AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651000 MtrunA17_Chr4g0043331 97.595 291 7 0 1 291 1 291 0.0 581
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651000 AT4G26370.1 68.807 218 65 1 66 283 69 283 4.13e-104 306
Msa0651000 AT4G26370.2 60.000 115 43 1 66 180 69 180 1.76e-35 128
Msa0651000 AT4G26370.3 60.000 115 43 1 66 180 69 180 1.76e-35 128

Find 103 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGTTTGGGAAGGAATT+TGG 0.119074 4_3:-58289474 None:intergenic
TGTTGAACCATTATTATTAT+AGG 0.182688 4_3:+58294312 Msa0651000:three_prime_UTR
TGAAGTAGCGGTGTTAATTT+TGG 0.202201 4_3:-58289492 None:intergenic
TTGGGTTTGGGAAGGAATTT+GGG 0.203019 4_3:-58289473 None:intergenic
ATTTGGAGGCATCAAATAAT+AGG 0.245346 4_3:+58294178 Msa0651000:CDS
ATTTCGTGTACCTGCCAATT+TGG 0.250481 4_3:-58292089 None:intergenic
TTATTATAGGTTTCTGCAAC+TGG 0.299436 4_3:+58294325 Msa0651000:three_prime_UTR
TCATCTGTTTCAACGATAAC+AGG 0.318092 4_3:-58289974 None:intergenic
ACAAAGTTATCCCACCAAAT+TGG 0.319429 4_3:+58292075 Msa0651000:CDS
GCAAAAGCGGTGGTTGAGTT+TGG 0.331587 4_3:-58289408 None:intergenic
AATCTGCTATATACCAGCTT+TGG 0.334078 4_3:-58291752 None:intergenic
TGGTTGCTGTCAGGGATAGA+TGG 0.336054 4_3:+58292030 Msa0651000:CDS
TATAATTTATGCTTCGTGTT+TGG 0.348060 4_3:+58289757 Msa0651000:CDS
GATTTCCCACAAGTTTATTA+CGG 0.351707 4_3:+58294404 Msa0651000:three_prime_UTR
GCAGCCCCTCGTATCATTAA+TGG 0.354885 4_3:+58294132 Msa0651000:CDS
TGCTTCGTGTTTGGAGGGAT+TGG 0.362504 4_3:+58289766 Msa0651000:CDS
AAGAAGCTAATGAACTTCTA+AGG 0.369066 4_3:+58289996 Msa0651000:CDS
AGAGAGCATTTCAGAGATAA+AGG 0.376806 4_3:-58289518 None:intergenic
GCAGAAACCTATAATAATAA+TGG 0.383326 4_3:-58294319 None:intergenic
ATCTGCTATATACCAGCTTT+GGG 0.384978 4_3:-58291751 None:intergenic
ATTTCCCACAAGTTTATTAC+GGG 0.392155 4_3:+58294405 Msa0651000:three_prime_UTR
TTTGGAGGCATCAAATAATA+GGG 0.397760 4_3:+58294179 Msa0651000:CDS
GAGTATAATCACATGAGTTT+CGG 0.405577 4_3:+58289944 Msa0651000:CDS
GTTAATGACGATTTGGTGTC+TGG 0.417195 4_3:-58293804 None:intergenic
GGAAACTATTGGTTGCTGTC+AGG 0.418304 4_3:+58292021 Msa0651000:CDS
GTACCTCGTTAATGACGATT+TGG 0.422385 4_3:-58293811 None:intergenic
GATATGCAATTATTACTAGT+TGG 0.436825 4_3:-58294476 None:intergenic
ATTTAACAAGGACAAATTGT+TGG 0.439004 4_3:+58289922 Msa0651000:CDS
TGGAGGGATTGGACCCGGTT+CGG 0.439014 4_3:+58289777 Msa0651000:CDS
CAGGTTCACTAGGAAACTAT+TGG 0.442129 4_3:+58292010 Msa0651000:intron
AATTTATGCTTCGTGTTTGG+AGG 0.449542 4_3:+58289760 Msa0651000:CDS
AGAAGTTGAAGGTGAAGAGA+GGG 0.454774 4_3:-58289381 None:intergenic
CGTTTCTCAAATAACCGAAC+CGG 0.455058 4_3:-58289791 None:intergenic
GTCTTTGTCGAGTGCTAAAG+TGG 0.463142 4_3:-58289549 None:intergenic
AGGTGAAGAGAGGGGAAGTA+AGG 0.465052 4_3:-58289372 None:intergenic
AAGAAGTTGAAGGTGAAGAG+AGG 0.465590 4_3:-58289382 None:intergenic
GGGATAACTTTGTTAATGAC+AGG 0.468047 4_3:-58292065 None:intergenic
ATTCAACTCGAGTCTGCAAT+TGG 0.472202 4_3:+58290022 Msa0651000:CDS
GCAATTATTACTAGTTGGAT+AGG 0.481035 4_3:-58294471 None:intergenic
TCGTGTACCTGCCAATTTGG+TGG 0.485420 4_3:-58292086 None:intergenic
GTAGGAGTTATGTTTGAAAG+TGG 0.491262 4_3:+58294359 Msa0651000:three_prime_UTR
GAAACTATTGGTTGCTGTCA+GGG 0.496002 4_3:+58292022 Msa0651000:CDS
GTGTTTGGAGGGATTGGACC+CGG 0.500612 4_3:+58289772 Msa0651000:CDS
CGTGTACCTGCCAATTTGGT+GGG 0.500976 4_3:-58292085 None:intergenic
TTGCCTAAACTCGATAAAAC+CGG 0.503153 4_3:+58289614 Msa0651000:CDS
AGAGCTTTCTATTCTTCACT+TGG 0.503711 4_3:+58293754 Msa0651000:CDS
GCATCCCGTAATAAACTTGT+GGG 0.507291 4_3:-58294409 None:intergenic
TGGTGGTTTAGTAGTGAAGA+GGG 0.509590 4_3:-58289434 None:intergenic
TAACTTATCAGACCAGCATA+GGG 0.513184 4_3:-58294283 None:intergenic
GGAAGTGAGAGTAGCGGTGG+TGG 0.515094 4_3:-58289451 None:intergenic
CTAACTTATCAGACCAGCAT+AGG 0.518019 4_3:-58294284 None:intergenic
CGGTTCGGTTATTTGAGAAA+CGG 0.523373 4_3:+58289792 Msa0651000:CDS
AGCTCTAAAATCTTCCCTGC+TGG 0.524497 4_3:-58293737 None:intergenic
AGGCGGTGGATCTGGCTAAA+CGG 0.525821 4_3:+58294097 Msa0651000:intron
ATTTATGCTTCGTGTTTGGA+GGG 0.526272 4_3:+58289761 Msa0651000:CDS
TGCATCCCGTAATAAACTTG+TGG 0.533013 4_3:-58294410 None:intergenic
CTGGCTAAACGGTTCTGTGA+TGG 0.535411 4_3:+58294108 Msa0651000:CDS
GCAAGTTCTCTAGCGGCTCT+CGG 0.536127 4_3:-58289650 None:intergenic
TATTTGATGCCTCCAAATCT+CGG 0.536490 4_3:-58294173 None:intergenic
AGTTTGGAAGAAGAAGTTGA+AGG 0.542605 4_3:-58289392 None:intergenic
TTGAGTAATATCCCCTATGC+TGG 0.546544 4_3:+58294271 Msa0651000:three_prime_UTR
GTCATATCTGCAGGTTCACT+AGG 0.549643 4_3:+58292000 Msa0651000:intron
GGTTGCTGTCAGGGATAGAT+GGG 0.555102 4_3:+58292031 Msa0651000:CDS
TCTACTCCACACTTCAACAA+TGG 0.555760 4_3:+58289343 Msa0651000:exon
GCATTTCAGGAAGAACCAGC+AGG 0.561165 4_3:+58293722 Msa0651000:intron
TGGTTGATGAACTTTAGTCT+TGG 0.562941 4_3:+58294379 Msa0651000:three_prime_UTR
CTCCCTCCATTGTTGAAGTG+TGG 0.566513 4_3:-58289349 None:intergenic
CTGCTATATACCAGCTTTGG+GGG 0.567625 4_3:-58291749 None:intergenic
GAAGTTGAAGGTGAAGAGAG+GGG 0.577370 4_3:-58289380 None:intergenic
TATTATAGGTTTCTGCAACT+GGG 0.582646 4_3:+58294326 Msa0651000:three_prime_UTR
AGTTATCCCACCAAATTGGC+AGG 0.586746 4_3:+58292079 Msa0651000:CDS
GATTGTTGAAAATATTGATG+TGG 0.586916 4_3:+58294246 Msa0651000:three_prime_UTR
TATAATCACATGAGTTTCGG+AGG 0.587444 4_3:+58289947 Msa0651000:CDS
CTCCACACTTCAACAATGGA+GGG 0.590137 4_3:+58289347 Msa0651000:exon
AGTGTGGAGTAGATAGATAA+CGG 0.591828 4_3:-58289333 None:intergenic
GTGGTGGTTTAGTAGTGAAG+AGG 0.591941 4_3:-58289435 None:intergenic
TGGGTTTGGGAAGGAATTTG+GGG 0.610576 4_3:-58289472 None:intergenic
ACTCCACACTTCAACAATGG+AGG 0.611176 4_3:+58289346 Msa0651000:exon
TGGGGAAGTGAGAGTAGCGG+TGG 0.615693 4_3:-58289454 None:intergenic
CAACTGGGAAGATCATAAGT+AGG 0.620936 4_3:+58294341 Msa0651000:three_prime_UTR
GTGAAGAGGGGAAGCAAAAG+CGG 0.626097 4_3:-58289421 None:intergenic
GGTGGTTTAGTAGTGAAGAG+GGG 0.629211 4_3:-58289433 None:intergenic
GACAGCCATTAATGATACGA+GGG 0.631693 4_3:-58294137 None:intergenic
GGTTGGTTATGAATTTAACA+AGG 0.642550 4_3:+58289910 Msa0651000:CDS
TCTGCTATATACCAGCTTTG+GGG 0.649992 4_3:-58291750 None:intergenic
TCTGTTTCAACGATAACAGG+TGG 0.649999 4_3:-58289971 None:intergenic
ATTTGGGGAAGTGAGAGTAG+CGG 0.651966 4_3:-58289457 None:intergenic
GGATAACTTTGTTAATGACA+GGG 0.657385 4_3:-58292064 None:intergenic
AGATAAAGGTGATGAAGTAG+CGG 0.660310 4_3:-58289504 None:intergenic
TCTCGGACTACAAAACCGAC+CGG 0.664343 4_3:-58289633 None:intergenic
ATAATCACATGAGTTTCGGA+GGG 0.671556 4_3:+58289948 Msa0651000:CDS
TTACAGAGCAAGTTCTCTAG+CGG 0.672676 4_3:-58289657 None:intergenic
GTTTCTCAAATAACCGAACC+GGG 0.676933 4_3:-58289790 None:intergenic
CATTTCAGGAAGAACCAGCA+GGG 0.678311 4_3:+58293723 Msa0651000:intron
TCTCTGAAATGCTCTCTCCG+TGG 0.679129 4_3:+58289524 Msa0651000:CDS
AGACAGCCATTAATGATACG+AGG 0.681753 4_3:-58294138 None:intergenic
AAACGGATGAATGAGCGTAG+AGG 0.681961 4_3:+58289809 Msa0651000:CDS
AACTTATCAGACCAGCATAG+GGG 0.689195 4_3:-58294282 None:intergenic
CTAAACTCGATAAAACCGGT+CGG 0.694768 4_3:+58289618 Msa0651000:CDS
CGAGTGCTAAAGTGGAACCA+CGG 0.698369 4_3:-58289541 None:intergenic
AAGAGGGGAAGCAAAAGCGG+TGG 0.698794 4_3:-58289418 None:intergenic
ACAGCCATTAATGATACGAG+GGG 0.715241 4_3:-58294136 None:intergenic
ACACCAAATCGTCATTAACG+AGG 0.730395 4_3:+58293808 Msa0651000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATCTTTTAAAAAATTCA+TGG - chr4_3:58290747-58290766 None:intergenic 10.0%
!!! ATTTATAGTGATTTTTATAT+TGG + chr4_3:58291306-58291325 Msa0651000:intron 10.0%
!! ATAATAAAAACAAAAAATTG+GGG - chr4_3:58293398-58293417 None:intergenic 10.0%
!! CAATAATAAAAACAAAAAAT+TGG - chr4_3:58293400-58293419 None:intergenic 10.0%
!!! CAATTTTTTGTTTTTATTAT+TGG + chr4_3:58293398-58293417 Msa0651000:intron 10.0%
!!! CTTTTTATTTTTATTTTTGT+AGG + chr4_3:58293858-58293877 Msa0651000:intron 10.0%
!! TCATTACTAATATATATGAT+TGG + chr4_3:58290123-58290142 Msa0651000:intron 15.0%
!!! TTAATTAAAACATTTTAAGC+TGG - chr4_3:58290474-58290493 None:intergenic 15.0%
!!! TAGTTATAAGGATTAATTTT+GGG - chr4_3:58290506-58290525 None:intergenic 15.0%
!! TTCTTGATTCAAATTAAATT+TGG - chr4_3:58290772-58290791 None:intergenic 15.0%
!! AGAAAATCATATTGTAATTA+GGG - chr4_3:58290941-58290960 None:intergenic 15.0%
!! AAGAAAATCATATTGTAATT+AGG - chr4_3:58290942-58290961 None:intergenic 15.0%
!! AATGTATGATTAATTGATTA+TGG + chr4_3:58291540-58291559 Msa0651000:intron 15.0%
!!! TATCTTATTTCATAGATTTT+TGG + chr4_3:58292186-58292205 Msa0651000:intron 15.0%
!! TAATAGAATATTGGAAATTT+AGG + chr4_3:58292917-58292936 Msa0651000:intron 15.0%
!!! TTGTTTTTATTATTGGATAA+TGG + chr4_3:58293405-58293424 Msa0651000:intron 15.0%
!!! ATATACATTTGTTAATTATG+TGG + chr4_3:58293539-58293558 Msa0651000:intron 15.0%
!! ATAAAAAAACTTATATACTG+TGG + chr4_3:58294060-58294079 Msa0651000:intron 15.0%
!!! TTTCATTTGTTAATTGATTG+AGG + chr4_3:58290222-58290241 Msa0651000:intron 20.0%
!!! GTAGTTATAAGGATTAATTT+TGG - chr4_3:58290507-58290526 None:intergenic 20.0%
!! AATTAATCCTTATAACTACT+TGG + chr4_3:58290508-58290527 Msa0651000:intron 20.0%
!! ATTAATCCTTATAACTACTT+GGG + chr4_3:58290509-58290528 Msa0651000:intron 20.0%
!! AAACCTAAAAAAACCATAAT+TGG - chr4_3:58291072-58291091 None:intergenic 20.0%
!!! ACTATAAATTTTTGTTCTCA+TGG - chr4_3:58291295-58291314 None:intergenic 20.0%
!!! ATTGTTCTGTTTTCATTTTA+CGG + chr4_3:58291451-58291470 Msa0651000:intron 20.0%
!! ATTTATACAGACTTTAATAC+AGG + chr4_3:58291496-58291515 Msa0651000:intron 20.0%
!! TGAAATTATGTGACATAATA+AGG - chr4_3:58291599-58291618 None:intergenic 20.0%
!!! GAACTTTGAAATTCTAATTA+TGG - chr4_3:58292356-58292375 None:intergenic 20.0%
!!! AAAATAATAATGAGGTACTA+AGG - chr4_3:58292659-58292678 None:intergenic 20.0%
!! TGGTACTAAAAATAATAATG+AGG - chr4_3:58292667-58292686 None:intergenic 20.0%
!!! TATTATTTTTAGTACCAAAC+AGG + chr4_3:58292670-58292689 Msa0651000:intron 20.0%
!!! ATTATTTTTAGTACCAAACA+GGG + chr4_3:58292671-58292690 Msa0651000:intron 20.0%
!! ATCATTAAACAGTTATTGTT+GGG + chr4_3:58292868-58292887 Msa0651000:intron 20.0%
!! AGAATAAGAATGAAACTATT+TGG - chr4_3:58292949-58292968 None:intergenic 20.0%
!! TTAAACCAGTAAAAATACAA+AGG - chr4_3:58293288-58293307 None:intergenic 20.0%
!! AAAATGTTTATCAAATGTCA+AGG + chr4_3:58293454-58293473 Msa0651000:intron 20.0%
!! CATTATCATTACGTAAAATT+TGG - chr4_3:58293511-58293530 None:intergenic 20.0%
!!! TTTTTATTTTTGTAGGTGTT+AGG + chr4_3:58293865-58293884 Msa0651000:intron 20.0%
!!! TTTTATTTTTGTAGGTGTTA+GGG + chr4_3:58293866-58293885 Msa0651000:intron 20.0%
!!! ATGTCAATATTTTCTACTAT+TGG + chr4_3:58293914-58293933 Msa0651000:intron 20.0%
!! TGTTGAACCATTATTATTAT+AGG + chr4_3:58294312-58294331 Msa0651000:three_prime_UTR 20.0%
!!! AGCATTATTTTCAAAATTCA+AGG + chr4_3:58294448-58294467 Msa0651000:three_prime_UTR 20.0%
!!! GTGTACTGAATTTTAGTATT+TGG + chr4_3:58289701-58289720 Msa0651000:intron 25.0%
!! GTATTTGGAATTAACGTTAA+CGG + chr4_3:58289716-58289735 Msa0651000:intron 25.0%
! TATAATTTATGCTTCGTGTT+TGG + chr4_3:58289757-58289776 Msa0651000:CDS 25.0%
!!! ATTGTTAACTGTTTTGGTTT+TGG + chr4_3:58289834-58289853 Msa0651000:intron 25.0%
!!! AATGTGTTTGTTTGTTATAG+AGG + chr4_3:58289889-58289908 Msa0651000:intron 25.0%
! ATTTAACAAGGACAAATTGT+TGG + chr4_3:58289922-58289941 Msa0651000:CDS 25.0%
! TGCTCAAATTTGAACTTAAT+TGG + chr4_3:58290160-58290179 Msa0651000:intron 25.0%
!!! ATTTGAACTTAATTGGTCTT+TGG + chr4_3:58290167-58290186 Msa0651000:intron 25.0%
! ATCGGTCATTTCTTTATATA+TGG + chr4_3:58290197-58290216 Msa0651000:intron 25.0%
! ATAATCCAAGTTCTATATGT+CGG - chr4_3:58290879-58290898 None:intergenic 25.0%
! AATCATATTGTAATTAGGGA+AGG - chr4_3:58290937-58290956 None:intergenic 25.0%
! TTTATATGTAGTGTACTGAA+TGG - chr4_3:58291153-58291172 None:intergenic 25.0%
! TTAATCTGTCATAGATATAC+AGG - chr4_3:58291477-58291496 None:intergenic 25.0%
! ATTATGTGACATAATAAGGA+AGG - chr4_3:58291595-58291614 None:intergenic 25.0%
! AGAATATAACAAGTCACAAA+AGG - chr4_3:58291697-58291716 None:intergenic 25.0%
!!! TATATAGCAGATTGATTTTG+AGG + chr4_3:58291762-58291781 Msa0651000:CDS 25.0%
! ATGCATGCATTATATGTAAA+GGG - chr4_3:58291798-58291817 None:intergenic 25.0%
! AAATGTTAGAAATGTTAGTG+AGG + chr4_3:58291924-58291943 Msa0651000:intron 25.0%
! AATGTTAGAAATGTTAGTGA+GGG + chr4_3:58291925-58291944 Msa0651000:intron 25.0%
!! ATCTATTGCTTCATTTTGTT+CGG - chr4_3:58292153-58292172 None:intergenic 25.0%
! AAAGTAGTCATTATAAAGCT+TGG - chr4_3:58292259-58292278 None:intergenic 25.0%
!! AAGCTTTATAATGACTACTT+TGG + chr4_3:58292258-58292277 Msa0651000:intron 25.0%
! TAATTATGGCATTGTTTCAA+AGG - chr4_3:58292342-58292361 None:intergenic 25.0%
! ATTGTTCAAGATAATGTGTA+AGG - chr4_3:58292497-58292516 None:intergenic 25.0%
!! TTAGGGATTATATCCTATTT+TGG - chr4_3:58292743-58292762 None:intergenic 25.0%
!!! TGATTTGTTAGTTGTTACTT+AGG - chr4_3:58292768-58292787 None:intergenic 25.0%
!!! AGTGTTTTGTTGGATTTATT+GGG + chr4_3:58292845-58292864 Msa0651000:intron 25.0%
! GATCATTAAACAGTTATTGT+TGG + chr4_3:58292867-58292886 Msa0651000:intron 25.0%
! ACGATGAGTTAATAGAATAT+TGG + chr4_3:58292908-58292927 Msa0651000:intron 25.0%
! AGAAACAATCAACCTAAAAA+TGG - chr4_3:58293205-58293224 None:intergenic 25.0%
! TGTTTCTCAAATTGTCTTAT+CGG + chr4_3:58293218-58293237 Msa0651000:intron 25.0%
!!! AGATACCTTTGTATTTTTAC+TGG + chr4_3:58293280-58293299 Msa0651000:intron 25.0%
! ATAAAAACAAAAAATTGGGG+TGG - chr4_3:58293395-58293414 None:intergenic 25.0%
! TAAAATTATACAAGTGTGAG+TGG - chr4_3:58293648-58293667 None:intergenic 25.0%
!! TAGACAACTTTGTTTGTTAA+TGG + chr4_3:58293673-58293692 Msa0651000:intron 25.0%
! AACAAACAATATGCATACTA+TGG - chr4_3:58293699-58293718 None:intergenic 25.0%
! ATAGTATGCATATTGTTTGT+TGG + chr4_3:58293698-58293717 Msa0651000:intron 25.0%
!!! TTTATTTTTGTAGGTGTTAG+GGG + chr4_3:58293867-58293886 Msa0651000:intron 25.0%
! GATTGTTGAAAATATTGATG+TGG + chr4_3:58294246-58294265 Msa0651000:three_prime_UTR 25.0%
! GCAGAAACCTATAATAATAA+TGG - chr4_3:58294322-58294341 None:intergenic 25.0%
! GATATGCAATTATTACTAGT+TGG - chr4_3:58294479-58294498 None:intergenic 25.0%
! GAGGTAATTGTTAACTGTTT+TGG + chr4_3:58289828-58289847 Msa0651000:intron 30.0%
!! TGTTTGTTTGTTATAGAGGT+TGG + chr4_3:58289893-58289912 Msa0651000:intron 30.0%
! GGTTGGTTATGAATTTAACA+AGG + chr4_3:58289910-58289929 Msa0651000:CDS 30.0%
GAGTATAATCACATGAGTTT+CGG + chr4_3:58289944-58289963 Msa0651000:CDS 30.0%
AAGAAGCTAATGAACTTCTA+AGG + chr4_3:58289996-58290015 Msa0651000:CDS 30.0%
!! TTGGTCTTTGGAATGAAAAT+CGG + chr4_3:58290179-58290198 Msa0651000:intron 30.0%
AGCTTCACTAGAAAAGTTTA+TGG + chr4_3:58290255-58290274 Msa0651000:intron 30.0%
ATGTCCAAATGAATAAGACT+TGG + chr4_3:58290313-58290332 Msa0651000:intron 30.0%
TGTCCAAATGAATAAGACTT+GGG + chr4_3:58290314-58290333 Msa0651000:intron 30.0%
! TAAAACATTTTAAGCTGGTG+TGG - chr4_3:58290469-58290488 None:intergenic 30.0%
GAAAATCAACAAAGCAAAGA+GGG - chr4_3:58290596-58290615 None:intergenic 30.0%
TGAAAATCAACAAAGCAAAG+AGG - chr4_3:58290597-58290616 None:intergenic 30.0%
! AACTTATAATGACTGGTTGT+GGG - chr4_3:58290677-58290696 None:intergenic 30.0%
CTGTTTATACATGACACATA+TGG + chr4_3:58290807-58290826 Msa0651000:intron 30.0%
ACGACAGTTAACAATTACTA+CGG - chr4_3:58290843-58290862 None:intergenic 30.0%
TTTAACCGACATATAGAACT+TGG + chr4_3:58290871-58290890 Msa0651000:intron 30.0%
ACTATTAAGCGTGTGATAAA+TGG - chr4_3:58290967-58290986 None:intergenic 30.0%
!!! TGGCCAATTATGGTTTTTTT+AGG + chr4_3:58291066-58291085 Msa0651000:intron 30.0%
TATAAATTGAACTCCTTGTG+TGG + chr4_3:58291167-58291186 Msa0651000:intron 30.0%
! CAACATCAAACTTTTTACCT+TGG + chr4_3:58291232-58291251 Msa0651000:intron 30.0%
AAAGTTTGATGTTGTCTCAT+GGG - chr4_3:58291260-58291279 None:intergenic 30.0%
AAAAGTTTGATGTTGTCTCA+TGG - chr4_3:58291261-58291280 None:intergenic 30.0%
! CAACATCAAACTTTTTACCT+TGG + chr4_3:58291232-58291251 Msa0651000:intron 30.0%
AGCAATTTGATGTTGTAAGT+TGG + chr4_3:58291355-58291374 Msa0651000:intron 30.0%
TCCTTAGAACTACTACTTTA+AGG - chr4_3:58291381-58291400 None:intergenic 30.0%
!! TTAAAGTAGTAGTTCTAAGG+AGG + chr4_3:58291380-58291399 Msa0651000:intron 30.0%
!! TAAAGTAGTAGTTCTAAGGA+GGG + chr4_3:58291381-58291400 Msa0651000:intron 30.0%
GATGCATGCATTATATGTAA+AGG - chr4_3:58291799-58291818 None:intergenic 30.0%
ATGTTAGAAATGTTAGTGAG+GGG + chr4_3:58291926-58291945 Msa0651000:intron 30.0%
! TATTAGCTTCCATTGGAATA+AGG - chr4_3:58291968-58291987 None:intergenic 30.0%
GGATAACTTTGTTAATGACA+GGG - chr4_3:58292067-58292086 None:intergenic 30.0%
!! CTAACTCAGAATTTTGAGTA+GGG - chr4_3:58292217-58292236 None:intergenic 30.0%
! TGCCACATTGACTAAAAATA+TGG - chr4_3:58292284-58292303 None:intergenic 30.0%
AAAGGATGATAAAGATAGCA+GGG - chr4_3:58292324-58292343 None:intergenic 30.0%
! AGACATAATTTGTCTAGAGT+TGG + chr4_3:58292386-58292405 Msa0651000:intron 30.0%
! GACATAATTTGTCTAGAGTT+GGG + chr4_3:58292387-58292406 Msa0651000:intron 30.0%
CTGTTCAACCTAAATTTACA+AGG + chr4_3:58292439-58292458 Msa0651000:intron 30.0%
GCATATAAAACCAAAGTCAA+AGG - chr4_3:58292594-58292613 None:intergenic 30.0%
! TTATATGCTCTCTGAAGAAA+AGG + chr4_3:58292606-58292625 Msa0651000:intron 30.0%
! AATAATGAGGTACTAAGGAT+GGG - chr4_3:58292654-58292673 None:intergenic 30.0%
! TAATAATGAGGTACTAAGGA+TGG - chr4_3:58292655-58292674 None:intergenic 30.0%
AGAATAGGGTTACCTTAATA+AGG - chr4_3:58292702-58292721 None:intergenic 30.0%
TCTCATTCCAGTATAGAATA+GGG - chr4_3:58292716-58292735 None:intergenic 30.0%
ATCTCATTCCAGTATAGAAT+AGG - chr4_3:58292717-58292736 None:intergenic 30.0%
GGAATGAGATAATCCAAAAT+AGG + chr4_3:58292727-58292746 Msa0651000:intron 30.0%
! TAGTTGTTACTTAGGAGTTA+GGG - chr4_3:58292760-58292779 None:intergenic 30.0%
! TTAGTTGTTACTTAGGAGTT+AGG - chr4_3:58292761-58292780 None:intergenic 30.0%
AACCTTAATTACTGATCAGT+TGG + chr4_3:58292790-58292809 Msa0651000:intron 30.0%
GATCATGTTGGAAATAGTAA+TGG + chr4_3:58292817-58292836 Msa0651000:intron 30.0%
!! AATGGTATTGAGTGTTTTGT+TGG + chr4_3:58292835-58292854 Msa0651000:intron 30.0%
!! GAGTGTTTTGTTGGATTTAT+TGG + chr4_3:58292844-58292863 Msa0651000:intron 30.0%
TAAATGCAGTTAAATTCAGC+CGG + chr4_3:58292999-58293018 Msa0651000:intron 30.0%
!! TACAGTACACTACCATTTTT+AGG + chr4_3:58293190-58293209 Msa0651000:intron 30.0%
TTATCGGTCATCTAGTATAT+TGG + chr4_3:58293234-58293253 Msa0651000:intron 30.0%
!! ATAATGGATATGCGTACATA+AGG + chr4_3:58293421-58293440 Msa0651000:intron 30.0%
TAAATAGTTACAAGCAGTGA+GGG - chr4_3:58293590-58293609 None:intergenic 30.0%
ATAAATAGTTACAAGCAGTG+AGG - chr4_3:58293591-58293610 None:intergenic 30.0%
! GAGCTATATTTTCTGCTTAA+TGG - chr4_3:58293965-58293984 None:intergenic 30.0%
! AAGCAGAAAATATAGCTCTA+AGG + chr4_3:58293967-58293986 Msa0651000:intron 30.0%
!! AGCAGAAAATATAGCTCTAA+GGG + chr4_3:58293968-58293987 Msa0651000:intron 30.0%
!! ATTTGGAGGCATCAAATAAT+AGG + chr4_3:58294178-58294197 Msa0651000:CDS 30.0%
!! TTTGGAGGCATCAAATAATA+GGG + chr4_3:58294179-58294198 Msa0651000:CDS 30.0%
TTATTATAGGTTTCTGCAAC+TGG + chr4_3:58294325-58294344 Msa0651000:three_prime_UTR 30.0%
TATTATAGGTTTCTGCAACT+GGG + chr4_3:58294326-58294345 Msa0651000:three_prime_UTR 30.0%
GATTTCCCACAAGTTTATTA+CGG + chr4_3:58294404-58294423 Msa0651000:three_prime_UTR 30.0%
ATTTCCCACAAGTTTATTAC+GGG + chr4_3:58294405-58294424 Msa0651000:three_prime_UTR 30.0%
GCAATTATTACTAGTTGGAT+AGG - chr4_3:58294474-58294493 None:intergenic 30.0%
AGTGTGGAGTAGATAGATAA+CGG - chr4_3:58289336-58289355 None:intergenic 35.0%
AGTTTGGAAGAAGAAGTTGA+AGG - chr4_3:58289395-58289414 None:intergenic 35.0%
!!! TGTTAATTTTGGGTTTGGGA+AGG - chr4_3:58289484-58289503 None:intergenic 35.0%
!! GAAGTAGCGGTGTTAATTTT+GGG - chr4_3:58289494-58289513 None:intergenic 35.0%
!! TGAAGTAGCGGTGTTAATTT+TGG - chr4_3:58289495-58289514 None:intergenic 35.0%
AGATAAAGGTGATGAAGTAG+CGG - chr4_3:58289507-58289526 None:intergenic 35.0%
!! AGAGAGCATTTCAGAGATAA+AGG - chr4_3:58289521-58289540 None:intergenic 35.0%
TTGCCTAAACTCGATAAAAC+CGG + chr4_3:58289614-58289633 Msa0651000:CDS 35.0%
!! TTAACGGTCTTTGATTTTGC+AGG + chr4_3:58289732-58289751 Msa0651000:intron 35.0%
AATTTATGCTTCGTGTTTGG+AGG + chr4_3:58289760-58289779 Msa0651000:CDS 35.0%
ATTTATGCTTCGTGTTTGGA+GGG + chr4_3:58289761-58289780 Msa0651000:CDS 35.0%
!!! GTTTTGGTTTTGGTTGTTGT+TGG + chr4_3:58289844-58289863 Msa0651000:intron 35.0%
! TTTGGTTGTTGTTGGTATTG+TGG + chr4_3:58289852-58289871 Msa0651000:intron 35.0%
TATAATCACATGAGTTTCGG+AGG + chr4_3:58289947-58289966 Msa0651000:CDS 35.0%
ATAATCACATGAGTTTCGGA+GGG + chr4_3:58289948-58289967 Msa0651000:CDS 35.0%
TCATCTGTTTCAACGATAAC+AGG - chr4_3:58289977-58289996 None:intergenic 35.0%
!! AGTCCCAAGTCTTATTCATT+TGG - chr4_3:58290320-58290339 None:intergenic 35.0%
AATGAATAAGACTTGGGACT+AGG + chr4_3:58290320-58290339 Msa0651000:intron 35.0%
ATGAATAAGACTTGGGACTA+GGG + chr4_3:58290321-58290340 Msa0651000:intron 35.0%
ATGAAACTGTAGTTGTGTTG+CGG + chr4_3:58290351-58290370 Msa0651000:intron 35.0%
! GTGTAAAACTGTTTTACTCC+AGG - chr4_3:58290407-58290426 None:intergenic 35.0%
AGATAATATCGGATGGTGAT+TGG - chr4_3:58290436-58290455 None:intergenic 35.0%
GTGTGGCAAAGAGATAATAT+CGG - chr4_3:58290447-58290466 None:intergenic 35.0%
AGTAGACCCAAGTAGTTATA+AGG - chr4_3:58290518-58290537 None:intergenic 35.0%
! ACTTGGGTCTACTGTATTTT+TGG + chr4_3:58290525-58290544 Msa0651000:intron 35.0%
TGAAAACGACACAGCAAATA+GGG - chr4_3:58290567-58290586 None:intergenic 35.0%
! CAACTTATAATGACTGGTTG+TGG - chr4_3:58290678-58290697 None:intergenic 35.0%
TGCTGACAACTTATAATGAC+TGG - chr4_3:58290684-58290703 None:intergenic 35.0%
ATTATAAGTTGTCAGCAGCA+CGG + chr4_3:58290687-58290706 Msa0651000:intron 35.0%
AGTTAACAATTACTACGGAG+GGG - chr4_3:58290838-58290857 None:intergenic 35.0%
CAGTTAACAATTACTACGGA+GGG - chr4_3:58290839-58290858 None:intergenic 35.0%
ACAGTTAACAATTACTACGG+AGG - chr4_3:58290840-58290859 None:intergenic 35.0%
GTAACATCTCCATAATCACT+AGG + chr4_3:58290992-58291011 Msa0651000:intron 35.0%
! TTTTGTTCTCATGGTTACCA+AGG - chr4_3:58291286-58291305 None:intergenic 35.0%
! GCCTTAAAGTAGTAGTTCTA+AGG + chr4_3:58291377-58291396 Msa0651000:intron 35.0%
!! AAAGTAGTAGTTCTAAGGAG+GGG + chr4_3:58291382-58291401 Msa0651000:intron 35.0%
! AACCAAGTCAAAACTTTTCC+TGG - chr4_3:58291640-58291659 None:intergenic 35.0%
ATCTGCTATATACCAGCTTT+GGG - chr4_3:58291754-58291773 None:intergenic 35.0%
AATCTGCTATATACCAGCTT+TGG - chr4_3:58291755-58291774 None:intergenic 35.0%
! GCTAGATTATTAGCTTCCAT+TGG - chr4_3:58291975-58291994 None:intergenic 35.0%
GGGATAACTTTGTTAATGAC+AGG - chr4_3:58292068-58292087 None:intergenic 35.0%
ACAAAGTTATCCCACCAAAT+TGG + chr4_3:58292075-58292094 Msa0651000:CDS 35.0%
!! CCTAACTCAGAATTTTGAGT+AGG - chr4_3:58292218-58292237 None:intergenic 35.0%
CCTACTCAAAATTCTGAGTT+AGG + chr4_3:58292215-58292234 Msa0651000:intron 35.0%
TCAAAATTCTGAGTTAGGTC+TGG + chr4_3:58292220-58292239 Msa0651000:intron 35.0%
!!! GGCCATATTTTTAGTCAATG+TGG + chr4_3:58292279-58292298 Msa0651000:intron 35.0%
AGATAGCAGGGGTTAAATAA+TGG - chr4_3:58292312-58292331 None:intergenic 35.0%
AAGGATGATAAAGATAGCAG+GGG - chr4_3:58292323-58292342 None:intergenic 35.0%
CAAAGGATGATAAAGATAGC+AGG - chr4_3:58292325-58292344 None:intergenic 35.0%
GTCTCAGACCTTGTAAATTT+AGG - chr4_3:58292450-58292469 None:intergenic 35.0%
GTGTAAGGAAAAGACATAAC+AGG - chr4_3:58292482-58292501 None:intergenic 35.0%
AATAAAAGTCTCTTCCCACT+AGG + chr4_3:58292514-58292533 Msa0651000:intron 35.0%
! AAACCTTTTTGTCACCTAGT+GGG - chr4_3:58292531-58292550 None:intergenic 35.0%
! AAAACCTTTTTGTCACCTAG+TGG - chr4_3:58292532-58292551 None:intergenic 35.0%
! ACTAAGGATGGGTTTATGTT+AGG - chr4_3:58292643-58292662 None:intergenic 35.0%
! TAATAAGGTGTTTCCCTGTT+TGG - chr4_3:58292687-58292706 None:intergenic 35.0%
AACAGGGAAACACCTTATTA+AGG + chr4_3:58292687-58292706 Msa0651000:intron 35.0%
AAGGTAACCCTATTCTATAC+TGG + chr4_3:58292706-58292725 Msa0651000:intron 35.0%
CACCAACTGATCAGTAATTA+AGG - chr4_3:58292795-58292814 None:intergenic 35.0%
AGTTGGAATTCTCTTTGACT+TGG - chr4_3:58293344-58293363 None:intergenic 35.0%
TTCCAACTAAAGTTCGAGTA+TGG + chr4_3:58293356-58293375 Msa0651000:intron 35.0%
ATTATACAAGTGTGAGTGGA+GGG - chr4_3:58293644-58293663 None:intergenic 35.0%
AATTATACAAGTGTGAGTGG+AGG - chr4_3:58293645-58293664 None:intergenic 35.0%
! ATTGTTTGTTGGTGCATTTC+AGG + chr4_3:58293709-58293728 Msa0651000:intron 35.0%
AGAGCTTTCTATTCTTCACT+TGG + chr4_3:58293754-58293773 Msa0651000:CDS 35.0%
!!! CTGTGGTATGTTTGTTTTGA+AGG + chr4_3:58294077-58294096 Msa0651000:intron 35.0%
!!! TGGTATGTTTGTTTTGAAGG+CGG + chr4_3:58294080-58294099 Msa0651000:intron 35.0%
TATTTGATGCCTCCAAATCT+CGG - chr4_3:58294176-58294195 None:intergenic 35.0%
TAACTTATCAGACCAGCATA+GGG - chr4_3:58294286-58294305 None:intergenic 35.0%
GTAGGAGTTATGTTTGAAAG+TGG + chr4_3:58294359-58294378 Msa0651000:three_prime_UTR 35.0%
!! TGGTTGATGAACTTTAGTCT+TGG + chr4_3:58294379-58294398 Msa0651000:three_prime_UTR 35.0%
TCTACTCCACACTTCAACAA+TGG + chr4_3:58289343-58289362 Msa0651000:exon 40.0%
AGAAGTTGAAGGTGAAGAGA+GGG - chr4_3:58289384-58289403 None:intergenic 40.0%
AAGAAGTTGAAGGTGAAGAG+AGG - chr4_3:58289385-58289404 None:intergenic 40.0%
TGGTGGTTTAGTAGTGAAGA+GGG - chr4_3:58289437-58289456 None:intergenic 40.0%
TTGGGTTTGGGAAGGAATTT+GGG - chr4_3:58289476-58289495 None:intergenic 40.0%
! TTTGGGTTTGGGAAGGAATT+TGG - chr4_3:58289477-58289496 None:intergenic 40.0%
!!! GCGGTGTTAATTTTGGGTTT+GGG - chr4_3:58289488-58289507 None:intergenic 40.0%
!!! AGCGGTGTTAATTTTGGGTT+TGG - chr4_3:58289489-58289508 None:intergenic 40.0%
CTAAACTCGATAAAACCGGT+CGG + chr4_3:58289618-58289637 Msa0651000:CDS 40.0%
TTACAGAGCAAGTTCTCTAG+CGG - chr4_3:58289660-58289679 None:intergenic 40.0%
GTTTCTCAAATAACCGAACC+GGG - chr4_3:58289793-58289812 None:intergenic 40.0%
CGTTTCTCAAATAACCGAAC+CGG - chr4_3:58289794-58289813 None:intergenic 40.0%
!! CGGTTCGGTTATTTGAGAAA+CGG + chr4_3:58289792-58289811 Msa0651000:CDS 40.0%
TCTGTTTCAACGATAACAGG+TGG - chr4_3:58289974-58289993 None:intergenic 40.0%
ATTCAACTCGAGTCTGCAAT+TGG + chr4_3:58290022-58290041 Msa0651000:CDS 40.0%
TGAATAAGACTTGGGACTAG+GGG + chr4_3:58290322-58290341 Msa0651000:intron 40.0%
GGCAAAGAGATAATATCGGA+TGG - chr4_3:58290443-58290462 None:intergenic 40.0%
GAAAACGACACAGCAAATAG+GGG - chr4_3:58290566-58290585 None:intergenic 40.0%
GTGAAAACGACACAGCAAAT+AGG - chr4_3:58290568-58290587 None:intergenic 40.0%
AATCAACAAAGCAAAGAGGG+AGG - chr4_3:58290593-58290612 None:intergenic 40.0%
! TAATGACTGGTTGTGGGTAA+TGG - chr4_3:58290671-58290690 None:intergenic 40.0%
TTATAAGTTGTCAGCAGCAC+GGG + chr4_3:58290688-58290707 Msa0651000:intron 40.0%
TTGTAATTAGGGAAGGTTGC+TGG - chr4_3:58290930-58290949 None:intergenic 40.0%
GCAAATGCTCCTAGTGATTA+TGG - chr4_3:58291004-58291023 None:intergenic 40.0%
!! TAATCACTAGGAGCATTTGC+TGG + chr4_3:58291004-58291023 Msa0651000:intron 40.0%
!! AATCACTAGGAGCATTTGCT+GGG + chr4_3:58291005-58291024 Msa0651000:intron 40.0%
GAAACATTGCAATGCTTGAG+TGG - chr4_3:58291421-58291440 None:intergenic 40.0%
ATACAGGAATCATCTGCTAC+TGG + chr4_3:58291512-58291531 Msa0651000:intron 40.0%
TATGACAGAAGTCTTTGTCC+AGG + chr4_3:58291619-58291638 Msa0651000:intron 40.0%
!!! GTCCAGGAAAAGTTTTGACT+TGG + chr4_3:58291635-58291654 Msa0651000:intron 40.0%
TCTGCTATATACCAGCTTTG+GGG - chr4_3:58291753-58291772 None:intergenic 40.0%
CAGGTTCACTAGGAAACTAT+TGG + chr4_3:58292010-58292029 Msa0651000:intron 40.0%
! GAAACTATTGGTTGCTGTCA+GGG + chr4_3:58292022-58292041 Msa0651000:CDS 40.0%
ATTTCGTGTACCTGCCAATT+TGG - chr4_3:58292092-58292111 None:intergenic 40.0%
AAATTGGCAGGTACACGAAA+TGG + chr4_3:58292091-58292110 Msa0651000:intron 40.0%
! TTCATTTTGTTCGGAATGCG+GGG - chr4_3:58292144-58292163 None:intergenic 40.0%
! CTTCATTTTGTTCGGAATGC+GGG - chr4_3:58292145-58292164 None:intergenic 40.0%
! GCTTCATTTTGTTCGGAATG+CGG - chr4_3:58292146-58292165 None:intergenic 40.0%
AAATTCTGAGTTAGGTCTGG+AGG + chr4_3:58292223-58292242 Msa0651000:intron 40.0%
CACTGTTCTACGTCAGTAAT+GGG - chr4_3:58292558-58292577 None:intergenic 40.0%
TCACTGTTCTACGTCAGTAA+TGG - chr4_3:58292559-58292578 None:intergenic 40.0%
!! TCAGTTGGTGTTGATCATGT+TGG + chr4_3:58292805-58292824 Msa0651000:intron 40.0%
ATGAAAGTGATCGCAGTCTT+GGG - chr4_3:58293069-58293088 None:intergenic 40.0%
AATGAAAGTGATCGCAGTCT+TGG - chr4_3:58293070-58293089 None:intergenic 40.0%
TAGTACAAGTGCGACTGTAA+AGG - chr4_3:58293133-58293152 None:intergenic 40.0%
CTGTACTATGCAGTATGCAA+GGG - chr4_3:58293175-58293194 None:intergenic 40.0%
ACTGTACTATGCAGTATGCA+AGG - chr4_3:58293176-58293195 None:intergenic 40.0%
AGCCATACTCGAACTTTAGT+TGG - chr4_3:58293361-58293380 None:intergenic 40.0%
!! CGTAAAATTTGGTGTAGCAG+TGG - chr4_3:58293500-58293519 None:intergenic 40.0%
TTATACAAGTGTGAGTGGAG+GGG - chr4_3:58293643-58293662 None:intergenic 40.0%
!! GTTAATGACGATTTGGTGTC+TGG - chr4_3:58293807-58293826 None:intergenic 40.0%
ACACCAAATCGTCATTAACG+AGG + chr4_3:58293808-58293827 Msa0651000:CDS 40.0%
GTACCTCGTTAATGACGATT+TGG - chr4_3:58293814-58293833 None:intergenic 40.0%
!!! TATGTTTGTTTTGAAGGCGG+TGG + chr4_3:58294083-58294102 Msa0651000:intron 40.0%
ACAGCCATTAATGATACGAG+GGG - chr4_3:58294139-58294158 None:intergenic 40.0%
GACAGCCATTAATGATACGA+GGG - chr4_3:58294140-58294159 None:intergenic 40.0%
AGACAGCCATTAATGATACG+AGG - chr4_3:58294141-58294160 None:intergenic 40.0%
! ACGCACATTTTACCGAGATT+TGG + chr4_3:58294161-58294180 Msa0651000:CDS 40.0%
! CACATTTTACCGAGATTTGG+AGG + chr4_3:58294164-58294183 Msa0651000:CDS 40.0%
TTGAGTAATATCCCCTATGC+TGG + chr4_3:58294271-58294290 Msa0651000:three_prime_UTR 40.0%
AACTTATCAGACCAGCATAG+GGG - chr4_3:58294285-58294304 None:intergenic 40.0%
CTAACTTATCAGACCAGCAT+AGG - chr4_3:58294287-58294306 None:intergenic 40.0%
CAACTGGGAAGATCATAAGT+AGG + chr4_3:58294341-58294360 Msa0651000:three_prime_UTR 40.0%
GCATCCCGTAATAAACTTGT+GGG - chr4_3:58294412-58294431 None:intergenic 40.0%
TGCATCCCGTAATAAACTTG+TGG - chr4_3:58294413-58294432 None:intergenic 40.0%
ACTCCACACTTCAACAATGG+AGG + chr4_3:58289346-58289365 Msa0651000:exon 45.0%
CTCCACACTTCAACAATGGA+GGG + chr4_3:58289347-58289366 Msa0651000:exon 45.0%
GAAGTTGAAGGTGAAGAGAG+GGG - chr4_3:58289383-58289402 None:intergenic 45.0%
GGTGGTTTAGTAGTGAAGAG+GGG - chr4_3:58289436-58289455 None:intergenic 45.0%
GTGGTGGTTTAGTAGTGAAG+AGG - chr4_3:58289438-58289457 None:intergenic 45.0%
ATTTGGGGAAGTGAGAGTAG+CGG - chr4_3:58289460-58289479 None:intergenic 45.0%
TGGGTTTGGGAAGGAATTTG+GGG - chr4_3:58289475-58289494 None:intergenic 45.0%
GTCTTTGTCGAGTGCTAAAG+TGG - chr4_3:58289552-58289571 None:intergenic 45.0%
!! CGACCGGTTTTATCGAGTTT+AGG - chr4_3:58289620-58289639 None:intergenic 45.0%
AAACGGATGAATGAGCGTAG+AGG + chr4_3:58289809-58289828 Msa0651000:CDS 45.0%
! GTTTTACTCCAGGCTGCAAT+TGG - chr4_3:58290397-58290416 None:intergenic 45.0%
! CATTTTAAGCTGGTGTGGTG+TGG - chr4_3:58290464-58290483 None:intergenic 45.0%
GTGATTGTGTACAGCAGTGA+GGG - chr4_3:58290626-58290645 None:intergenic 45.0%
TAATATCAGGCTGCCACACA+AGG - chr4_3:58291183-58291202 None:intergenic 45.0%
CGTAGTGCAGCTGTAATATC+AGG - chr4_3:58291196-58291215 None:intergenic 45.0%
ATGTTGTCTCATGGGTACCA+AGG - chr4_3:58291252-58291271 None:intergenic 45.0%
! TAAGGAGGGGTACATCCATA+TGG + chr4_3:58291395-58291414 Msa0651000:intron 45.0%
! CTGCTATATACCAGCTTTGG+GGG - chr4_3:58291752-58291771 None:intergenic 45.0%
CCATTGGAATAAGGAGCTGA+GGG - chr4_3:58291959-58291978 None:intergenic 45.0%
TCCATTGGAATAAGGAGCTG+AGG - chr4_3:58291960-58291979 None:intergenic 45.0%
TAGCACTGTGTCATATCTGC+AGG + chr4_3:58291991-58292010 Msa0651000:intron 45.0%
GTCATATCTGCAGGTTCACT+AGG + chr4_3:58292000-58292019 Msa0651000:intron 45.0%
! GGAAACTATTGGTTGCTGTC+AGG + chr4_3:58292021-58292040 Msa0651000:CDS 45.0%
AGTTATCCCACCAAATTGGC+AGG + chr4_3:58292079-58292098 Msa0651000:CDS 45.0%
! TCATTTTGTTCGGAATGCGG+GGG - chr4_3:58292143-58292162 None:intergenic 45.0%
CTTCCCACTAGGTGACAAAA+AGG + chr4_3:58292525-58292544 Msa0651000:intron 45.0%
TGACGTAGAACAGTGATCCT+AGG + chr4_3:58292563-58292582 Msa0651000:intron 45.0%
GACGTAGAACAGTGATCCTA+GGG + chr4_3:58292564-58292583 Msa0651000:intron 45.0%
!! CAAAGTCAAAGGAGTACCCT+AGG - chr4_3:58292583-58292602 None:intergenic 45.0%
! CTAGGGTACTCCTTTGACTT+TGG + chr4_3:58292581-58292600 Msa0651000:intron 45.0%
! TTTAGTGACTTGCACTCAGC+CGG - chr4_3:58293021-58293040 None:intergenic 45.0%
! TCGAGTATGGCTTGTAACCA+AGG + chr4_3:58293369-58293388 Msa0651000:intron 45.0%
ACAAAAAATTGGGGTGGCCT+TGG - chr4_3:58293389-58293408 None:intergenic 45.0%
CATTTCAGGAAGAACCAGCA+GGG + chr4_3:58293723-58293742 Msa0651000:intron 45.0%
!! AGCTCTAAAATCTTCCCTGC+TGG - chr4_3:58293740-58293759 None:intergenic 45.0%
!! AATAATAAAAACAAAAAATT+GGG - chr4_3:58293399-58293418 None:intergenic 5.0%
CTCCCTCCATTGTTGAAGTG+TGG - chr4_3:58289352-58289371 None:intergenic 50.0%
AGGTGAAGAGAGGGGAAGTA+AGG - chr4_3:58289375-58289394 None:intergenic 50.0%
GCAAAAGCGGTGGTTGAGTT+TGG - chr4_3:58289411-58289430 None:intergenic 50.0%
GTGAAGAGGGGAAGCAAAAG+CGG - chr4_3:58289424-58289443 None:intergenic 50.0%
!! TCTCTGAAATGCTCTCTCCG+TGG + chr4_3:58289524-58289543 Msa0651000:CDS 50.0%
CGAGTGCTAAAGTGGAACCA+CGG - chr4_3:58289544-58289563 None:intergenic 50.0%
TCTCGGACTACAAAACCGAC+CGG - chr4_3:58289636-58289655 None:intergenic 50.0%
TGCTTCGTGTTTGGAGGGAT+TGG + chr4_3:58289766-58289785 Msa0651000:CDS 50.0%
GAAGTATGCCAATTGCAGCC+TGG + chr4_3:58290386-58290405 Msa0651000:intron 50.0%
!!! TGTATTTTTGGCCCTCCCAC+AGG + chr4_3:58290537-58290556 Msa0651000:intron 50.0%
!!! GTATTTTTGGCCCTCCCACA+GGG + chr4_3:58290538-58290557 Msa0651000:intron 50.0%
CAACAAAGCAAAGAGGGAGG+TGG - chr4_3:58290590-58290609 None:intergenic 50.0%
ATTGTGTACAGCAGTGAGGG+AGG - chr4_3:58290623-58290642 None:intergenic 50.0%
GGTGATTGTGTACAGCAGTG+AGG - chr4_3:58290627-58290646 None:intergenic 50.0%
CCAATGGGTAGTCGAGATGA+GGG - chr4_3:58290648-58290667 None:intergenic 50.0%
! GGTTGTGGGTAATGGCCAAT+GGG - chr4_3:58290663-58290682 None:intergenic 50.0%
! TGGTTGTGGGTAATGGCCAA+TGG - chr4_3:58290664-58290683 None:intergenic 50.0%
TTTGCTGGGACGTGAGAACT+AGG + chr4_3:58291019-58291038 Msa0651000:intron 50.0%
GATGACGATGAACTGCGTGA+GGG + chr4_3:58291041-58291060 Msa0651000:intron 50.0%
!! CGTGAGGGATTGGCCAATTA+TGG + chr4_3:58291056-58291075 Msa0651000:intron 50.0%
TACAGCTGCACTACGTGATC+TGG + chr4_3:58291201-58291220 Msa0651000:intron 50.0%
TGGTTCTCACTGCAGCAGTT+TGG + chr4_3:58291326-58291345 Msa0651000:intron 50.0%
GCAATGCTTGAGTGGCCATA+TGG - chr4_3:58291413-58291432 None:intergenic 50.0%
GCTGCAAGGACTTCTTCTTC+TGG - chr4_3:58291728-58291747 None:intergenic 50.0%
CCCTCAGCTCCTTATTCCAA+TGG + chr4_3:58291956-58291975 Msa0651000:intron 50.0%
TGGTTGCTGTCAGGGATAGA+TGG + chr4_3:58292030-58292049 Msa0651000:CDS 50.0%
GGTTGCTGTCAGGGATAGAT+GGG + chr4_3:58292031-58292050 Msa0651000:CDS 50.0%
CGTGTACCTGCCAATTTGGT+GGG - chr4_3:58292088-58292107 None:intergenic 50.0%
TCGTGTACCTGCCAATTTGG+TGG - chr4_3:58292089-58292108 None:intergenic 50.0%
! CATTTTGTTCGGAATGCGGG+GGG - chr4_3:58292142-58292161 None:intergenic 50.0%
TTACAAGCAGTGAGGGAGCT+TGG - chr4_3:58293583-58293602 None:intergenic 50.0%
! AGGGGTGTGTGTGTATGCTA+GGG - chr4_3:58293625-58293644 None:intergenic 50.0%
GCATTTCAGGAAGAACCAGC+AGG + chr4_3:58293722-58293741 Msa0651000:intron 50.0%
!!! TGTTTTGAAGGCGGTGGATC+TGG + chr4_3:58294089-58294108 Msa0651000:intron 50.0%
CTGGCTAAACGGTTCTGTGA+TGG + chr4_3:58294108-58294127 Msa0651000:CDS 50.0%
GCAGCCCCTCGTATCATTAA+TGG + chr4_3:58294132-58294151 Msa0651000:CDS 50.0%
AAGAGGGGAAGCAAAAGCGG+TGG - chr4_3:58289421-58289440 None:intergenic 55.0%
GCAAGTTCTCTAGCGGCTCT+CGG - chr4_3:58289653-58289672 None:intergenic 55.0%
GTGTTTGGAGGGATTGGACC+CGG + chr4_3:58289772-58289791 Msa0651000:CDS 55.0%
AAGACTTGGGACTAGGGGTG+TGG + chr4_3:58290327-58290346 Msa0651000:intron 55.0%
!! AGCAAATAGGGGTGCCCTGT+GGG - chr4_3:58290555-58290574 None:intergenic 55.0%
CCCTCATCTCGACTACCCAT+TGG + chr4_3:58290645-58290664 Msa0651000:intron 55.0%
GCCAATGGGTAGTCGAGATG+AGG - chr4_3:58290649-58290668 None:intergenic 55.0%
GGATGACGATGAACTGCGTG+AGG + chr4_3:58291040-58291059 Msa0651000:intron 55.0%
CGATGAACTGCGTGAGGGAT+TGG + chr4_3:58291046-58291065 Msa0651000:intron 55.0%
AAGCAGTGAGGGAGCTTGGT+TGG - chr4_3:58293579-58293598 None:intergenic 55.0%
! GAGGGGTGTGTGTGTATGCT+AGG - chr4_3:58293626-58293645 None:intergenic 55.0%
AGGCGGTGGATCTGGCTAAA+CGG + chr4_3:58294097-58294116 Msa0651000:intron 55.0%
GGAAGTGAGAGTAGCGGTGG+TGG - chr4_3:58289454-58289473 None:intergenic 60.0%
TGGGGAAGTGAGAGTAGCGG+TGG - chr4_3:58289457-58289476 None:intergenic 60.0%
TGGAGGGATTGGACCCGGTT+CGG + chr4_3:58289777-58289796 Msa0651000:CDS 60.0%
!! AATAGGGGTGCCCTGTGGGA+GGG - chr4_3:58290551-58290570 None:intergenic 60.0%
!! AAATAGGGGTGCCCTGTGGG+AGG - chr4_3:58290552-58290571 None:intergenic 60.0%
!! CAGCAAATAGGGGTGCCCTG+TGG - chr4_3:58290556-58290575 None:intergenic 60.0%
!! CCAGCTTTGGGGGAGCTGCA+AGG - chr4_3:58291742-58291761 None:intergenic 65.0%
CCTTGCAGCTCCCCCAAAGC+TGG + chr4_3:58291739-58291758 Msa0651000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58289326 58294518 58289326 ID=Msa0651000;Name=Msa0651000
chr4_3 mRNA 58289326 58294518 58289326 ID=Msa0651000-mRNA-1;Parent=Msa0651000;Name=Msa0651000-mRNA-1;_AED=0.07;_eAED=0.07;_QI=36|1|1|1|1|1|7|312|291
chr4_3 exon 58289326 58289675 58289326 ID=Msa0651000-mRNA-1:exon:15412;Parent=Msa0651000-mRNA-1
chr4_3 exon 58289754 58289830 58289754 ID=Msa0651000-mRNA-1:exon:15413;Parent=Msa0651000-mRNA-1
chr4_3 exon 58289909 58290043 58289909 ID=Msa0651000-mRNA-1:exon:15414;Parent=Msa0651000-mRNA-1
chr4_3 exon 58291729 58291783 58291729 ID=Msa0651000-mRNA-1:exon:15415;Parent=Msa0651000-mRNA-1
chr4_3 exon 58292013 58292100 58292013 ID=Msa0651000-mRNA-1:exon:15416;Parent=Msa0651000-mRNA-1
chr4_3 exon 58293731 58293829 58293731 ID=Msa0651000-mRNA-1:exon:15417;Parent=Msa0651000-mRNA-1
chr4_3 exon 58294099 58294518 58294099 ID=Msa0651000-mRNA-1:exon:15418;Parent=Msa0651000-mRNA-1
chr4_3 five_prime_UTR 58289326 58289361 58289326 ID=Msa0651000-mRNA-1:five_prime_utr;Parent=Msa0651000-mRNA-1
chr4_3 CDS 58289362 58289675 58289362 ID=Msa0651000-mRNA-1:cds;Parent=Msa0651000-mRNA-1
chr4_3 CDS 58289754 58289830 58289754 ID=Msa0651000-mRNA-1:cds;Parent=Msa0651000-mRNA-1
chr4_3 CDS 58289909 58290043 58289909 ID=Msa0651000-mRNA-1:cds;Parent=Msa0651000-mRNA-1
chr4_3 CDS 58291729 58291783 58291729 ID=Msa0651000-mRNA-1:cds;Parent=Msa0651000-mRNA-1
chr4_3 CDS 58292013 58292100 58292013 ID=Msa0651000-mRNA-1:cds;Parent=Msa0651000-mRNA-1
chr4_3 CDS 58293731 58293829 58293731 ID=Msa0651000-mRNA-1:cds;Parent=Msa0651000-mRNA-1
chr4_3 CDS 58294099 58294206 58294099 ID=Msa0651000-mRNA-1:cds;Parent=Msa0651000-mRNA-1
chr4_3 three_prime_UTR 58294207 58294518 58294207 ID=Msa0651000-mRNA-1:three_prime_utr;Parent=Msa0651000-mRNA-1
Gene Sequence

>Msa0651000

ATGGAGGGAGCCTTACTTCCCCTCTCTTCACCTTCAACTTCTTCTTCCAAACTCAACCACCGCTTTTGCTTCCCCTCTTCACTACTAAACCACCACCGCTACTCTCACTTCCCCAAATTCCTTCCCAAACCCAAAATTAACACCGCTACTTCATCACCTTTATCTCTGAAATGCTCTCTCCGTGGTTCCACTTTAGCACTCGACAAAGACGAAACTTCTGTCTCAGAAATAGCTGATAACTCTTCAATTTCTTTGCCTAAACTCGATAAAACCGGTCGGTTTTGTAGTCCGAGAGCCGCTAGAGAACTTGCTCTGTCTATAATTTATGCTTCGTGTTTGGAGGGATTGGACCCGGTTCGGTTATTTGAGAAACGGATGAATGAGCGTAGAGAGGTTGGTTATGAATTTAACAAGGACAAATTGTTGGAGTATAATCACATGAGTTTCGGAGGGCCACCTGTTATCGTTGAAACAGATGAAGAAGCTAATGAACTTCTAAGGAACATTCAACTCGAGTCTGCAATTGAAGAAGAAGTCCTTGCAGCTCCCCCAAAGCTGGTATATAGCAGATTGATTTTGAGGTTCACTAGGAAACTATTGGTTGCTGTCAGGGATAGATGGGACAGTCACGTCCCTGTCATTAACAAAGTTATCCCACCAAATTGGCAGGAAGAACCAGCAGGGAAGATTTTAGAGCTTTCTATTCTTCACTTGGCAATGTCTGAAATAGCTATGCTAGACACCAGACACCAAATCGTCATTAACGAGGCGGTGGATCTGGCTAAACGGTTCTGTGATGGAGCAGCCCCTCGTATCATTAATGGCTGTCTACGCACATTTTACCGAGATTTGGAGGCATCAAATAATAGGGTTTAG

Protein sequence

>Msa0651000

MEGALLPLSSPSTSSSKLNHRFCFPSSLLNHHRYSHFPKFLPKPKINTATSSPLSLKCSLRGSTLALDKDETSVSEIADNSSISLPKLDKTGRFCSPRAARELALSIIYASCLEGLDPVRLFEKRMNERREVGYEFNKDKLLEYNHMSFGGPPVIVETDEEANELLRNIQLESAIEEEVLAAPPKLVYSRLILRFTRKLLVAVRDRWDSHVPVINKVIPPNWQEEPAGKILELSILHLAMSEIAMLDTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFYRDLEASNNRV*