2 CDS 14592612 14592710 14592612 ID=Msa1236120-mRNA-1:cds;Parent=Msa1236120-mRNA-1
chr8_2 CDS 14592427 14592526 14592427 ID=Msa1236120-mRNA-1:cds;Parent=Msa1236120-mRNA-1
chr8_2 CDS 14592130 14592206 14592130 ID=Msa1236120-mRNA-1:cds;Parent=Msa1236120-mRNA-1
chr8_2 CDS 14591906 14592013 14591906 ID=Msa1236120-mRNA-1:cds;Parent=Msa1236120-mRNA-1
chr8_2 CDS 14591455 14591535 14591455 ID=Msa1236120-mRNA-1:cds;Parent=Msa1236120-mRNA-1
chr8_2 CDS 14591357 14591368 14591357 ID=Msa1236120-mRNA-1:cds;Parent=Msa1236120-mRNA-1
chr8_2 three_prime_UTR 14590991 14591356 14590991 ID=Msa1236120-mRNA-1:three_prime_utr;Parent=Msa1236120-mRNA-1
Gene Sequence

>Msa1236120

ATGAATATTCATTGTCATCATCATATAGGAATTATGGCTATATCATCATCATCATCATCATCATTAACCAATAATAGTTTGTTCTCAGTCTCAGCAAGGCCACAGATTTTGGTTACTTCTTCCCTTCCTTTCATGTCCATATCTGCCATCCATTTCCACTATTCACCTCATAATAAGCTTCACCTTCGACGGCGGTTTAATTCTGTTACAAAATCGTGCCATGTTCGCGTGACAACAGTAGCCATATCAACCGGAAGTGTGCAAGAAGTTCTTCCACCACCCCTTACTTCCACTTCACCTCCACCTTCCTTATTTGATGGAACCACCAGGTTGTATATCTCCTACAAATGCCCCTATGCCCAGCGTGTATGGATTACCCGTAACACTAAGGGATTGCAGGACAAGATACAGTTAGTTCCCATTGATCTACAAGACAGACCTTCTTGGTACAAGGACAAAGTCTATCCACCCAACAAGGTTCCATCTCTTGAACACAATAATGAAGTTAGAGGAGAGAGTCTGGATCTGATTAAATATATTGACACTCACTTTGAAGGACCCTCCCTTTACCCTAGTGGTCCTGATGATAAGGAGTTTGCTGAAGAGTTGCTATCTTACACAGATACATTTTACAAGACAGTTGTTGCTTATTTTAAAGGAGATGCAACTGAGGCTGGCACTGCATTTGATTACCTTGAGACTGTTCTCTCCAAATATGATCGAGGACCTTTCTTCCTTGGCCAATTCAGTCTGGTGGATATAGCATATGCTCCTTTCATGGAAAGATTTCAACCGTTTTTAATGGATGTGAAAAATTATGACATTACAGTGGGCAGGCCTAGACTGACGGCATGGATTGAGGGAATAAACAACATTGAAGGCTACAAAATAACCCGTTCTGATCCTAAGGAGTTAGTTGAAAGCTACAAGAAGCGATTCCTGGCAAATCCATGA

Protein sequence

>Msa1236120

MNIHCHHHIGIMAISSSSSSSLTNNSLFSVSARPQILVTSSLPFMSISAIHFHYSPHNKLHLRRRFNSVTKSCHVRVTTVAISTGSVQEVLPPPLTSTSPPPSLFDGTTRLYISYKCPYAQRVWITRNTKGLQDKIQLVPIDLQDRPSWYKDKVYPPNKVPSLEHNNEVRGESLDLIKYIDTHFEGPSLYPSGPDDKEFAEELLSYTDTFYKTVVAYFKGDATEAGTAFDYLETVLSKYDRGPFFLGQFSLVDIAYAPFMERFQPFLMDVKNYDITVGRPRLTAWIEGINNIEGYKITRSDPKELVESYKKRFLANP*