AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027020 MtrunA17_Chr1g0182931 95.270 148 4 1 1 145 1 148 4.40e-97 276
Msa0027020 MtrunA17_Chr7g0262621 66.216 148 35 5 1 144 1 137 1.03e-58 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027020 AT2G20260.1 63.014 146 45 3 5 144 2 144 6.09e-45 144
Msa0027020 AT4G28750.1 57.931 145 51 3 5 144 2 141 9.15e-35 118

Find 87 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGTAAACTTTAAGATTA+TGG 0.127183 1_1:-51225227 None:intergenic
CATTGGCGTAGTTCACTTTC+TGG 0.135317 1_1:-51225011 None:intergenic
GTTAGTTTGGTTGTTTATTT+TGG 0.151055 1_1:-51223881 None:intergenic
CCAATATTGTTGGACTTTAA+AGG 0.153877 1_1:-51224107 None:intergenic
ACATGCCTAATTAGGCATTT+AGG 0.249206 1_1:-51225289 None:intergenic
ATTGGTGGTGGCTTGGGTTT+AGG 0.254441 1_1:-51224227 None:intergenic
GGGGCCAATTGGTGGTGGCT+TGG 0.265521 1_1:-51224234 None:intergenic
ATGTAAGTGCCGTACATTTA+AGG 0.267466 1_1:+51225308 Msa0027020:three_prime_UTR
ATACTCCTAAATGCCTAATT+AGG 0.269615 1_1:+51225284 Msa0027020:three_prime_UTR
GGGCCAATTGGTGGTGGCTT+GGG 0.275299 1_1:-51224233 None:intergenic
CAAGTAAACTTTAAGATTAT+GGG 0.291812 1_1:-51225226 None:intergenic
CGGCACTTACATGCCTAATT+AGG 0.305440 1_1:-51225297 None:intergenic
CAATATTGTTGGACTTTAAA+GGG 0.305571 1_1:-51224106 None:intergenic
GTGGAGGCAGCAGGTGCAGC+CGG 0.318522 1_1:-51224176 None:intergenic
CCTTTAAAGTCCAACAATAT+TGG 0.324065 1_1:+51224107 Msa0027020:CDS
GTGAGTGAAGTGTGTTAGTT+TGG 0.328090 1_1:-51223894 None:intergenic
CTTCTTCTAGACTTGTTGTC+AGG 0.342347 1_1:+51224135 Msa0027020:CDS
CTTACTATCATAAGGATACT+TGG 0.368802 1_1:-51225379 None:intergenic
GTCAATTTCAGTTGGTGCAT+TGG 0.372321 1_1:-51225331 None:intergenic
TTATCCAATGGATTGGGATA+TGG 0.380731 1_1:+51223787 Msa0027020:five_prime_UTR
CTCAACAGGTGAAGATTCTT+AGG 0.381804 1_1:+51224799 Msa0027020:intron
TGTCAATCGTTTCCTCCACT+TGG 0.388848 1_1:-51223827 None:intergenic
GAACCTCTCTTGGGGCCAAT+TGG 0.393160 1_1:-51224245 None:intergenic
CTCTTGGGGCCAATTGGTGG+TGG 0.405813 1_1:-51224239 None:intergenic
CCTTGATGAAGTTGTGTTGT+TGG 0.411874 1_1:-51224066 None:intergenic
TGGCCCCAAGAGAGGTTCTA+AGG 0.412793 1_1:+51224250 Msa0027020:CDS
ACGACAGGGTAGCGAGTCTT+GGG 0.413817 1_1:-51224979 None:intergenic
GATAATCTTAATGTGGCAAA+AGG 0.414539 1_1:-51223949 None:intergenic
AATTACCTTAGAACCTCTCT+TGG 0.417720 1_1:-51224255 None:intergenic
CATTTGAACTTACTATCATA+AGG 0.420678 1_1:-51225387 None:intergenic
AGAAGAAGAACCAATATTGT+TGG 0.421736 1_1:-51224117 None:intergenic
TGCAGCCGGGGCAGCCTCAT+CGG 0.425226 1_1:-51224162 None:intergenic
ATCGACAAATAACTATGCTT+TGG 0.426234 1_1:+51225035 Msa0027020:CDS
GGTGGCTTGGGTTTAGGAGT+AGG 0.430314 1_1:-51224221 None:intergenic
CTTCTTATTGTAATCAAATG+AGG 0.430615 1_1:+51225249 Msa0027020:three_prime_UTR
CCTCTCTTGGGGCCAATTGG+TGG 0.430678 1_1:-51224242 None:intergenic
CATCTCATCCTCAGAAACTT+TGG 0.431422 1_1:-51223850 None:intergenic
GACAACATTATCCAATGGAT+TGG 0.436488 1_1:+51223780 Msa0027020:five_prime_UTR
GCTGGAGCAGTGGAGGCAGC+AGG 0.442829 1_1:-51224185 None:intergenic
TTCTGGAATCGAACCACGAC+AGG 0.446735 1_1:-51224994 None:intergenic
ATTACCTTAGAACCTCTCTT+GGG 0.450802 1_1:-51224254 None:intergenic
CACGACAGGGTAGCGAGTCT+TGG 0.452960 1_1:-51224980 None:intergenic
GGCAACCGATGAGGCTGCCC+CGG 0.460044 1_1:+51224157 Msa0027020:CDS
GCTGCCTCCACTGCTCCAGC+TGG 0.461366 1_1:+51224188 Msa0027020:CDS
AAACCCAAGCCACCACCAAT+TGG 0.463084 1_1:+51224230 Msa0027020:CDS
AAAACGAATGAGTTGTAAGT+AGG 0.468117 1_1:+51223757 Msa0027020:five_prime_UTR
GGAGGCAGCAGGTGCAGCCG+GGG 0.477518 1_1:-51224174 None:intergenic
TTCTTCTAGACTTGTTGTCA+GGG 0.490708 1_1:+51224136 Msa0027020:CDS
ATGGGCAACTGCACAATGAA+TGG 0.491942 1_1:-51225208 None:intergenic
GTAGGAGCAGCATCACCAGC+TGG 0.494338 1_1:-51224203 None:intergenic
TGGAGGCAGCAGGTGCAGCC+GGG 0.495138 1_1:-51224175 None:intergenic
GATTAGATTGAGGTATGAGA+GGG 0.497810 1_1:-51223922 None:intergenic
AGCATGGCATCAGCAGCTAC+TGG 0.498675 1_1:+51224017 Msa0027020:CDS
ACAACATTATCCAATGGATT+GGG 0.499377 1_1:+51223781 Msa0027020:five_prime_UTR
ATTCTTAGTTAGAGTTCGAT+AGG 0.501063 1_1:+51225485 Msa0027020:three_prime_UTR
ATCACCAGCTGGAGCAGTGG+AGG 0.508802 1_1:-51224192 None:intergenic
ATATTGAAGTTACTAGCCTA+AGG 0.519270 1_1:+51225118 Msa0027020:three_prime_UTR
AGCATCACCAGCTGGAGCAG+TGG 0.519718 1_1:-51224195 None:intergenic
TCCTACTGGTACAAAGGCAC+TGG 0.520039 1_1:+51224828 Msa0027020:CDS
GTGCATTGGCCTTAAATGTA+CGG 0.523721 1_1:-51225317 None:intergenic
ATAGTTATTTGTCGATACAT+TGG 0.524557 1_1:-51225028 None:intergenic
TTACTATCATAAGGATACTT+GGG 0.529141 1_1:-51225378 None:intergenic
AGATTAGATTGAGGTATGAG+AGG 0.540515 1_1:-51223923 None:intergenic
TGCACCATATCCCAATCCAT+TGG 0.540763 1_1:-51223791 None:intergenic
TTCTTAGGAAGGAATCCTAC+TGG 0.542855 1_1:+51224814 Msa0027020:CDS
GTCAATCGTTTCCTCCACTT+GGG 0.546716 1_1:-51223826 None:intergenic
TAAGTTCAAATGAGTGACAT+TGG 0.562913 1_1:+51225398 Msa0027020:three_prime_UTR
AAACGAATGAGTTGTAAGTA+GGG 0.570125 1_1:+51223758 Msa0027020:five_prime_UTR
ACAGGTGAAGATTCTTAGGA+AGG 0.576965 1_1:+51224803 Msa0027020:intron
AAGGAATCCTACTGGTACAA+AGG 0.577304 1_1:+51224822 Msa0027020:CDS
CCACCAATTGGCCCCAAGAG+AGG 0.582857 1_1:+51224242 Msa0027020:CDS
GATTGACACCAAAGTTTCTG+AGG 0.592055 1_1:+51223842 Msa0027020:five_prime_UTR
CTTAGTTAGAGTTCGATAGG+AGG 0.592178 1_1:+51225488 Msa0027020:three_prime_UTR
CAAGACTCGCTACCCTGTCG+TGG 0.613483 1_1:+51224981 Msa0027020:CDS
CCAACAACACAACTTCATCA+AGG 0.613961 1_1:+51224066 Msa0027020:CDS
AAAAGGACAAGATTAGATTG+AGG 0.617552 1_1:-51223932 None:intergenic
AGTCATGGCTAGCAGCAGCA+TGG 0.629935 1_1:+51224001 Msa0027020:exon
GTAGGGACAACATTATCCAA+TGG 0.634241 1_1:+51223775 Msa0027020:five_prime_UTR
TGTTGTCAGGGCAACCGATG+AGG 0.640147 1_1:+51224148 Msa0027020:CDS
CTTTAAAGGGAACATCAACA+TGG 0.644075 1_1:-51224093 None:intergenic
TTACCTTAGAACCTCTCTTG+GGG 0.647944 1_1:-51224253 None:intergenic
CACAAGTGTCATCACCCAAG+TGG 0.648059 1_1:+51223812 Msa0027020:five_prime_UTR
CACAGAAAGAAAGATAGTCA+TGG 0.651778 1_1:+51223986 Msa0027020:exon
AAGTGTCATCACCCAAGTGG+AGG 0.652030 1_1:+51223815 Msa0027020:five_prime_UTR
TCCAGTGCCTTTGTACCAGT+AGG 0.656987 1_1:-51224829 None:intergenic
CGACAGGGTAGCGAGTCTTG+GGG 0.696532 1_1:-51224978 None:intergenic
TCTGGAATCGAACCACGACA+GGG 0.707301 1_1:-51224993 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTAGTTTGAATTTACTTA+TGG + chr1_1:51224366-51224385 Msa0027020:intron 20.0%
!!! AAGATATATTAGAGTGTTTT+TGG + chr1_1:51224482-51224501 Msa0027020:intron 20.0%
!! ATTATGAGGAAAAAACTTAA+AGG - chr1_1:51224908-51224927 None:intergenic 20.0%
!!! CAAGTAAACTTTAAGATTAT+GGG - chr1_1:51225229-51225248 None:intergenic 20.0%
!!! AAGTTTTCAGTTTCATTTTT+AGG - chr1_1:51225356-51225375 None:intergenic 20.0%
!!! GTTTAGTTTGAATTTACTTA+TGG + chr1_1:51224366-51224385 Msa0027020:intron 20.0%
!!! AAGATATATTAGAGTGTTTT+TGG + chr1_1:51224482-51224501 Msa0027020:intron 20.0%
!! ATTATGAGGAAAAAACTTAA+AGG - chr1_1:51224908-51224927 None:intergenic 20.0%
!!! CAAGTAAACTTTAAGATTAT+GGG - chr1_1:51225229-51225248 None:intergenic 20.0%
!!! AAGTTTTCAGTTTCATTTTT+AGG - chr1_1:51225356-51225375 None:intergenic 20.0%
!!! GTTAGTTTGGTTGTTTATTT+TGG - chr1_1:51223884-51223903 None:intergenic 25.0%
!!! CTCTTTTGATAATCTTAATG+TGG - chr1_1:51223959-51223978 None:intergenic 25.0%
! CAATATTGTTGGACTTTAAA+GGG - chr1_1:51224109-51224128 None:intergenic 25.0%
! TTCTTGTTGCAATTATACAT+TGG + chr1_1:51224344-51224363 Msa0027020:intron 25.0%
!!! AAGTGAGTTTTAGTTGAAAT+AGG - chr1_1:51224526-51224545 None:intergenic 25.0%
! TATTTCAACTAAAACTCACT+TGG + chr1_1:51224525-51224544 Msa0027020:intron 25.0%
! ATTTCAACTAAAACTCACTT+GGG + chr1_1:51224526-51224545 Msa0027020:intron 25.0%
! TAGCTAAAGATAGTTGAAAT+AGG - chr1_1:51224666-51224685 None:intergenic 25.0%
! ATAGTTATTTGTCGATACAT+TGG - chr1_1:51225031-51225050 None:intergenic 25.0%
!! TTTTGACATGAAAAAACCTT+AGG - chr1_1:51225137-51225156 None:intergenic 25.0%
!!! GCAAGTAAACTTTAAGATTA+TGG - chr1_1:51225230-51225249 None:intergenic 25.0%
! CTTCTTATTGTAATCAAATG+AGG + chr1_1:51225249-51225268 Msa0027020:three_prime_UTR 25.0%
!!! ATTTTTAGGTCAATTTCAGT+TGG - chr1_1:51225342-51225361 None:intergenic 25.0%
! TTACTATCATAAGGATACTT+GGG - chr1_1:51225381-51225400 None:intergenic 25.0%
! CATTTGAACTTACTATCATA+AGG - chr1_1:51225390-51225409 None:intergenic 25.0%
!!! GTTAGTTTGGTTGTTTATTT+TGG - chr1_1:51223884-51223903 None:intergenic 25.0%
!!! CTCTTTTGATAATCTTAATG+TGG - chr1_1:51223959-51223978 None:intergenic 25.0%
! CAATATTGTTGGACTTTAAA+GGG - chr1_1:51224109-51224128 None:intergenic 25.0%
! TTCTTGTTGCAATTATACAT+TGG + chr1_1:51224344-51224363 Msa0027020:intron 25.0%
!!! AAGTGAGTTTTAGTTGAAAT+AGG - chr1_1:51224526-51224545 None:intergenic 25.0%
! TATTTCAACTAAAACTCACT+TGG + chr1_1:51224525-51224544 Msa0027020:intron 25.0%
! ATTTCAACTAAAACTCACTT+GGG + chr1_1:51224526-51224545 Msa0027020:intron 25.0%
! TAGCTAAAGATAGTTGAAAT+AGG - chr1_1:51224666-51224685 None:intergenic 25.0%
! ATAGTTATTTGTCGATACAT+TGG - chr1_1:51225031-51225050 None:intergenic 25.0%
!! TTTTGACATGAAAAAACCTT+AGG - chr1_1:51225137-51225156 None:intergenic 25.0%
!!! GCAAGTAAACTTTAAGATTA+TGG - chr1_1:51225230-51225249 None:intergenic 25.0%
! CTTCTTATTGTAATCAAATG+AGG + chr1_1:51225249-51225268 Msa0027020:three_prime_UTR 25.0%
!!! ATTTTTAGGTCAATTTCAGT+TGG - chr1_1:51225342-51225361 None:intergenic 25.0%
! TTACTATCATAAGGATACTT+GGG - chr1_1:51225381-51225400 None:intergenic 25.0%
! CATTTGAACTTACTATCATA+AGG - chr1_1:51225390-51225409 None:intergenic 25.0%
AAAACGAATGAGTTGTAAGT+AGG + chr1_1:51223757-51223776 Msa0027020:five_prime_UTR 30.0%
AAACGAATGAGTTGTAAGTA+GGG + chr1_1:51223758-51223777 Msa0027020:five_prime_UTR 30.0%
! ACAACATTATCCAATGGATT+GGG + chr1_1:51223781-51223800 Msa0027020:five_prime_UTR 30.0%
!!! AGTTTGGTTGTTTATTTTGG+AGG - chr1_1:51223881-51223900 None:intergenic 30.0%
AAAAGGACAAGATTAGATTG+AGG - chr1_1:51223935-51223954 None:intergenic 30.0%
GATAATCTTAATGTGGCAAA+AGG - chr1_1:51223952-51223971 None:intergenic 30.0%
CCAATATTGTTGGACTTTAA+AGG - chr1_1:51224110-51224129 None:intergenic 30.0%
!! CCTTTAAAGTCCAACAATAT+TGG + chr1_1:51224107-51224126 Msa0027020:CDS 30.0%
AGAAGAAGAACCAATATTGT+TGG - chr1_1:51224120-51224139 None:intergenic 30.0%
TGATACTACTTATGACTTTG+TGG + chr1_1:51224440-51224459 Msa0027020:intron 30.0%
! TTGGTTGAAATTTGAGTTTG+AGG - chr1_1:51224884-51224903 None:intergenic 30.0%
GAGGAAAAAACTTAAAGGTT+TGG - chr1_1:51224903-51224922 None:intergenic 30.0%
!!! GTTTTTTCCTCATAATCCAT+TGG + chr1_1:51224912-51224931 Msa0027020:intron 30.0%
ATCGACAAATAACTATGCTT+TGG + chr1_1:51225035-51225054 Msa0027020:CDS 30.0%
! ATATTGAAGTTACTAGCCTA+AGG + chr1_1:51225118-51225137 Msa0027020:three_prime_UTR 30.0%
ATACTCCTAAATGCCTAATT+AGG + chr1_1:51225284-51225303 Msa0027020:three_prime_UTR 30.0%
CTTACTATCATAAGGATACT+TGG - chr1_1:51225382-51225401 None:intergenic 30.0%
TAAGTTCAAATGAGTGACAT+TGG + chr1_1:51225398-51225417 Msa0027020:three_prime_UTR 30.0%
!!! ACTACCTTGCAATTTTTTTG+TGG + chr1_1:51225455-51225474 Msa0027020:three_prime_UTR 30.0%
!!! CTACCTTGCAATTTTTTTGT+GGG + chr1_1:51225456-51225475 Msa0027020:three_prime_UTR 30.0%
ATTCTTAGTTAGAGTTCGAT+AGG + chr1_1:51225485-51225504 Msa0027020:three_prime_UTR 30.0%
AAAACGAATGAGTTGTAAGT+AGG + chr1_1:51223757-51223776 Msa0027020:five_prime_UTR 30.0%
AAACGAATGAGTTGTAAGTA+GGG + chr1_1:51223758-51223777 Msa0027020:five_prime_UTR 30.0%
! ACAACATTATCCAATGGATT+GGG + chr1_1:51223781-51223800 Msa0027020:five_prime_UTR 30.0%
!!! AGTTTGGTTGTTTATTTTGG+AGG - chr1_1:51223881-51223900 None:intergenic 30.0%
AAAAGGACAAGATTAGATTG+AGG - chr1_1:51223935-51223954 None:intergenic 30.0%
GATAATCTTAATGTGGCAAA+AGG - chr1_1:51223952-51223971 None:intergenic 30.0%
CCAATATTGTTGGACTTTAA+AGG - chr1_1:51224110-51224129 None:intergenic 30.0%
!! CCTTTAAAGTCCAACAATAT+TGG + chr1_1:51224107-51224126 Msa0027020:CDS 30.0%
AGAAGAAGAACCAATATTGT+TGG - chr1_1:51224120-51224139 None:intergenic 30.0%
TGATACTACTTATGACTTTG+TGG + chr1_1:51224440-51224459 Msa0027020:intron 30.0%
! TTGGTTGAAATTTGAGTTTG+AGG - chr1_1:51224884-51224903 None:intergenic 30.0%
GAGGAAAAAACTTAAAGGTT+TGG - chr1_1:51224903-51224922 None:intergenic 30.0%
!!! GTTTTTTCCTCATAATCCAT+TGG + chr1_1:51224912-51224931 Msa0027020:intron 30.0%
ATCGACAAATAACTATGCTT+TGG + chr1_1:51225035-51225054 Msa0027020:CDS 30.0%
! ATATTGAAGTTACTAGCCTA+AGG + chr1_1:51225118-51225137 Msa0027020:three_prime_UTR 30.0%
ATACTCCTAAATGCCTAATT+AGG + chr1_1:51225284-51225303 Msa0027020:three_prime_UTR 30.0%
CTTACTATCATAAGGATACT+TGG - chr1_1:51225382-51225401 None:intergenic 30.0%
TAAGTTCAAATGAGTGACAT+TGG + chr1_1:51225398-51225417 Msa0027020:three_prime_UTR 30.0%
!!! ACTACCTTGCAATTTTTTTG+TGG + chr1_1:51225455-51225474 Msa0027020:three_prime_UTR 30.0%
!!! CTACCTTGCAATTTTTTTGT+GGG + chr1_1:51225456-51225475 Msa0027020:three_prime_UTR 30.0%
ATTCTTAGTTAGAGTTCGAT+AGG + chr1_1:51225485-51225504 Msa0027020:three_prime_UTR 30.0%
GACAACATTATCCAATGGAT+TGG + chr1_1:51223780-51223799 Msa0027020:five_prime_UTR 35.0%
!! TTATCCAATGGATTGGGATA+TGG + chr1_1:51223787-51223806 Msa0027020:five_prime_UTR 35.0%
GATTAGATTGAGGTATGAGA+GGG - chr1_1:51223925-51223944 None:intergenic 35.0%
AGATTAGATTGAGGTATGAG+AGG - chr1_1:51223926-51223945 None:intergenic 35.0%
CACAGAAAGAAAGATAGTCA+TGG + chr1_1:51223986-51224005 Msa0027020:exon 35.0%
! CTTTAAAGGGAACATCAACA+TGG - chr1_1:51224096-51224115 None:intergenic 35.0%
!! TTCTTCTAGACTTGTTGTCA+GGG + chr1_1:51224136-51224155 Msa0027020:CDS 35.0%
ATTACCTTAGAACCTCTCTT+GGG - chr1_1:51224257-51224276 None:intergenic 35.0%
AATTACCTTAGAACCTCTCT+TGG - chr1_1:51224258-51224277 None:intergenic 35.0%
AATCTCCGTAGTGTCAATTT+AGG + chr1_1:51224610-51224629 Msa0027020:intron 35.0%
! CTATCTTTAGCTAGTCTACA+CGG + chr1_1:51224673-51224692 Msa0027020:intron 35.0%
GATATTTCTTTGCACTCAAC+AGG + chr1_1:51224785-51224804 Msa0027020:intron 35.0%
!! TGAGTTACCAATGGATTATG+AGG - chr1_1:51224922-51224941 None:intergenic 35.0%
! GTAACTCAGCTCTTGTTTAA+CGG + chr1_1:51224934-51224953 Msa0027020:intron 35.0%
ACATGCCTAATTAGGCATTT+AGG - chr1_1:51225292-51225311 None:intergenic 35.0%
! ATGTAAGTGCCGTACATTTA+AGG + chr1_1:51225308-51225327 Msa0027020:three_prime_UTR 35.0%
TCACCCACAAAAAAATTGCA+AGG - chr1_1:51225462-51225481 None:intergenic 35.0%
GACAACATTATCCAATGGAT+TGG + chr1_1:51223780-51223799 Msa0027020:five_prime_UTR 35.0%
!! TTATCCAATGGATTGGGATA+TGG + chr1_1:51223787-51223806 Msa0027020:five_prime_UTR 35.0%
GATTAGATTGAGGTATGAGA+GGG - chr1_1:51223925-51223944 None:intergenic 35.0%
AGATTAGATTGAGGTATGAG+AGG - chr1_1:51223926-51223945 None:intergenic 35.0%
CACAGAAAGAAAGATAGTCA+TGG + chr1_1:51223986-51224005 Msa0027020:exon 35.0%
! CTTTAAAGGGAACATCAACA+TGG - chr1_1:51224096-51224115 None:intergenic 35.0%
!! TTCTTCTAGACTTGTTGTCA+GGG + chr1_1:51224136-51224155 Msa0027020:CDS 35.0%
ATTACCTTAGAACCTCTCTT+GGG - chr1_1:51224257-51224276 None:intergenic 35.0%
AATTACCTTAGAACCTCTCT+TGG - chr1_1:51224258-51224277 None:intergenic 35.0%
AATCTCCGTAGTGTCAATTT+AGG + chr1_1:51224610-51224629 Msa0027020:intron 35.0%
! CTATCTTTAGCTAGTCTACA+CGG + chr1_1:51224673-51224692 Msa0027020:intron 35.0%
GATATTTCTTTGCACTCAAC+AGG + chr1_1:51224785-51224804 Msa0027020:intron 35.0%
!! TGAGTTACCAATGGATTATG+AGG - chr1_1:51224922-51224941 None:intergenic 35.0%
! GTAACTCAGCTCTTGTTTAA+CGG + chr1_1:51224934-51224953 Msa0027020:intron 35.0%
ACATGCCTAATTAGGCATTT+AGG - chr1_1:51225292-51225311 None:intergenic 35.0%
! ATGTAAGTGCCGTACATTTA+AGG + chr1_1:51225308-51225327 Msa0027020:three_prime_UTR 35.0%
TCACCCACAAAAAAATTGCA+AGG - chr1_1:51225462-51225481 None:intergenic 35.0%
GTAGGGACAACATTATCCAA+TGG + chr1_1:51223775-51223794 Msa0027020:five_prime_UTR 40.0%
GATTGACACCAAAGTTTCTG+AGG + chr1_1:51223842-51223861 Msa0027020:five_prime_UTR 40.0%
CATCTCATCCTCAGAAACTT+TGG - chr1_1:51223853-51223872 None:intergenic 40.0%
GTGAGTGAAGTGTGTTAGTT+TGG - chr1_1:51223897-51223916 None:intergenic 40.0%
CCTTGATGAAGTTGTGTTGT+TGG - chr1_1:51224069-51224088 None:intergenic 40.0%
CCAACAACACAACTTCATCA+AGG + chr1_1:51224066-51224085 Msa0027020:CDS 40.0%
!! CTTCTTCTAGACTTGTTGTC+AGG + chr1_1:51224135-51224154 Msa0027020:CDS 40.0%
TTACCTTAGAACCTCTCTTG+GGG - chr1_1:51224256-51224275 None:intergenic 40.0%
CAACTAAAACTCACTTGGGT+TGG + chr1_1:51224530-51224549 Msa0027020:intron 40.0%
AGGTCTCAAGTCAATATCAC+CGG - chr1_1:51224557-51224576 None:intergenic 40.0%
GTCCACCTAAATTGACACTA+CGG - chr1_1:51224618-51224637 None:intergenic 40.0%
!! TCGGTGATTAGTCTCATAAC+CGG + chr1_1:51224701-51224720 Msa0027020:intron 40.0%
ATAACCGGTCTAAATTGACG+AGG + chr1_1:51224716-51224735 Msa0027020:intron 40.0%
TAACCGGTCTAAATTGACGA+GGG + chr1_1:51224717-51224736 Msa0027020:intron 40.0%
CTCAACAGGTGAAGATTCTT+AGG + chr1_1:51224799-51224818 Msa0027020:intron 40.0%
ACAGGTGAAGATTCTTAGGA+AGG + chr1_1:51224803-51224822 Msa0027020:intron 40.0%
TTCTTAGGAAGGAATCCTAC+TGG + chr1_1:51224814-51224833 Msa0027020:CDS 40.0%
AAGGAATCCTACTGGTACAA+AGG + chr1_1:51224822-51224841 Msa0027020:CDS 40.0%
AACAAGAGCTGAGTTACCAA+TGG - chr1_1:51224931-51224950 None:intergenic 40.0%
!! CGGATTTTTCTTTGTTGTGC+AGG + chr1_1:51224954-51224973 Msa0027020:intron 40.0%
!! GTGCATTGGCCTTAAATGTA+CGG - chr1_1:51225320-51225339 None:intergenic 40.0%
! GTCAATTTCAGTTGGTGCAT+TGG - chr1_1:51225334-51225353 None:intergenic 40.0%
CTTAGTTAGAGTTCGATAGG+AGG + chr1_1:51225488-51225507 Msa0027020:three_prime_UTR 40.0%
GTAGGGACAACATTATCCAA+TGG + chr1_1:51223775-51223794 Msa0027020:five_prime_UTR 40.0%
GATTGACACCAAAGTTTCTG+AGG + chr1_1:51223842-51223861 Msa0027020:five_prime_UTR 40.0%
CATCTCATCCTCAGAAACTT+TGG - chr1_1:51223853-51223872 None:intergenic 40.0%
GTGAGTGAAGTGTGTTAGTT+TGG - chr1_1:51223897-51223916 None:intergenic 40.0%
CCTTGATGAAGTTGTGTTGT+TGG - chr1_1:51224069-51224088 None:intergenic 40.0%
CCAACAACACAACTTCATCA+AGG + chr1_1:51224066-51224085 Msa0027020:CDS 40.0%
!! CTTCTTCTAGACTTGTTGTC+AGG + chr1_1:51224135-51224154 Msa0027020:CDS 40.0%
TTACCTTAGAACCTCTCTTG+GGG - chr1_1:51224256-51224275 None:intergenic 40.0%
CAACTAAAACTCACTTGGGT+TGG + chr1_1:51224530-51224549 Msa0027020:intron 40.0%
AGGTCTCAAGTCAATATCAC+CGG - chr1_1:51224557-51224576 None:intergenic 40.0%
GTCCACCTAAATTGACACTA+CGG - chr1_1:51224618-51224637 None:intergenic 40.0%
!! TCGGTGATTAGTCTCATAAC+CGG + chr1_1:51224701-51224720 Msa0027020:intron 40.0%
ATAACCGGTCTAAATTGACG+AGG + chr1_1:51224716-51224735 Msa0027020:intron 40.0%
TAACCGGTCTAAATTGACGA+GGG + chr1_1:51224717-51224736 Msa0027020:intron 40.0%
CTCAACAGGTGAAGATTCTT+AGG + chr1_1:51224799-51224818 Msa0027020:intron 40.0%
ACAGGTGAAGATTCTTAGGA+AGG + chr1_1:51224803-51224822 Msa0027020:intron 40.0%
TTCTTAGGAAGGAATCCTAC+TGG + chr1_1:51224814-51224833 Msa0027020:CDS 40.0%
AAGGAATCCTACTGGTACAA+AGG + chr1_1:51224822-51224841 Msa0027020:CDS 40.0%
AACAAGAGCTGAGTTACCAA+TGG - chr1_1:51224931-51224950 None:intergenic 40.0%
!! CGGATTTTTCTTTGTTGTGC+AGG + chr1_1:51224954-51224973 Msa0027020:intron 40.0%
!! GTGCATTGGCCTTAAATGTA+CGG - chr1_1:51225320-51225339 None:intergenic 40.0%
! GTCAATTTCAGTTGGTGCAT+TGG - chr1_1:51225334-51225353 None:intergenic 40.0%
CTTAGTTAGAGTTCGATAGG+AGG + chr1_1:51225488-51225507 Msa0027020:three_prime_UTR 40.0%
TGCACCATATCCCAATCCAT+TGG - chr1_1:51223794-51223813 None:intergenic 45.0%
GTCAATCGTTTCCTCCACTT+GGG - chr1_1:51223829-51223848 None:intergenic 45.0%
TGTCAATCGTTTCCTCCACT+TGG - chr1_1:51223830-51223849 None:intergenic 45.0%
GGTCTCAAGTCAATATCACC+GGG - chr1_1:51224556-51224575 None:intergenic 45.0%
CTCCGTAGTGTCAATTTAGG+TGG + chr1_1:51224613-51224632 Msa0027020:intron 45.0%
! GCTAGTCTACACGGTCAAAT+CGG + chr1_1:51224682-51224701 Msa0027020:intron 45.0%
TCACCCTCGTCAATTTAGAC+CGG - chr1_1:51224723-51224742 None:intergenic 45.0%
CATTGGCGTAGTTCACTTTC+TGG - chr1_1:51225014-51225033 None:intergenic 45.0%
ATGGGCAACTGCACAATGAA+TGG - chr1_1:51225211-51225230 None:intergenic 45.0%
CGGCACTTACATGCCTAATT+AGG - chr1_1:51225300-51225319 None:intergenic 45.0%
TGCACCATATCCCAATCCAT+TGG - chr1_1:51223794-51223813 None:intergenic 45.0%
GTCAATCGTTTCCTCCACTT+GGG - chr1_1:51223829-51223848 None:intergenic 45.0%
TGTCAATCGTTTCCTCCACT+TGG - chr1_1:51223830-51223849 None:intergenic 45.0%
GGTCTCAAGTCAATATCACC+GGG - chr1_1:51224556-51224575 None:intergenic 45.0%
CTCCGTAGTGTCAATTTAGG+TGG + chr1_1:51224613-51224632 Msa0027020:intron 45.0%
! GCTAGTCTACACGGTCAAAT+CGG + chr1_1:51224682-51224701 Msa0027020:intron 45.0%
TCACCCTCGTCAATTTAGAC+CGG - chr1_1:51224723-51224742 None:intergenic 45.0%
CATTGGCGTAGTTCACTTTC+TGG - chr1_1:51225014-51225033 None:intergenic 45.0%
ATGGGCAACTGCACAATGAA+TGG - chr1_1:51225211-51225230 None:intergenic 45.0%
CGGCACTTACATGCCTAATT+AGG - chr1_1:51225300-51225319 None:intergenic 45.0%
CACAAGTGTCATCACCCAAG+TGG + chr1_1:51223812-51223831 Msa0027020:five_prime_UTR 50.0%
AAGTGTCATCACCCAAGTGG+AGG + chr1_1:51223815-51223834 Msa0027020:five_prime_UTR 50.0%
!! ATTGGTGGTGGCTTGGGTTT+AGG - chr1_1:51224230-51224249 None:intergenic 50.0%
AAACCCAAGCCACCACCAAT+TGG + chr1_1:51224230-51224249 Msa0027020:CDS 50.0%
!! AAAACTCACTTGGGTTGGCC+CGG + chr1_1:51224535-51224554 Msa0027020:intron 50.0%
! TTGAAGAGGAGCACACTCTC+AGG - chr1_1:51224577-51224596 None:intergenic 50.0%
! TGAGAGTGTGCTCCTCTTCA+AGG + chr1_1:51224576-51224595 Msa0027020:intron 50.0%
TCGAACCTGAGACCTTGAAG+AGG - chr1_1:51224591-51224610 None:intergenic 50.0%
! TCCTACTGGTACAAAGGCAC+TGG + chr1_1:51224828-51224847 Msa0027020:CDS 50.0%
TCCAGTGCCTTTGTACCAGT+AGG - chr1_1:51224832-51224851 None:intergenic 50.0%
! TCTGGAATCGAACCACGACA+GGG - chr1_1:51224996-51225015 None:intergenic 50.0%
!! TTCTGGAATCGAACCACGAC+AGG - chr1_1:51224997-51225016 None:intergenic 50.0%
CACAAGTGTCATCACCCAAG+TGG + chr1_1:51223812-51223831 Msa0027020:five_prime_UTR 50.0%
AAGTGTCATCACCCAAGTGG+AGG + chr1_1:51223815-51223834 Msa0027020:five_prime_UTR 50.0%
!! ATTGGTGGTGGCTTGGGTTT+AGG - chr1_1:51224230-51224249 None:intergenic 50.0%
AAACCCAAGCCACCACCAAT+TGG + chr1_1:51224230-51224249 Msa0027020:CDS 50.0%
!! AAAACTCACTTGGGTTGGCC+CGG + chr1_1:51224535-51224554 Msa0027020:intron 50.0%
! TTGAAGAGGAGCACACTCTC+AGG - chr1_1:51224577-51224596 None:intergenic 50.0%
! TGAGAGTGTGCTCCTCTTCA+AGG + chr1_1:51224576-51224595 Msa0027020:intron 50.0%
TCGAACCTGAGACCTTGAAG+AGG - chr1_1:51224591-51224610 None:intergenic 50.0%
! TCCTACTGGTACAAAGGCAC+TGG + chr1_1:51224828-51224847 Msa0027020:CDS 50.0%
TCCAGTGCCTTTGTACCAGT+AGG - chr1_1:51224832-51224851 None:intergenic 50.0%
! TCTGGAATCGAACCACGACA+GGG - chr1_1:51224996-51225015 None:intergenic 50.0%
!! TTCTGGAATCGAACCACGAC+AGG - chr1_1:51224997-51225016 None:intergenic 50.0%
AGTCATGGCTAGCAGCAGCA+TGG + chr1_1:51224001-51224020 Msa0027020:exon 55.0%
AGCATGGCATCAGCAGCTAC+TGG + chr1_1:51224017-51224036 Msa0027020:CDS 55.0%
TGTTGTCAGGGCAACCGATG+AGG + chr1_1:51224148-51224167 Msa0027020:CDS 55.0%
! GGTGGCTTGGGTTTAGGAGT+AGG - chr1_1:51224224-51224243 None:intergenic 55.0%
GAACCTCTCTTGGGGCCAAT+TGG - chr1_1:51224248-51224267 None:intergenic 55.0%
TGGCCCCAAGAGAGGTTCTA+AGG + chr1_1:51224250-51224269 Msa0027020:CDS 55.0%
GTGCTCCTCTTCAAGGTCTC+AGG + chr1_1:51224583-51224602 Msa0027020:intron 55.0%
ACGACAGGGTAGCGAGTCTT+GGG - chr1_1:51224982-51225001 None:intergenic 55.0%
AGTCATGGCTAGCAGCAGCA+TGG + chr1_1:51224001-51224020 Msa0027020:exon 55.0%
AGCATGGCATCAGCAGCTAC+TGG + chr1_1:51224017-51224036 Msa0027020:CDS 55.0%
TGTTGTCAGGGCAACCGATG+AGG + chr1_1:51224148-51224167 Msa0027020:CDS 55.0%
! GGTGGCTTGGGTTTAGGAGT+AGG - chr1_1:51224224-51224243 None:intergenic 55.0%
GAACCTCTCTTGGGGCCAAT+TGG - chr1_1:51224248-51224267 None:intergenic 55.0%
TGGCCCCAAGAGAGGTTCTA+AGG + chr1_1:51224250-51224269 Msa0027020:CDS 55.0%
GTGCTCCTCTTCAAGGTCTC+AGG + chr1_1:51224583-51224602 Msa0027020:intron 55.0%
ACGACAGGGTAGCGAGTCTT+GGG - chr1_1:51224982-51225001 None:intergenic 55.0%
ATCACCAGCTGGAGCAGTGG+AGG - chr1_1:51224195-51224214 None:intergenic 60.0%
AGCATCACCAGCTGGAGCAG+TGG - chr1_1:51224198-51224217 None:intergenic 60.0%
GTAGGAGCAGCATCACCAGC+TGG - chr1_1:51224206-51224225 None:intergenic 60.0%
!! GGGCCAATTGGTGGTGGCTT+GGG - chr1_1:51224236-51224255 None:intergenic 60.0%
CTCTTGGGGCCAATTGGTGG+TGG - chr1_1:51224242-51224261 None:intergenic 60.0%
CCTCTCTTGGGGCCAATTGG+TGG - chr1_1:51224245-51224264 None:intergenic 60.0%
CCACCAATTGGCCCCAAGAG+AGG + chr1_1:51224242-51224261 Msa0027020:CDS 60.0%
CGACAGGGTAGCGAGTCTTG+GGG - chr1_1:51224981-51225000 None:intergenic 60.0%
CACGACAGGGTAGCGAGTCT+TGG - chr1_1:51224983-51225002 None:intergenic 60.0%
CAAGACTCGCTACCCTGTCG+TGG + chr1_1:51224981-51225000 Msa0027020:CDS 60.0%
ATCACCAGCTGGAGCAGTGG+AGG - chr1_1:51224195-51224214 None:intergenic 60.0%
AGCATCACCAGCTGGAGCAG+TGG - chr1_1:51224198-51224217 None:intergenic 60.0%
GTAGGAGCAGCATCACCAGC+TGG - chr1_1:51224206-51224225 None:intergenic 60.0%
!! GGGCCAATTGGTGGTGGCTT+GGG - chr1_1:51224236-51224255 None:intergenic 60.0%
CTCTTGGGGCCAATTGGTGG+TGG - chr1_1:51224242-51224261 None:intergenic 60.0%
CCTCTCTTGGGGCCAATTGG+TGG - chr1_1:51224245-51224264 None:intergenic 60.0%
CCACCAATTGGCCCCAAGAG+AGG + chr1_1:51224242-51224261 Msa0027020:CDS 60.0%
CGACAGGGTAGCGAGTCTTG+GGG - chr1_1:51224981-51225000 None:intergenic 60.0%
CACGACAGGGTAGCGAGTCT+TGG - chr1_1:51224983-51225002 None:intergenic 60.0%
CAAGACTCGCTACCCTGTCG+TGG + chr1_1:51224981-51225000 Msa0027020:CDS 60.0%
!! GGGGCCAATTGGTGGTGGCT+TGG - chr1_1:51224237-51224256 None:intergenic 65.0%
!! GGGGCCAATTGGTGGTGGCT+TGG - chr1_1:51224237-51224256 None:intergenic 65.0%
GGCAACCGATGAGGCTGCCC+CGG + chr1_1:51224157-51224176 Msa0027020:CDS 70.0%
TGCAGCCGGGGCAGCCTCAT+CGG - chr1_1:51224165-51224184 None:intergenic 70.0%
TGGAGGCAGCAGGTGCAGCC+GGG - chr1_1:51224178-51224197 None:intergenic 70.0%
GTGGAGGCAGCAGGTGCAGC+CGG - chr1_1:51224179-51224198 None:intergenic 70.0%
GCTGGAGCAGTGGAGGCAGC+AGG - chr1_1:51224188-51224207 None:intergenic 70.0%
GCTGCCTCCACTGCTCCAGC+TGG + chr1_1:51224188-51224207 Msa0027020:CDS 70.0%
GGCAACCGATGAGGCTGCCC+CGG + chr1_1:51224157-51224176 Msa0027020:CDS 70.0%
TGCAGCCGGGGCAGCCTCAT+CGG - chr1_1:51224165-51224184 None:intergenic 70.0%
TGGAGGCAGCAGGTGCAGCC+GGG - chr1_1:51224178-51224197 None:intergenic 70.0%
GTGGAGGCAGCAGGTGCAGC+CGG - chr1_1:51224179-51224198 None:intergenic 70.0%
GCTGGAGCAGTGGAGGCAGC+AGG - chr1_1:51224188-51224207 None:intergenic 70.0%
GCTGCCTCCACTGCTCCAGC+TGG + chr1_1:51224188-51224207 Msa0027020:CDS 70.0%
GGAGGCAGCAGGTGCAGCCG+GGG - chr1_1:51224177-51224196 None:intergenic 75.0%
GGAGGCAGCAGGTGCAGCCG+GGG - chr1_1:51224177-51224196 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 51223735 51225577 51223735 ID=Msa0027020;Name=Msa0027020
chr1_1 mRNA 51223735 51225577 51223735 ID=Msa0027020-mRNA-1;Parent=Msa0027020;Name=Msa0027020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=270|1|1|1|1|1|3|497|145
chr1_1 exon 51223735 51224271 51223735 ID=Msa0027020-mRNA-1:exon:14916;Parent=Msa0027020-mRNA-1
chr1_1 exon 51224807 51224872 51224807 ID=Msa0027020-mRNA-1:exon:14917;Parent=Msa0027020-mRNA-1
chr1_1 exon 51224976 51225577 51224976 ID=Msa0027020-mRNA-1:exon:14918;Parent=Msa0027020-mRNA-1
chr1_1 five_prime_UTR 51223735 51224004 51223735 ID=Msa0027020-mRNA-1:five_prime_utr;Parent=Msa0027020-mRNA-1
chr1_1 CDS 51224005 51224271 51224005 ID=Msa0027020-mRNA-1:cds;Parent=Msa0027020-mRNA-1
chr1_1 CDS 51224807 51224872 51224807 ID=Msa0027020-mRNA-1:cds;Parent=Msa0027020-mRNA-1
chr1_1 CDS 51224976 51225080 51224976 ID=Msa0027020-mRNA-1:cds;Parent=Msa0027020-mRNA-1
chr1_1 three_prime_UTR 51225081 51225577 51225081 ID=Msa0027020-mRNA-1:three_prime_utr;Parent=Msa0027020-mRNA-1
Gene Sequence

>Msa0027020

ATGGCTAGCAGCAGCATGGCATCAGCAGCTACTGGATTTTTGTTGTCACTTAATGTTGCTGCCAACAACACAACTTCATCAAGGAGTACCATGTTGATGTTCCCTTTAAAGTCCAACAATATTGGTTCTTCTTCTTCTAGACTTGTTGTCAGGGCAACCGATGAGGCTGCCCCGGCTGCACCTGCTGCCTCCACTGCTCCAGCTGGTGATGCTGCTCCTACTCCTAAACCCAAGCCACCACCAATTGGCCCCAAGAGAGGTTCTAAGGTGAAGATTCTTAGGAAGGAATCCTACTGGTACAAAGGCACTGGATCAGTTGTTGCTGTTGATCAAGACCCCAAGACTCGCTACCCTGTCGTGGTTCGATTCCAGAAAGTGAACTACGCCAATGTATCGACAAATAACTATGCTTTGGATGAGATTGAAGAAGTTGTTTAA

Protein sequence

>Msa0027020

MASSSMASAATGFLLSLNVAANNTTSSRSTMLMFPLKSNNIGSSSSRLVVRATDEAAPAAPAASTAPAGDAAPTPKPKPPPIGPKRGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFQKVNYANVSTNNYALDEIEEVV*