AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532870 MtrunA17_Chr4g0006181 98.962 289 3 0 1 289 59 347 0.0 589
Msa0532870 MtrunA17_Chr3g0113311 70.943 265 73 1 12 272 11 275 1.33e-134 382
Msa0532870 MtrunA17_Chr6g0462031 40.000 230 90 5 57 282 49 234 1.83e-44 151
Msa0532870 MtrunA17_Chr2g0301081 34.615 260 92 7 53 288 61 266 1.08e-38 137
Msa0532870 MtrunA17_Chr8g0345631 33.205 259 95 5 53 287 62 266 7.08e-35 127
Msa0532870 MtrunA17_Chr3g0133901 30.795 302 131 5 13 289 17 265 7.61e-35 127
Msa0532870 MtrunA17_Chr6g0476641 33.452 281 116 10 35 289 47 282 1.51e-34 126
Msa0532870 MtrunA17_Chr3g0092091 30.671 313 132 8 1 289 1 252 1.91e-31 117
Msa0532870 MtrunA17_Chr6g0453181 33.446 296 136 10 3 281 2 253 4.56e-31 117
Msa0532870 MtrunA17_Chr4g0051941 34.228 298 132 11 3 281 2 254 1.17e-30 115
Msa0532870 MtrunA17_Chr6g0453141 33.670 297 134 11 3 281 2 253 8.82e-30 113
Msa0532870 MtrunA17_Chr6g0453151 33.670 297 134 11 3 281 69 320 1.82e-29 114
Msa0532870 MtrunA17_Chr6g0453161 32.770 296 138 10 3 281 269 520 2.08e-29 116
Msa0532870 MtrunA17_Chr6g0453161 43.293 164 78 7 132 281 93 255 3.56e-27 110
Msa0532870 MtrunA17_Chr2g0318521 35.622 233 92 7 61 278 60 249 2.81e-29 112
Msa0532870 MtrunA17_Chr1g0157481 31.111 315 139 12 5 288 62 329 4.62e-29 113
Msa0532870 MtrunA17_Chr2g0279001 31.818 308 115 9 4 268 2 257 9.62e-29 110
Msa0532870 MtrunA17_Chr5g0447531 32.836 268 109 11 35 278 30 250 1.54e-26 104
Msa0532870 MtrunA17_Chr5g0448421 29.710 276 122 7 39 286 43 274 1.46e-25 102
Msa0532870 MtrunA17_Chr5g0448411 30.000 280 121 7 35 286 40 272 2.12e-25 102
Msa0532870 MtrunA17_Chr6g0464511 46.018 113 54 4 175 281 89 200 5.14e-20 86.3
Msa0532870 MtrunA17_Chr6g0453171 56.716 67 28 1 215 281 21 86 1.58e-18 79.0
Msa0532870 MtrunA17_Chr2g0296081 50.000 72 31 2 216 287 36 102 4.64e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532870 AT3G08940.2 87.004 277 33 2 14 289 13 287 5.61e-178 492
Msa0532870 AT5G01530.1 87.726 277 33 1 14 289 14 290 2.51e-174 483
Msa0532870 AT2G40100.1 70.189 265 74 2 12 272 10 273 2.43e-132 376
Msa0532870 AT3G08940.1 77.326 172 36 2 15 185 14 183 9.55e-90 266
Msa0532870 AT2G40100.2 64.024 164 55 1 12 171 10 173 6.53e-71 217
Msa0532870 AT3G54890.1 41.453 234 87 6 57 285 48 236 4.89e-47 158
Msa0532870 AT1G19150.1 33.846 260 94 6 53 288 64 269 4.69e-35 127
Msa0532870 AT4G10340.1 35.573 253 102 8 53 289 66 273 9.03e-35 127
Msa0532870 AT3G61470.1 33.977 259 93 6 53 287 51 255 1.16e-34 126
Msa0532870 AT1G45474.2 32.830 265 99 5 51 289 43 254 2.00e-34 125
Msa0532870 AT1G45474.1 32.830 265 99 5 51 289 43 254 2.00e-34 125
Msa0532870 AT2G34420.1 34.333 300 128 11 3 281 2 253 7.96e-33 122
Msa0532870 AT1G29930.1 34.437 302 127 12 3 281 2 255 1.50e-32 121
Msa0532870 AT1G29920.1 34.437 302 127 12 3 281 2 255 3.20e-32 120
Msa0532870 AT1G29910.1 34.437 302 127 12 3 281 2 255 3.20e-32 120
Msa0532870 AT3G47470.1 30.645 310 129 8 4 287 2 251 6.40e-32 119
Msa0532870 AT1G76570.1 33.981 309 127 12 5 283 61 322 1.41e-31 120
Msa0532870 AT3G54890.4 37.629 194 72 5 57 246 48 196 1.67e-30 114
Msa0532870 AT5G54270.1 33.696 276 108 8 35 278 18 250 1.97e-30 115
Msa0532870 AT2G34430.1 44.785 163 74 6 134 281 93 254 6.11e-30 114
Msa0532870 AT1G15820.1 33.704 270 75 9 40 268 48 254 4.42e-29 111
Msa0532870 AT1G61520.3 30.435 276 119 7 39 286 40 270 6.15e-28 109
Msa0532870 AT1G61520.1 30.435 276 119 7 39 286 40 270 6.15e-28 109
Msa0532870 AT2G05070.1 33.446 296 124 13 7 278 4 250 1.33e-27 108
Msa0532870 AT2G05100.1 33.681 288 102 13 19 278 24 250 5.75e-27 106
Msa0532870 AT3G27690.2 33.110 299 130 13 3 278 32 283 2.59e-26 105
Msa0532870 AT3G27690.1 33.220 295 127 13 7 278 4 251 7.20e-26 103
Msa0532870 AT1G61520.2 29.388 245 102 6 70 286 14 215 2.05e-20 87.8
Msa0532870 AT2G05100.2 32.364 275 97 13 19 265 24 237 8.73e-20 87.8
Msa0532870 AT5G28450.1 45.783 83 44 1 206 287 89 171 6.17e-14 68.9

Find 117 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATTGAAGTTCTAGTAAT+TGG 0.183569 4_1:-7448317 Msa0532870:CDS
AACTTGTTACCCAAACAAAA+TGG 0.198408 4_1:-7447553 Msa0532870:three_prime_UTR
CTTGATCTCGATGGTTTCTT+TGG 0.211241 4_1:+7450132 None:intergenic
TGACTCGCTTGATCAGAATT+TGG 0.225880 4_1:-7449753 Msa0532870:CDS
TGGTGATGAATTGGTGATTA+TGG 0.278938 4_1:+7450379 None:intergenic
GGAAGTTTGGTCGGAGATTA+CGG 0.284629 4_1:-7449827 Msa0532870:CDS
GGATTTGATCCATTCGGTTT+GGG 0.286594 4_1:-7449806 Msa0532870:CDS
GGCTGCAGCGGTGGCGGTTG+CGG 0.291908 4_1:+7450248 None:intergenic
CTATATATATAAATGCTATT+TGG 0.296999 4_1:-7447990 Msa0532870:three_prime_UTR
GTGAAATTCCTAATGTGAAT+TGG 0.346762 4_1:-7447927 Msa0532870:three_prime_UTR
ACCTCACTGTAAGGCTGAAA+TGG 0.350160 4_1:+7449668 None:intergenic
TGGTGATTATGGATAATCTT+TGG 0.353186 4_1:+7450390 None:intergenic
CTTGCTATGGTTGCTTTCCT+TGG 0.358398 4_1:-7448152 Msa0532870:CDS
CGGATTTGATCCATTCGGTT+TGG 0.362578 4_1:-7449807 Msa0532870:CDS
GTAAAGGACCACTTAACAAT+TGG 0.364076 4_1:-7448103 Msa0532870:CDS
CACTCCGGTGACTTTGCTCC+GGG 0.367189 4_1:+7449857 None:intergenic
GGCTTGGATCCTACCCGAAT+TGG 0.370873 4_1:+7450185 None:intergenic
AAACATTAGGTCGAAGTGTT+GGG 0.372334 4_1:-7447525 Msa0532870:three_prime_UTR
TTCCGAAGCCAAATCGGGCT+TGG 0.372431 4_1:+7450169 None:intergenic
CATCAAGTTCTGCATTTCTC+TGG 0.373438 4_1:+7448282 None:intergenic
TTTCAGGTTGAGCTAGTAGA+AGG 0.373969 4_1:-7448389 Msa0532870:intron
TGAGGGCAATGAGGAACATT+AGG 0.375399 4_1:-7447834 Msa0532870:three_prime_UTR
TCTTCTTTCCGAAGCCAAAT+CGG 0.378319 4_1:+7450163 None:intergenic
TAACTGCTCCAATTCACATT+AGG 0.378682 4_1:+7447919 None:intergenic
TTTGCTCCGGGGTACCATAA+TGG 0.383572 4_1:+7449869 None:intergenic
GTTCTTGATTAACTCATGTA+TGG 0.384423 4_1:-7448021 Msa0532870:three_prime_UTR
CCGCAAAGTTCAATCCAATT+CGG 0.385734 4_1:-7450199 Msa0532870:CDS
GTGAGTTGATTCATGGTAGA+TGG 0.391291 4_1:-7449619 Msa0532870:CDS
CGCAAAGTTCAATCCAATTC+GGG 0.395540 4_1:-7450198 Msa0532870:CDS
GGTAGGATCCAAGCCCGATT+TGG 0.398525 4_1:-7450177 Msa0532870:CDS
AGGGAATGTGAGTTGATTCA+TGG 0.400554 4_1:-7449626 Msa0532870:CDS
TTGATGTGGTGGTGATGAAT+TGG 0.401399 4_1:+7450370 None:intergenic
AAAGAAAGCAACACTTCAAT+TGG 0.404848 4_1:-7448195 Msa0532870:CDS
TCTCAATCACAACACTAATC+TGG 0.407508 4_1:-7448337 Msa0532870:CDS
CTTCTTTCCGAAGCCAAATC+GGG 0.408293 4_1:+7450164 None:intergenic
ATTATGGATAATCTTTGGTT+TGG 0.423165 4_1:+7450395 None:intergenic
ATCCAAGCCCGATTTGGCTT+CGG 0.425991 4_1:-7450171 Msa0532870:CDS
GCTGTTCAAGCTGCTGCTAC+TGG 0.427306 4_1:-7448125 Msa0532870:CDS
AATTTGGCGAAGAATCTTGC+TGG 0.430119 4_1:-7449737 Msa0532870:CDS
GTAGAAGGATCAACATATCT+TGG 0.431470 4_1:-7448374 Msa0532870:CDS
CCACTCCGGTGACTTTGCTC+CGG 0.432695 4_1:+7449856 None:intergenic
TGGGCTATGCTTGCTACTCT+TGG 0.438475 4_1:-7449599 Msa0532870:CDS
ACTTGTTACCCAAACAAAAT+GGG 0.439094 4_1:-7447552 Msa0532870:three_prime_UTR
TTGGTGCTCTTACTGTTGAA+TGG 0.443652 4_1:-7449580 Msa0532870:CDS
GGAGTGGCTAGACGGAAGTT+TGG 0.446982 4_1:-7449840 Msa0532870:CDS
CAAGCTGCTGCTACTGGTAA+AGG 0.448841 4_1:-7448119 Msa0532870:CDS
TGGATTGAACTTTGCGGAGG+CGG 0.449745 4_1:+7450205 None:intergenic
CCGAATTGGATTGAACTTTG+CGG 0.453525 4_1:+7450199 None:intergenic
ATCAATAAGATGAGAAAAGG+AGG 0.455039 4_1:-7447667 Msa0532870:three_prime_UTR
GGAAAATTCTTTGACCCACT+TGG 0.458494 4_1:-7448236 Msa0532870:CDS
ATTAGTGTTGTGATTGAGAA+TGG 0.460015 4_1:+7448341 None:intergenic
TTGACTAAGCATGAAATTTG+AGG 0.467015 4_1:-7447852 Msa0532870:three_prime_UTR
CTGGAGATGTGATCGGAACT+AGG 0.468188 4_1:-7449718 Msa0532870:CDS
CAGGTACTGATCGTCCATTA+TGG 0.471652 4_1:-7449883 Msa0532870:CDS
ATATAAATGCTATTTGGCAT+TGG 0.474581 4_1:-7447984 Msa0532870:three_prime_UTR
GAAATCAATAAGATGAGAAA+AGG 0.479724 4_1:-7447670 Msa0532870:three_prime_UTR
CTTACTGTTGAATGGCTCAC+TGG 0.480818 4_1:-7449572 Msa0532870:CDS
TAAACATTAGGTCGAAGTGT+TGG 0.482430 4_1:-7447526 Msa0532870:three_prime_UTR
GGAAGAAAAGGTATCAATGA+TGG 0.486648 4_1:+7448049 None:intergenic
TGCAGCGGTGGCGGTTGCGG+CGG 0.492945 4_1:+7450251 None:intergenic
AAGGCGCGCGAGAAACTCAT+AGG 0.494800 4_1:+7447795 None:intergenic
GGATTGAACTTTGCGGAGGC+GGG 0.495332 4_1:+7450206 None:intergenic
TGACTAAGCATGAAATTTGA+GGG 0.498032 4_1:-7447851 Msa0532870:three_prime_UTR
CAAGAACTAAGAGGAAGAAA+AGG 0.500205 4_1:+7448037 None:intergenic
TTATATAATCTGAACTGCAT+AGG 0.505707 4_1:-7447701 Msa0532870:three_prime_UTR
TCACATTAGCACAAATCAAA+TGG 0.513274 4_1:-7450274 Msa0532870:exon
TAGTGTTGTATTTGATGTGG+TGG 0.521205 4_1:+7450359 None:intergenic
TATATAATCTGAACTGCATA+GGG 0.522892 4_1:-7447700 Msa0532870:three_prime_UTR
GATTACGGATTTGATCCATT+CGG 0.525387 4_1:-7449812 Msa0532870:CDS
TAAAGGACCACTTAACAATT+GGG 0.525889 4_1:-7448102 Msa0532870:CDS
GGTGTTACATGGCAAGATGC+TGG 0.526008 4_1:-7449551 Msa0532870:CDS
TCAAATTGCAAATACTCCGC+TGG 0.530448 4_1:+7449779 None:intergenic
TGAAGTGGCTGCAGCGGTGG+CGG 0.531682 4_1:+7450242 None:intergenic
TGAGTAGCCCAATTGTTAAG+TGG 0.534802 4_1:+7448095 None:intergenic
TGAGTTAATCAAGAACTAAG+AGG 0.538848 4_1:+7448028 None:intergenic
CAAACATGCTCGTCTTGCTA+TGG 0.544135 4_1:-7448165 Msa0532870:CDS
AAGATGAGAAAAGGAGGAGT+CGG 0.555539 4_1:-7447661 Msa0532870:three_prime_UTR
AACATTAGGTCGAAGTGTTG+GGG 0.556714 4_1:-7447524 Msa0532870:three_prime_UTR
GTTGTGATTGAGAATGGAAG+TGG 0.559057 4_1:+7448347 None:intergenic
TGGCTAGACGGAAGTTTGGT+CGG 0.562317 4_1:-7449836 Msa0532870:CDS
GATTTGATCCATTCGGTTTG+GGG 0.569199 4_1:-7449805 Msa0532870:CDS
TGATAGTGTTGTATTTGATG+TGG 0.569485 4_1:+7450356 None:intergenic
AATGGCTCACTGGTGTTACA+TGG 0.578720 4_1:-7449562 Msa0532870:CDS
TGATGAAGTGGCTGCAGCGG+TGG 0.581298 4_1:+7450239 None:intergenic
AATCTTGCTGGAGATGTGAT+CGG 0.592039 4_1:-7449725 Msa0532870:CDS
GCTGGTTTCCCCAAACCGAA+TGG 0.594130 4_1:+7449797 None:intergenic
TGTGAGCAAGGTGGTGAGAG+TGG 0.597681 4_1:+7450292 None:intergenic
TGAGTTGATTCATGGTAGAT+GGG 0.603160 4_1:-7449618 Msa0532870:CDS
AGACTCCACAATGTTAGAGA+TGG 0.603901 4_1:+7447585 None:intergenic
CATGAAATTTGAGGGCAATG+AGG 0.607187 4_1:-7447843 Msa0532870:three_prime_UTR
AAGTCACCGGAGTGGCTAGA+CGG 0.609847 4_1:-7449848 Msa0532870:CDS
GCAGCCACTTCATCATTCAT+CGG 0.611200 4_1:-7450231 Msa0532870:CDS
ATTCGGTTTGGGGAAACCAG+CGG 0.612852 4_1:-7449795 Msa0532870:CDS
TCTCGATGGTTTCTTTGGTG+CGG 0.615685 4_1:+7450137 None:intergenic
AAACTTCCGTCTAGCCACTC+CGG 0.616068 4_1:+7449842 None:intergenic
AGATGTGATCGGAACTAGGA+CGG 0.619077 4_1:-7449714 Msa0532870:CDS
GTACCCCGGAGCAAAGTCAC+CGG 0.620014 4_1:-7449861 Msa0532870:CDS
TCATGCCATCTCTAACATTG+TGG 0.626113 4_1:-7447590 Msa0532870:three_prime_UTR
TCAATGATGGTAGTGTGAAG+AGG 0.631393 4_1:+7448062 None:intergenic
GGTCAGATGCTAAGCCAAGT+GGG 0.631916 4_1:+7448222 None:intergenic
GCATTGGTTTGTAAACATTG+TGG 0.633055 4_1:-7447968 Msa0532870:three_prime_UTR
GGGTCAGATGCTAAGCCAAG+TGG 0.635931 4_1:+7448221 None:intergenic
CAGCTTGAACAGCAAAACCA+AGG 0.638361 4_1:+7448135 None:intergenic
GATTTGTGCTAATGTGAGCA+AGG 0.641179 4_1:+7450280 None:intergenic
TCCATTTCAGCCTTACAGTG+AGG 0.647585 4_1:-7449669 Msa0532870:CDS
AATTGGATTGAACTTTGCGG+AGG 0.651218 4_1:+7450202 None:intergenic
GAATGATGAAGTGGCTGCAG+CGG 0.651301 4_1:+7450236 None:intergenic
AAGTTCAATCCAATTCGGGT+AGG 0.658067 4_1:-7450194 Msa0532870:CDS
GGTGCCGATGAATGATGAAG+TGG 0.658626 4_1:+7450227 None:intergenic
TACATGGCAAGATGCTGGAA+AGG 0.662185 4_1:-7449546 Msa0532870:intron
GTACTGGGACTTGATCTCGA+TGG 0.663909 4_1:+7450123 None:intergenic
GATCGTCCATTATGGTACCC+CGG 0.673771 4_1:-7449875 Msa0532870:CDS
CCGGAGCAAAGTCACCGGAG+TGG 0.687601 4_1:-7449856 Msa0532870:CDS
ACTCCGGTGACTTTGCTCCG+GGG 0.699763 4_1:+7449858 None:intergenic
GAAAAGAGACTATACCCAGG+TGG 0.723166 4_1:-7448257 Msa0532870:CDS
GCAGAAAAGAGACTATACCC+AGG 0.746677 4_1:-7448260 Msa0532870:CDS
TTGTGCTAATGTGAGCAAGG+TGG 0.794434 4_1:+7450283 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGAATTTTTTTTTTTGT+AGG + chr4_1:7448712-7448731 None:intergenic 10.0%
!!! GTCTTTAAAATTATTAAATA+AGG + chr4_1:7448840-7448859 None:intergenic 10.0%
!! ATTATAATTTGAAAGAATAT+AGG - chr4_1:7448944-7448963 Msa0532870:intron 10.0%
!!! TTTTTCTTTTTACATTATAT+TGG - chr4_1:7449056-7449075 Msa0532870:intron 10.0%
!!! TTCAATAAATTATGAAATTT+TGG - chr4_1:7449457-7449476 Msa0532870:intron 10.0%
!! AATCTTTAATTATATCTAAC+AGG - chr4_1:7447974-7447993 Msa0532870:three_prime_UTR 15.0%
!!! AAATTTTGGTATAATTTTTC+AGG - chr4_1:7449471-7449490 Msa0532870:intron 15.0%
!! CTATATATATAAATGCTATT+TGG - chr4_1:7449886-7449905 Msa0532870:intron 15.0%
!! TTAATTATATCTAACGTACT+GGG + chr4_1:7447771-7447790 None:intergenic 20.0%
!! TTTAATTATATCTAACGTAC+TGG + chr4_1:7447772-7447791 None:intergenic 20.0%
!! AATAAGGTCACAAATATTAT+TGG + chr4_1:7448824-7448843 None:intergenic 20.0%
!!! CAAATTATAATTTGTATGCA+CGG + chr4_1:7448935-7448954 None:intergenic 20.0%
!!! TTGAAAGAATATAGGTTTTA+TGG - chr4_1:7448952-7448971 Msa0532870:intron 20.0%
!! TATGATAACACACTAATATT+GGG + chr4_1:7449112-7449131 None:intergenic 20.0%
!! CACATTTCTATTATCATATA+AGG - chr4_1:7449133-7449152 Msa0532870:intron 20.0%
!!! TCTAATTTGAATTTTCTCTA+AGG + chr4_1:7449407-7449426 None:intergenic 20.0%
!!! TTAATTTTTTTTTCTTCTGC+TGG - chr4_1:7449983-7450002 Msa0532870:intron 20.0%
!!! TAATTTTTTTTTCTTCTGCT+GGG - chr4_1:7449984-7450003 Msa0532870:intron 20.0%
! ATTATGGATAATCTTTGGTT+TGG + chr4_1:7447484-7447503 None:intergenic 25.0%
!! GTTTGTGAGTTTTTGAATTT+GGG + chr4_1:7447551-7447570 None:intergenic 25.0%
!! TGTTTGTGAGTTTTTGAATT+TGG + chr4_1:7447552-7447571 None:intergenic 25.0%
!!! AGTTATAACTAGTTGATAGT+TGG - chr4_1:7447846-7447865 Msa0532870:three_prime_UTR 25.0%
!!! TCTTTAGTTCATGTTTGTTT+TGG - chr4_1:7448617-7448636 Msa0532870:intron 25.0%
!! TTTTTGACAGAATCAAGATA+TGG + chr4_1:7448990-7449009 None:intergenic 25.0%
! AATCAAAATGCTTCAAGATA+TGG + chr4_1:7449029-7449048 None:intergenic 25.0%
! CTATGATAACACACTAATAT+TGG + chr4_1:7449113-7449132 None:intergenic 25.0%
!! ATATTTTATGGAGAACACAA+TGG + chr4_1:7449345-7449364 None:intergenic 25.0%
!! ATATAAATGCTATTTGGCAT+TGG - chr4_1:7449892-7449911 Msa0532870:intron 25.0%
!!! AATTTTTTTTTCTTCTGCTG+GGG - chr4_1:7449985-7450004 Msa0532870:intron 25.0%
!!! ACATTTCGAATTTTAGAATC+TGG + chr4_1:7450109-7450128 None:intergenic 25.0%
!!! CGAAATGTTTTAACTTGTTT+TGG - chr4_1:7450121-7450140 Msa0532870:intron 25.0%
!!! AATGTTTTAACTTGTTTTGG+AGG - chr4_1:7450124-7450143 Msa0532870:intron 25.0%
! TTATATAATCTGAACTGCAT+AGG - chr4_1:7450175-7450194 Msa0532870:CDS 25.0%
! TATATAATCTGAACTGCATA+GGG - chr4_1:7450176-7450195 Msa0532870:CDS 25.0%
! GAAATCAATAAGATGAGAAA+AGG - chr4_1:7450206-7450225 Msa0532870:CDS 25.0%
!!! GTTTAAAACCCATTTTGTTT+GGG + chr4_1:7450335-7450354 None:intergenic 25.0%
!!! TGTTTAAAACCCATTTTGTT+TGG + chr4_1:7450336-7450355 None:intergenic 25.0%
!!! CAAAATGGGTTTTAAACATT+AGG - chr4_1:7450338-7450357 Msa0532870:five_prime_UTR 25.0%
TGGTGATTATGGATAATCTT+TGG + chr4_1:7447489-7447508 None:intergenic 30.0%
! TGATAGTGTTGTATTTGATG+TGG + chr4_1:7447523-7447542 None:intergenic 30.0%
TCACATTAGCACAAATCAAA+TGG - chr4_1:7447602-7447621 Msa0532870:three_prime_UTR 30.0%
GTCTTTAATTCAAAGTGTGT+TGG - chr4_1:7448457-7448476 Msa0532870:intron 30.0%
!!! TTCATGTTTGTTTTGGATAG+AGG - chr4_1:7448624-7448643 Msa0532870:intron 30.0%
TAGTTTCTCACAATGTTTAC+AGG - chr4_1:7448731-7448750 Msa0532870:intron 30.0%
TTGGTACAGAACAAAAAAGA+AGG - chr4_1:7449075-7449094 Msa0532870:intron 30.0%
GTAACTATATGTATCGTTGT+CGG - chr4_1:7449256-7449275 Msa0532870:intron 30.0%
TGTGTTCTCCATAAAATATG+AGG - chr4_1:7449346-7449365 Msa0532870:intron 30.0%
! AGCAAGATCCTCATATTTTA+TGG + chr4_1:7449357-7449376 None:intergenic 30.0%
ATTAGTGTTGTGATTGAGAA+TGG + chr4_1:7449538-7449557 None:intergenic 30.0%
! TGGATTGAAGTTCTAGTAAT+TGG - chr4_1:7449559-7449578 Msa0532870:CDS 30.0%
AAAGAAAGCAACACTTCAAT+TGG - chr4_1:7449681-7449700 Msa0532870:CDS 30.0%
TAAAGGACCACTTAACAATT+GGG - chr4_1:7449774-7449793 Msa0532870:CDS 30.0%
TGAGTTAATCAAGAACTAAG+AGG + chr4_1:7449851-7449870 None:intergenic 30.0%
GTTCTTGATTAACTCATGTA+TGG - chr4_1:7449855-7449874 Msa0532870:CDS 30.0%
GTGAAATTCCTAATGTGAAT+TGG - chr4_1:7449949-7449968 Msa0532870:intron 30.0%
TTGACTAAGCATGAAATTTG+AGG - chr4_1:7450024-7450043 Msa0532870:intron 30.0%
TGACTAAGCATGAAATTTGA+GGG - chr4_1:7450025-7450044 Msa0532870:intron 30.0%
!!! CGAATTTTAGAATCTGGATA+AGG + chr4_1:7450103-7450122 None:intergenic 30.0%
!!! ACTTGTTTTGGAGGTTTTTA+TGG - chr4_1:7450133-7450152 Msa0532870:CDS 30.0%
!!! CTTGTTTTGGAGGTTTTTAT+GGG - chr4_1:7450134-7450153 Msa0532870:CDS 30.0%
ATCAATAAGATGAGAAAAGG+AGG - chr4_1:7450209-7450228 Msa0532870:CDS 30.0%
!! AACTTGTTACCCAAACAAAA+TGG - chr4_1:7450323-7450342 Msa0532870:five_prime_UTR 30.0%
! ACTTGTTACCCAAACAAAAT+GGG - chr4_1:7450324-7450343 Msa0532870:five_prime_UTR 30.0%
! TGGTGATGAATTGGTGATTA+TGG + chr4_1:7447500-7447519 None:intergenic 35.0%
TAGTGTTGTATTTGATGTGG+TGG + chr4_1:7447520-7447539 None:intergenic 35.0%
GATTACGGATTTGATCCATT+CGG - chr4_1:7448064-7448083 Msa0532870:CDS 35.0%
! TTTTTGGACTTCAGAGGTTT+AGG - chr4_1:7448230-7448249 Msa0532870:CDS 35.0%
! TTTTGGACTTCAGAGGTTTA+GGG - chr4_1:7448231-7448250 Msa0532870:CDS 35.0%
!! TGAGTTGATTCATGGTAGAT+GGG - chr4_1:7448258-7448277 Msa0532870:CDS 35.0%
ATGAACCACGGATATAGATA+CGG - chr4_1:7449164-7449183 Msa0532870:intron 35.0%
ACGGATATAGATACGGATAT+CGG - chr4_1:7449171-7449190 Msa0532870:intron 35.0%
TATGAAGCACAGATACTCTT+CGG + chr4_1:7449317-7449336 None:intergenic 35.0%
!! AAGAGTATCTGTGCTTCATA+GGG - chr4_1:7449317-7449336 Msa0532870:intron 35.0%
GTAGAAGGATCAACATATCT+TGG - chr4_1:7449502-7449521 Msa0532870:intron 35.0%
TCTCAATCACAACACTAATC+TGG - chr4_1:7449539-7449558 Msa0532870:intron 35.0%
!!! GAAGTGTTGCTTTCTTTTCT+GGG + chr4_1:7449678-7449697 None:intergenic 35.0%
!!! TGAAGTGTTGCTTTCTTTTC+TGG + chr4_1:7449679-7449698 None:intergenic 35.0%
GTAAAGGACCACTTAACAAT+TGG - chr4_1:7449773-7449792 Msa0532870:CDS 35.0%
!! GGAAGAAAAGGTATCAATGA+TGG + chr4_1:7449830-7449849 None:intergenic 35.0%
CAAGAACTAAGAGGAAGAAA+AGG + chr4_1:7449842-7449861 None:intergenic 35.0%
!! GCATTGGTTTGTAAACATTG+TGG - chr4_1:7449908-7449927 Msa0532870:intron 35.0%
TAACTGCTCCAATTCACATT+AGG + chr4_1:7449960-7449979 None:intergenic 35.0%
TAAACATTAGGTCGAAGTGT+TGG - chr4_1:7450350-7450369 Msa0532870:five_prime_UTR 35.0%
! AAACATTAGGTCGAAGTGTT+GGG - chr4_1:7450351-7450370 Msa0532870:five_prime_UTR 35.0%
! TTGATGTGGTGGTGATGAAT+TGG + chr4_1:7447509-7447528 None:intergenic 40.0%
GATTTGTGCTAATGTGAGCA+AGG + chr4_1:7447599-7447618 None:intergenic 40.0%
AATTGGATTGAACTTTGCGG+AGG + chr4_1:7447677-7447696 None:intergenic 40.0%
CCGAATTGGATTGAACTTTG+CGG + chr4_1:7447680-7447699 None:intergenic 40.0%
CCGCAAAGTTCAATCCAATT+CGG - chr4_1:7447677-7447696 Msa0532870:three_prime_UTR 40.0%
CGCAAAGTTCAATCCAATTC+GGG - chr4_1:7447678-7447697 Msa0532870:three_prime_UTR 40.0%
AAGTTCAATCCAATTCGGGT+AGG - chr4_1:7447682-7447701 Msa0532870:three_prime_UTR 40.0%
TCTTCTTTCCGAAGCCAAAT+CGG + chr4_1:7447716-7447735 None:intergenic 40.0%
CTTGATCTCGATGGTTTCTT+TGG + chr4_1:7447747-7447766 None:intergenic 40.0%
GGATTTGATCCATTCGGTTT+GGG - chr4_1:7448070-7448089 Msa0532870:CDS 40.0%
! GATTTGATCCATTCGGTTTG+GGG - chr4_1:7448071-7448090 Msa0532870:CDS 40.0%
TCAAATTGCAAATACTCCGC+TGG + chr4_1:7448100-7448119 None:intergenic 40.0%
TGACTCGCTTGATCAGAATT+TGG - chr4_1:7448123-7448142 Msa0532870:CDS 40.0%
AATTTGGCGAAGAATCTTGC+TGG - chr4_1:7448139-7448158 Msa0532870:CDS 40.0%
AATCTTGCTGGAGATGTGAT+CGG - chr4_1:7448151-7448170 Msa0532870:CDS 40.0%
AGTCCAAAAACCTCACTGTA+AGG + chr4_1:7448220-7448239 None:intergenic 40.0%
!! AGGGAATGTGAGTTGATTCA+TGG - chr4_1:7448250-7448269 Msa0532870:CDS 40.0%
!! GTGAGTTGATTCATGGTAGA+TGG - chr4_1:7448257-7448276 Msa0532870:CDS 40.0%
! TTGGTGCTCTTACTGTTGAA+TGG - chr4_1:7448296-7448315 Msa0532870:CDS 40.0%
! AAGGTACCATCTATGAACCA+CGG - chr4_1:7449152-7449171 Msa0532870:intron 40.0%
CTATATCCGTGGTTCATAGA+TGG + chr4_1:7449161-7449180 None:intergenic 40.0%
GATATCCGTATCTATATCCG+TGG + chr4_1:7449172-7449191 None:intergenic 40.0%
ATAGATACGGATATCGGACA+TGG - chr4_1:7449177-7449196 Msa0532870:intron 40.0%
!! GAAGAGTATCTGTGCTTCAT+AGG - chr4_1:7449316-7449335 Msa0532870:intron 40.0%
!! TTTCAGGTTGAGCTAGTAGA+AGG - chr4_1:7449487-7449506 Msa0532870:intron 40.0%
GTTGTGATTGAGAATGGAAG+TGG + chr4_1:7449532-7449551 None:intergenic 40.0%
CATCAAGTTCTGCATTTCTC+TGG + chr4_1:7449597-7449616 None:intergenic 40.0%
! GGTCAAAGAATTTTCCACCT+GGG + chr4_1:7449636-7449655 None:intergenic 40.0%
GGAAAATTCTTTGACCCACT+TGG - chr4_1:7449640-7449659 Msa0532870:CDS 40.0%
TGAGTAGCCCAATTGTTAAG+TGG + chr4_1:7449784-7449803 None:intergenic 40.0%
! TCAATGATGGTAGTGTGAAG+AGG + chr4_1:7449817-7449836 None:intergenic 40.0%
CATGAAATTTGAGGGCAATG+AGG - chr4_1:7450033-7450052 Msa0532870:intron 40.0%
AAGATGAGAAAAGGAGGAGT+CGG - chr4_1:7450215-7450234 Msa0532870:CDS 40.0%
TCATGCCATCTCTAACATTG+TGG - chr4_1:7450286-7450305 Msa0532870:five_prime_UTR 40.0%
AGACTCCACAATGTTAGAGA+TGG + chr4_1:7450294-7450313 None:intergenic 40.0%
!! AACATTAGGTCGAAGTGTTG+GGG - chr4_1:7450352-7450371 Msa0532870:five_prime_UTR 40.0%
TTGTGCTAATGTGAGCAAGG+TGG + chr4_1:7447596-7447615 None:intergenic 45.0%
GCAGCCACTTCATCATTCAT+CGG - chr4_1:7447645-7447664 Msa0532870:three_prime_UTR 45.0%
CTTCTTTCCGAAGCCAAATC+GGG + chr4_1:7447715-7447734 None:intergenic 45.0%
TCTCGATGGTTTCTTTGGTG+CGG + chr4_1:7447742-7447761 None:intergenic 45.0%
!! CAGGTACTGATCGTCCATTA+TGG - chr4_1:7447993-7448012 Msa0532870:three_prime_UTR 45.0%
GGAAGTTTGGTCGGAGATTA+CGG - chr4_1:7448049-7448068 Msa0532870:CDS 45.0%
CGGATTTGATCCATTCGGTT+TGG - chr4_1:7448069-7448088 Msa0532870:CDS 45.0%
AGATGTGATCGGAACTAGGA+CGG - chr4_1:7448162-7448181 Msa0532870:CDS 45.0%
TCCATTTCAGCCTTACAGTG+AGG - chr4_1:7448207-7448226 Msa0532870:CDS 45.0%
ACCTCACTGTAAGGCTGAAA+TGG + chr4_1:7448211-7448230 None:intergenic 45.0%
! CAGCCTTACAGTGAGGTTTT+TGG - chr4_1:7448214-7448233 Msa0532870:CDS 45.0%
!! GTGAGGTTTTTGGACTTCAG+AGG - chr4_1:7448224-7448243 Msa0532870:CDS 45.0%
CTTACTGTTGAATGGCTCAC+TGG - chr4_1:7448304-7448323 Msa0532870:CDS 45.0%
!! AATGGCTCACTGGTGTTACA+TGG - chr4_1:7448314-7448333 Msa0532870:CDS 45.0%
TACATGGCAAGATGCTGGAA+AGG - chr4_1:7448330-7448349 Msa0532870:CDS 45.0%
! AGATGCTGGAAAGGTTGGTT+TGG - chr4_1:7448339-7448358 Msa0532870:CDS 45.0%
GCAGAAAAGAGACTATACCC+AGG - chr4_1:7449616-7449635 Msa0532870:CDS 45.0%
GAAAAGAGACTATACCCAGG+TGG - chr4_1:7449619-7449638 Msa0532870:CDS 45.0%
! GGGTCAAAGAATTTTCCACC+TGG + chr4_1:7449637-7449656 None:intergenic 45.0%
CAAACATGCTCGTCTTGCTA+TGG - chr4_1:7449711-7449730 Msa0532870:CDS 45.0%
! CTTGCTATGGTTGCTTTCCT+TGG - chr4_1:7449724-7449743 Msa0532870:CDS 45.0%
CAGCTTGAACAGCAAAACCA+AGG + chr4_1:7449744-7449763 None:intergenic 45.0%
TGAGGGCAATGAGGAACATT+AGG - chr4_1:7450042-7450061 Msa0532870:intron 45.0%
!!! TGTTTTTTTTTTTTTTTTAA+TGG - chr4_1:7448556-7448575 Msa0532870:intron 5.0%
GAATGATGAAGTGGCTGCAG+CGG + chr4_1:7447643-7447662 None:intergenic 50.0%
!! GGTGCCGATGAATGATGAAG+TGG + chr4_1:7447652-7447671 None:intergenic 50.0%
TGGATTGAACTTTGCGGAGG+CGG + chr4_1:7447674-7447693 None:intergenic 50.0%
!! ATCCAAGCCCGATTTGGCTT+CGG - chr4_1:7447705-7447724 Msa0532870:three_prime_UTR 50.0%
GTACTGGGACTTGATCTCGA+TGG + chr4_1:7447756-7447775 None:intergenic 50.0%
GATCGTCCATTATGGTACCC+CGG - chr4_1:7448001-7448020 Msa0532870:three_prime_UTR 50.0%
! TTTGCTCCGGGGTACCATAA+TGG + chr4_1:7448010-7448029 None:intergenic 50.0%
AAACTTCCGTCTAGCCACTC+CGG + chr4_1:7448037-7448056 None:intergenic 50.0%
TGGCTAGACGGAAGTTTGGT+CGG - chr4_1:7448040-7448059 Msa0532870:exon 50.0%
!! ATTCGGTTTGGGGAAACCAG+CGG - chr4_1:7448081-7448100 Msa0532870:CDS 50.0%
CTGGAGATGTGATCGGAACT+AGG - chr4_1:7448158-7448177 Msa0532870:CDS 50.0%
! TGGGCTATGCTTGCTACTCT+TGG - chr4_1:7448277-7448296 Msa0532870:CDS 50.0%
! GGTGTTACATGGCAAGATGC+TGG - chr4_1:7448325-7448344 Msa0532870:CDS 50.0%
TGGCAAGATGCTGGAAAGGT+TGG - chr4_1:7448334-7448353 Msa0532870:CDS 50.0%
TACGGATATCGGACATGGCA+CGG - chr4_1:7449182-7449201 Msa0532870:intron 50.0%
GATTAGACGTGTCCCAGTGT+CGG + chr4_1:7449295-7449314 None:intergenic 50.0%
GGTCAGATGCTAAGCCAAGT+GGG + chr4_1:7449657-7449676 None:intergenic 50.0%
CAAGCTGCTGCTACTGGTAA+AGG - chr4_1:7449757-7449776 Msa0532870:CDS 50.0%
TGTGAGCAAGGTGGTGAGAG+TGG + chr4_1:7447587-7447606 None:intergenic 55.0%
GGATTGAACTTTGCGGAGGC+GGG + chr4_1:7447673-7447692 None:intergenic 55.0%
GGCTTGGATCCTACCCGAAT+TGG + chr4_1:7447694-7447713 None:intergenic 55.0%
GGTAGGATCCAAGCCCGATT+TGG - chr4_1:7447699-7447718 Msa0532870:three_prime_UTR 55.0%
TTCCGAAGCCAAATCGGGCT+TGG + chr4_1:7447710-7447729 None:intergenic 55.0%
AAGTCACCGGAGTGGCTAGA+CGG - chr4_1:7448028-7448047 Msa0532870:exon 55.0%
GGAGTGGCTAGACGGAAGTT+TGG - chr4_1:7448036-7448055 Msa0532870:exon 55.0%
! GCTGGTTTCCCCAAACCGAA+TGG + chr4_1:7448082-7448101 None:intergenic 55.0%
GGGTCAGATGCTAAGCCAAG+TGG + chr4_1:7449658-7449677 None:intergenic 55.0%
GCTGTTCAAGCTGCTGCTAC+TGG - chr4_1:7449751-7449770 Msa0532870:CDS 55.0%
AAGGCGCGCGAGAAACTCAT+AGG + chr4_1:7450084-7450103 None:intergenic 55.0%
TGATGAAGTGGCTGCAGCGG+TGG + chr4_1:7447640-7447659 None:intergenic 60.0%
GTACCCCGGAGCAAAGTCAC+CGG - chr4_1:7448015-7448034 Msa0532870:three_prime_UTR 60.0%
ACTCCGGTGACTTTGCTCCG+GGG + chr4_1:7448021-7448040 None:intergenic 60.0%
CACTCCGGTGACTTTGCTCC+GGG + chr4_1:7448022-7448041 None:intergenic 60.0%
CCACTCCGGTGACTTTGCTC+CGG + chr4_1:7448023-7448042 None:intergenic 60.0%
CGGACACTGACACGTCGACA+CGG - chr4_1:7449202-7449221 Msa0532870:intron 60.0%
ACACGACACGTGTCCGACAC+TGG - chr4_1:7449279-7449298 Msa0532870:intron 60.0%
CACGACACGTGTCCGACACT+GGG - chr4_1:7449280-7449299 Msa0532870:intron 60.0%
TGAAGTGGCTGCAGCGGTGG+CGG + chr4_1:7447637-7447656 None:intergenic 65.0%
CCGGAGCAAAGTCACCGGAG+TGG - chr4_1:7448020-7448039 Msa0532870:three_prime_UTR 65.0%
! TGCAGCGGTGGCGGTTGCGG+CGG + chr4_1:7447628-7447647 None:intergenic 75.0%
! GGCTGCAGCGGTGGCGGTTG+CGG + chr4_1:7447631-7447650 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 7447475 7450423 7447475 ID=Msa0532870;Name=Msa0532870
chr4_1 mRNA 7447475 7450423 7447475 ID=Msa0532870-mRNA-1;Parent=Msa0532870;Name=Msa0532870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=146|1|1|1|1|1|3|568|289
chr4_1 exon 7447475 7448405 7447475 ID=Msa0532870-mRNA-1:exon:2563;Parent=Msa0532870-mRNA-1
chr4_1 exon 7449547 7449902 7449547 ID=Msa0532870-mRNA-1:exon:2562;Parent=Msa0532870-mRNA-1
chr4_1 exon 7450127 7450423 7450127 ID=Msa0532870-mRNA-1:exon:2561;Parent=Msa0532870-mRNA-1
chr4_1 five_prime_UTR 7450278 7450423 7450278 ID=Msa0532870-mRNA-1:five_prime_utr;Parent=Msa0532870-mRNA-1
chr4_1 CDS 7450127 7450277 7450127 ID=Msa0532870-mRNA-1:cds;Parent=Msa0532870-mRNA-1
chr4_1 CDS 7449547 7449902 7449547 ID=Msa0532870-mRNA-1:cds;Parent=Msa0532870-mRNA-1
chr4_1 CDS 7448043 7448405 7448043 ID=Msa0532870-mRNA-1:cds;Parent=Msa0532870-mRNA-1
chr4_1 three_prime_UTR 7447475 7448042 7447475 ID=Msa0532870-mRNA-1:three_prime_utr;Parent=Msa0532870-mRNA-1
Gene Sequence

>Msa0532870

ATGGCCGCCGCAACCGCCACCGCTGCAGCCACTTCATCATTCATCGGCACCCGCCTCCGCAAAGTTCAATCCAATTCGGGTAGGATCCAAGCCCGATTTGGCTTCGGAAAGAAGAAAGCCGCACCAAAGAAACCATCGAGATCAAGTCCCAGTACTGATCGTCCATTATGGTACCCCGGAGCAAAGTCACCGGAGTGGCTAGACGGAAGTTTGGTCGGAGATTACGGATTTGATCCATTCGGTTTGGGGAAACCAGCGGAGTATTTGCAATTTGATCTTGACTCGCTTGATCAGAATTTGGCGAAGAATCTTGCTGGAGATGTGATCGGAACTAGGACGGAGTTTGCTGATGTGAAATCGACTCCATTTCAGCCTTACAGTGAGGTTTTTGGACTTCAGAGGTTTAGGGAATGTGAGTTGATTCATGGTAGATGGGCTATGCTTGCTACTCTTGGTGCTCTTACTGTTGAATGGCTCACTGGTGTTACATGGCAAGATGCTGGAAAGGTTGAGCTAGTAGAAGGATCAACATATCTTGGACAACCACTTCCATTCTCAATCACAACACTAATCTGGATTGAAGTTCTAGTAATTGGATACATTGAATTCCAGAGAAATGCAGAACTTGATGCAGAAAAGAGACTATACCCAGGTGGAAAATTCTTTGACCCACTTGGCTTAGCATCTGACCCAGAAAAGAAAGCAACACTTCAATTGGCAGAAATCAAACATGCTCGTCTTGCTATGGTTGCTTTCCTTGGTTTTGCTGTTCAAGCTGCTGCTACTGGTAAAGGACCACTTAACAATTGGGCTACTCATTTGAGTGATCCTCTTCACACTACCATCATTGATACCTTTTCTTCCTCTTAG

Protein sequence

>Msa0532870

MAAATATAAATSSFIGTRLRKVQSNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWYPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDAEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS*