AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1434860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1434860 MtrunA17_Chr2g0279001 99.617 261 1 0 1 261 1 261 0.0 514
Msa1434860 MtrunA17_Chr3g0133901 42.523 214 96 6 42 249 43 235 4.02e-41 142
Msa1434860 MtrunA17_Chr2g0301081 45.745 188 69 5 73 249 72 237 2.34e-40 140
Msa1434860 MtrunA17_Chr8g0345631 38.835 206 97 5 49 248 55 237 1.39e-35 127
Msa1434860 MtrunA17_Chr3g0092091 36.471 255 117 9 12 259 17 233 1.67e-32 119
Msa1434860 MtrunA17_Chr3g0113311 32.800 250 78 7 60 257 60 271 2.43e-29 112
Msa1434860 MtrunA17_Chr4g0006181 33.591 259 82 7 51 257 106 326 2.59e-29 113
Msa1434860 MtrunA17_Chr5g0448421 35.567 194 91 8 75 249 69 247 4.07e-25 100
Msa1434860 MtrunA17_Chr5g0448411 35.567 194 91 8 75 249 67 245 1.49e-24 99.0
Msa1434860 MtrunA17_Chr6g0462031 33.673 196 80 6 59 243 48 204 2.79e-21 89.7
Msa1434860 MtrunA17_Chr2g0318521 34.615 208 86 7 73 259 63 241 6.14e-21 89.0
Msa1434860 MtrunA17_Chr4g0051941 33.816 207 87 8 73 259 67 243 4.86e-18 81.3
Msa1434860 MtrunA17_Chr5g0447531 32.850 207 89 7 73 259 66 242 1.26e-17 80.1
Msa1434860 MtrunA17_Chr6g0453181 33.333 207 88 8 73 259 66 242 1.28e-17 80.1
Msa1434860 MtrunA17_Chr6g0453151 32.850 207 89 8 73 259 133 309 3.18e-17 79.7
Msa1434860 MtrunA17_Chr6g0453141 31.884 207 91 7 73 259 66 242 4.93e-17 78.6
Msa1434860 MtrunA17_Chr1g0157481 32.035 231 115 7 50 256 96 308 5.29e-17 79.3
Msa1434860 MtrunA17_Chr6g0453161 32.850 207 89 8 73 259 68 244 8.22e-17 79.7
Msa1434860 MtrunA17_Chr6g0453161 33.333 207 88 8 73 259 333 509 9.20e-17 79.3
Msa1434860 MtrunA17_Chr6g0476641 32.569 218 122 8 40 249 52 252 4.45e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1434860 AT1G15820.1 82.375 261 43 1 1 261 1 258 2.94e-152 425
Msa1434860 AT1G45474.2 40.566 212 100 6 49 254 38 229 1.28e-37 133
Msa1434860 AT1G45474.1 40.566 212 100 6 49 254 38 229 1.28e-37 133
Msa1434860 AT1G19150.1 43.716 183 80 4 73 249 75 240 2.55e-37 132
Msa1434860 AT3G61470.1 38.140 215 104 5 40 248 35 226 1.34e-35 128
Msa1434860 AT3G47470.1 34.263 251 119 9 17 259 22 234 1.32e-29 112
Msa1434860 AT5G01530.1 34.538 249 73 8 60 256 58 268 5.26e-29 111
Msa1434860 AT3G08940.2 32.721 272 90 9 38 257 36 266 2.25e-28 109
Msa1434860 AT3G54890.1 36.916 214 83 7 59 259 47 221 4.82e-26 102
Msa1434860 AT1G61520.3 33.766 231 117 9 39 248 27 242 2.53e-25 101
Msa1434860 AT1G61520.1 33.766 231 117 9 39 248 27 242 2.53e-25 101
Msa1434860 AT3G54890.4 35.979 189 71 6 59 236 47 196 1.36e-22 92.8
Msa1434860 AT5G54270.1 33.333 246 103 9 39 259 33 242 6.39e-22 92.0
Msa1434860 AT1G61520.2 34.392 189 90 8 79 248 14 187 1.13e-21 90.5
Msa1434860 AT2G34430.1 34.783 207 86 9 73 259 66 243 4.48e-18 81.6
Msa1434860 AT1G29920.1 34.300 207 87 9 73 259 67 244 4.69e-18 81.6
Msa1434860 AT1G29910.1 34.300 207 87 9 73 259 67 244 4.69e-18 81.6
Msa1434860 AT2G34420.1 34.783 207 86 9 73 259 65 242 4.69e-18 81.6
Msa1434860 AT1G29930.1 34.300 207 87 9 73 259 67 244 5.79e-18 81.3
Msa1434860 AT3G27690.1 30.385 260 123 10 26 259 16 243 6.25e-18 81.3
Msa1434860 AT3G27690.2 30.385 260 123 10 26 259 48 275 7.07e-18 81.6
Msa1434860 AT2G05100.1 32.850 207 89 8 73 259 66 242 2.90e-17 79.3
Msa1434860 AT2G05070.1 32.850 207 89 8 73 259 66 242 3.27e-17 79.3
Msa1434860 AT3G54890.3 54.667 75 28 1 59 133 47 115 7.62e-17 76.3
Msa1434860 AT2G05100.2 32.653 196 83 7 73 249 66 231 1.27e-16 78.6
Msa1434860 AT3G54890.2 54.667 75 28 1 59 133 47 115 2.02e-16 75.9
Msa1434860 AT4G10340.1 31.383 188 92 6 73 249 82 243 6.31e-15 73.2

Find 125 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATATCGTGGATAGATTT+TGG 0.159030 tig0027594:-20437 None:intergenic
TTCTCCTTTGGTACTCTTCT+AGG 0.198477 tig0027594:+21303 Msa1434860:CDS
GTTCTTTGTGACTTTGAAAA+AGG 0.201787 tig0027594:-21953 None:intergenic
TTGGGATCTTCCTTCTTATC+TGG 0.220925 tig0027594:+20674 Msa1434860:CDS
TACGATCCATCGAGCCATTC+TGG 0.222067 tig0027594:-20854 None:intergenic
AAACAAATGTAAAGATAAAT+TGG 0.228865 tig0027594:+21906 Msa1434860:three_prime_UTR
CTCTCTAGCTTCTCTGTATC+TGG 0.252195 tig0027594:-21531 None:intergenic
TTCGACCCATTGTCCCTTGC+TGG 0.300502 tig0027594:+21483 Msa1434860:CDS
CCTTCTTTGAAAACCCCTTC+AGG 0.303401 tig0027594:+20497 Msa1434860:five_prime_UTR
CATTCGATTGACTGTGAATC+CGG 0.308951 tig0027594:-21384 None:intergenic
ATTTCCATCCTAAGCTGATT+TGG 0.310470 tig0027594:-20399 None:intergenic
CCAGGGATCCATGACTTCTT+TGG 0.326294 tig0027594:-20803 None:intergenic
TGGGCAATGGCTGCAGTTCT+AGG 0.329531 tig0027594:+21207 Msa1434860:CDS
GTTAGACTTTGTATGCATAT+TGG 0.335078 tig0027594:-21861 None:intergenic
GATGGAAATCCATTTCCTAT+TGG 0.344286 tig0027594:+20413 Msa1434860:five_prime_UTR
AAGACTCCCCTTGGTGCTCT+TGG 0.346873 tig0027594:+21633 Msa1434860:CDS
TTGTTAGCTACTACTGCTAT+TGG 0.371726 tig0027594:+20716 Msa1434860:CDS
TCTAGGCATCTTTGTTGGTC+AGG 0.375207 tig0027594:+21224 Msa1434860:CDS
GCAATTGCTCCATTCTCCTT+TGG 0.375390 tig0027594:+21291 Msa1434860:CDS
GGTGCTGTGTTGAATGGTTT+GGG 0.386787 tig0027594:+20656 Msa1434860:CDS
AGAGAAGCTGAGCTTATTCA+TGG 0.388496 tig0027594:+21180 Msa1434860:CDS
TATGGATCAAACAGATATAT+AGG 0.394006 tig0027594:-21829 None:intergenic
CTGTACCATTTGAGAAATGC+TGG 0.410852 tig0027594:-21159 None:intergenic
TGGTGCTGTGTTGAATGGTT+TGG 0.411606 tig0027594:+20655 Msa1434860:CDS
TGGATCCCTGGTGTTAGATT+TGG 0.414159 tig0027594:+20815 Msa1434860:CDS
CCCTGGGTAGCCTTGTTCTC+CGG 0.423395 tig0027594:-21451 None:intergenic
TTTAATTCATGTTCTAATGT+TGG 0.424794 tig0027594:+21750 Msa1434860:three_prime_UTR
GAGAATGGAGCAATTGCATT+GGG 0.424903 tig0027594:-21285 None:intergenic
CCTTCTTATCTGGAGGTAAG+AGG 0.427547 tig0027594:+20684 Msa1434860:CDS
ACCAGCTGCAACACCACCTT+TGG 0.430059 tig0027594:-20741 None:intergenic
ACGATCCATCGAGCCATTCT+GGG 0.431920 tig0027594:-20853 None:intergenic
AGGCACTCAGTTGATTCTCA+TGG 0.436916 tig0027594:+21323 Msa1434860:CDS
AATCTAAACAAGAAATCTTA+AGG 0.438847 tig0027594:-20458 None:intergenic
GAAGCTAGAGAGATTGAAAC+TGG 0.439049 tig0027594:+21542 Msa1434860:CDS
TGTAGATTACCAGGTGACTT+TGG 0.442105 tig0027594:+21108 Msa1434860:intron
CTCAGTTGATTCTCATGGGG+TGG 0.444041 tig0027594:+21328 Msa1434860:CDS
CAAATGGCAGCTGCAACATC+TGG 0.450920 tig0027594:+20635 Msa1434860:exon
GCAGTTCTAGGCATCTTTGT+TGG 0.454175 tig0027594:+21219 Msa1434860:CDS
GCATGCTAGGCTTGCTATGT+TGG 0.454270 tig0027594:+21575 Msa1434860:CDS
GGCACTCAGTTGATTCTCAT+GGG 0.454921 tig0027594:+21324 Msa1434860:CDS
GCATATTGGCTACACATGTA+TGG 0.459520 tig0027594:-21847 None:intergenic
GGAGTTCCATGGTTTGAGGC+TGG 0.459578 tig0027594:+21255 Msa1434860:CDS
CAGTAGTAGCTAACAAGGTT+TGG 0.464458 tig0027594:-20709 None:intergenic
GCATCTTTGTTGGTCAGGCA+TGG 0.465448 tig0027594:+21229 Msa1434860:CDS
ACATCTGGTGCTGTGTTGAA+TGG 0.470993 tig0027594:+20650 Msa1434860:CDS
ATCCCTGGTGTTAGATTTGG+TGG 0.473436 tig0027594:+20818 Msa1434860:CDS
TTAGATTTCATTGTCCTACA+TGG 0.477009 tig0027594:+20474 Msa1434860:five_prime_UTR
GAGAACTTTGCTAATGCAAC+CGG 0.479444 tig0027594:+21432 Msa1434860:CDS
GGTTGCATTAGCAAAGTTCT+CGG 0.480106 tig0027594:-21430 None:intergenic
GGTCCTTGCCAAGGCCTAGT+GGG 0.484093 tig0027594:-21137 None:intergenic
AGTGTAAAAGATAAGACAAA+TGG 0.491353 tig0027594:+20619 Msa1434860:exon
GGGTCCTTGCCAAGGCCTAG+TGG 0.496533 tig0027594:-21138 None:intergenic
AACATGAATTAAATTTGTCA+TGG 0.501644 tig0027594:-21740 None:intergenic
CCGGAGAACAAGGCTACCCA+GGG 0.503852 tig0027594:+21451 Msa1434860:CDS
AGGACCCAGCATTTCTCAAA+TGG 0.509475 tig0027594:+21154 Msa1434860:CDS
CTTGCTGGTACCATCGAAAA+CGG 0.510039 tig0027594:+21498 Msa1434860:CDS
AGAAGAGTACCAAAGGAGAA+TGG 0.511148 tig0027594:-21300 None:intergenic
CCTCTTACCTCCAGATAAGA+AGG 0.513918 tig0027594:-20684 None:intergenic
AGGCATGGAGTGGAGTTCCA+TGG 0.514110 tig0027594:+21244 Msa1434860:CDS
TTCTACTTTGAAGCTGGACA+AGG 0.520216 tig0027594:+21609 Msa1434860:CDS
ACCGGAGAACAAGGCTACCC+AGG 0.521424 tig0027594:+21450 Msa1434860:CDS
GTTGGAAGCCAAATCAGCTT+AGG 0.521590 tig0027594:+20391 Msa1434860:five_prime_UTR
TTTGTTGGTCAGGCATGGAG+TGG 0.524108 tig0027594:+21234 Msa1434860:CDS
CCAAAGAAGTCATGGATCCC+TGG 0.525917 tig0027594:+20803 Msa1434860:CDS
TGGCTGAGATTAAGCATGCT+AGG 0.527131 tig0027594:+21562 Msa1434860:CDS
ATTCGATTGACTGTGAATCC+GGG 0.527520 tig0027594:-21383 None:intergenic
TGGTACCAGCAAGGGACAAT+GGG 0.528256 tig0027594:-21488 None:intergenic
TGTCATGGAGTAGCACACTT+AGG 0.529326 tig0027594:-21725 None:intergenic
GCCAAAGGTGGTGTTGCAGC+TGG 0.535237 tig0027594:+20740 Msa1434860:CDS
GGATTCACAGTCAATCGAAT+GGG 0.537483 tig0027594:+21386 Msa1434860:CDS
GGATCTTCCTTCTTATCTGG+AGG 0.538000 tig0027594:+20677 Msa1434860:CDS
CTTCTGCACCAAAGAAGTCA+TGG 0.541838 tig0027594:+20795 Msa1434860:CDS
TACCTTCTTGCTTATGACAA+AGG 0.544227 tig0027594:-21883 None:intergenic
GGAGAATGGAGCAATTGCAT+TGG 0.544242 tig0027594:-21286 None:intergenic
CTGAGCTTATTCATGGAAGG+TGG 0.544781 tig0027594:+21187 Msa1434860:CDS
TCAGTTGATTCTCATGGGGT+GGG 0.544833 tig0027594:+21329 Msa1434860:CDS
AGTAATAGTCTAATAGAGAC+TGG 0.547120 tig0027594:-20580 None:intergenic
GAAACCTCGTCGACCCAGAA+TGG 0.547423 tig0027594:+20840 Msa1434860:CDS
GAGTGGAGTTCCATGGTTTG+AGG 0.550527 tig0027594:+21251 Msa1434860:CDS
TCAGCTCCAGCCTCAAACCA+TGG 0.554373 tig0027594:-21261 None:intergenic
ATGGTACCAGCAAGGGACAA+TGG 0.556874 tig0027594:-21489 None:intergenic
AACCTTTGTCATAAGCAAGA+AGG 0.557195 tig0027594:+21881 Msa1434860:three_prime_UTR
GGACAAGGGAAGACTCCCCT+TGG 0.557324 tig0027594:+21624 Msa1434860:CDS
GTGGGTAGAGAGCAAGAGAT+GGG 0.560152 tig0027594:+21347 Msa1434860:CDS
CGGATTCACAGTCAATCGAA+TGG 0.566881 tig0027594:+21385 Msa1434860:CDS
GCTAATGCAACCGGAGAACA+AGG 0.571637 tig0027594:+21441 Msa1434860:CDS
GAACATGGTGTCCACGTGGT+TGG 0.584310 tig0027594:+20373 Msa1434860:five_prime_UTR
TTACAAGCCAAGAGCACCAA+GGG 0.584331 tig0027594:-21640 None:intergenic
TATTCATGGAAGGTGGGCAA+TGG 0.584518 tig0027594:+21194 Msa1434860:CDS
CAATCGAATGGGCCACTCCA+TGG 0.585992 tig0027594:+21397 Msa1434860:CDS
GGTGGGTAGAGAGCAAGAGA+TGG 0.588337 tig0027594:+21346 Msa1434860:CDS
TTTCCACCAAATCTAACACC+AGG 0.597681 tig0027594:-20821 None:intergenic
AATAGCAGTAGTAGCTAACA+AGG 0.598050 tig0027594:-20714 None:intergenic
GAAGCCAAATCAGCTTAGGA+TGG 0.598596 tig0027594:+20395 Msa1434860:five_prime_UTR
AGAAATCTTAAGGTATATCG+TGG 0.599963 tig0027594:-20448 None:intergenic
TGACCCACTAGGCCTTGGCA+AGG 0.602653 tig0027594:+21134 Msa1434860:CDS
GAAATGCTGGGTCCTTGCCA+AGG 0.604301 tig0027594:-21146 None:intergenic
TGAGCTTATTCATGGAAGGT+GGG 0.606190 tig0027594:+21188 Msa1434860:CDS
ATAGAAAGAGCACAGTGGAG+TGG 0.606414 tig0027594:+20351 Msa1434860:five_prime_UTR
AAGCTGAGCTTATTCATGGA+AGG 0.607522 tig0027594:+21184 Msa1434860:CDS
AGTGCCTAGAAGAGTACCAA+AGG 0.608047 tig0027594:-21307 None:intergenic
TGTACCATTTGAGAAATGCT+GGG 0.608952 tig0027594:-21158 None:intergenic
GAGCACAGTGGAGTGGAACA+TGG 0.610835 tig0027594:+20358 Msa1434860:five_prime_UTR
ATGGGTCGATTTCTTCAACC+CGG 0.612388 tig0027594:+21365 Msa1434860:CDS
CAGATATATAGGTAAATGCA+AGG 0.612552 tig0027594:-21818 None:intergenic
GTCGACCCAGAATGGCTCGA+TGG 0.628418 tig0027594:+20848 Msa1434860:CDS
ACTACTGCTATTGGAGCCAA+AGG 0.636609 tig0027594:+20725 Msa1434860:CDS
CGAGCCATTCTGGGTCGACG+AGG 0.636930 tig0027594:-20844 None:intergenic
GCACTCAGTTGATTCTCATG+GGG 0.642271 tig0027594:+21325 Msa1434860:CDS
GGGTCAAAACCAAAGTCACC+TGG 0.643002 tig0027594:-21117 None:intergenic
ACTGCTATTGGAGCCAAAGG+TGG 0.648832 tig0027594:+20728 Msa1434860:CDS
TTTACAAGCCAAGAGCACCA+AGG 0.650086 tig0027594:-21641 None:intergenic
TCTACTTTGAAGCTGGACAA+GGG 0.657323 tig0027594:+21610 Msa1434860:CDS
TGTGTGAGAGAGAACCTGAA+GGG 0.667684 tig0027594:-20511 None:intergenic
AGAATGGAGCAATTGCATTG+GGG 0.695433 tig0027594:-21284 None:intergenic
TGCATTAGCAAAGTTCTCGG+CGG 0.703055 tig0027594:-21427 None:intergenic
TGATTTGGCTTCCAACCACG+TGG 0.709465 tig0027594:-20384 None:intergenic
TTCCACCAAATCTAACACCA+GGG 0.730328 tig0027594:-20820 None:intergenic
GGAGAACAAGGCTACCCAGG+GGG 0.731673 tig0027594:+21453 Msa1434860:CDS
GTGTGTGAGAGAGAACCTGA+AGG 0.733454 tig0027594:-20512 None:intergenic
AGTGGAACATGGTGTCCACG+TGG 0.737131 tig0027594:+20369 Msa1434860:five_prime_UTR
CGGAGAACAAGGCTACCCAG+GGG 0.738163 tig0027594:+21452 Msa1434860:CDS
TACAAGCCAAGAGCACCAAG+GGG 0.741553 tig0027594:-21639 None:intergenic
AAAAGATAGAAAGAGCACAG+TGG 0.743548 tig0027594:+20346 Msa1434860:five_prime_UTR
GTGTGAGAGAGAACCTGAAG+GGG 0.761994 tig0027594:-20510 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATAATCAATTCTAA+AGG - tig0027594:20906-20925 None:intergenic 15.0%
!! AAACAAATGTAAAGATAAAT+TGG + tig0027594:21906-21925 Msa1434860:three_prime_UTR 15.0%
!! GAAAAAATAATCAATTCTAA+AGG - tig0027594:20906-20925 None:intergenic 15.0%
!! AAACAAATGTAAAGATAAAT+TGG + tig0027594:21906-21925 Msa1434860:three_prime_UTR 15.0%
!! AATCTAAACAAGAAATCTTA+AGG - tig0027594:20461-20480 None:intergenic 20.0%
!!! TAAAATCGATTTAAGTTAAG+TGG - tig0027594:20883-20902 None:intergenic 20.0%
!! AATAAATTTAAGTAAACGTG+TGG - tig0027594:20969-20988 None:intergenic 20.0%
!! AACATGAATTAAATTTGTCA+TGG - tig0027594:21743-21762 None:intergenic 20.0%
!! TTTAATTCATGTTCTAATGT+TGG + tig0027594:21750-21769 Msa1434860:three_prime_UTR 20.0%
!! AATCTAAACAAGAAATCTTA+AGG - tig0027594:20461-20480 None:intergenic 20.0%
!!! TAAAATCGATTTAAGTTAAG+TGG - tig0027594:20883-20902 None:intergenic 20.0%
!! AATAAATTTAAGTAAACGTG+TGG - tig0027594:20969-20988 None:intergenic 20.0%
!! AACATGAATTAAATTTGTCA+TGG - tig0027594:21743-21762 None:intergenic 20.0%
!! TTTAATTCATGTTCTAATGT+TGG + tig0027594:21750-21769 Msa1434860:three_prime_UTR 20.0%
! AGTGTAAAAGATAAGACAAA+TGG + tig0027594:20619-20638 Msa1434860:exon 25.0%
!!! TTTTTCAATTGTAGATTACC+AGG + tig0027594:21099-21118 Msa1434860:intron 25.0%
! TATGGATCAAACAGATATAT+AGG - tig0027594:21832-21851 None:intergenic 25.0%
! AGTGTAAAAGATAAGACAAA+TGG + tig0027594:20619-20638 Msa1434860:exon 25.0%
!!! TTTTTCAATTGTAGATTACC+AGG + tig0027594:21099-21118 Msa1434860:intron 25.0%
! TATGGATCAAACAGATATAT+AGG - tig0027594:21832-21851 None:intergenic 25.0%
AGAAATCTTAAGGTATATCG+TGG - tig0027594:20451-20470 None:intergenic 30.0%
TTAGATTTCATTGTCCTACA+TGG + tig0027594:20474-20493 Msa1434860:five_prime_UTR 30.0%
AGTAATAGTCTAATAGAGAC+TGG - tig0027594:20583-20602 None:intergenic 30.0%
AATTTAAGTAAACGTGTGGA+AGG - tig0027594:20965-20984 None:intergenic 30.0%
CAGATATATAGGTAAATGCA+AGG - tig0027594:21821-21840 None:intergenic 30.0%
GTTAGACTTTGTATGCATAT+TGG - tig0027594:21864-21883 None:intergenic 30.0%
AGAAATCTTAAGGTATATCG+TGG - tig0027594:20451-20470 None:intergenic 30.0%
TTAGATTTCATTGTCCTACA+TGG + tig0027594:20474-20493 Msa1434860:five_prime_UTR 30.0%
AGTAATAGTCTAATAGAGAC+TGG - tig0027594:20583-20602 None:intergenic 30.0%
AATTTAAGTAAACGTGTGGA+AGG - tig0027594:20965-20984 None:intergenic 30.0%
CAGATATATAGGTAAATGCA+AGG - tig0027594:21821-21840 None:intergenic 30.0%
GTTAGACTTTGTATGCATAT+TGG - tig0027594:21864-21883 None:intergenic 30.0%
! AAAAGATAGAAAGAGCACAG+TGG + tig0027594:20346-20365 Msa1434860:five_prime_UTR 35.0%
ATTTCCATCCTAAGCTGATT+TGG - tig0027594:20402-20421 None:intergenic 35.0%
GATGGAAATCCATTTCCTAT+TGG + tig0027594:20413-20432 Msa1434860:five_prime_UTR 35.0%
! GATTTTGGACCAATAGGAAA+TGG - tig0027594:20425-20444 None:intergenic 35.0%
! TGGATAGATTTTGGACCAAT+AGG - tig0027594:20431-20450 None:intergenic 35.0%
! GGTATATCGTGGATAGATTT+TGG - tig0027594:20440-20459 None:intergenic 35.0%
AATAGCAGTAGTAGCTAACA+AGG - tig0027594:20717-20736 None:intergenic 35.0%
TTGTTAGCTACTACTGCTAT+TGG + tig0027594:20716-20735 Msa1434860:CDS 35.0%
! GCAGCAACAATAAGTCTTTT+AGG - tig0027594:20770-20789 None:intergenic 35.0%
TGTACCATTTGAGAAATGCT+GGG - tig0027594:21161-21180 None:intergenic 35.0%
! AATGTAAACTCCGTTTTCGA+TGG - tig0027594:21511-21530 None:intergenic 35.0%
!!! CTGATTTTCTACTTTGAAGC+TGG + tig0027594:21603-21622 Msa1434860:CDS 35.0%
AACCTTTGTCATAAGCAAGA+AGG + tig0027594:21881-21900 Msa1434860:three_prime_UTR 35.0%
TACCTTCTTGCTTATGACAA+AGG - tig0027594:21886-21905 None:intergenic 35.0%
! AAAAGATAGAAAGAGCACAG+TGG + tig0027594:20346-20365 Msa1434860:five_prime_UTR 35.0%
ATTTCCATCCTAAGCTGATT+TGG - tig0027594:20402-20421 None:intergenic 35.0%
GATGGAAATCCATTTCCTAT+TGG + tig0027594:20413-20432 Msa1434860:five_prime_UTR 35.0%
! GATTTTGGACCAATAGGAAA+TGG - tig0027594:20425-20444 None:intergenic 35.0%
! TGGATAGATTTTGGACCAAT+AGG - tig0027594:20431-20450 None:intergenic 35.0%
! GGTATATCGTGGATAGATTT+TGG - tig0027594:20440-20459 None:intergenic 35.0%
AATAGCAGTAGTAGCTAACA+AGG - tig0027594:20717-20736 None:intergenic 35.0%
TTGTTAGCTACTACTGCTAT+TGG + tig0027594:20716-20735 Msa1434860:CDS 35.0%
! GCAGCAACAATAAGTCTTTT+AGG - tig0027594:20770-20789 None:intergenic 35.0%
TGTACCATTTGAGAAATGCT+GGG - tig0027594:21161-21180 None:intergenic 35.0%
! AATGTAAACTCCGTTTTCGA+TGG - tig0027594:21511-21530 None:intergenic 35.0%
!!! CTGATTTTCTACTTTGAAGC+TGG + tig0027594:21603-21622 Msa1434860:CDS 35.0%
AACCTTTGTCATAAGCAAGA+AGG + tig0027594:21881-21900 Msa1434860:three_prime_UTR 35.0%
TACCTTCTTGCTTATGACAA+AGG - tig0027594:21886-21905 None:intergenic 35.0%
! GTTTTCAAAGAAGGCCATGT+AGG - tig0027594:20491-20510 None:intergenic 40.0%
!!! GACTGGTTTTGTAGTTCACT+TGG - tig0027594:20566-20585 None:intergenic 40.0%
TTGGGATCTTCCTTCTTATC+TGG + tig0027594:20674-20693 Msa1434860:CDS 40.0%
CAGTAGTAGCTAACAAGGTT+TGG - tig0027594:20712-20731 None:intergenic 40.0%
TTCCACCAAATCTAACACCA+GGG - tig0027594:20823-20842 None:intergenic 40.0%
TTTCCACCAAATCTAACACC+AGG - tig0027594:20824-20843 None:intergenic 40.0%
TGTAGATTACCAGGTGACTT+TGG + tig0027594:21108-21127 Msa1434860:intron 40.0%
CTGTACCATTTGAGAAATGC+TGG - tig0027594:21162-21181 None:intergenic 40.0%
AGAGAAGCTGAGCTTATTCA+TGG + tig0027594:21180-21199 Msa1434860:CDS 40.0%
AAGCTGAGCTTATTCATGGA+AGG + tig0027594:21184-21203 Msa1434860:CDS 40.0%
TGAGCTTATTCATGGAAGGT+GGG + tig0027594:21188-21207 Msa1434860:CDS 40.0%
AGAATGGAGCAATTGCATTG+GGG - tig0027594:21287-21306 None:intergenic 40.0%
GAGAATGGAGCAATTGCATT+GGG - tig0027594:21288-21307 None:intergenic 40.0%
!! AGAAGAGTACCAAAGGAGAA+TGG - tig0027594:21303-21322 None:intergenic 40.0%
TTCTCCTTTGGTACTCTTCT+AGG + tig0027594:21303-21322 Msa1434860:CDS 40.0%
ATTCGATTGACTGTGAATCC+GGG - tig0027594:21386-21405 None:intergenic 40.0%
CATTCGATTGACTGTGAATC+CGG - tig0027594:21387-21406 None:intergenic 40.0%
GGATTCACAGTCAATCGAAT+GGG + tig0027594:21386-21405 Msa1434860:CDS 40.0%
GGTTGCATTAGCAAAGTTCT+CGG - tig0027594:21433-21452 None:intergenic 40.0%
GAGAACTTTGCTAATGCAAC+CGG + tig0027594:21432-21451 Msa1434860:CDS 40.0%
GAAGCTAGAGAGATTGAAAC+TGG + tig0027594:21542-21561 Msa1434860:CDS 40.0%
!! TTCTACTTTGAAGCTGGACA+AGG + tig0027594:21609-21628 Msa1434860:CDS 40.0%
!! TCTACTTTGAAGCTGGACAA+GGG + tig0027594:21610-21629 Msa1434860:CDS 40.0%
! GCATATTGGCTACACATGTA+TGG - tig0027594:21850-21869 None:intergenic 40.0%
! GTTTTCAAAGAAGGCCATGT+AGG - tig0027594:20491-20510 None:intergenic 40.0%
!!! GACTGGTTTTGTAGTTCACT+TGG - tig0027594:20566-20585 None:intergenic 40.0%
TTGGGATCTTCCTTCTTATC+TGG + tig0027594:20674-20693 Msa1434860:CDS 40.0%
CAGTAGTAGCTAACAAGGTT+TGG - tig0027594:20712-20731 None:intergenic 40.0%
TTCCACCAAATCTAACACCA+GGG - tig0027594:20823-20842 None:intergenic 40.0%
TTTCCACCAAATCTAACACC+AGG - tig0027594:20824-20843 None:intergenic 40.0%
TGTAGATTACCAGGTGACTT+TGG + tig0027594:21108-21127 Msa1434860:intron 40.0%
CTGTACCATTTGAGAAATGC+TGG - tig0027594:21162-21181 None:intergenic 40.0%
AGAGAAGCTGAGCTTATTCA+TGG + tig0027594:21180-21199 Msa1434860:CDS 40.0%
AAGCTGAGCTTATTCATGGA+AGG + tig0027594:21184-21203 Msa1434860:CDS 40.0%
TGAGCTTATTCATGGAAGGT+GGG + tig0027594:21188-21207 Msa1434860:CDS 40.0%
AGAATGGAGCAATTGCATTG+GGG - tig0027594:21287-21306 None:intergenic 40.0%
GAGAATGGAGCAATTGCATT+GGG - tig0027594:21288-21307 None:intergenic 40.0%
!! AGAAGAGTACCAAAGGAGAA+TGG - tig0027594:21303-21322 None:intergenic 40.0%
TTCTCCTTTGGTACTCTTCT+AGG + tig0027594:21303-21322 Msa1434860:CDS 40.0%
ATTCGATTGACTGTGAATCC+GGG - tig0027594:21386-21405 None:intergenic 40.0%
CATTCGATTGACTGTGAATC+CGG - tig0027594:21387-21406 None:intergenic 40.0%
GGATTCACAGTCAATCGAAT+GGG + tig0027594:21386-21405 Msa1434860:CDS 40.0%
GGTTGCATTAGCAAAGTTCT+CGG - tig0027594:21433-21452 None:intergenic 40.0%
GAGAACTTTGCTAATGCAAC+CGG + tig0027594:21432-21451 Msa1434860:CDS 40.0%
GAAGCTAGAGAGATTGAAAC+TGG + tig0027594:21542-21561 Msa1434860:CDS 40.0%
!! TTCTACTTTGAAGCTGGACA+AGG + tig0027594:21609-21628 Msa1434860:CDS 40.0%
!! TCTACTTTGAAGCTGGACAA+GGG + tig0027594:21610-21629 Msa1434860:CDS 40.0%
! GCATATTGGCTACACATGTA+TGG - tig0027594:21850-21869 None:intergenic 40.0%
! ATAGAAAGAGCACAGTGGAG+TGG + tig0027594:20351-20370 Msa1434860:five_prime_UTR 45.0%
GTTGGAAGCCAAATCAGCTT+AGG + tig0027594:20391-20410 Msa1434860:five_prime_UTR 45.0%
GAAGCCAAATCAGCTTAGGA+TGG + tig0027594:20395-20414 Msa1434860:five_prime_UTR 45.0%
! CCTGAAGGGGTTTTCAAAGA+AGG - tig0027594:20500-20519 None:intergenic 45.0%
! CCTTCTTTGAAAACCCCTTC+AGG + tig0027594:20497-20516 Msa1434860:five_prime_UTR 45.0%
TGTGTGAGAGAGAACCTGAA+GGG - tig0027594:20514-20533 None:intergenic 45.0%
!! ACATCTGGTGCTGTGTTGAA+TGG + tig0027594:20650-20669 Msa1434860:CDS 45.0%
!! TGGTGCTGTGTTGAATGGTT+TGG + tig0027594:20655-20674 Msa1434860:CDS 45.0%
! GGTGCTGTGTTGAATGGTTT+GGG + tig0027594:20656-20675 Msa1434860:CDS 45.0%
GGATCTTCCTTCTTATCTGG+AGG + tig0027594:20677-20696 Msa1434860:CDS 45.0%
CCTCTTACCTCCAGATAAGA+AGG - tig0027594:20687-20706 None:intergenic 45.0%
CCTTCTTATCTGGAGGTAAG+AGG + tig0027594:20684-20703 Msa1434860:CDS 45.0%
ACTACTGCTATTGGAGCCAA+AGG + tig0027594:20725-20744 Msa1434860:CDS 45.0%
CTTCTGCACCAAAGAAGTCA+TGG + tig0027594:20795-20814 Msa1434860:CDS 45.0%
! TGGATCCCTGGTGTTAGATT+TGG + tig0027594:20815-20834 Msa1434860:CDS 45.0%
! ATCCCTGGTGTTAGATTTGG+TGG + tig0027594:20818-20837 Msa1434860:CDS 45.0%
!!! GACTTTGGTTTTGACCCACT+AGG + tig0027594:21123-21142 Msa1434860:CDS 45.0%
AGGACCCAGCATTTCTCAAA+TGG + tig0027594:21154-21173 Msa1434860:CDS 45.0%
CTGAGCTTATTCATGGAAGG+TGG + tig0027594:21187-21206 Msa1434860:CDS 45.0%
TATTCATGGAAGGTGGGCAA+TGG + tig0027594:21194-21213 Msa1434860:CDS 45.0%
!! GCAGTTCTAGGCATCTTTGT+TGG + tig0027594:21219-21238 Msa1434860:CDS 45.0%
TCTAGGCATCTTTGTTGGTC+AGG + tig0027594:21224-21243 Msa1434860:CDS 45.0%
GGAGAATGGAGCAATTGCAT+TGG - tig0027594:21289-21308 None:intergenic 45.0%
GCAATTGCTCCATTCTCCTT+TGG + tig0027594:21291-21310 Msa1434860:CDS 45.0%
!! AGTGCCTAGAAGAGTACCAA+AGG - tig0027594:21310-21329 None:intergenic 45.0%
! AGGCACTCAGTTGATTCTCA+TGG + tig0027594:21323-21342 Msa1434860:CDS 45.0%
! GGCACTCAGTTGATTCTCAT+GGG + tig0027594:21324-21343 Msa1434860:CDS 45.0%
! GCACTCAGTTGATTCTCATG+GGG + tig0027594:21325-21344 Msa1434860:CDS 45.0%
! TCAGTTGATTCTCATGGGGT+GGG + tig0027594:21329-21348 Msa1434860:CDS 45.0%
! ATGGGTCGATTTCTTCAACC+CGG + tig0027594:21365-21384 Msa1434860:CDS 45.0%
CGGATTCACAGTCAATCGAA+TGG + tig0027594:21385-21404 Msa1434860:CDS 45.0%
TGCATTAGCAAAGTTCTCGG+CGG - tig0027594:21430-21449 None:intergenic 45.0%
! GTTTTCGATGGTACCAGCAA+GGG - tig0027594:21499-21518 None:intergenic 45.0%
CTTGCTGGTACCATCGAAAA+CGG + tig0027594:21498-21517 Msa1434860:CDS 45.0%
! CTCTCTAGCTTCTCTGTATC+TGG - tig0027594:21534-21553 None:intergenic 45.0%
TGGCTGAGATTAAGCATGCT+AGG + tig0027594:21562-21581 Msa1434860:CDS 45.0%
!! TTACAAGCCAAGAGCACCAA+GGG - tig0027594:21643-21662 None:intergenic 45.0%
!! TTTACAAGCCAAGAGCACCA+AGG - tig0027594:21644-21663 None:intergenic 45.0%
TGTCATGGAGTAGCACACTT+AGG - tig0027594:21728-21747 None:intergenic 45.0%
! ATAGAAAGAGCACAGTGGAG+TGG + tig0027594:20351-20370 Msa1434860:five_prime_UTR 45.0%
GTTGGAAGCCAAATCAGCTT+AGG + tig0027594:20391-20410 Msa1434860:five_prime_UTR 45.0%
GAAGCCAAATCAGCTTAGGA+TGG + tig0027594:20395-20414 Msa1434860:five_prime_UTR 45.0%
! CCTGAAGGGGTTTTCAAAGA+AGG - tig0027594:20500-20519 None:intergenic 45.0%
! CCTTCTTTGAAAACCCCTTC+AGG + tig0027594:20497-20516 Msa1434860:five_prime_UTR 45.0%
TGTGTGAGAGAGAACCTGAA+GGG - tig0027594:20514-20533 None:intergenic 45.0%
!! ACATCTGGTGCTGTGTTGAA+TGG + tig0027594:20650-20669 Msa1434860:CDS 45.0%
!! TGGTGCTGTGTTGAATGGTT+TGG + tig0027594:20655-20674 Msa1434860:CDS 45.0%
! GGTGCTGTGTTGAATGGTTT+GGG + tig0027594:20656-20675 Msa1434860:CDS 45.0%
GGATCTTCCTTCTTATCTGG+AGG + tig0027594:20677-20696 Msa1434860:CDS 45.0%
CCTCTTACCTCCAGATAAGA+AGG - tig0027594:20687-20706 None:intergenic 45.0%
CCTTCTTATCTGGAGGTAAG+AGG + tig0027594:20684-20703 Msa1434860:CDS 45.0%
ACTACTGCTATTGGAGCCAA+AGG + tig0027594:20725-20744 Msa1434860:CDS 45.0%
CTTCTGCACCAAAGAAGTCA+TGG + tig0027594:20795-20814 Msa1434860:CDS 45.0%
! TGGATCCCTGGTGTTAGATT+TGG + tig0027594:20815-20834 Msa1434860:CDS 45.0%
! ATCCCTGGTGTTAGATTTGG+TGG + tig0027594:20818-20837 Msa1434860:CDS 45.0%
!!! GACTTTGGTTTTGACCCACT+AGG + tig0027594:21123-21142 Msa1434860:CDS 45.0%
AGGACCCAGCATTTCTCAAA+TGG + tig0027594:21154-21173 Msa1434860:CDS 45.0%
CTGAGCTTATTCATGGAAGG+TGG + tig0027594:21187-21206 Msa1434860:CDS 45.0%
TATTCATGGAAGGTGGGCAA+TGG + tig0027594:21194-21213 Msa1434860:CDS 45.0%
!! GCAGTTCTAGGCATCTTTGT+TGG + tig0027594:21219-21238 Msa1434860:CDS 45.0%
TCTAGGCATCTTTGTTGGTC+AGG + tig0027594:21224-21243 Msa1434860:CDS 45.0%
GGAGAATGGAGCAATTGCAT+TGG - tig0027594:21289-21308 None:intergenic 45.0%
GCAATTGCTCCATTCTCCTT+TGG + tig0027594:21291-21310 Msa1434860:CDS 45.0%
!! AGTGCCTAGAAGAGTACCAA+AGG - tig0027594:21310-21329 None:intergenic 45.0%
! AGGCACTCAGTTGATTCTCA+TGG + tig0027594:21323-21342 Msa1434860:CDS 45.0%
! GGCACTCAGTTGATTCTCAT+GGG + tig0027594:21324-21343 Msa1434860:CDS 45.0%
! GCACTCAGTTGATTCTCATG+GGG + tig0027594:21325-21344 Msa1434860:CDS 45.0%
! TCAGTTGATTCTCATGGGGT+GGG + tig0027594:21329-21348 Msa1434860:CDS 45.0%
! ATGGGTCGATTTCTTCAACC+CGG + tig0027594:21365-21384 Msa1434860:CDS 45.0%
CGGATTCACAGTCAATCGAA+TGG + tig0027594:21385-21404 Msa1434860:CDS 45.0%
TGCATTAGCAAAGTTCTCGG+CGG - tig0027594:21430-21449 None:intergenic 45.0%
! GTTTTCGATGGTACCAGCAA+GGG - tig0027594:21499-21518 None:intergenic 45.0%
CTTGCTGGTACCATCGAAAA+CGG + tig0027594:21498-21517 Msa1434860:CDS 45.0%
! CTCTCTAGCTTCTCTGTATC+TGG - tig0027594:21534-21553 None:intergenic 45.0%
TGGCTGAGATTAAGCATGCT+AGG + tig0027594:21562-21581 Msa1434860:CDS 45.0%
!! TTACAAGCCAAGAGCACCAA+GGG - tig0027594:21643-21662 None:intergenic 45.0%
!! TTTACAAGCCAAGAGCACCA+AGG - tig0027594:21644-21663 None:intergenic 45.0%
TGTCATGGAGTAGCACACTT+AGG - tig0027594:21728-21747 None:intergenic 45.0%
! TGATTTGGCTTCCAACCACG+TGG - tig0027594:20387-20406 None:intergenic 50.0%
GTGTGAGAGAGAACCTGAAG+GGG - tig0027594:20513-20532 None:intergenic 50.0%
GTGTGTGAGAGAGAACCTGA+AGG - tig0027594:20515-20534 None:intergenic 50.0%
CAAATGGCAGCTGCAACATC+TGG + tig0027594:20635-20654 Msa1434860:exon 50.0%
ACTGCTATTGGAGCCAAAGG+TGG + tig0027594:20728-20747 Msa1434860:CDS 50.0%
CCAGGGATCCATGACTTCTT+TGG - tig0027594:20806-20825 None:intergenic 50.0%
CCAAAGAAGTCATGGATCCC+TGG + tig0027594:20803-20822 Msa1434860:CDS 50.0%
ACGATCCATCGAGCCATTCT+GGG - tig0027594:20856-20875 None:intergenic 50.0%
TACGATCCATCGAGCCATTC+TGG - tig0027594:20857-20876 None:intergenic 50.0%
GGGTCAAAACCAAAGTCACC+TGG - tig0027594:21120-21139 None:intergenic 50.0%
GCATCTTTGTTGGTCAGGCA+TGG + tig0027594:21229-21248 Msa1434860:CDS 50.0%
TTTGTTGGTCAGGCATGGAG+TGG + tig0027594:21234-21253 Msa1434860:CDS 50.0%
GAGTGGAGTTCCATGGTTTG+AGG + tig0027594:21251-21270 Msa1434860:CDS 50.0%
! CTCAGTTGATTCTCATGGGG+TGG + tig0027594:21328-21347 Msa1434860:CDS 50.0%
GTGGGTAGAGAGCAAGAGAT+GGG + tig0027594:21347-21366 Msa1434860:CDS 50.0%
! TTCTCGGCGGTTTTTGACCA+TGG - tig0027594:21417-21436 None:intergenic 50.0%
GCTAATGCAACCGGAGAACA+AGG + tig0027594:21441-21460 Msa1434860:CDS 50.0%
! GGTCGAAGAATTTTCCCCCT+GGG - tig0027594:21470-21489 None:intergenic 50.0%
TGGTACCAGCAAGGGACAAT+GGG - tig0027594:21491-21510 None:intergenic 50.0%
ATGGTACCAGCAAGGGACAA+TGG - tig0027594:21492-21511 None:intergenic 50.0%
! CGTTTTCGATGGTACCAGCA+AGG - tig0027594:21500-21519 None:intergenic 50.0%
!! GCATGCTAGGCTTGCTATGT+TGG + tig0027594:21575-21594 Msa1434860:CDS 50.0%
!! TACAAGCCAAGAGCACCAAG+GGG - tig0027594:21642-21661 None:intergenic 50.0%
! TGATTTGGCTTCCAACCACG+TGG - tig0027594:20387-20406 None:intergenic 50.0%
GTGTGAGAGAGAACCTGAAG+GGG - tig0027594:20513-20532 None:intergenic 50.0%
GTGTGTGAGAGAGAACCTGA+AGG - tig0027594:20515-20534 None:intergenic 50.0%
CAAATGGCAGCTGCAACATC+TGG + tig0027594:20635-20654 Msa1434860:exon 50.0%
ACTGCTATTGGAGCCAAAGG+TGG + tig0027594:20728-20747 Msa1434860:CDS 50.0%
CCAGGGATCCATGACTTCTT+TGG - tig0027594:20806-20825 None:intergenic 50.0%
CCAAAGAAGTCATGGATCCC+TGG + tig0027594:20803-20822 Msa1434860:CDS 50.0%
ACGATCCATCGAGCCATTCT+GGG - tig0027594:20856-20875 None:intergenic 50.0%
TACGATCCATCGAGCCATTC+TGG - tig0027594:20857-20876 None:intergenic 50.0%
GGGTCAAAACCAAAGTCACC+TGG - tig0027594:21120-21139 None:intergenic 50.0%
GCATCTTTGTTGGTCAGGCA+TGG + tig0027594:21229-21248 Msa1434860:CDS 50.0%
TTTGTTGGTCAGGCATGGAG+TGG + tig0027594:21234-21253 Msa1434860:CDS 50.0%
GAGTGGAGTTCCATGGTTTG+AGG + tig0027594:21251-21270 Msa1434860:CDS 50.0%
! CTCAGTTGATTCTCATGGGG+TGG + tig0027594:21328-21347 Msa1434860:CDS 50.0%
GTGGGTAGAGAGCAAGAGAT+GGG + tig0027594:21347-21366 Msa1434860:CDS 50.0%
! TTCTCGGCGGTTTTTGACCA+TGG - tig0027594:21417-21436 None:intergenic 50.0%
GCTAATGCAACCGGAGAACA+AGG + tig0027594:21441-21460 Msa1434860:CDS 50.0%
! GGTCGAAGAATTTTCCCCCT+GGG - tig0027594:21470-21489 None:intergenic 50.0%
TGGTACCAGCAAGGGACAAT+GGG - tig0027594:21491-21510 None:intergenic 50.0%
ATGGTACCAGCAAGGGACAA+TGG - tig0027594:21492-21511 None:intergenic 50.0%
! CGTTTTCGATGGTACCAGCA+AGG - tig0027594:21500-21519 None:intergenic 50.0%
!! GCATGCTAGGCTTGCTATGT+TGG + tig0027594:21575-21594 Msa1434860:CDS 50.0%
!! TACAAGCCAAGAGCACCAAG+GGG - tig0027594:21642-21661 None:intergenic 50.0%
GAGCACAGTGGAGTGGAACA+TGG + tig0027594:20358-20377 Msa1434860:five_prime_UTR 55.0%
AGTGGAACATGGTGTCCACG+TGG + tig0027594:20369-20388 Msa1434860:five_prime_UTR 55.0%
GAACATGGTGTCCACGTGGT+TGG + tig0027594:20373-20392 Msa1434860:five_prime_UTR 55.0%
ACCAGCTGCAACACCACCTT+TGG - tig0027594:20744-20763 None:intergenic 55.0%
GAAACCTCGTCGACCCAGAA+TGG + tig0027594:20840-20859 Msa1434860:CDS 55.0%
!! GGTTTTGACCCACTAGGCCT+TGG + tig0027594:21129-21148 Msa1434860:CDS 55.0%
GAAATGCTGGGTCCTTGCCA+AGG - tig0027594:21149-21168 None:intergenic 55.0%
TGGGCAATGGCTGCAGTTCT+AGG + tig0027594:21207-21226 Msa1434860:CDS 55.0%
AGGCATGGAGTGGAGTTCCA+TGG + tig0027594:21244-21263 Msa1434860:CDS 55.0%
! GGAGTTCCATGGTTTGAGGC+TGG + tig0027594:21255-21274 Msa1434860:CDS 55.0%
TCAGCTCCAGCCTCAAACCA+TGG - tig0027594:21264-21283 None:intergenic 55.0%
GGTGGGTAGAGAGCAAGAGA+TGG + tig0027594:21346-21365 Msa1434860:CDS 55.0%
CAATCGAATGGGCCACTCCA+TGG + tig0027594:21397-21416 Msa1434860:CDS 55.0%
! GGCGGTTTTTGACCATGGAG+TGG - tig0027594:21412-21431 None:intergenic 55.0%
! GGGTCGAAGAATTTTCCCCC+TGG - tig0027594:21471-21490 None:intergenic 55.0%
TTCGACCCATTGTCCCTTGC+TGG + tig0027594:21483-21502 Msa1434860:CDS 55.0%
!! AAGACTCCCCTTGGTGCTCT+TGG + tig0027594:21633-21652 Msa1434860:CDS 55.0%
GAGCACAGTGGAGTGGAACA+TGG + tig0027594:20358-20377 Msa1434860:five_prime_UTR 55.0%
AGTGGAACATGGTGTCCACG+TGG + tig0027594:20369-20388 Msa1434860:five_prime_UTR 55.0%
GAACATGGTGTCCACGTGGT+TGG + tig0027594:20373-20392 Msa1434860:five_prime_UTR 55.0%
ACCAGCTGCAACACCACCTT+TGG - tig0027594:20744-20763 None:intergenic 55.0%
GAAACCTCGTCGACCCAGAA+TGG + tig0027594:20840-20859 Msa1434860:CDS 55.0%
!! GGTTTTGACCCACTAGGCCT+TGG + tig0027594:21129-21148 Msa1434860:CDS 55.0%
GAAATGCTGGGTCCTTGCCA+AGG - tig0027594:21149-21168 None:intergenic 55.0%
TGGGCAATGGCTGCAGTTCT+AGG + tig0027594:21207-21226 Msa1434860:CDS 55.0%
AGGCATGGAGTGGAGTTCCA+TGG + tig0027594:21244-21263 Msa1434860:CDS 55.0%
! GGAGTTCCATGGTTTGAGGC+TGG + tig0027594:21255-21274 Msa1434860:CDS 55.0%
TCAGCTCCAGCCTCAAACCA+TGG - tig0027594:21264-21283 None:intergenic 55.0%
GGTGGGTAGAGAGCAAGAGA+TGG + tig0027594:21346-21365 Msa1434860:CDS 55.0%
CAATCGAATGGGCCACTCCA+TGG + tig0027594:21397-21416 Msa1434860:CDS 55.0%
! GGCGGTTTTTGACCATGGAG+TGG - tig0027594:21412-21431 None:intergenic 55.0%
! GGGTCGAAGAATTTTCCCCC+TGG - tig0027594:21471-21490 None:intergenic 55.0%
TTCGACCCATTGTCCCTTGC+TGG + tig0027594:21483-21502 Msa1434860:CDS 55.0%
!! AAGACTCCCCTTGGTGCTCT+TGG + tig0027594:21633-21652 Msa1434860:CDS 55.0%
!! GCCAAAGGTGGTGTTGCAGC+TGG + tig0027594:20740-20759 Msa1434860:CDS 60.0%
GTCGACCCAGAATGGCTCGA+TGG + tig0027594:20848-20867 Msa1434860:CDS 60.0%
TGACCCACTAGGCCTTGGCA+AGG + tig0027594:21134-21153 Msa1434860:CDS 60.0%
GGTCCTTGCCAAGGCCTAGT+GGG - tig0027594:21140-21159 None:intergenic 60.0%
ACCGGAGAACAAGGCTACCC+AGG + tig0027594:21450-21469 Msa1434860:CDS 60.0%
!! CCCTGGGTAGCCTTGTTCTC+CGG - tig0027594:21454-21473 None:intergenic 60.0%
CCGGAGAACAAGGCTACCCA+GGG + tig0027594:21451-21470 Msa1434860:CDS 60.0%
CGGAGAACAAGGCTACCCAG+GGG + tig0027594:21452-21471 Msa1434860:CDS 60.0%
GGAGAACAAGGCTACCCAGG+GGG + tig0027594:21453-21472 Msa1434860:CDS 60.0%
GGACAAGGGAAGACTCCCCT+TGG + tig0027594:21624-21643 Msa1434860:CDS 60.0%
!! GCCAAAGGTGGTGTTGCAGC+TGG + tig0027594:20740-20759 Msa1434860:CDS 60.0%
GTCGACCCAGAATGGCTCGA+TGG + tig0027594:20848-20867 Msa1434860:CDS 60.0%
TGACCCACTAGGCCTTGGCA+AGG + tig0027594:21134-21153 Msa1434860:CDS 60.0%
GGTCCTTGCCAAGGCCTAGT+GGG - tig0027594:21140-21159 None:intergenic 60.0%
ACCGGAGAACAAGGCTACCC+AGG + tig0027594:21450-21469 Msa1434860:CDS 60.0%
!! CCCTGGGTAGCCTTGTTCTC+CGG - tig0027594:21454-21473 None:intergenic 60.0%
CCGGAGAACAAGGCTACCCA+GGG + tig0027594:21451-21470 Msa1434860:CDS 60.0%
CGGAGAACAAGGCTACCCAG+GGG + tig0027594:21452-21471 Msa1434860:CDS 60.0%
GGAGAACAAGGCTACCCAGG+GGG + tig0027594:21453-21472 Msa1434860:CDS 60.0%
GGACAAGGGAAGACTCCCCT+TGG + tig0027594:21624-21643 Msa1434860:CDS 60.0%
CGAGCCATTCTGGGTCGACG+AGG - tig0027594:20847-20866 None:intergenic 65.0%
GGGTCCTTGCCAAGGCCTAG+TGG - tig0027594:21141-21160 None:intergenic 65.0%
CGAGCCATTCTGGGTCGACG+AGG - tig0027594:20847-20866 None:intergenic 65.0%
GGGTCCTTGCCAAGGCCTAG+TGG - tig0027594:21141-21160 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0027594 gene 20334 21968 20334 ID=Msa1434860;Name=Msa1434860
tig0027594 mRNA 20334 21968 20334 ID=Msa1434860-mRNA-1;Parent=Msa1434860;Name=Msa1434860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=304|1|1|1|1|1|2|306|261
tig0027594 exon 20334 20873 20334 ID=Msa1434860-mRNA-1:exon:9369;Parent=Msa1434860-mRNA-1
tig0027594 exon 21113 21968 21113 ID=Msa1434860-mRNA-1:exon:9370;Parent=Msa1434860-mRNA-1
tig0027594 five_prime_UTR 20334 20637 20334 ID=Msa1434860-mRNA-1:five_prime_utr;Parent=Msa1434860-mRNA-1
tig0027594 CDS 20638 20873 20638 ID=Msa1434860-mRNA-1:cds;Parent=Msa1434860-mRNA-1
tig0027594 CDS 21113 21662 21113 ID=Msa1434860-mRNA-1:cds;Parent=Msa1434860-mRNA-1
tig0027594 three_prime_UTR 21663 21968 21663 ID=Msa1434860-mRNA-1:three_prime_utr;Parent=Msa1434860-mRNA-1
Gene Sequence

>Msa1434860

ATGGCAGCTGCAACATCTGGTGCTGTGTTGAATGGTTTGGGATCTTCCTTCTTATCTGGAGGTAAGAGGAGCCAAACCTTGTTAGCTACTACTGCTATTGGAGCCAAAGGTGGTGTTGCAGCTGGTAGTCCTAAAAGACTTATTGTTGCTGCTGCTGCTTCTGCACCAAAGAAGTCATGGATCCCTGGTGTTAGATTTGGTGGAAACCTCGTCGACCCAGAATGGCTCGATGGATCATTACCAGGTGACTTTGGTTTTGACCCACTAGGCCTTGGCAAGGACCCAGCATTTCTCAAATGGTACAGAGAAGCTGAGCTTATTCATGGAAGGTGGGCAATGGCTGCAGTTCTAGGCATCTTTGTTGGTCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCATTCTCCTTTGGTACTCTTCTAGGCACTCAGTTGATTCTCATGGGGTGGGTAGAGAGCAAGAGATGGGTCGATTTCTTCAACCCGGATTCACAGTCAATCGAATGGGCCACTCCATGGTCAAAAACCGCCGAGAACTTTGCTAATGCAACCGGAGAACAAGGCTACCCAGGGGGAAAATTCTTCGACCCATTGTCCCTTGCTGGTACCATCGAAAACGGAGTTTACATTCCAGATACAGAGAAGCTAGAGAGATTGAAACTGGCTGAGATTAAGCATGCTAGGCTTGCTATGTTGGCTATGCTGATTTTCTACTTTGAAGCTGGACAAGGGAAGACTCCCCTTGGTGCTCTTGGCTTGTAA

Protein sequence

>Msa1434860

MAAATSGAVLNGLGSSFLSGGKRSQTLLATTAIGAKGGVAAGSPKRLIVAAAASAPKKSWIPGVRFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSIEWATPWSKTAENFANATGEQGYPGGKFFDPLSLAGTIENGVYIPDTEKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL*