AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0167160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167160 MtrunA17_Chr1g0182931 95.270 148 4 1 1 145 1 148 4.40e-97 276
Msa0167160 MtrunA17_Chr7g0262621 66.216 148 35 5 1 144 1 137 1.03e-58 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167160 AT2G20260.1 63.014 146 45 3 5 144 2 144 6.09e-45 144
Msa0167160 AT4G28750.1 57.931 145 51 3 5 144 2 141 9.15e-35 118

Find 86 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGTAAACTTTAAGATTA+TGG 0.127183 1_4:+48955009 None:intergenic
CATTGGCGTAGTTCACTTTC+TGG 0.135317 1_4:+48955225 None:intergenic
GTTAGTTTGGTTGTTTATTT+TGG 0.151055 1_4:+48956355 None:intergenic
CCAATATTGTTGGACTTTAA+AGG 0.153877 1_4:+48956129 None:intergenic
ACATGCCTAATTAGGCATTT+AGG 0.249206 1_4:+48954947 None:intergenic
ATTGGTGGTGGCTTGGGTTT+AGG 0.254441 1_4:+48956009 None:intergenic
GGGGCCAATTGGTGGTGGCT+TGG 0.265521 1_4:+48956002 None:intergenic
ATGTAAGTGCCGTACATTTA+AGG 0.267466 1_4:-48954928 Msa0167160:three_prime_UTR
ATACTCCTAAATGCCTAATT+AGG 0.269615 1_4:-48954952 Msa0167160:three_prime_UTR
GGGCCAATTGGTGGTGGCTT+GGG 0.275299 1_4:+48956003 None:intergenic
CAAGTAAACTTTAAGATTAT+GGG 0.291812 1_4:+48955010 None:intergenic
CGGCACTTACATGCCTAATT+AGG 0.305440 1_4:+48954939 None:intergenic
CAATATTGTTGGACTTTAAA+GGG 0.305571 1_4:+48956130 None:intergenic
GTGGAGGCAGCAGGTGCAGC+CGG 0.318522 1_4:+48956060 None:intergenic
CCTTTAAAGTCCAACAATAT+TGG 0.324065 1_4:-48956129 Msa0167160:CDS
GTGAGTGAAGTGTGTTAGTT+TGG 0.328090 1_4:+48956342 None:intergenic
CTTCTTCTAGACTTGTTGTC+AGG 0.342347 1_4:-48956101 Msa0167160:CDS
CTTACTATCATAAGGATACT+TGG 0.368802 1_4:+48954857 None:intergenic
GTCAATTTCAGTTGGTGCAT+TGG 0.372321 1_4:+48954905 None:intergenic
TTATCCAATGGATTGGGATA+TGG 0.380731 1_4:-48956449 Msa0167160:five_prime_UTR
CTCAACAGGTGAAGATTCTT+AGG 0.381804 1_4:-48955437 Msa0167160:intron
TGTCAATCGTTTCCTCCACT+TGG 0.388848 1_4:+48956409 None:intergenic
GAACCTCTCTTGGGGCCAAT+TGG 0.393160 1_4:+48955991 None:intergenic
CTCTTGGGGCCAATTGGTGG+TGG 0.405813 1_4:+48955997 None:intergenic
CCTTGATGAAGTTGTGTTGT+TGG 0.411874 1_4:+48956170 None:intergenic
TGGCCCCAAGAGAGGTTCTA+AGG 0.412793 1_4:-48955986 Msa0167160:intron
ACGACAGGGTAGCGAGTCTT+GGG 0.413817 1_4:+48955257 None:intergenic
GATAATCTTAATGTGGCAAA+AGG 0.414539 1_4:+48956287 None:intergenic
AATTACCTTAGAACCTCTCT+TGG 0.417720 1_4:+48955981 None:intergenic
CATTTGAACTTACTATCATA+AGG 0.420678 1_4:+48954849 None:intergenic
AGAAGAAGAACCAATATTGT+TGG 0.421736 1_4:+48956119 None:intergenic
TGCAGCCGGGGCAGCCTCAT+CGG 0.425226 1_4:+48956074 None:intergenic
ATCGACAAATAACTATGCTT+TGG 0.426234 1_4:-48955201 Msa0167160:CDS
GGTGGCTTGGGTTTAGGAGT+AGG 0.430314 1_4:+48956015 None:intergenic
CTTCTTATTGTAATCAAATG+AGG 0.430615 1_4:-48954987 Msa0167160:three_prime_UTR
CCTCTCTTGGGGCCAATTGG+TGG 0.430678 1_4:+48955994 None:intergenic
CATCTCATCCTCAGAAACTT+TGG 0.431422 1_4:+48956386 None:intergenic
GACAACATTATCCAATGGAT+TGG 0.434459 1_4:-48956456 Msa0167160:five_prime_UTR
GCTGGAGCAGTGGAGGCAGC+AGG 0.442829 1_4:+48956051 None:intergenic
TTCTGGAATCGAACCACGAC+AGG 0.446735 1_4:+48955242 None:intergenic
ATTACCTTAGAACCTCTCTT+GGG 0.450802 1_4:+48955982 None:intergenic
CACGACAGGGTAGCGAGTCT+TGG 0.452960 1_4:+48955256 None:intergenic
TATTTGTATCATATTCTGTC+TGG 0.459329 1_4:-48955078 Msa0167160:three_prime_UTR
GGCAACCGATGAGGCTGCCC+CGG 0.460044 1_4:-48956079 Msa0167160:CDS
GCTGCCTCCACTGCTCCAGC+TGG 0.461366 1_4:-48956048 Msa0167160:CDS
AAACCCAAGCCACCACCAAT+TGG 0.463084 1_4:-48956006 Msa0167160:CDS
GGAGGCAGCAGGTGCAGCCG+GGG 0.477518 1_4:+48956062 None:intergenic
TTCTTCTAGACTTGTTGTCA+GGG 0.490708 1_4:-48956100 Msa0167160:CDS
ATGGGCAACTGCACAATGAA+TGG 0.491942 1_4:+48955028 None:intergenic
GTAGGAGCAGCATCACCAGC+TGG 0.494338 1_4:+48956033 None:intergenic
TGGAGGCAGCAGGTGCAGCC+GGG 0.495138 1_4:+48956061 None:intergenic
ACAACATTATCCAATGGATT+GGG 0.497348 1_4:-48956455 Msa0167160:five_prime_UTR
GATTAGATTGAGGTATGAGA+GGG 0.497810 1_4:+48956314 None:intergenic
AGCATGGCATCAGCAGCTAC+TGG 0.498675 1_4:-48956219 Msa0167160:CDS
ATCACCAGCTGGAGCAGTGG+AGG 0.508802 1_4:+48956044 None:intergenic
ATTCTTGGTTAGAGTTCGAT+AGG 0.516741 1_4:-48954751 Msa0167160:three_prime_UTR
ATATTGAAGTTACTAGCCTA+AGG 0.519270 1_4:-48955118 Msa0167160:three_prime_UTR
AGCATCACCAGCTGGAGCAG+TGG 0.519718 1_4:+48956041 None:intergenic
TCCTACTGGTACAAAGGCAC+TGG 0.520039 1_4:-48955408 Msa0167160:CDS
GTGCATTGGCCTTAAATGTA+CGG 0.523721 1_4:+48954919 None:intergenic
ATAGTTATTTGTCGATACAT+TGG 0.524557 1_4:+48955208 None:intergenic
TTACTATCATAAGGATACTT+GGG 0.529141 1_4:+48954858 None:intergenic
AGATTAGATTGAGGTATGAG+AGG 0.540515 1_4:+48956313 None:intergenic
TGCACCATATCCCAATCCAT+TGG 0.540763 1_4:+48956445 None:intergenic
TTCTTAGGAAGGAATCCTAC+TGG 0.542855 1_4:-48955422 Msa0167160:CDS
GTCAATCGTTTCCTCCACTT+GGG 0.546716 1_4:+48956410 None:intergenic
TAAGTTCAAATGAGTGACAT+TGG 0.562913 1_4:-48954838 Msa0167160:three_prime_UTR
ACAGGTGAAGATTCTTAGGA+AGG 0.576965 1_4:-48955433 Msa0167160:intron
AAGGAATCCTACTGGTACAA+AGG 0.577304 1_4:-48955414 Msa0167160:CDS
CCACCAATTGGCCCCAAGAG+AGG 0.582857 1_4:-48955994 Msa0167160:CDS
CTTGGTTAGAGTTCGATAGG+AGG 0.590159 1_4:-48954748 Msa0167160:three_prime_UTR
GATTGACACCAAAGTTTCTG+AGG 0.592055 1_4:-48956394 Msa0167160:five_prime_UTR
CAAGACTCGCTACCCTGTCG+TGG 0.613483 1_4:-48955255 Msa0167160:CDS
CCAACAACACAACTTCATCA+AGG 0.613961 1_4:-48956170 Msa0167160:CDS
AAAAGGACAAGATTAGATTG+AGG 0.617552 1_4:+48956304 None:intergenic
AGTCATGGCTAGCAGCAGCA+TGG 0.629935 1_4:-48956235 Msa0167160:exon
GTAGTGACAACATTATCCAA+TGG 0.631259 1_4:-48956461 Msa0167160:five_prime_UTR
TGTTGTCAGGGCAACCGATG+AGG 0.640147 1_4:-48956088 Msa0167160:CDS
CTTTAAAGGGAACATCAACA+TGG 0.644075 1_4:+48956143 None:intergenic
TTACCTTAGAACCTCTCTTG+GGG 0.647944 1_4:+48955983 None:intergenic
CACAAGTGTCATCACCCAAG+TGG 0.648059 1_4:-48956424 Msa0167160:five_prime_UTR
CACAGAAAGAAAGATAGTCA+TGG 0.651778 1_4:-48956250 Msa0167160:exon
AAGTGTCATCACCCAAGTGG+AGG 0.652030 1_4:-48956421 Msa0167160:five_prime_UTR
TCCAGTGCCTTTGTACCAGT+AGG 0.656987 1_4:+48955407 None:intergenic
CGACAGGGTAGCGAGTCTTG+GGG 0.696532 1_4:+48955258 None:intergenic
TCTGGAATCGAACCACGACA+GGG 0.707301 1_4:+48955243 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTAGTTTGAATTTACTTA+TGG - chr1_4:48955312-48955331 Msa0167160:intron 20.0%
!!! AAGATATATTAGAGTGTTTT+TGG - chr1_4:48955428-48955447 Msa0167160:CDS 20.0%
!! ATTATGAGGAAAAAACTTAA+AGG + chr1_4:48955854-48955873 None:intergenic 20.0%
!!! CAAGTAAACTTTAAGATTAT+GGG + chr1_4:48956175-48956194 None:intergenic 20.0%
!!! AAGTTTTCAGTTTCATTTTT+AGG + chr1_4:48956302-48956321 None:intergenic 20.0%
!!! GTTTAGTTTGAATTTACTTA+TGG - chr1_4:48955312-48955331 Msa0167160:intron 20.0%
!!! AAGATATATTAGAGTGTTTT+TGG - chr1_4:48955428-48955447 Msa0167160:CDS 20.0%
!! ATTATGAGGAAAAAACTTAA+AGG + chr1_4:48955854-48955873 None:intergenic 20.0%
!!! CAAGTAAACTTTAAGATTAT+GGG + chr1_4:48956175-48956194 None:intergenic 20.0%
!!! AAGTTTTCAGTTTCATTTTT+AGG + chr1_4:48956302-48956321 None:intergenic 20.0%
!!! GTTAGTTTGGTTGTTTATTT+TGG + chr1_4:48954830-48954849 None:intergenic 25.0%
!!! CTCTTTTGATAATCTTAATG+TGG + chr1_4:48954905-48954924 None:intergenic 25.0%
! CAATATTGTTGGACTTTAAA+GGG + chr1_4:48955055-48955074 None:intergenic 25.0%
! TTCTTGTTGCAATTATACAT+TGG - chr1_4:48955290-48955309 Msa0167160:intron 25.0%
!!! AAGTGAGTTTTAGTTGAAAT+AGG + chr1_4:48955472-48955491 None:intergenic 25.0%
! TATTTCAACTAAAACTCACT+TGG - chr1_4:48955471-48955490 Msa0167160:intron 25.0%
! ATTTCAACTAAAACTCACTT+GGG - chr1_4:48955472-48955491 Msa0167160:intron 25.0%
! TAGCTAAAGATAGTTGAAAT+AGG + chr1_4:48955612-48955631 None:intergenic 25.0%
! ATAGTTATTTGTCGATACAT+TGG + chr1_4:48955977-48955996 None:intergenic 25.0%
!! TTTTGACATGAAAAAACCTT+AGG + chr1_4:48956083-48956102 None:intergenic 25.0%
! TATTTGTATCATATTCTGTC+TGG - chr1_4:48956104-48956123 Msa0167160:CDS 25.0%
!!! GCAAGTAAACTTTAAGATTA+TGG + chr1_4:48956176-48956195 None:intergenic 25.0%
! CTTCTTATTGTAATCAAATG+AGG - chr1_4:48956195-48956214 Msa0167160:CDS 25.0%
!!! ATTTTTAGGTCAATTTCAGT+TGG + chr1_4:48956288-48956307 None:intergenic 25.0%
! TTACTATCATAAGGATACTT+GGG + chr1_4:48956327-48956346 None:intergenic 25.0%
! CATTTGAACTTACTATCATA+AGG + chr1_4:48956336-48956355 None:intergenic 25.0%
!!! GTTAGTTTGGTTGTTTATTT+TGG + chr1_4:48954830-48954849 None:intergenic 25.0%
!!! CTCTTTTGATAATCTTAATG+TGG + chr1_4:48954905-48954924 None:intergenic 25.0%
! CAATATTGTTGGACTTTAAA+GGG + chr1_4:48955055-48955074 None:intergenic 25.0%
! TTCTTGTTGCAATTATACAT+TGG - chr1_4:48955290-48955309 Msa0167160:intron 25.0%
!!! AAGTGAGTTTTAGTTGAAAT+AGG + chr1_4:48955472-48955491 None:intergenic 25.0%
! TATTTCAACTAAAACTCACT+TGG - chr1_4:48955471-48955490 Msa0167160:intron 25.0%
! ATTTCAACTAAAACTCACTT+GGG - chr1_4:48955472-48955491 Msa0167160:intron 25.0%
! TAGCTAAAGATAGTTGAAAT+AGG + chr1_4:48955612-48955631 None:intergenic 25.0%
! ATAGTTATTTGTCGATACAT+TGG + chr1_4:48955977-48955996 None:intergenic 25.0%
!! TTTTGACATGAAAAAACCTT+AGG + chr1_4:48956083-48956102 None:intergenic 25.0%
! TATTTGTATCATATTCTGTC+TGG - chr1_4:48956104-48956123 Msa0167160:CDS 25.0%
!!! GCAAGTAAACTTTAAGATTA+TGG + chr1_4:48956176-48956195 None:intergenic 25.0%
! CTTCTTATTGTAATCAAATG+AGG - chr1_4:48956195-48956214 Msa0167160:CDS 25.0%
!!! ATTTTTAGGTCAATTTCAGT+TGG + chr1_4:48956288-48956307 None:intergenic 25.0%
! TTACTATCATAAGGATACTT+GGG + chr1_4:48956327-48956346 None:intergenic 25.0%
! CATTTGAACTTACTATCATA+AGG + chr1_4:48956336-48956355 None:intergenic 25.0%
! ACAACATTATCCAATGGATT+GGG - chr1_4:48954727-48954746 Msa0167160:three_prime_UTR 30.0%
!!! AGTTTGGTTGTTTATTTTGG+AGG + chr1_4:48954827-48954846 None:intergenic 30.0%
AAAAGGACAAGATTAGATTG+AGG + chr1_4:48954881-48954900 None:intergenic 30.0%
GATAATCTTAATGTGGCAAA+AGG + chr1_4:48954898-48954917 None:intergenic 30.0%
CCAATATTGTTGGACTTTAA+AGG + chr1_4:48955056-48955075 None:intergenic 30.0%
!! CCTTTAAAGTCCAACAATAT+TGG - chr1_4:48955053-48955072 Msa0167160:three_prime_UTR 30.0%
AGAAGAAGAACCAATATTGT+TGG + chr1_4:48955066-48955085 None:intergenic 30.0%
TGATACTACTTATGACTTTG+TGG - chr1_4:48955386-48955405 Msa0167160:CDS 30.0%
! TTGGTTGAAATTTGAGTTTG+AGG + chr1_4:48955830-48955849 None:intergenic 30.0%
GAGGAAAAAACTTAAAGGTT+TGG + chr1_4:48955849-48955868 None:intergenic 30.0%
!!! GTTTTTTCCTCATAATCCAT+TGG - chr1_4:48955858-48955877 Msa0167160:intron 30.0%
ATCGACAAATAACTATGCTT+TGG - chr1_4:48955981-48956000 Msa0167160:intron 30.0%
! ATATTGAAGTTACTAGCCTA+AGG - chr1_4:48956064-48956083 Msa0167160:CDS 30.0%
ATACTCCTAAATGCCTAATT+AGG - chr1_4:48956230-48956249 Msa0167160:CDS 30.0%
CTTACTATCATAAGGATACT+TGG + chr1_4:48956328-48956347 None:intergenic 30.0%
TAAGTTCAAATGAGTGACAT+TGG - chr1_4:48956344-48956363 Msa0167160:five_prime_UTR 30.0%
!!! ACTACCTTGCAATTTTTTTG+TGG - chr1_4:48956401-48956420 Msa0167160:five_prime_UTR 30.0%
!!! CTACCTTGCAATTTTTTTGT+GGG - chr1_4:48956402-48956421 Msa0167160:five_prime_UTR 30.0%
! TTTTGTGGGTGATATATTCT+TGG - chr1_4:48956416-48956435 Msa0167160:five_prime_UTR 30.0%
! ACAACATTATCCAATGGATT+GGG - chr1_4:48954727-48954746 Msa0167160:three_prime_UTR 30.0%
!!! AGTTTGGTTGTTTATTTTGG+AGG + chr1_4:48954827-48954846 None:intergenic 30.0%
AAAAGGACAAGATTAGATTG+AGG + chr1_4:48954881-48954900 None:intergenic 30.0%
GATAATCTTAATGTGGCAAA+AGG + chr1_4:48954898-48954917 None:intergenic 30.0%
CCAATATTGTTGGACTTTAA+AGG + chr1_4:48955056-48955075 None:intergenic 30.0%
!! CCTTTAAAGTCCAACAATAT+TGG - chr1_4:48955053-48955072 Msa0167160:three_prime_UTR 30.0%
AGAAGAAGAACCAATATTGT+TGG + chr1_4:48955066-48955085 None:intergenic 30.0%
TGATACTACTTATGACTTTG+TGG - chr1_4:48955386-48955405 Msa0167160:CDS 30.0%
! TTGGTTGAAATTTGAGTTTG+AGG + chr1_4:48955830-48955849 None:intergenic 30.0%
GAGGAAAAAACTTAAAGGTT+TGG + chr1_4:48955849-48955868 None:intergenic 30.0%
!!! GTTTTTTCCTCATAATCCAT+TGG - chr1_4:48955858-48955877 Msa0167160:intron 30.0%
ATCGACAAATAACTATGCTT+TGG - chr1_4:48955981-48956000 Msa0167160:intron 30.0%
! ATATTGAAGTTACTAGCCTA+AGG - chr1_4:48956064-48956083 Msa0167160:CDS 30.0%
ATACTCCTAAATGCCTAATT+AGG - chr1_4:48956230-48956249 Msa0167160:CDS 30.0%
CTTACTATCATAAGGATACT+TGG + chr1_4:48956328-48956347 None:intergenic 30.0%
TAAGTTCAAATGAGTGACAT+TGG - chr1_4:48956344-48956363 Msa0167160:five_prime_UTR 30.0%
!!! ACTACCTTGCAATTTTTTTG+TGG - chr1_4:48956401-48956420 Msa0167160:five_prime_UTR 30.0%
!!! CTACCTTGCAATTTTTTTGT+GGG - chr1_4:48956402-48956421 Msa0167160:five_prime_UTR 30.0%
! TTTTGTGGGTGATATATTCT+TGG - chr1_4:48956416-48956435 Msa0167160:five_prime_UTR 30.0%
GTAGTGACAACATTATCCAA+TGG - chr1_4:48954721-48954740 Msa0167160:three_prime_UTR 35.0%
GACAACATTATCCAATGGAT+TGG - chr1_4:48954726-48954745 Msa0167160:three_prime_UTR 35.0%
!! TTATCCAATGGATTGGGATA+TGG - chr1_4:48954733-48954752 Msa0167160:three_prime_UTR 35.0%
GATTAGATTGAGGTATGAGA+GGG + chr1_4:48954871-48954890 None:intergenic 35.0%
AGATTAGATTGAGGTATGAG+AGG + chr1_4:48954872-48954891 None:intergenic 35.0%
CACAGAAAGAAAGATAGTCA+TGG - chr1_4:48954932-48954951 Msa0167160:three_prime_UTR 35.0%
! CTTTAAAGGGAACATCAACA+TGG + chr1_4:48955042-48955061 None:intergenic 35.0%
!! TTCTTCTAGACTTGTTGTCA+GGG - chr1_4:48955082-48955101 Msa0167160:three_prime_UTR 35.0%
ATTACCTTAGAACCTCTCTT+GGG + chr1_4:48955203-48955222 None:intergenic 35.0%
AATTACCTTAGAACCTCTCT+TGG + chr1_4:48955204-48955223 None:intergenic 35.0%
CTAAACTAGTCCACCTAAAT+TGG + chr1_4:48955572-48955591 None:intergenic 35.0%
! CTATCTTTAGCTAGTCTACA+CGG - chr1_4:48955619-48955638 Msa0167160:intron 35.0%
GATATTTCTTTGCACTCAAC+AGG - chr1_4:48955731-48955750 Msa0167160:intron 35.0%
!! TGAGTTACCAATGGATTATG+AGG + chr1_4:48955868-48955887 None:intergenic 35.0%
! GTAACTCAGCTCTTGTTTAA+CGG - chr1_4:48955880-48955899 Msa0167160:intron 35.0%
ACATGCCTAATTAGGCATTT+AGG + chr1_4:48956238-48956257 None:intergenic 35.0%
! ATGTAAGTGCCGTACATTTA+AGG - chr1_4:48956254-48956273 Msa0167160:five_prime_UTR 35.0%
TCACCCACAAAAAAATTGCA+AGG + chr1_4:48956408-48956427 None:intergenic 35.0%
ATTCTTGGTTAGAGTTCGAT+AGG - chr1_4:48956431-48956450 Msa0167160:five_prime_UTR 35.0%
GTAGTGACAACATTATCCAA+TGG - chr1_4:48954721-48954740 Msa0167160:three_prime_UTR 35.0%
GACAACATTATCCAATGGAT+TGG - chr1_4:48954726-48954745 Msa0167160:three_prime_UTR 35.0%
!! TTATCCAATGGATTGGGATA+TGG - chr1_4:48954733-48954752 Msa0167160:three_prime_UTR 35.0%
GATTAGATTGAGGTATGAGA+GGG + chr1_4:48954871-48954890 None:intergenic 35.0%
AGATTAGATTGAGGTATGAG+AGG + chr1_4:48954872-48954891 None:intergenic 35.0%
CACAGAAAGAAAGATAGTCA+TGG - chr1_4:48954932-48954951 Msa0167160:three_prime_UTR 35.0%
! CTTTAAAGGGAACATCAACA+TGG + chr1_4:48955042-48955061 None:intergenic 35.0%
!! TTCTTCTAGACTTGTTGTCA+GGG - chr1_4:48955082-48955101 Msa0167160:three_prime_UTR 35.0%
ATTACCTTAGAACCTCTCTT+GGG + chr1_4:48955203-48955222 None:intergenic 35.0%
AATTACCTTAGAACCTCTCT+TGG + chr1_4:48955204-48955223 None:intergenic 35.0%
CTAAACTAGTCCACCTAAAT+TGG + chr1_4:48955572-48955591 None:intergenic 35.0%
! CTATCTTTAGCTAGTCTACA+CGG - chr1_4:48955619-48955638 Msa0167160:intron 35.0%
GATATTTCTTTGCACTCAAC+AGG - chr1_4:48955731-48955750 Msa0167160:intron 35.0%
!! TGAGTTACCAATGGATTATG+AGG + chr1_4:48955868-48955887 None:intergenic 35.0%
! GTAACTCAGCTCTTGTTTAA+CGG - chr1_4:48955880-48955899 Msa0167160:intron 35.0%
ACATGCCTAATTAGGCATTT+AGG + chr1_4:48956238-48956257 None:intergenic 35.0%
! ATGTAAGTGCCGTACATTTA+AGG - chr1_4:48956254-48956273 Msa0167160:five_prime_UTR 35.0%
TCACCCACAAAAAAATTGCA+AGG + chr1_4:48956408-48956427 None:intergenic 35.0%
ATTCTTGGTTAGAGTTCGAT+AGG - chr1_4:48956431-48956450 Msa0167160:five_prime_UTR 35.0%
GATTGACACCAAAGTTTCTG+AGG - chr1_4:48954788-48954807 Msa0167160:three_prime_UTR 40.0%
CATCTCATCCTCAGAAACTT+TGG + chr1_4:48954799-48954818 None:intergenic 40.0%
GTGAGTGAAGTGTGTTAGTT+TGG + chr1_4:48954843-48954862 None:intergenic 40.0%
CCTTGATGAAGTTGTGTTGT+TGG + chr1_4:48955015-48955034 None:intergenic 40.0%
CCAACAACACAACTTCATCA+AGG - chr1_4:48955012-48955031 Msa0167160:three_prime_UTR 40.0%
!! CTTCTTCTAGACTTGTTGTC+AGG - chr1_4:48955081-48955100 Msa0167160:three_prime_UTR 40.0%
TTACCTTAGAACCTCTCTTG+GGG + chr1_4:48955202-48955221 None:intergenic 40.0%
CAACTAAAACTCACTTGGGT+TGG - chr1_4:48955476-48955495 Msa0167160:intron 40.0%
AGGTCTCAAGTCAATATCAC+CGG + chr1_4:48955503-48955522 None:intergenic 40.0%
AATCTCCGTAGTGCCAATTT+AGG - chr1_4:48955556-48955575 Msa0167160:intron 40.0%
!! TCGGTGATTAGTCTCATAAC+CGG - chr1_4:48955647-48955666 Msa0167160:intron 40.0%
ATAACCGGTCTAAATTGACG+AGG - chr1_4:48955662-48955681 Msa0167160:intron 40.0%
TAACCGGTCTAAATTGACGA+GGG - chr1_4:48955663-48955682 Msa0167160:intron 40.0%
CTCAACAGGTGAAGATTCTT+AGG - chr1_4:48955745-48955764 Msa0167160:intron 40.0%
ACAGGTGAAGATTCTTAGGA+AGG - chr1_4:48955749-48955768 Msa0167160:intron 40.0%
TTCTTAGGAAGGAATCCTAC+TGG - chr1_4:48955760-48955779 Msa0167160:intron 40.0%
AAGGAATCCTACTGGTACAA+AGG - chr1_4:48955768-48955787 Msa0167160:intron 40.0%
AACAAGAGCTGAGTTACCAA+TGG + chr1_4:48955877-48955896 None:intergenic 40.0%
!! GTGCATTGGCCTTAAATGTA+CGG + chr1_4:48956266-48956285 None:intergenic 40.0%
! GTCAATTTCAGTTGGTGCAT+TGG + chr1_4:48956280-48956299 None:intergenic 40.0%
GATTGACACCAAAGTTTCTG+AGG - chr1_4:48954788-48954807 Msa0167160:three_prime_UTR 40.0%
CATCTCATCCTCAGAAACTT+TGG + chr1_4:48954799-48954818 None:intergenic 40.0%
GTGAGTGAAGTGTGTTAGTT+TGG + chr1_4:48954843-48954862 None:intergenic 40.0%
CCTTGATGAAGTTGTGTTGT+TGG + chr1_4:48955015-48955034 None:intergenic 40.0%
CCAACAACACAACTTCATCA+AGG - chr1_4:48955012-48955031 Msa0167160:three_prime_UTR 40.0%
!! CTTCTTCTAGACTTGTTGTC+AGG - chr1_4:48955081-48955100 Msa0167160:three_prime_UTR 40.0%
TTACCTTAGAACCTCTCTTG+GGG + chr1_4:48955202-48955221 None:intergenic 40.0%
CAACTAAAACTCACTTGGGT+TGG - chr1_4:48955476-48955495 Msa0167160:intron 40.0%
AGGTCTCAAGTCAATATCAC+CGG + chr1_4:48955503-48955522 None:intergenic 40.0%
AATCTCCGTAGTGCCAATTT+AGG - chr1_4:48955556-48955575 Msa0167160:intron 40.0%
!! TCGGTGATTAGTCTCATAAC+CGG - chr1_4:48955647-48955666 Msa0167160:intron 40.0%
ATAACCGGTCTAAATTGACG+AGG - chr1_4:48955662-48955681 Msa0167160:intron 40.0%
TAACCGGTCTAAATTGACGA+GGG - chr1_4:48955663-48955682 Msa0167160:intron 40.0%
CTCAACAGGTGAAGATTCTT+AGG - chr1_4:48955745-48955764 Msa0167160:intron 40.0%
ACAGGTGAAGATTCTTAGGA+AGG - chr1_4:48955749-48955768 Msa0167160:intron 40.0%
TTCTTAGGAAGGAATCCTAC+TGG - chr1_4:48955760-48955779 Msa0167160:intron 40.0%
AAGGAATCCTACTGGTACAA+AGG - chr1_4:48955768-48955787 Msa0167160:intron 40.0%
AACAAGAGCTGAGTTACCAA+TGG + chr1_4:48955877-48955896 None:intergenic 40.0%
!! GTGCATTGGCCTTAAATGTA+CGG + chr1_4:48956266-48956285 None:intergenic 40.0%
! GTCAATTTCAGTTGGTGCAT+TGG + chr1_4:48956280-48956299 None:intergenic 40.0%
TGCACCATATCCCAATCCAT+TGG + chr1_4:48954740-48954759 None:intergenic 45.0%
GTCAATCGTTTCCTCCACTT+GGG + chr1_4:48954775-48954794 None:intergenic 45.0%
TGTCAATCGTTTCCTCCACT+TGG + chr1_4:48954776-48954795 None:intergenic 45.0%
GGTCTCAAGTCAATATCACC+GGG + chr1_4:48955502-48955521 None:intergenic 45.0%
GTCCACCTAAATTGGCACTA+CGG + chr1_4:48955564-48955583 None:intergenic 45.0%
! GCTAGTCTACACGGTCAAAT+CGG - chr1_4:48955628-48955647 Msa0167160:intron 45.0%
TCACCCTCGTCAATTTAGAC+CGG + chr1_4:48955669-48955688 None:intergenic 45.0%
! CGGATTTCTCTTTGTTGTGC+AGG - chr1_4:48955900-48955919 Msa0167160:intron 45.0%
CATTGGCGTAGTTCACTTTC+TGG + chr1_4:48955960-48955979 None:intergenic 45.0%
ATGGGCAACTGCACAATGAA+TGG + chr1_4:48956157-48956176 None:intergenic 45.0%
CGGCACTTACATGCCTAATT+AGG + chr1_4:48956246-48956265 None:intergenic 45.0%
CTTGGTTAGAGTTCGATAGG+AGG - chr1_4:48956434-48956453 Msa0167160:five_prime_UTR 45.0%
TGCACCATATCCCAATCCAT+TGG + chr1_4:48954740-48954759 None:intergenic 45.0%
GTCAATCGTTTCCTCCACTT+GGG + chr1_4:48954775-48954794 None:intergenic 45.0%
TGTCAATCGTTTCCTCCACT+TGG + chr1_4:48954776-48954795 None:intergenic 45.0%
GGTCTCAAGTCAATATCACC+GGG + chr1_4:48955502-48955521 None:intergenic 45.0%
GTCCACCTAAATTGGCACTA+CGG + chr1_4:48955564-48955583 None:intergenic 45.0%
! GCTAGTCTACACGGTCAAAT+CGG - chr1_4:48955628-48955647 Msa0167160:intron 45.0%
TCACCCTCGTCAATTTAGAC+CGG + chr1_4:48955669-48955688 None:intergenic 45.0%
! CGGATTTCTCTTTGTTGTGC+AGG - chr1_4:48955900-48955919 Msa0167160:intron 45.0%
CATTGGCGTAGTTCACTTTC+TGG + chr1_4:48955960-48955979 None:intergenic 45.0%
ATGGGCAACTGCACAATGAA+TGG + chr1_4:48956157-48956176 None:intergenic 45.0%
CGGCACTTACATGCCTAATT+AGG + chr1_4:48956246-48956265 None:intergenic 45.0%
CTTGGTTAGAGTTCGATAGG+AGG - chr1_4:48956434-48956453 Msa0167160:five_prime_UTR 45.0%
CACAAGTGTCATCACCCAAG+TGG - chr1_4:48954758-48954777 Msa0167160:three_prime_UTR 50.0%
AAGTGTCATCACCCAAGTGG+AGG - chr1_4:48954761-48954780 Msa0167160:three_prime_UTR 50.0%
!! ATTGGTGGTGGCTTGGGTTT+AGG + chr1_4:48955176-48955195 None:intergenic 50.0%
AAACCCAAGCCACCACCAAT+TGG - chr1_4:48955176-48955195 Msa0167160:exon 50.0%
!! AAAACTCACTTGGGTTGGCC+CGG - chr1_4:48955481-48955500 Msa0167160:intron 50.0%
! TTGAAGAGGAGCACACTCTC+AGG + chr1_4:48955523-48955542 None:intergenic 50.0%
! TGAGAGTGTGCTCCTCTTCA+AGG - chr1_4:48955522-48955541 Msa0167160:intron 50.0%
TCGAACCTGAGACCTTGAAG+AGG + chr1_4:48955537-48955556 None:intergenic 50.0%
CTCCGTAGTGCCAATTTAGG+TGG - chr1_4:48955559-48955578 Msa0167160:intron 50.0%
! TCCTACTGGTACAAAGGCAC+TGG - chr1_4:48955774-48955793 Msa0167160:intron 50.0%
TCCAGTGCCTTTGTACCAGT+AGG + chr1_4:48955778-48955797 None:intergenic 50.0%
! TCTGGAATCGAACCACGACA+GGG + chr1_4:48955942-48955961 None:intergenic 50.0%
!! TTCTGGAATCGAACCACGAC+AGG + chr1_4:48955943-48955962 None:intergenic 50.0%
CACAAGTGTCATCACCCAAG+TGG - chr1_4:48954758-48954777 Msa0167160:three_prime_UTR 50.0%
AAGTGTCATCACCCAAGTGG+AGG - chr1_4:48954761-48954780 Msa0167160:three_prime_UTR 50.0%
!! ATTGGTGGTGGCTTGGGTTT+AGG + chr1_4:48955176-48955195 None:intergenic 50.0%
AAACCCAAGCCACCACCAAT+TGG - chr1_4:48955176-48955195 Msa0167160:exon 50.0%
!! AAAACTCACTTGGGTTGGCC+CGG - chr1_4:48955481-48955500 Msa0167160:intron 50.0%
! TTGAAGAGGAGCACACTCTC+AGG + chr1_4:48955523-48955542 None:intergenic 50.0%
! TGAGAGTGTGCTCCTCTTCA+AGG - chr1_4:48955522-48955541 Msa0167160:intron 50.0%
TCGAACCTGAGACCTTGAAG+AGG + chr1_4:48955537-48955556 None:intergenic 50.0%
CTCCGTAGTGCCAATTTAGG+TGG - chr1_4:48955559-48955578 Msa0167160:intron 50.0%
! TCCTACTGGTACAAAGGCAC+TGG - chr1_4:48955774-48955793 Msa0167160:intron 50.0%
TCCAGTGCCTTTGTACCAGT+AGG + chr1_4:48955778-48955797 None:intergenic 50.0%
! TCTGGAATCGAACCACGACA+GGG + chr1_4:48955942-48955961 None:intergenic 50.0%
!! TTCTGGAATCGAACCACGAC+AGG + chr1_4:48955943-48955962 None:intergenic 50.0%
AGTCATGGCTAGCAGCAGCA+TGG - chr1_4:48954947-48954966 Msa0167160:three_prime_UTR 55.0%
AGCATGGCATCAGCAGCTAC+TGG - chr1_4:48954963-48954982 Msa0167160:three_prime_UTR 55.0%
TGTTGTCAGGGCAACCGATG+AGG - chr1_4:48955094-48955113 Msa0167160:three_prime_UTR 55.0%
! GGTGGCTTGGGTTTAGGAGT+AGG + chr1_4:48955170-48955189 None:intergenic 55.0%
GAACCTCTCTTGGGGCCAAT+TGG + chr1_4:48955194-48955213 None:intergenic 55.0%
TGGCCCCAAGAGAGGTTCTA+AGG - chr1_4:48955196-48955215 Msa0167160:CDS 55.0%
GTGCTCCTCTTCAAGGTCTC+AGG - chr1_4:48955529-48955548 Msa0167160:intron 55.0%
ACGACAGGGTAGCGAGTCTT+GGG + chr1_4:48955928-48955947 None:intergenic 55.0%
AGTCATGGCTAGCAGCAGCA+TGG - chr1_4:48954947-48954966 Msa0167160:three_prime_UTR 55.0%
AGCATGGCATCAGCAGCTAC+TGG - chr1_4:48954963-48954982 Msa0167160:three_prime_UTR 55.0%
TGTTGTCAGGGCAACCGATG+AGG - chr1_4:48955094-48955113 Msa0167160:three_prime_UTR 55.0%
! GGTGGCTTGGGTTTAGGAGT+AGG + chr1_4:48955170-48955189 None:intergenic 55.0%
GAACCTCTCTTGGGGCCAAT+TGG + chr1_4:48955194-48955213 None:intergenic 55.0%
TGGCCCCAAGAGAGGTTCTA+AGG - chr1_4:48955196-48955215 Msa0167160:CDS 55.0%
GTGCTCCTCTTCAAGGTCTC+AGG - chr1_4:48955529-48955548 Msa0167160:intron 55.0%
ACGACAGGGTAGCGAGTCTT+GGG + chr1_4:48955928-48955947 None:intergenic 55.0%
ATCACCAGCTGGAGCAGTGG+AGG + chr1_4:48955141-48955160 None:intergenic 60.0%
AGCATCACCAGCTGGAGCAG+TGG + chr1_4:48955144-48955163 None:intergenic 60.0%
GTAGGAGCAGCATCACCAGC+TGG + chr1_4:48955152-48955171 None:intergenic 60.0%
!! GGGCCAATTGGTGGTGGCTT+GGG + chr1_4:48955182-48955201 None:intergenic 60.0%
CTCTTGGGGCCAATTGGTGG+TGG + chr1_4:48955188-48955207 None:intergenic 60.0%
CCTCTCTTGGGGCCAATTGG+TGG + chr1_4:48955191-48955210 None:intergenic 60.0%
CCACCAATTGGCCCCAAGAG+AGG - chr1_4:48955188-48955207 Msa0167160:CDS 60.0%
CGACAGGGTAGCGAGTCTTG+GGG + chr1_4:48955927-48955946 None:intergenic 60.0%
CACGACAGGGTAGCGAGTCT+TGG + chr1_4:48955929-48955948 None:intergenic 60.0%
CAAGACTCGCTACCCTGTCG+TGG - chr1_4:48955927-48955946 Msa0167160:intron 60.0%
ATCACCAGCTGGAGCAGTGG+AGG + chr1_4:48955141-48955160 None:intergenic 60.0%
AGCATCACCAGCTGGAGCAG+TGG + chr1_4:48955144-48955163 None:intergenic 60.0%
GTAGGAGCAGCATCACCAGC+TGG + chr1_4:48955152-48955171 None:intergenic 60.0%
!! GGGCCAATTGGTGGTGGCTT+GGG + chr1_4:48955182-48955201 None:intergenic 60.0%
CTCTTGGGGCCAATTGGTGG+TGG + chr1_4:48955188-48955207 None:intergenic 60.0%
CCTCTCTTGGGGCCAATTGG+TGG + chr1_4:48955191-48955210 None:intergenic 60.0%
CCACCAATTGGCCCCAAGAG+AGG - chr1_4:48955188-48955207 Msa0167160:CDS 60.0%
CGACAGGGTAGCGAGTCTTG+GGG + chr1_4:48955927-48955946 None:intergenic 60.0%
CACGACAGGGTAGCGAGTCT+TGG + chr1_4:48955929-48955948 None:intergenic 60.0%
CAAGACTCGCTACCCTGTCG+TGG - chr1_4:48955927-48955946 Msa0167160:intron 60.0%
!! GGGGCCAATTGGTGGTGGCT+TGG + chr1_4:48955183-48955202 None:intergenic 65.0%
!! GGGGCCAATTGGTGGTGGCT+TGG + chr1_4:48955183-48955202 None:intergenic 65.0%
GGCAACCGATGAGGCTGCCC+CGG - chr1_4:48955103-48955122 Msa0167160:three_prime_UTR 70.0%
TGCAGCCGGGGCAGCCTCAT+CGG + chr1_4:48955111-48955130 None:intergenic 70.0%
TGGAGGCAGCAGGTGCAGCC+GGG + chr1_4:48955124-48955143 None:intergenic 70.0%
GTGGAGGCAGCAGGTGCAGC+CGG + chr1_4:48955125-48955144 None:intergenic 70.0%
GCTGGAGCAGTGGAGGCAGC+AGG + chr1_4:48955134-48955153 None:intergenic 70.0%
GCTGCCTCCACTGCTCCAGC+TGG - chr1_4:48955134-48955153 Msa0167160:three_prime_UTR 70.0%
GGCAACCGATGAGGCTGCCC+CGG - chr1_4:48955103-48955122 Msa0167160:three_prime_UTR 70.0%
TGCAGCCGGGGCAGCCTCAT+CGG + chr1_4:48955111-48955130 None:intergenic 70.0%
TGGAGGCAGCAGGTGCAGCC+GGG + chr1_4:48955124-48955143 None:intergenic 70.0%
GTGGAGGCAGCAGGTGCAGC+CGG + chr1_4:48955125-48955144 None:intergenic 70.0%
GCTGGAGCAGTGGAGGCAGC+AGG + chr1_4:48955134-48955153 None:intergenic 70.0%
GCTGCCTCCACTGCTCCAGC+TGG - chr1_4:48955134-48955153 Msa0167160:three_prime_UTR 70.0%
GGAGGCAGCAGGTGCAGCCG+GGG + chr1_4:48955123-48955142 None:intergenic 75.0%
GGAGGCAGCAGGTGCAGCCG+GGG + chr1_4:48955123-48955142 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 48954681 48956523 48954681 ID=Msa0167160;Name=Msa0167160
chr1_4 mRNA 48954681 48956523 48954681 ID=Msa0167160-mRNA-1;Parent=Msa0167160;Name=Msa0167160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=270|1|1|1|1|1|3|497|145
chr1_4 exon 48954681 48955282 48954681 ID=Msa0167160-mRNA-1:exon:14319;Parent=Msa0167160-mRNA-1
chr1_4 exon 48955386 48955451 48955386 ID=Msa0167160-mRNA-1:exon:14318;Parent=Msa0167160-mRNA-1
chr1_4 exon 48955987 48956523 48955987 ID=Msa0167160-mRNA-1:exon:14317;Parent=Msa0167160-mRNA-1
chr1_4 five_prime_UTR 48956254 48956523 48956254 ID=Msa0167160-mRNA-1:five_prime_utr;Parent=Msa0167160-mRNA-1
chr1_4 CDS 48955987 48956253 48955987 ID=Msa0167160-mRNA-1:cds;Parent=Msa0167160-mRNA-1
chr1_4 CDS 48955386 48955451 48955386 ID=Msa0167160-mRNA-1:cds;Parent=Msa0167160-mRNA-1
chr1_4 CDS 48955178 48955282 48955178 ID=Msa0167160-mRNA-1:cds;Parent=Msa0167160-mRNA-1
chr1_4 three_prime_UTR 48954681 48955177 48954681 ID=Msa0167160-mRNA-1:three_prime_utr;Parent=Msa0167160-mRNA-1
Gene Sequence

>Msa0167160

ATGGCTAGCAGCAGCATGGCATCAGCAGCTACTGGATTTTTGTTGTCACTTAATGTTGCTGCCAACAACACAACTTCATCAAGGAGTACCATGTTGATGTTCCCTTTAAAGTCCAACAATATTGGTTCTTCTTCTTCTAGACTTGTTGTCAGGGCAACCGATGAGGCTGCCCCGGCTGCACCTGCTGCCTCCACTGCTCCAGCTGGTGATGCTGCTCCTACTCCTAAACCCAAGCCACCACCAATTGGCCCCAAGAGAGGTTCTAAGGTGAAGATTCTTAGGAAGGAATCCTACTGGTACAAAGGCACTGGATCAGTTGTTGCTGTTGATCAAGACCCCAAGACTCGCTACCCTGTCGTGGTTCGATTCCAGAAAGTGAACTACGCCAATGTATCGACAAATAACTATGCTTTGGATGAGATTGAAGAAGTTGTTTAA

Protein sequence

>Msa0167160

MASSSMASAATGFLLSLNVAANNTTSSRSTMLMFPLKSNNIGSSSSRLVVRATDEAAPAAPAASTAPAGDAAPTPKPKPPPIGPKRGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFQKVNYANVSTNNYALDEIEEVV*