AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0310270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0310270 MtrunA17_Chr2g0279001 99.617 261 1 0 1 261 1 261 0.0 514
Msa0310270 MtrunA17_Chr3g0133901 42.523 214 96 6 42 249 43 235 4.02e-41 142
Msa0310270 MtrunA17_Chr2g0301081 45.745 188 69 5 73 249 72 237 2.34e-40 140
Msa0310270 MtrunA17_Chr8g0345631 38.835 206 97 5 49 248 55 237 1.39e-35 127
Msa0310270 MtrunA17_Chr3g0092091 36.471 255 117 9 12 259 17 233 1.67e-32 119
Msa0310270 MtrunA17_Chr3g0113311 32.800 250 78 7 60 257 60 271 2.43e-29 112
Msa0310270 MtrunA17_Chr4g0006181 33.591 259 82 7 51 257 106 326 2.59e-29 113
Msa0310270 MtrunA17_Chr5g0448421 35.567 194 91 8 75 249 69 247 4.07e-25 100
Msa0310270 MtrunA17_Chr5g0448411 35.567 194 91 8 75 249 67 245 1.49e-24 99.0
Msa0310270 MtrunA17_Chr6g0462031 33.673 196 80 6 59 243 48 204 2.79e-21 89.7
Msa0310270 MtrunA17_Chr2g0318521 34.615 208 86 7 73 259 63 241 6.14e-21 89.0
Msa0310270 MtrunA17_Chr4g0051941 33.816 207 87 8 73 259 67 243 4.86e-18 81.3
Msa0310270 MtrunA17_Chr5g0447531 32.850 207 89 7 73 259 66 242 1.26e-17 80.1
Msa0310270 MtrunA17_Chr6g0453181 33.333 207 88 8 73 259 66 242 1.28e-17 80.1
Msa0310270 MtrunA17_Chr6g0453151 32.850 207 89 8 73 259 133 309 3.18e-17 79.7
Msa0310270 MtrunA17_Chr6g0453141 31.884 207 91 7 73 259 66 242 4.93e-17 78.6
Msa0310270 MtrunA17_Chr1g0157481 32.035 231 115 7 50 256 96 308 5.29e-17 79.3
Msa0310270 MtrunA17_Chr6g0453161 32.850 207 89 8 73 259 68 244 8.22e-17 79.7
Msa0310270 MtrunA17_Chr6g0453161 33.333 207 88 8 73 259 333 509 9.20e-17 79.3
Msa0310270 MtrunA17_Chr6g0476641 32.569 218 122 8 40 249 52 252 4.45e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0310270 AT1G15820.1 82.375 261 43 1 1 261 1 258 2.94e-152 425
Msa0310270 AT1G45474.2 40.566 212 100 6 49 254 38 229 1.28e-37 133
Msa0310270 AT1G45474.1 40.566 212 100 6 49 254 38 229 1.28e-37 133
Msa0310270 AT1G19150.1 43.716 183 80 4 73 249 75 240 2.55e-37 132
Msa0310270 AT3G61470.1 38.140 215 104 5 40 248 35 226 1.34e-35 128
Msa0310270 AT3G47470.1 34.263 251 119 9 17 259 22 234 1.32e-29 112
Msa0310270 AT5G01530.1 34.538 249 73 8 60 256 58 268 5.26e-29 111
Msa0310270 AT3G08940.2 32.721 272 90 9 38 257 36 266 2.25e-28 109
Msa0310270 AT3G54890.1 36.916 214 83 7 59 259 47 221 4.82e-26 102
Msa0310270 AT1G61520.3 33.766 231 117 9 39 248 27 242 2.53e-25 101
Msa0310270 AT1G61520.1 33.766 231 117 9 39 248 27 242 2.53e-25 101
Msa0310270 AT3G54890.4 35.979 189 71 6 59 236 47 196 1.36e-22 92.8
Msa0310270 AT5G54270.1 33.333 246 103 9 39 259 33 242 6.39e-22 92.0
Msa0310270 AT1G61520.2 34.392 189 90 8 79 248 14 187 1.13e-21 90.5
Msa0310270 AT2G34430.1 34.783 207 86 9 73 259 66 243 4.48e-18 81.6
Msa0310270 AT1G29920.1 34.300 207 87 9 73 259 67 244 4.69e-18 81.6
Msa0310270 AT1G29910.1 34.300 207 87 9 73 259 67 244 4.69e-18 81.6
Msa0310270 AT2G34420.1 34.783 207 86 9 73 259 65 242 4.69e-18 81.6
Msa0310270 AT1G29930.1 34.300 207 87 9 73 259 67 244 5.79e-18 81.3
Msa0310270 AT3G27690.1 30.385 260 123 10 26 259 16 243 6.25e-18 81.3
Msa0310270 AT3G27690.2 30.385 260 123 10 26 259 48 275 7.07e-18 81.6
Msa0310270 AT2G05100.1 32.850 207 89 8 73 259 66 242 2.90e-17 79.3
Msa0310270 AT2G05070.1 32.850 207 89 8 73 259 66 242 3.27e-17 79.3
Msa0310270 AT3G54890.3 54.667 75 28 1 59 133 47 115 7.62e-17 76.3
Msa0310270 AT2G05100.2 32.653 196 83 7 73 249 66 231 1.27e-16 78.6
Msa0310270 AT3G54890.2 54.667 75 28 1 59 133 47 115 2.02e-16 75.9
Msa0310270 AT4G10340.1 31.383 188 92 6 73 249 82 243 6.31e-15 73.2

Find 125 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATATCGTGGATAGATTT+TGG 0.159030 2_4:-5108152 None:intergenic
TTCTCCTTTGGTACTCTTCT+AGG 0.198477 2_4:+5109018 Msa0310270:CDS
GTTCTTTGTGACTTTGAAAA+AGG 0.201787 2_4:-5109668 None:intergenic
TTGGGATCTTCCTTCTTATC+TGG 0.220925 2_4:+5108389 Msa0310270:CDS
TACGATCCATCGAGCCATTC+TGG 0.222067 2_4:-5108569 None:intergenic
AAACAAATGTAAAGATAAAT+TGG 0.228865 2_4:+5109621 Msa0310270:three_prime_UTR
CTCTCTAGCTTCTCTGTATC+TGG 0.252195 2_4:-5109246 None:intergenic
TTCGACCCATTGTCCCTTGC+TGG 0.300502 2_4:+5109198 Msa0310270:CDS
CCTTCTTTGAAAACCCCTTC+AGG 0.303401 2_4:+5108212 Msa0310270:five_prime_UTR
CATTCGATTGACTGTGAATC+CGG 0.308951 2_4:-5109099 None:intergenic
ATTTCCATCCTAAGCTGATT+TGG 0.310470 2_4:-5108114 None:intergenic
CCAGGGATCCATGACTTCTT+TGG 0.326294 2_4:-5108518 None:intergenic
TGGGCAATGGCTGCAGTTCT+AGG 0.329531 2_4:+5108922 Msa0310270:CDS
GTTAGACTTTGTATGCATAT+TGG 0.335078 2_4:-5109576 None:intergenic
GATGGAAATCCATTTCCTAT+TGG 0.344286 2_4:+5108128 Msa0310270:five_prime_UTR
AAGACTCCCCTTGGTGCTCT+TGG 0.346873 2_4:+5109348 Msa0310270:CDS
TTGTTAGCTACTACTGCTAT+TGG 0.371726 2_4:+5108431 Msa0310270:CDS
TCTAGGCATCTTTGTTGGTC+AGG 0.375207 2_4:+5108939 Msa0310270:CDS
GCAATTGCTCCATTCTCCTT+TGG 0.375390 2_4:+5109006 Msa0310270:CDS
GGTGCTGTGTTGAATGGTTT+GGG 0.386787 2_4:+5108371 Msa0310270:CDS
AGAGAAGCTGAGCTTATTCA+TGG 0.388496 2_4:+5108895 Msa0310270:CDS
TATGGATCAAACAGATATAT+AGG 0.394006 2_4:-5109544 None:intergenic
CTGTACCATTTGAGAAATGC+TGG 0.410852 2_4:-5108874 None:intergenic
TGGTGCTGTGTTGAATGGTT+TGG 0.411606 2_4:+5108370 Msa0310270:CDS
TGGATCCCTGGTGTTAGATT+TGG 0.414159 2_4:+5108530 Msa0310270:CDS
CCCTGGGTAGCCTTGTTCTC+CGG 0.423395 2_4:-5109166 None:intergenic
TTTAATTCATGTTCTAATGT+TGG 0.424794 2_4:+5109465 Msa0310270:three_prime_UTR
GAGAATGGAGCAATTGCATT+GGG 0.424903 2_4:-5109000 None:intergenic
CCTTCTTATCTGGAGGTAAG+AGG 0.427547 2_4:+5108399 Msa0310270:CDS
ACCAGCTGCAACACCACCTT+TGG 0.430059 2_4:-5108456 None:intergenic
ACGATCCATCGAGCCATTCT+GGG 0.431920 2_4:-5108568 None:intergenic
AGGCACTCAGTTGATTCTCA+TGG 0.436916 2_4:+5109038 Msa0310270:CDS
AATCTAAACAAGAAATCTTA+AGG 0.438847 2_4:-5108173 None:intergenic
GAAGCTAGAGAGATTGAAAC+TGG 0.439049 2_4:+5109257 Msa0310270:CDS
TGTAGATTACCAGGTGACTT+TGG 0.442105 2_4:+5108823 Msa0310270:intron
CTCAGTTGATTCTCATGGGG+TGG 0.444041 2_4:+5109043 Msa0310270:CDS
CAAATGGCAGCTGCAACATC+TGG 0.450920 2_4:+5108350 Msa0310270:exon
GCAGTTCTAGGCATCTTTGT+TGG 0.454175 2_4:+5108934 Msa0310270:CDS
GCATGCTAGGCTTGCTATGT+TGG 0.454270 2_4:+5109290 Msa0310270:CDS
GGCACTCAGTTGATTCTCAT+GGG 0.454921 2_4:+5109039 Msa0310270:CDS
GCATATTGGCTACACATGTA+TGG 0.459520 2_4:-5109562 None:intergenic
GGAGTTCCATGGTTTGAGGC+TGG 0.459578 2_4:+5108970 Msa0310270:CDS
CAGTAGTAGCTAACAAGGTT+TGG 0.464458 2_4:-5108424 None:intergenic
GCATCTTTGTTGGTCAGGCA+TGG 0.465448 2_4:+5108944 Msa0310270:CDS
ACATCTGGTGCTGTGTTGAA+TGG 0.470993 2_4:+5108365 Msa0310270:CDS
ATCCCTGGTGTTAGATTTGG+TGG 0.473436 2_4:+5108533 Msa0310270:CDS
TTAGATTTCATTGTCCTACA+TGG 0.477009 2_4:+5108189 Msa0310270:five_prime_UTR
GAGAACTTTGCTAATGCAAC+CGG 0.479444 2_4:+5109147 Msa0310270:CDS
GGTTGCATTAGCAAAGTTCT+CGG 0.480106 2_4:-5109145 None:intergenic
GGTCCTTGCCAAGGCCTAGT+GGG 0.484093 2_4:-5108852 None:intergenic
AGTGTAAAAGATAAGACAAA+TGG 0.491353 2_4:+5108334 Msa0310270:exon
GGGTCCTTGCCAAGGCCTAG+TGG 0.496533 2_4:-5108853 None:intergenic
AACATGAATTAAATTTGTCA+TGG 0.501644 2_4:-5109455 None:intergenic
CCGGAGAACAAGGCTACCCA+GGG 0.503852 2_4:+5109166 Msa0310270:CDS
AGGACCCAGCATTTCTCAAA+TGG 0.509475 2_4:+5108869 Msa0310270:CDS
CTTGCTGGTACCATCGAAAA+CGG 0.510039 2_4:+5109213 Msa0310270:CDS
AGAAGAGTACCAAAGGAGAA+TGG 0.511148 2_4:-5109015 None:intergenic
CCTCTTACCTCCAGATAAGA+AGG 0.513918 2_4:-5108399 None:intergenic
AGGCATGGAGTGGAGTTCCA+TGG 0.514110 2_4:+5108959 Msa0310270:CDS
TTCTACTTTGAAGCTGGACA+AGG 0.520216 2_4:+5109324 Msa0310270:CDS
ACCGGAGAACAAGGCTACCC+AGG 0.521424 2_4:+5109165 Msa0310270:CDS
GTTGGAAGCCAAATCAGCTT+AGG 0.521590 2_4:+5108106 Msa0310270:five_prime_UTR
TTTGTTGGTCAGGCATGGAG+TGG 0.524108 2_4:+5108949 Msa0310270:CDS
CCAAAGAAGTCATGGATCCC+TGG 0.525917 2_4:+5108518 Msa0310270:CDS
TGGCTGAGATTAAGCATGCT+AGG 0.527131 2_4:+5109277 Msa0310270:CDS
ATTCGATTGACTGTGAATCC+GGG 0.527520 2_4:-5109098 None:intergenic
TGGTACCAGCAAGGGACAAT+GGG 0.528256 2_4:-5109203 None:intergenic
TGTCATGGAGTAGCACACTT+AGG 0.529326 2_4:-5109440 None:intergenic
GCCAAAGGTGGTGTTGCAGC+TGG 0.535237 2_4:+5108455 Msa0310270:CDS
GGATTCACAGTCAATCGAAT+GGG 0.537483 2_4:+5109101 Msa0310270:CDS
GGATCTTCCTTCTTATCTGG+AGG 0.538000 2_4:+5108392 Msa0310270:CDS
CTTCTGCACCAAAGAAGTCA+TGG 0.541838 2_4:+5108510 Msa0310270:CDS
TACCTTCTTGCTTATGACAA+AGG 0.544227 2_4:-5109598 None:intergenic
GGAGAATGGAGCAATTGCAT+TGG 0.544242 2_4:-5109001 None:intergenic
CTGAGCTTATTCATGGAAGG+TGG 0.544781 2_4:+5108902 Msa0310270:CDS
TCAGTTGATTCTCATGGGGT+GGG 0.544833 2_4:+5109044 Msa0310270:CDS
AGTAATAGTCTAATAGAGAC+TGG 0.547120 2_4:-5108295 None:intergenic
GAAACCTCGTCGACCCAGAA+TGG 0.547423 2_4:+5108555 Msa0310270:CDS
GAGTGGAGTTCCATGGTTTG+AGG 0.550527 2_4:+5108966 Msa0310270:CDS
TCAGCTCCAGCCTCAAACCA+TGG 0.554373 2_4:-5108976 None:intergenic
ATGGTACCAGCAAGGGACAA+TGG 0.556874 2_4:-5109204 None:intergenic
AACCTTTGTCATAAGCAAGA+AGG 0.557195 2_4:+5109596 Msa0310270:three_prime_UTR
GGACAAGGGAAGACTCCCCT+TGG 0.557324 2_4:+5109339 Msa0310270:CDS
GTGGGTAGAGAGCAAGAGAT+GGG 0.560152 2_4:+5109062 Msa0310270:CDS
CGGATTCACAGTCAATCGAA+TGG 0.566881 2_4:+5109100 Msa0310270:CDS
GCTAATGCAACCGGAGAACA+AGG 0.571637 2_4:+5109156 Msa0310270:CDS
GAACATGGTGTCCACGTGGT+TGG 0.584310 2_4:+5108088 Msa0310270:five_prime_UTR
TTACAAGCCAAGAGCACCAA+GGG 0.584331 2_4:-5109355 None:intergenic
TATTCATGGAAGGTGGGCAA+TGG 0.584518 2_4:+5108909 Msa0310270:CDS
CAATCGAATGGGCCACTCCA+TGG 0.585992 2_4:+5109112 Msa0310270:CDS
GGTGGGTAGAGAGCAAGAGA+TGG 0.588337 2_4:+5109061 Msa0310270:CDS
TTTCCACCAAATCTAACACC+AGG 0.597681 2_4:-5108536 None:intergenic
AATAGCAGTAGTAGCTAACA+AGG 0.598050 2_4:-5108429 None:intergenic
GAAGCCAAATCAGCTTAGGA+TGG 0.598596 2_4:+5108110 Msa0310270:five_prime_UTR
AGAAATCTTAAGGTATATCG+TGG 0.599963 2_4:-5108163 None:intergenic
TGACCCACTAGGCCTTGGCA+AGG 0.602653 2_4:+5108849 Msa0310270:CDS
GAAATGCTGGGTCCTTGCCA+AGG 0.604301 2_4:-5108861 None:intergenic
TGAGCTTATTCATGGAAGGT+GGG 0.606190 2_4:+5108903 Msa0310270:CDS
ATAGAAAGAGCACAGTGGAG+TGG 0.606414 2_4:+5108066 Msa0310270:five_prime_UTR
AAGCTGAGCTTATTCATGGA+AGG 0.607522 2_4:+5108899 Msa0310270:CDS
AGTGCCTAGAAGAGTACCAA+AGG 0.608047 2_4:-5109022 None:intergenic
TGTACCATTTGAGAAATGCT+GGG 0.608952 2_4:-5108873 None:intergenic
GAGCACAGTGGAGTGGAACA+TGG 0.610835 2_4:+5108073 Msa0310270:five_prime_UTR
ATGGGTCGATTTCTTCAACC+CGG 0.612388 2_4:+5109080 Msa0310270:CDS
CAGATATATAGGTAAATGCA+AGG 0.612552 2_4:-5109533 None:intergenic
GTCGACCCAGAATGGCTCGA+TGG 0.628418 2_4:+5108563 Msa0310270:CDS
ACTACTGCTATTGGAGCCAA+AGG 0.636609 2_4:+5108440 Msa0310270:CDS
CGAGCCATTCTGGGTCGACG+AGG 0.636930 2_4:-5108559 None:intergenic
GCACTCAGTTGATTCTCATG+GGG 0.642271 2_4:+5109040 Msa0310270:CDS
GGGTCAAAACCAAAGTCACC+TGG 0.643002 2_4:-5108832 None:intergenic
ACTGCTATTGGAGCCAAAGG+TGG 0.648832 2_4:+5108443 Msa0310270:CDS
TTTACAAGCCAAGAGCACCA+AGG 0.650086 2_4:-5109356 None:intergenic
TCTACTTTGAAGCTGGACAA+GGG 0.657323 2_4:+5109325 Msa0310270:CDS
TGTGTGAGAGAGAACCTGAA+GGG 0.667684 2_4:-5108226 None:intergenic
AGAATGGAGCAATTGCATTG+GGG 0.695433 2_4:-5108999 None:intergenic
TGCATTAGCAAAGTTCTCGG+CGG 0.703055 2_4:-5109142 None:intergenic
TGATTTGGCTTCCAACCACG+TGG 0.709465 2_4:-5108099 None:intergenic
TTCCACCAAATCTAACACCA+GGG 0.730328 2_4:-5108535 None:intergenic
GGAGAACAAGGCTACCCAGG+GGG 0.731673 2_4:+5109168 Msa0310270:CDS
GTGTGTGAGAGAGAACCTGA+AGG 0.733454 2_4:-5108227 None:intergenic
AGTGGAACATGGTGTCCACG+TGG 0.737131 2_4:+5108084 Msa0310270:five_prime_UTR
CGGAGAACAAGGCTACCCAG+GGG 0.738163 2_4:+5109167 Msa0310270:CDS
TACAAGCCAAGAGCACCAAG+GGG 0.741553 2_4:-5109354 None:intergenic
AAAAGATAGAAAGAGCACAG+TGG 0.743548 2_4:+5108061 Msa0310270:five_prime_UTR
GTGTGAGAGAGAACCTGAAG+GGG 0.761994 2_4:-5108225 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATAATCAATTCTAA+AGG - chr2_4:5108621-5108640 None:intergenic 15.0%
!! AAACAAATGTAAAGATAAAT+TGG + chr2_4:5109621-5109640 Msa0310270:three_prime_UTR 15.0%
!! GAAAAAATAATCAATTCTAA+AGG - chr2_4:5108621-5108640 None:intergenic 15.0%
!! AAACAAATGTAAAGATAAAT+TGG + chr2_4:5109621-5109640 Msa0310270:three_prime_UTR 15.0%
!! AATCTAAACAAGAAATCTTA+AGG - chr2_4:5108176-5108195 None:intergenic 20.0%
!!! TAAAATCGATTTAAGTTAAG+TGG - chr2_4:5108598-5108617 None:intergenic 20.0%
!! AATAAATTTAAGTAAACGTG+TGG - chr2_4:5108684-5108703 None:intergenic 20.0%
!! AACATGAATTAAATTTGTCA+TGG - chr2_4:5109458-5109477 None:intergenic 20.0%
!! TTTAATTCATGTTCTAATGT+TGG + chr2_4:5109465-5109484 Msa0310270:three_prime_UTR 20.0%
!! AATCTAAACAAGAAATCTTA+AGG - chr2_4:5108176-5108195 None:intergenic 20.0%
!!! TAAAATCGATTTAAGTTAAG+TGG - chr2_4:5108598-5108617 None:intergenic 20.0%
!! AATAAATTTAAGTAAACGTG+TGG - chr2_4:5108684-5108703 None:intergenic 20.0%
!! AACATGAATTAAATTTGTCA+TGG - chr2_4:5109458-5109477 None:intergenic 20.0%
!! TTTAATTCATGTTCTAATGT+TGG + chr2_4:5109465-5109484 Msa0310270:three_prime_UTR 20.0%
! AGTGTAAAAGATAAGACAAA+TGG + chr2_4:5108334-5108353 Msa0310270:exon 25.0%
!!! TTTTTCAATTGTAGATTACC+AGG + chr2_4:5108814-5108833 Msa0310270:intron 25.0%
! TATGGATCAAACAGATATAT+AGG - chr2_4:5109547-5109566 None:intergenic 25.0%
! AGTGTAAAAGATAAGACAAA+TGG + chr2_4:5108334-5108353 Msa0310270:exon 25.0%
!!! TTTTTCAATTGTAGATTACC+AGG + chr2_4:5108814-5108833 Msa0310270:intron 25.0%
! TATGGATCAAACAGATATAT+AGG - chr2_4:5109547-5109566 None:intergenic 25.0%
AGAAATCTTAAGGTATATCG+TGG - chr2_4:5108166-5108185 None:intergenic 30.0%
TTAGATTTCATTGTCCTACA+TGG + chr2_4:5108189-5108208 Msa0310270:five_prime_UTR 30.0%
AGTAATAGTCTAATAGAGAC+TGG - chr2_4:5108298-5108317 None:intergenic 30.0%
AATTTAAGTAAACGTGTGGA+AGG - chr2_4:5108680-5108699 None:intergenic 30.0%
CAGATATATAGGTAAATGCA+AGG - chr2_4:5109536-5109555 None:intergenic 30.0%
GTTAGACTTTGTATGCATAT+TGG - chr2_4:5109579-5109598 None:intergenic 30.0%
AGAAATCTTAAGGTATATCG+TGG - chr2_4:5108166-5108185 None:intergenic 30.0%
TTAGATTTCATTGTCCTACA+TGG + chr2_4:5108189-5108208 Msa0310270:five_prime_UTR 30.0%
AGTAATAGTCTAATAGAGAC+TGG - chr2_4:5108298-5108317 None:intergenic 30.0%
AATTTAAGTAAACGTGTGGA+AGG - chr2_4:5108680-5108699 None:intergenic 30.0%
CAGATATATAGGTAAATGCA+AGG - chr2_4:5109536-5109555 None:intergenic 30.0%
GTTAGACTTTGTATGCATAT+TGG - chr2_4:5109579-5109598 None:intergenic 30.0%
! AAAAGATAGAAAGAGCACAG+TGG + chr2_4:5108061-5108080 Msa0310270:five_prime_UTR 35.0%
ATTTCCATCCTAAGCTGATT+TGG - chr2_4:5108117-5108136 None:intergenic 35.0%
GATGGAAATCCATTTCCTAT+TGG + chr2_4:5108128-5108147 Msa0310270:five_prime_UTR 35.0%
! GATTTTGGACCAATAGGAAA+TGG - chr2_4:5108140-5108159 None:intergenic 35.0%
! TGGATAGATTTTGGACCAAT+AGG - chr2_4:5108146-5108165 None:intergenic 35.0%
! GGTATATCGTGGATAGATTT+TGG - chr2_4:5108155-5108174 None:intergenic 35.0%
AATAGCAGTAGTAGCTAACA+AGG - chr2_4:5108432-5108451 None:intergenic 35.0%
TTGTTAGCTACTACTGCTAT+TGG + chr2_4:5108431-5108450 Msa0310270:CDS 35.0%
! GCAGCAACAATAAGTCTTTT+AGG - chr2_4:5108485-5108504 None:intergenic 35.0%
TGTACCATTTGAGAAATGCT+GGG - chr2_4:5108876-5108895 None:intergenic 35.0%
! AATGTAAACTCCGTTTTCGA+TGG - chr2_4:5109226-5109245 None:intergenic 35.0%
!!! CTGATTTTCTACTTTGAAGC+TGG + chr2_4:5109318-5109337 Msa0310270:CDS 35.0%
AACCTTTGTCATAAGCAAGA+AGG + chr2_4:5109596-5109615 Msa0310270:three_prime_UTR 35.0%
TACCTTCTTGCTTATGACAA+AGG - chr2_4:5109601-5109620 None:intergenic 35.0%
! AAAAGATAGAAAGAGCACAG+TGG + chr2_4:5108061-5108080 Msa0310270:five_prime_UTR 35.0%
ATTTCCATCCTAAGCTGATT+TGG - chr2_4:5108117-5108136 None:intergenic 35.0%
GATGGAAATCCATTTCCTAT+TGG + chr2_4:5108128-5108147 Msa0310270:five_prime_UTR 35.0%
! GATTTTGGACCAATAGGAAA+TGG - chr2_4:5108140-5108159 None:intergenic 35.0%
! TGGATAGATTTTGGACCAAT+AGG - chr2_4:5108146-5108165 None:intergenic 35.0%
! GGTATATCGTGGATAGATTT+TGG - chr2_4:5108155-5108174 None:intergenic 35.0%
AATAGCAGTAGTAGCTAACA+AGG - chr2_4:5108432-5108451 None:intergenic 35.0%
TTGTTAGCTACTACTGCTAT+TGG + chr2_4:5108431-5108450 Msa0310270:CDS 35.0%
! GCAGCAACAATAAGTCTTTT+AGG - chr2_4:5108485-5108504 None:intergenic 35.0%
TGTACCATTTGAGAAATGCT+GGG - chr2_4:5108876-5108895 None:intergenic 35.0%
! AATGTAAACTCCGTTTTCGA+TGG - chr2_4:5109226-5109245 None:intergenic 35.0%
!!! CTGATTTTCTACTTTGAAGC+TGG + chr2_4:5109318-5109337 Msa0310270:CDS 35.0%
AACCTTTGTCATAAGCAAGA+AGG + chr2_4:5109596-5109615 Msa0310270:three_prime_UTR 35.0%
TACCTTCTTGCTTATGACAA+AGG - chr2_4:5109601-5109620 None:intergenic 35.0%
! GTTTTCAAAGAAGGCCATGT+AGG - chr2_4:5108206-5108225 None:intergenic 40.0%
!!! GACTGGTTTTGTAGTTCACT+TGG - chr2_4:5108281-5108300 None:intergenic 40.0%
TTGGGATCTTCCTTCTTATC+TGG + chr2_4:5108389-5108408 Msa0310270:CDS 40.0%
CAGTAGTAGCTAACAAGGTT+TGG - chr2_4:5108427-5108446 None:intergenic 40.0%
TTCCACCAAATCTAACACCA+GGG - chr2_4:5108538-5108557 None:intergenic 40.0%
TTTCCACCAAATCTAACACC+AGG - chr2_4:5108539-5108558 None:intergenic 40.0%
TGTAGATTACCAGGTGACTT+TGG + chr2_4:5108823-5108842 Msa0310270:intron 40.0%
CTGTACCATTTGAGAAATGC+TGG - chr2_4:5108877-5108896 None:intergenic 40.0%
AGAGAAGCTGAGCTTATTCA+TGG + chr2_4:5108895-5108914 Msa0310270:CDS 40.0%
AAGCTGAGCTTATTCATGGA+AGG + chr2_4:5108899-5108918 Msa0310270:CDS 40.0%
TGAGCTTATTCATGGAAGGT+GGG + chr2_4:5108903-5108922 Msa0310270:CDS 40.0%
AGAATGGAGCAATTGCATTG+GGG - chr2_4:5109002-5109021 None:intergenic 40.0%
GAGAATGGAGCAATTGCATT+GGG - chr2_4:5109003-5109022 None:intergenic 40.0%
!! AGAAGAGTACCAAAGGAGAA+TGG - chr2_4:5109018-5109037 None:intergenic 40.0%
TTCTCCTTTGGTACTCTTCT+AGG + chr2_4:5109018-5109037 Msa0310270:CDS 40.0%
ATTCGATTGACTGTGAATCC+GGG - chr2_4:5109101-5109120 None:intergenic 40.0%
CATTCGATTGACTGTGAATC+CGG - chr2_4:5109102-5109121 None:intergenic 40.0%
GGATTCACAGTCAATCGAAT+GGG + chr2_4:5109101-5109120 Msa0310270:CDS 40.0%
GGTTGCATTAGCAAAGTTCT+CGG - chr2_4:5109148-5109167 None:intergenic 40.0%
GAGAACTTTGCTAATGCAAC+CGG + chr2_4:5109147-5109166 Msa0310270:CDS 40.0%
GAAGCTAGAGAGATTGAAAC+TGG + chr2_4:5109257-5109276 Msa0310270:CDS 40.0%
!! TTCTACTTTGAAGCTGGACA+AGG + chr2_4:5109324-5109343 Msa0310270:CDS 40.0%
!! TCTACTTTGAAGCTGGACAA+GGG + chr2_4:5109325-5109344 Msa0310270:CDS 40.0%
! GCATATTGGCTACACATGTA+TGG - chr2_4:5109565-5109584 None:intergenic 40.0%
! GTTTTCAAAGAAGGCCATGT+AGG - chr2_4:5108206-5108225 None:intergenic 40.0%
!!! GACTGGTTTTGTAGTTCACT+TGG - chr2_4:5108281-5108300 None:intergenic 40.0%
TTGGGATCTTCCTTCTTATC+TGG + chr2_4:5108389-5108408 Msa0310270:CDS 40.0%
CAGTAGTAGCTAACAAGGTT+TGG - chr2_4:5108427-5108446 None:intergenic 40.0%
TTCCACCAAATCTAACACCA+GGG - chr2_4:5108538-5108557 None:intergenic 40.0%
TTTCCACCAAATCTAACACC+AGG - chr2_4:5108539-5108558 None:intergenic 40.0%
TGTAGATTACCAGGTGACTT+TGG + chr2_4:5108823-5108842 Msa0310270:intron 40.0%
CTGTACCATTTGAGAAATGC+TGG - chr2_4:5108877-5108896 None:intergenic 40.0%
AGAGAAGCTGAGCTTATTCA+TGG + chr2_4:5108895-5108914 Msa0310270:CDS 40.0%
AAGCTGAGCTTATTCATGGA+AGG + chr2_4:5108899-5108918 Msa0310270:CDS 40.0%
TGAGCTTATTCATGGAAGGT+GGG + chr2_4:5108903-5108922 Msa0310270:CDS 40.0%
AGAATGGAGCAATTGCATTG+GGG - chr2_4:5109002-5109021 None:intergenic 40.0%
GAGAATGGAGCAATTGCATT+GGG - chr2_4:5109003-5109022 None:intergenic 40.0%
!! AGAAGAGTACCAAAGGAGAA+TGG - chr2_4:5109018-5109037 None:intergenic 40.0%
TTCTCCTTTGGTACTCTTCT+AGG + chr2_4:5109018-5109037 Msa0310270:CDS 40.0%
ATTCGATTGACTGTGAATCC+GGG - chr2_4:5109101-5109120 None:intergenic 40.0%
CATTCGATTGACTGTGAATC+CGG - chr2_4:5109102-5109121 None:intergenic 40.0%
GGATTCACAGTCAATCGAAT+GGG + chr2_4:5109101-5109120 Msa0310270:CDS 40.0%
GGTTGCATTAGCAAAGTTCT+CGG - chr2_4:5109148-5109167 None:intergenic 40.0%
GAGAACTTTGCTAATGCAAC+CGG + chr2_4:5109147-5109166 Msa0310270:CDS 40.0%
GAAGCTAGAGAGATTGAAAC+TGG + chr2_4:5109257-5109276 Msa0310270:CDS 40.0%
!! TTCTACTTTGAAGCTGGACA+AGG + chr2_4:5109324-5109343 Msa0310270:CDS 40.0%
!! TCTACTTTGAAGCTGGACAA+GGG + chr2_4:5109325-5109344 Msa0310270:CDS 40.0%
! GCATATTGGCTACACATGTA+TGG - chr2_4:5109565-5109584 None:intergenic 40.0%
! ATAGAAAGAGCACAGTGGAG+TGG + chr2_4:5108066-5108085 Msa0310270:five_prime_UTR 45.0%
GTTGGAAGCCAAATCAGCTT+AGG + chr2_4:5108106-5108125 Msa0310270:five_prime_UTR 45.0%
GAAGCCAAATCAGCTTAGGA+TGG + chr2_4:5108110-5108129 Msa0310270:five_prime_UTR 45.0%
! CCTGAAGGGGTTTTCAAAGA+AGG - chr2_4:5108215-5108234 None:intergenic 45.0%
! CCTTCTTTGAAAACCCCTTC+AGG + chr2_4:5108212-5108231 Msa0310270:five_prime_UTR 45.0%
TGTGTGAGAGAGAACCTGAA+GGG - chr2_4:5108229-5108248 None:intergenic 45.0%
!! ACATCTGGTGCTGTGTTGAA+TGG + chr2_4:5108365-5108384 Msa0310270:CDS 45.0%
!! TGGTGCTGTGTTGAATGGTT+TGG + chr2_4:5108370-5108389 Msa0310270:CDS 45.0%
! GGTGCTGTGTTGAATGGTTT+GGG + chr2_4:5108371-5108390 Msa0310270:CDS 45.0%
GGATCTTCCTTCTTATCTGG+AGG + chr2_4:5108392-5108411 Msa0310270:CDS 45.0%
CCTCTTACCTCCAGATAAGA+AGG - chr2_4:5108402-5108421 None:intergenic 45.0%
CCTTCTTATCTGGAGGTAAG+AGG + chr2_4:5108399-5108418 Msa0310270:CDS 45.0%
ACTACTGCTATTGGAGCCAA+AGG + chr2_4:5108440-5108459 Msa0310270:CDS 45.0%
CTTCTGCACCAAAGAAGTCA+TGG + chr2_4:5108510-5108529 Msa0310270:CDS 45.0%
! TGGATCCCTGGTGTTAGATT+TGG + chr2_4:5108530-5108549 Msa0310270:CDS 45.0%
! ATCCCTGGTGTTAGATTTGG+TGG + chr2_4:5108533-5108552 Msa0310270:CDS 45.0%
!!! GACTTTGGTTTTGACCCACT+AGG + chr2_4:5108838-5108857 Msa0310270:CDS 45.0%
AGGACCCAGCATTTCTCAAA+TGG + chr2_4:5108869-5108888 Msa0310270:CDS 45.0%
CTGAGCTTATTCATGGAAGG+TGG + chr2_4:5108902-5108921 Msa0310270:CDS 45.0%
TATTCATGGAAGGTGGGCAA+TGG + chr2_4:5108909-5108928 Msa0310270:CDS 45.0%
!! GCAGTTCTAGGCATCTTTGT+TGG + chr2_4:5108934-5108953 Msa0310270:CDS 45.0%
TCTAGGCATCTTTGTTGGTC+AGG + chr2_4:5108939-5108958 Msa0310270:CDS 45.0%
GGAGAATGGAGCAATTGCAT+TGG - chr2_4:5109004-5109023 None:intergenic 45.0%
GCAATTGCTCCATTCTCCTT+TGG + chr2_4:5109006-5109025 Msa0310270:CDS 45.0%
!! AGTGCCTAGAAGAGTACCAA+AGG - chr2_4:5109025-5109044 None:intergenic 45.0%
! AGGCACTCAGTTGATTCTCA+TGG + chr2_4:5109038-5109057 Msa0310270:CDS 45.0%
! GGCACTCAGTTGATTCTCAT+GGG + chr2_4:5109039-5109058 Msa0310270:CDS 45.0%
! GCACTCAGTTGATTCTCATG+GGG + chr2_4:5109040-5109059 Msa0310270:CDS 45.0%
! TCAGTTGATTCTCATGGGGT+GGG + chr2_4:5109044-5109063 Msa0310270:CDS 45.0%
! ATGGGTCGATTTCTTCAACC+CGG + chr2_4:5109080-5109099 Msa0310270:CDS 45.0%
CGGATTCACAGTCAATCGAA+TGG + chr2_4:5109100-5109119 Msa0310270:CDS 45.0%
TGCATTAGCAAAGTTCTCGG+CGG - chr2_4:5109145-5109164 None:intergenic 45.0%
! GTTTTCGATGGTACCAGCAA+GGG - chr2_4:5109214-5109233 None:intergenic 45.0%
CTTGCTGGTACCATCGAAAA+CGG + chr2_4:5109213-5109232 Msa0310270:CDS 45.0%
! CTCTCTAGCTTCTCTGTATC+TGG - chr2_4:5109249-5109268 None:intergenic 45.0%
TGGCTGAGATTAAGCATGCT+AGG + chr2_4:5109277-5109296 Msa0310270:CDS 45.0%
!! TTACAAGCCAAGAGCACCAA+GGG - chr2_4:5109358-5109377 None:intergenic 45.0%
!! TTTACAAGCCAAGAGCACCA+AGG - chr2_4:5109359-5109378 None:intergenic 45.0%
TGTCATGGAGTAGCACACTT+AGG - chr2_4:5109443-5109462 None:intergenic 45.0%
! ATAGAAAGAGCACAGTGGAG+TGG + chr2_4:5108066-5108085 Msa0310270:five_prime_UTR 45.0%
GTTGGAAGCCAAATCAGCTT+AGG + chr2_4:5108106-5108125 Msa0310270:five_prime_UTR 45.0%
GAAGCCAAATCAGCTTAGGA+TGG + chr2_4:5108110-5108129 Msa0310270:five_prime_UTR 45.0%
! CCTGAAGGGGTTTTCAAAGA+AGG - chr2_4:5108215-5108234 None:intergenic 45.0%
! CCTTCTTTGAAAACCCCTTC+AGG + chr2_4:5108212-5108231 Msa0310270:five_prime_UTR 45.0%
TGTGTGAGAGAGAACCTGAA+GGG - chr2_4:5108229-5108248 None:intergenic 45.0%
!! ACATCTGGTGCTGTGTTGAA+TGG + chr2_4:5108365-5108384 Msa0310270:CDS 45.0%
!! TGGTGCTGTGTTGAATGGTT+TGG + chr2_4:5108370-5108389 Msa0310270:CDS 45.0%
! GGTGCTGTGTTGAATGGTTT+GGG + chr2_4:5108371-5108390 Msa0310270:CDS 45.0%
GGATCTTCCTTCTTATCTGG+AGG + chr2_4:5108392-5108411 Msa0310270:CDS 45.0%
CCTCTTACCTCCAGATAAGA+AGG - chr2_4:5108402-5108421 None:intergenic 45.0%
CCTTCTTATCTGGAGGTAAG+AGG + chr2_4:5108399-5108418 Msa0310270:CDS 45.0%
ACTACTGCTATTGGAGCCAA+AGG + chr2_4:5108440-5108459 Msa0310270:CDS 45.0%
CTTCTGCACCAAAGAAGTCA+TGG + chr2_4:5108510-5108529 Msa0310270:CDS 45.0%
! TGGATCCCTGGTGTTAGATT+TGG + chr2_4:5108530-5108549 Msa0310270:CDS 45.0%
! ATCCCTGGTGTTAGATTTGG+TGG + chr2_4:5108533-5108552 Msa0310270:CDS 45.0%
!!! GACTTTGGTTTTGACCCACT+AGG + chr2_4:5108838-5108857 Msa0310270:CDS 45.0%
AGGACCCAGCATTTCTCAAA+TGG + chr2_4:5108869-5108888 Msa0310270:CDS 45.0%
CTGAGCTTATTCATGGAAGG+TGG + chr2_4:5108902-5108921 Msa0310270:CDS 45.0%
TATTCATGGAAGGTGGGCAA+TGG + chr2_4:5108909-5108928 Msa0310270:CDS 45.0%
!! GCAGTTCTAGGCATCTTTGT+TGG + chr2_4:5108934-5108953 Msa0310270:CDS 45.0%
TCTAGGCATCTTTGTTGGTC+AGG + chr2_4:5108939-5108958 Msa0310270:CDS 45.0%
GGAGAATGGAGCAATTGCAT+TGG - chr2_4:5109004-5109023 None:intergenic 45.0%
GCAATTGCTCCATTCTCCTT+TGG + chr2_4:5109006-5109025 Msa0310270:CDS 45.0%
!! AGTGCCTAGAAGAGTACCAA+AGG - chr2_4:5109025-5109044 None:intergenic 45.0%
! AGGCACTCAGTTGATTCTCA+TGG + chr2_4:5109038-5109057 Msa0310270:CDS 45.0%
! GGCACTCAGTTGATTCTCAT+GGG + chr2_4:5109039-5109058 Msa0310270:CDS 45.0%
! GCACTCAGTTGATTCTCATG+GGG + chr2_4:5109040-5109059 Msa0310270:CDS 45.0%
! TCAGTTGATTCTCATGGGGT+GGG + chr2_4:5109044-5109063 Msa0310270:CDS 45.0%
! ATGGGTCGATTTCTTCAACC+CGG + chr2_4:5109080-5109099 Msa0310270:CDS 45.0%
CGGATTCACAGTCAATCGAA+TGG + chr2_4:5109100-5109119 Msa0310270:CDS 45.0%
TGCATTAGCAAAGTTCTCGG+CGG - chr2_4:5109145-5109164 None:intergenic 45.0%
! GTTTTCGATGGTACCAGCAA+GGG - chr2_4:5109214-5109233 None:intergenic 45.0%
CTTGCTGGTACCATCGAAAA+CGG + chr2_4:5109213-5109232 Msa0310270:CDS 45.0%
! CTCTCTAGCTTCTCTGTATC+TGG - chr2_4:5109249-5109268 None:intergenic 45.0%
TGGCTGAGATTAAGCATGCT+AGG + chr2_4:5109277-5109296 Msa0310270:CDS 45.0%
!! TTACAAGCCAAGAGCACCAA+GGG - chr2_4:5109358-5109377 None:intergenic 45.0%
!! TTTACAAGCCAAGAGCACCA+AGG - chr2_4:5109359-5109378 None:intergenic 45.0%
TGTCATGGAGTAGCACACTT+AGG - chr2_4:5109443-5109462 None:intergenic 45.0%
! TGATTTGGCTTCCAACCACG+TGG - chr2_4:5108102-5108121 None:intergenic 50.0%
GTGTGAGAGAGAACCTGAAG+GGG - chr2_4:5108228-5108247 None:intergenic 50.0%
GTGTGTGAGAGAGAACCTGA+AGG - chr2_4:5108230-5108249 None:intergenic 50.0%
CAAATGGCAGCTGCAACATC+TGG + chr2_4:5108350-5108369 Msa0310270:exon 50.0%
ACTGCTATTGGAGCCAAAGG+TGG + chr2_4:5108443-5108462 Msa0310270:CDS 50.0%
CCAGGGATCCATGACTTCTT+TGG - chr2_4:5108521-5108540 None:intergenic 50.0%
CCAAAGAAGTCATGGATCCC+TGG + chr2_4:5108518-5108537 Msa0310270:CDS 50.0%
ACGATCCATCGAGCCATTCT+GGG - chr2_4:5108571-5108590 None:intergenic 50.0%
TACGATCCATCGAGCCATTC+TGG - chr2_4:5108572-5108591 None:intergenic 50.0%
GGGTCAAAACCAAAGTCACC+TGG - chr2_4:5108835-5108854 None:intergenic 50.0%
GCATCTTTGTTGGTCAGGCA+TGG + chr2_4:5108944-5108963 Msa0310270:CDS 50.0%
TTTGTTGGTCAGGCATGGAG+TGG + chr2_4:5108949-5108968 Msa0310270:CDS 50.0%
GAGTGGAGTTCCATGGTTTG+AGG + chr2_4:5108966-5108985 Msa0310270:CDS 50.0%
! CTCAGTTGATTCTCATGGGG+TGG + chr2_4:5109043-5109062 Msa0310270:CDS 50.0%
GTGGGTAGAGAGCAAGAGAT+GGG + chr2_4:5109062-5109081 Msa0310270:CDS 50.0%
! TTCTCGGCGGTTTTTGACCA+TGG - chr2_4:5109132-5109151 None:intergenic 50.0%
GCTAATGCAACCGGAGAACA+AGG + chr2_4:5109156-5109175 Msa0310270:CDS 50.0%
! GGTCGAAGAATTTTCCCCCT+GGG - chr2_4:5109185-5109204 None:intergenic 50.0%
TGGTACCAGCAAGGGACAAT+GGG - chr2_4:5109206-5109225 None:intergenic 50.0%
ATGGTACCAGCAAGGGACAA+TGG - chr2_4:5109207-5109226 None:intergenic 50.0%
! CGTTTTCGATGGTACCAGCA+AGG - chr2_4:5109215-5109234 None:intergenic 50.0%
!! GCATGCTAGGCTTGCTATGT+TGG + chr2_4:5109290-5109309 Msa0310270:CDS 50.0%
!! TACAAGCCAAGAGCACCAAG+GGG - chr2_4:5109357-5109376 None:intergenic 50.0%
! TGATTTGGCTTCCAACCACG+TGG - chr2_4:5108102-5108121 None:intergenic 50.0%
GTGTGAGAGAGAACCTGAAG+GGG - chr2_4:5108228-5108247 None:intergenic 50.0%
GTGTGTGAGAGAGAACCTGA+AGG - chr2_4:5108230-5108249 None:intergenic 50.0%
CAAATGGCAGCTGCAACATC+TGG + chr2_4:5108350-5108369 Msa0310270:exon 50.0%
ACTGCTATTGGAGCCAAAGG+TGG + chr2_4:5108443-5108462 Msa0310270:CDS 50.0%
CCAGGGATCCATGACTTCTT+TGG - chr2_4:5108521-5108540 None:intergenic 50.0%
CCAAAGAAGTCATGGATCCC+TGG + chr2_4:5108518-5108537 Msa0310270:CDS 50.0%
ACGATCCATCGAGCCATTCT+GGG - chr2_4:5108571-5108590 None:intergenic 50.0%
TACGATCCATCGAGCCATTC+TGG - chr2_4:5108572-5108591 None:intergenic 50.0%
GGGTCAAAACCAAAGTCACC+TGG - chr2_4:5108835-5108854 None:intergenic 50.0%
GCATCTTTGTTGGTCAGGCA+TGG + chr2_4:5108944-5108963 Msa0310270:CDS 50.0%
TTTGTTGGTCAGGCATGGAG+TGG + chr2_4:5108949-5108968 Msa0310270:CDS 50.0%
GAGTGGAGTTCCATGGTTTG+AGG + chr2_4:5108966-5108985 Msa0310270:CDS 50.0%
! CTCAGTTGATTCTCATGGGG+TGG + chr2_4:5109043-5109062 Msa0310270:CDS 50.0%
GTGGGTAGAGAGCAAGAGAT+GGG + chr2_4:5109062-5109081 Msa0310270:CDS 50.0%
! TTCTCGGCGGTTTTTGACCA+TGG - chr2_4:5109132-5109151 None:intergenic 50.0%
GCTAATGCAACCGGAGAACA+AGG + chr2_4:5109156-5109175 Msa0310270:CDS 50.0%
! GGTCGAAGAATTTTCCCCCT+GGG - chr2_4:5109185-5109204 None:intergenic 50.0%
TGGTACCAGCAAGGGACAAT+GGG - chr2_4:5109206-5109225 None:intergenic 50.0%
ATGGTACCAGCAAGGGACAA+TGG - chr2_4:5109207-5109226 None:intergenic 50.0%
! CGTTTTCGATGGTACCAGCA+AGG - chr2_4:5109215-5109234 None:intergenic 50.0%
!! GCATGCTAGGCTTGCTATGT+TGG + chr2_4:5109290-5109309 Msa0310270:CDS 50.0%
!! TACAAGCCAAGAGCACCAAG+GGG - chr2_4:5109357-5109376 None:intergenic 50.0%
GAGCACAGTGGAGTGGAACA+TGG + chr2_4:5108073-5108092 Msa0310270:five_prime_UTR 55.0%
AGTGGAACATGGTGTCCACG+TGG + chr2_4:5108084-5108103 Msa0310270:five_prime_UTR 55.0%
GAACATGGTGTCCACGTGGT+TGG + chr2_4:5108088-5108107 Msa0310270:five_prime_UTR 55.0%
ACCAGCTGCAACACCACCTT+TGG - chr2_4:5108459-5108478 None:intergenic 55.0%
GAAACCTCGTCGACCCAGAA+TGG + chr2_4:5108555-5108574 Msa0310270:CDS 55.0%
!! GGTTTTGACCCACTAGGCCT+TGG + chr2_4:5108844-5108863 Msa0310270:CDS 55.0%
GAAATGCTGGGTCCTTGCCA+AGG - chr2_4:5108864-5108883 None:intergenic 55.0%
TGGGCAATGGCTGCAGTTCT+AGG + chr2_4:5108922-5108941 Msa0310270:CDS 55.0%
AGGCATGGAGTGGAGTTCCA+TGG + chr2_4:5108959-5108978 Msa0310270:CDS 55.0%
! GGAGTTCCATGGTTTGAGGC+TGG + chr2_4:5108970-5108989 Msa0310270:CDS 55.0%
TCAGCTCCAGCCTCAAACCA+TGG - chr2_4:5108979-5108998 None:intergenic 55.0%
GGTGGGTAGAGAGCAAGAGA+TGG + chr2_4:5109061-5109080 Msa0310270:CDS 55.0%
CAATCGAATGGGCCACTCCA+TGG + chr2_4:5109112-5109131 Msa0310270:CDS 55.0%
! GGCGGTTTTTGACCATGGAG+TGG - chr2_4:5109127-5109146 None:intergenic 55.0%
! GGGTCGAAGAATTTTCCCCC+TGG - chr2_4:5109186-5109205 None:intergenic 55.0%
TTCGACCCATTGTCCCTTGC+TGG + chr2_4:5109198-5109217 Msa0310270:CDS 55.0%
!! AAGACTCCCCTTGGTGCTCT+TGG + chr2_4:5109348-5109367 Msa0310270:CDS 55.0%
GAGCACAGTGGAGTGGAACA+TGG + chr2_4:5108073-5108092 Msa0310270:five_prime_UTR 55.0%
AGTGGAACATGGTGTCCACG+TGG + chr2_4:5108084-5108103 Msa0310270:five_prime_UTR 55.0%
GAACATGGTGTCCACGTGGT+TGG + chr2_4:5108088-5108107 Msa0310270:five_prime_UTR 55.0%
ACCAGCTGCAACACCACCTT+TGG - chr2_4:5108459-5108478 None:intergenic 55.0%
GAAACCTCGTCGACCCAGAA+TGG + chr2_4:5108555-5108574 Msa0310270:CDS 55.0%
!! GGTTTTGACCCACTAGGCCT+TGG + chr2_4:5108844-5108863 Msa0310270:CDS 55.0%
GAAATGCTGGGTCCTTGCCA+AGG - chr2_4:5108864-5108883 None:intergenic 55.0%
TGGGCAATGGCTGCAGTTCT+AGG + chr2_4:5108922-5108941 Msa0310270:CDS 55.0%
AGGCATGGAGTGGAGTTCCA+TGG + chr2_4:5108959-5108978 Msa0310270:CDS 55.0%
! GGAGTTCCATGGTTTGAGGC+TGG + chr2_4:5108970-5108989 Msa0310270:CDS 55.0%
TCAGCTCCAGCCTCAAACCA+TGG - chr2_4:5108979-5108998 None:intergenic 55.0%
GGTGGGTAGAGAGCAAGAGA+TGG + chr2_4:5109061-5109080 Msa0310270:CDS 55.0%
CAATCGAATGGGCCACTCCA+TGG + chr2_4:5109112-5109131 Msa0310270:CDS 55.0%
! GGCGGTTTTTGACCATGGAG+TGG - chr2_4:5109127-5109146 None:intergenic 55.0%
! GGGTCGAAGAATTTTCCCCC+TGG - chr2_4:5109186-5109205 None:intergenic 55.0%
TTCGACCCATTGTCCCTTGC+TGG + chr2_4:5109198-5109217 Msa0310270:CDS 55.0%
!! AAGACTCCCCTTGGTGCTCT+TGG + chr2_4:5109348-5109367 Msa0310270:CDS 55.0%
!! GCCAAAGGTGGTGTTGCAGC+TGG + chr2_4:5108455-5108474 Msa0310270:CDS 60.0%
GTCGACCCAGAATGGCTCGA+TGG + chr2_4:5108563-5108582 Msa0310270:CDS 60.0%
TGACCCACTAGGCCTTGGCA+AGG + chr2_4:5108849-5108868 Msa0310270:CDS 60.0%
GGTCCTTGCCAAGGCCTAGT+GGG - chr2_4:5108855-5108874 None:intergenic 60.0%
ACCGGAGAACAAGGCTACCC+AGG + chr2_4:5109165-5109184 Msa0310270:CDS 60.0%
!! CCCTGGGTAGCCTTGTTCTC+CGG - chr2_4:5109169-5109188 None:intergenic 60.0%
CCGGAGAACAAGGCTACCCA+GGG + chr2_4:5109166-5109185 Msa0310270:CDS 60.0%
CGGAGAACAAGGCTACCCAG+GGG + chr2_4:5109167-5109186 Msa0310270:CDS 60.0%
GGAGAACAAGGCTACCCAGG+GGG + chr2_4:5109168-5109187 Msa0310270:CDS 60.0%
GGACAAGGGAAGACTCCCCT+TGG + chr2_4:5109339-5109358 Msa0310270:CDS 60.0%
!! GCCAAAGGTGGTGTTGCAGC+TGG + chr2_4:5108455-5108474 Msa0310270:CDS 60.0%
GTCGACCCAGAATGGCTCGA+TGG + chr2_4:5108563-5108582 Msa0310270:CDS 60.0%
TGACCCACTAGGCCTTGGCA+AGG + chr2_4:5108849-5108868 Msa0310270:CDS 60.0%
GGTCCTTGCCAAGGCCTAGT+GGG - chr2_4:5108855-5108874 None:intergenic 60.0%
ACCGGAGAACAAGGCTACCC+AGG + chr2_4:5109165-5109184 Msa0310270:CDS 60.0%
!! CCCTGGGTAGCCTTGTTCTC+CGG - chr2_4:5109169-5109188 None:intergenic 60.0%
CCGGAGAACAAGGCTACCCA+GGG + chr2_4:5109166-5109185 Msa0310270:CDS 60.0%
CGGAGAACAAGGCTACCCAG+GGG + chr2_4:5109167-5109186 Msa0310270:CDS 60.0%
GGAGAACAAGGCTACCCAGG+GGG + chr2_4:5109168-5109187 Msa0310270:CDS 60.0%
GGACAAGGGAAGACTCCCCT+TGG + chr2_4:5109339-5109358 Msa0310270:CDS 60.0%
CGAGCCATTCTGGGTCGACG+AGG - chr2_4:5108562-5108581 None:intergenic 65.0%
GGGTCCTTGCCAAGGCCTAG+TGG - chr2_4:5108856-5108875 None:intergenic 65.0%
CGAGCCATTCTGGGTCGACG+AGG - chr2_4:5108562-5108581 None:intergenic 65.0%
GGGTCCTTGCCAAGGCCTAG+TGG - chr2_4:5108856-5108875 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 5108049 5109683 5108049 ID=Msa0310270;Name=Msa0310270
chr2_4 mRNA 5108049 5109683 5108049 ID=Msa0310270-mRNA-1;Parent=Msa0310270;Name=Msa0310270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=304|1|1|1|1|1|2|306|261
chr2_4 exon 5108049 5108588 5108049 ID=Msa0310270-mRNA-1:exon:1754;Parent=Msa0310270-mRNA-1
chr2_4 exon 5108828 5109683 5108828 ID=Msa0310270-mRNA-1:exon:1755;Parent=Msa0310270-mRNA-1
chr2_4 five_prime_UTR 5108049 5108352 5108049 ID=Msa0310270-mRNA-1:five_prime_utr;Parent=Msa0310270-mRNA-1
chr2_4 CDS 5108353 5108588 5108353 ID=Msa0310270-mRNA-1:cds;Parent=Msa0310270-mRNA-1
chr2_4 CDS 5108828 5109377 5108828 ID=Msa0310270-mRNA-1:cds;Parent=Msa0310270-mRNA-1
chr2_4 three_prime_UTR 5109378 5109683 5109378 ID=Msa0310270-mRNA-1:three_prime_utr;Parent=Msa0310270-mRNA-1
Gene Sequence

>Msa0310270

ATGGCAGCTGCAACATCTGGTGCTGTGTTGAATGGTTTGGGATCTTCCTTCTTATCTGGAGGTAAGAGGAGCCAAACCTTGTTAGCTACTACTGCTATTGGAGCCAAAGGTGGTGTTGCAGCTGGTAGTCCTAAAAGACTTATTGTTGCTGCTGCTGCTTCTGCACCAAAGAAGTCATGGATCCCTGGTGTTAGATTTGGTGGAAACCTCGTCGACCCAGAATGGCTCGATGGATCATTACCAGGTGACTTTGGTTTTGACCCACTAGGCCTTGGCAAGGACCCAGCATTTCTCAAATGGTACAGAGAAGCTGAGCTTATTCATGGAAGGTGGGCAATGGCTGCAGTTCTAGGCATCTTTGTTGGTCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCATTCTCCTTTGGTACTCTTCTAGGCACTCAGTTGATTCTCATGGGGTGGGTAGAGAGCAAGAGATGGGTCGATTTCTTCAACCCGGATTCACAGTCAATCGAATGGGCCACTCCATGGTCAAAAACCGCCGAGAACTTTGCTAATGCAACCGGAGAACAAGGCTACCCAGGGGGAAAATTCTTCGACCCATTGTCCCTTGCTGGTACCATCGAAAACGGAGTTTACATTCCAGATACAGAGAAGCTAGAGAGATTGAAACTGGCTGAGATTAAGCATGCTAGGCTTGCTATGTTGGCTATGCTGATTTTCTACTTTGAAGCTGGACAAGGGAAGACTCCCCTTGGTGCTCTTGGCTTGTAA

Protein sequence

>Msa0310270

MAAATSGAVLNGLGSSFLSGGKRSQTLLATTAIGAKGGVAAGSPKRLIVAAAASAPKKSWIPGVRFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSIEWATPWSKTAENFANATGEQGYPGGKFFDPLSLAGTIENGVYIPDTEKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL*