AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1271220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1271220 MtrunA17_Chr8g0335111 98.276 232 4 0 1 232 1 232 1.25e-168 464
Msa1271220 MtrunA17_Chr3g0109401 29.524 105 74 0 127 231 73 177 2.14e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1271220 AT4G05180.2 69.362 235 64 4 1 232 1 230 1.04e-110 317
Msa1271220 AT4G05180.1 69.362 235 64 4 1 232 1 230 1.04e-110 317
Msa1271220 AT4G21280.1 69.737 228 64 3 5 232 1 223 1.94e-105 304
Msa1271220 AT4G21280.2 69.432 229 64 4 5 232 1 224 1.27e-103 299
Msa1271220 AT3G01440.1 25.989 177 119 4 61 231 49 219 8.66e-11 60.1

Find 63 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATATGGCCAAGCTTTC+TGG 0.130603 8_3:-4668434 None:intergenic
TCACTTTATGCAATTCTTAA+TGG 0.159194 8_3:+4669289 Msa1271220:three_prime_UTR
AATGATGTTCTTAGCAAAAT+TGG 0.209646 8_3:+4669134 Msa1271220:CDS
GGTGGCCCTCCTCCACCTTC+TGG 0.276244 8_3:+4667475 Msa1271220:CDS
TCTTGTGTAAGCTTTGTCTA+TGG 0.296268 8_3:+4669180 Msa1271220:three_prime_UTR
GATATCCTGGAAGAGCTTTC+CGG 0.325246 8_3:-4668556 None:intergenic
AGGAGGGCCACCAACTTTAA+TGG 0.339587 8_3:-4667464 None:intergenic
CGTAGATCATTCTGAAGATA+TGG 0.365781 8_3:-4668447 None:intergenic
GTGCTTGGTCTTGTTGCAAC+TGG 0.375439 8_3:+4667394 Msa1271220:CDS
CTTTGGCTTTGCAGAGATGA+TGG 0.383227 8_3:-4668505 None:intergenic
TGGTCTTGTTGCAACTGGTT+TGG 0.399632 8_3:+4667399 Msa1271220:CDS
ACTCACCGGAAAGCTCTTCC+AGG 0.411588 8_3:+4668551 Msa1271220:CDS
TTTCTTTCAATGGTAGGTTA+AGG 0.416462 8_3:-4668320 None:intergenic
CAAGCTATGGCTTCAATGGC+TGG 0.420548 8_3:+4667208 Msa1271220:CDS
TAAAGAAGTAATGGATGAAA+AGG 0.422031 8_3:-4667128 None:intergenic
GGCTCAAGCTATGGCTTCAA+TGG 0.429116 8_3:+4667204 Msa1271220:CDS
GGAGGGCCACCAACTTTAAT+GGG 0.432194 8_3:-4667463 None:intergenic
TGTTAAAGCACAACAACAAC+AGG 0.432911 8_3:+4667354 Msa1271220:CDS
TTAACCTACCATTGAAAGAA+AGG 0.436888 8_3:+4668322 Msa1271220:CDS
TTGCAGAGATGATGGTGTTA+AGG 0.438783 8_3:-4668497 None:intergenic
GCTGCCTCAGTTGGTGTCAA+TGG 0.441161 8_3:-4668357 None:intergenic
AGGTAGAACCTTTCTTTCAA+TGG 0.442299 8_3:-4668330 None:intergenic
CTTTCCGGTGAGTTCCTTGA+GGG 0.450519 8_3:-4668541 None:intergenic
GTCTCAGAGCTGGCTATCTT+CGG 0.456619 8_3:+4668469 Msa1271220:CDS
GCTCTTGCAGCTGCCTCAGT+TGG 0.457785 8_3:-4668366 None:intergenic
GCCATTCCCATTAAAGTTGG+TGG 0.462320 8_3:+4667457 Msa1271220:CDS
TACTTACATTGTCGATATCC+TGG 0.468976 8_3:-4668569 None:intergenic
AGGCCACCAGAAGGTGGAGG+AGG 0.471417 8_3:-4667481 None:intergenic
GGCCCTCCTCCACCTTCTGG+TGG 0.478722 8_3:+4667478 Msa1271220:CDS
CAAGTGGAAAATGTTAGATA+AGG 0.506588 8_3:+4667054 Msa1271220:five_prime_UTR
AGAACCTTTCTTTCAATGGT+AGG 0.507585 8_3:-4668326 None:intergenic
TGAGGCAGCTGCAAGAGCTA+AGG 0.508030 8_3:+4668371 Msa1271220:CDS
GCCACCAACTTTAATGGGAA+TGG 0.510062 8_3:-4667458 None:intergenic
TTCAACTGAGTGGATCAAAC+AGG 0.511674 8_3:+4667275 Msa1271220:CDS
TGTTCAAGCTGTTCTTGCTG+AGG 0.514649 8_3:+4667435 Msa1271220:CDS
TCAATGGCTGGTTGCTTACG+TGG 0.518584 8_3:+4667220 Msa1271220:CDS
AAGAACAGCTTGAACAAAAG+AGG 0.520210 8_3:-4667428 None:intergenic
TTCATCATCTCAAGCTGTGA+TGG 0.526246 8_3:+4667243 Msa1271220:CDS
GAGGCCATTCCCATTAAAGT+TGG 0.533037 8_3:+4667454 Msa1271220:CDS
AAAATTTGCTATAAGCAAGC+AGG 0.535603 8_3:+4669256 Msa1271220:three_prime_UTR
AGTAGCAGAAGAGCAGTGCT+TGG 0.543090 8_3:+4667379 Msa1271220:CDS
AATGATCTACGTCTCAGAGC+TGG 0.548338 8_3:+4668459 Msa1271220:CDS
TAGTACTTCTCTGCATCTGA+GGG 0.548759 8_3:-4669089 None:intergenic
AGTTCATAGACCAGAAAGCT+TGG 0.554807 8_3:+4668424 Msa1271220:CDS
TTATGACAATAAAGAAGTAA+TGG 0.556661 8_3:-4667137 None:intergenic
GGCCACCAGAAGGTGGAGGA+GGG 0.557926 8_3:-4667480 None:intergenic
TTGCTGATAATTAGATGACT+TGG 0.566702 8_3:+4669324 Msa1271220:three_prime_UTR
CAGTTGGTGTCAATGGTTGA+AGG 0.570020 8_3:-4668350 None:intergenic
ATGTGAAAATCAAAGCACTT+AGG 0.573292 8_3:-4669377 None:intergenic
ATAGTACTTCTCTGCATCTG+AGG 0.575292 8_3:-4669090 None:intergenic
TCATCTCAAGCTGTGATGGA+AGG 0.586825 8_3:+4667247 Msa1271220:CDS
CGAAGGCCACCAGAAGGTGG+AGG 0.590512 8_3:-4667484 None:intergenic
AAATCCCTCAAGGAACTCAC+CGG 0.605407 8_3:+4668537 Msa1271220:CDS
GCTTTCCGGTGAGTTCCTTG+AGG 0.616393 8_3:-4668542 None:intergenic
CATGATCCAACTTATCCAAG+TGG 0.618047 8_3:+4667038 None:intergenic
TTACGAAGGCCACCAGAAGG+TGG 0.625990 8_3:-4667487 None:intergenic
AACAGGTTGAACATGTTGCA+TGG 0.626500 8_3:+4667292 Msa1271220:CDS
CATCATCTCTGCAAAGCCAA+AGG 0.627597 8_3:+4668506 Msa1271220:CDS
GCATGGTAGCAACAGTAACA+AGG 0.637680 8_3:+4667309 Msa1271220:CDS
TACTTACGAAGGCCACCAGA+AGG 0.643651 8_3:-4667490 None:intergenic
GAAGGAAGTCTTCAACTGAG+TGG 0.680495 8_3:+4667265 Msa1271220:CDS
AGTACTTCTCTGCATCTGAG+GGG 0.682536 8_3:-4669088 None:intergenic
TCAACCATTGACACCAACTG+AGG 0.698559 8_3:+4668353 Msa1271220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACATTTATTAAGAATGA+TGG + chr8_3:4667645-4667664 Msa1271220:intron 15.0%
!!! TATACAATATTACATTTTCA+AGG + chr8_3:4668590-4668609 Msa1271220:intron 15.0%
!!! TTGTTTTTATTGTTTTAAGA+AGG + chr8_3:4669412-4669431 Msa1271220:three_prime_UTR 15.0%
!! TTTACATTTATTAAGAATGA+TGG + chr8_3:4667645-4667664 Msa1271220:intron 15.0%
!!! TATACAATATTACATTTTCA+AGG + chr8_3:4668590-4668609 Msa1271220:intron 15.0%
!!! TTGTTTTTATTGTTTTAAGA+AGG + chr8_3:4669412-4669431 Msa1271220:three_prime_UTR 15.0%
!! TTATGACAATAAAGAAGTAA+TGG - chr8_3:4667140-4667159 None:intergenic 20.0%
!! TTAAATATGAATACTTACGA+AGG - chr8_3:4667504-4667523 None:intergenic 20.0%
!!! TATTTTACCTCTAATTGTAA+TGG + chr8_3:4667682-4667701 Msa1271220:intron 20.0%
!! AAAAAAATGACTAAATTTGC+TGG - chr8_3:4667796-4667815 None:intergenic 20.0%
!!! ATGATATTGCTATTTGAATT+CGG + chr8_3:4667873-4667892 Msa1271220:intron 20.0%
!! TTACAAGAAAAGAAAGAAAT+AGG - chr8_3:4668105-4668124 None:intergenic 20.0%
!!! TTCAACATTCTAGAAATTAT+TGG - chr8_3:4668244-4668263 None:intergenic 20.0%
!!! ATGTTGAATTAACTGATTTA+TGG + chr8_3:4668256-4668275 Msa1271220:intron 20.0%
!!! ATTAACTGATTTATGGAATT+TGG + chr8_3:4668263-4668282 Msa1271220:intron 20.0%
!! TAAATATCGATCTTAAAATC+AGG - chr8_3:4668756-4668775 None:intergenic 20.0%
!! TTATGACAATAAAGAAGTAA+TGG - chr8_3:4667140-4667159 None:intergenic 20.0%
!! TTAAATATGAATACTTACGA+AGG - chr8_3:4667504-4667523 None:intergenic 20.0%
!!! TATTTTACCTCTAATTGTAA+TGG + chr8_3:4667682-4667701 Msa1271220:intron 20.0%
!! AAAAAAATGACTAAATTTGC+TGG - chr8_3:4667796-4667815 None:intergenic 20.0%
!!! ATGATATTGCTATTTGAATT+CGG + chr8_3:4667873-4667892 Msa1271220:intron 20.0%
!! TTACAAGAAAAGAAAGAAAT+AGG - chr8_3:4668105-4668124 None:intergenic 20.0%
!!! TTCAACATTCTAGAAATTAT+TGG - chr8_3:4668244-4668263 None:intergenic 20.0%
!!! ATGTTGAATTAACTGATTTA+TGG + chr8_3:4668256-4668275 Msa1271220:intron 20.0%
!!! ATTAACTGATTTATGGAATT+TGG + chr8_3:4668263-4668282 Msa1271220:intron 20.0%
!! TAAATATCGATCTTAAAATC+AGG - chr8_3:4668756-4668775 None:intergenic 20.0%
!!! TAAAGAAGTAATGGATGAAA+AGG - chr8_3:4667131-4667150 None:intergenic 25.0%
! TACAAAGAAAGTCAAAAACA+TGG + chr8_3:4667183-4667202 Msa1271220:exon 25.0%
! GTATTTATATTTGAGTCAAG+AGG - chr8_3:4667620-4667639 None:intergenic 25.0%
! TATTCTCCTATTAAGAACAT+CGG - chr8_3:4668058-4668077 None:intergenic 25.0%
! ATGTTCTTAATAGGAGAATA+CGG + chr8_3:4668058-4668077 Msa1271220:intron 25.0%
!! ACATTCTAGAAATTATTGGA+TGG - chr8_3:4668240-4668259 None:intergenic 25.0%
!!! TAAATTTGTTGTTGTAGTAC+TGG + chr8_3:4668615-4668634 Msa1271220:intron 25.0%
! CTAAATTGATAAAGAGCTAT+CGG - chr8_3:4668994-4669013 None:intergenic 25.0%
! GATAGCTCTTTATCAATTTA+GGG + chr8_3:4668993-4669012 Msa1271220:intron 25.0%
! AATGATGTTCTTAGCAAAAT+TGG + chr8_3:4669134-4669153 Msa1271220:CDS 25.0%
! TCACTTTATGCAATTCTTAA+TGG + chr8_3:4669289-4669308 Msa1271220:three_prime_UTR 25.0%
!!! TAAAGAAGTAATGGATGAAA+AGG - chr8_3:4667131-4667150 None:intergenic 25.0%
! TACAAAGAAAGTCAAAAACA+TGG + chr8_3:4667183-4667202 Msa1271220:exon 25.0%
! GTATTTATATTTGAGTCAAG+AGG - chr8_3:4667620-4667639 None:intergenic 25.0%
! TATTCTCCTATTAAGAACAT+CGG - chr8_3:4668058-4668077 None:intergenic 25.0%
! ATGTTCTTAATAGGAGAATA+CGG + chr8_3:4668058-4668077 Msa1271220:intron 25.0%
!! ACATTCTAGAAATTATTGGA+TGG - chr8_3:4668240-4668259 None:intergenic 25.0%
!!! TAAATTTGTTGTTGTAGTAC+TGG + chr8_3:4668615-4668634 Msa1271220:intron 25.0%
! CTAAATTGATAAAGAGCTAT+CGG - chr8_3:4668994-4669013 None:intergenic 25.0%
! GATAGCTCTTTATCAATTTA+GGG + chr8_3:4668993-4669012 Msa1271220:intron 25.0%
! AATGATGTTCTTAGCAAAAT+TGG + chr8_3:4669134-4669153 Msa1271220:CDS 25.0%
! TCACTTTATGCAATTCTTAA+TGG + chr8_3:4669289-4669308 Msa1271220:three_prime_UTR 25.0%
! CTTATCTAACATTTTCCACT+TGG - chr8_3:4667056-4667075 None:intergenic 30.0%
CAAGTGGAAAATGTTAGATA+AGG + chr8_3:4667054-4667073 Msa1271220:five_prime_UTR 30.0%
TGTTGTCAATTCAAGTAACA+TGG + chr8_3:4667571-4667590 Msa1271220:intron 30.0%
GAGATAACCATTACAATTAG+AGG - chr8_3:4667692-4667711 None:intergenic 30.0%
GAATAGTAACATTAAGTGTG+TGG + chr8_3:4667738-4667757 Msa1271220:intron 30.0%
TATTCTAGCATTCAGAACAT+CGG + chr8_3:4667920-4667939 Msa1271220:intron 30.0%
AATGAAAGTCTGCAATTTCT+TGG - chr8_3:4667972-4667991 None:intergenic 30.0%
AGAAATTATTGGATGGTAAC+TGG - chr8_3:4668233-4668252 None:intergenic 30.0%
TTTCTTTCAATGGTAGGTTA+AGG - chr8_3:4668323-4668342 None:intergenic 30.0%
TTAACCTACCATTGAAAGAA+AGG + chr8_3:4668322-4668341 Msa1271220:CDS 30.0%
AGTTAATGTTGTCTCAATTG+CGG + chr8_3:4668924-4668943 Msa1271220:intron 30.0%
CGATAGCTCTTTATCAATTT+AGG + chr8_3:4668992-4669011 Msa1271220:intron 30.0%
!! AAAATTTGCTATAAGCAAGC+AGG + chr8_3:4669256-4669275 Msa1271220:three_prime_UTR 30.0%
TTGCTGATAATTAGATGACT+TGG + chr8_3:4669324-4669343 Msa1271220:three_prime_UTR 30.0%
! ATGTGAAAATCAAAGCACTT+AGG - chr8_3:4669380-4669399 None:intergenic 30.0%
! TAACATTTTCCACTTGGATA+AGG - chr8_3:4667050-4667069 None:intergenic 30.0%
! CTTATCTAACATTTTCCACT+TGG - chr8_3:4667056-4667075 None:intergenic 30.0%
CAAGTGGAAAATGTTAGATA+AGG + chr8_3:4667054-4667073 Msa1271220:five_prime_UTR 30.0%
TGTTGTCAATTCAAGTAACA+TGG + chr8_3:4667571-4667590 Msa1271220:intron 30.0%
GAGATAACCATTACAATTAG+AGG - chr8_3:4667692-4667711 None:intergenic 30.0%
GAATAGTAACATTAAGTGTG+TGG + chr8_3:4667738-4667757 Msa1271220:intron 30.0%
TATTCTAGCATTCAGAACAT+CGG + chr8_3:4667920-4667939 Msa1271220:intron 30.0%
AATGAAAGTCTGCAATTTCT+TGG - chr8_3:4667972-4667991 None:intergenic 30.0%
AGAAATTATTGGATGGTAAC+TGG - chr8_3:4668233-4668252 None:intergenic 30.0%
TTTCTTTCAATGGTAGGTTA+AGG - chr8_3:4668323-4668342 None:intergenic 30.0%
TTAACCTACCATTGAAAGAA+AGG + chr8_3:4668322-4668341 Msa1271220:CDS 30.0%
AGTTAATGTTGTCTCAATTG+CGG + chr8_3:4668924-4668943 Msa1271220:intron 30.0%
CGATAGCTCTTTATCAATTT+AGG + chr8_3:4668992-4669011 Msa1271220:intron 30.0%
!! AAAATTTGCTATAAGCAAGC+AGG + chr8_3:4669256-4669275 Msa1271220:three_prime_UTR 30.0%
TTGCTGATAATTAGATGACT+TGG + chr8_3:4669324-4669343 Msa1271220:three_prime_UTR 30.0%
! ATGTGAAAATCAAAGCACTT+AGG - chr8_3:4669380-4669399 None:intergenic 30.0%
TGTTAAAGCACAACAACAAC+AGG + chr8_3:4667354-4667373 Msa1271220:CDS 35.0%
AAGAACAGCTTGAACAAAAG+AGG - chr8_3:4667431-4667450 None:intergenic 35.0%
CAAGTAACATGGTAAAACCT+TGG + chr8_3:4667582-4667601 Msa1271220:intron 35.0%
ATCATTAGATCAAGACCGAA+CGG + chr8_3:4667945-4667964 Msa1271220:intron 35.0%
GAACTTGATTCTGAATTGTC+CGG + chr8_3:4668015-4668034 Msa1271220:intron 35.0%
ATTGTCCGGTCTTGATTAAA+TGG + chr8_3:4668029-4668048 Msa1271220:intron 35.0%
AAATAGGTTTCCATGCAGTA+GGG - chr8_3:4668089-4668108 None:intergenic 35.0%
AGAACCTTTCTTTCAATGGT+AGG - chr8_3:4668329-4668348 None:intergenic 35.0%
AGGTAGAACCTTTCTTTCAA+TGG - chr8_3:4668333-4668352 None:intergenic 35.0%
! CGTAGATCATTCTGAAGATA+TGG - chr8_3:4668450-4668469 None:intergenic 35.0%
TACTTACATTGTCGATATCC+TGG - chr8_3:4668572-4668591 None:intergenic 35.0%
ACTGCAGATAATCACGTATT+TGG + chr8_3:4668657-4668676 Msa1271220:intron 35.0%
TCACGTATTTGGATTGCTTA+TGG + chr8_3:4668668-4668687 Msa1271220:intron 35.0%
CAGCAAATTGGTTGTAAAGT+TGG - chr8_3:4668840-4668859 None:intergenic 35.0%
CATTCATGTAGTCAGCAAAT+TGG - chr8_3:4668852-4668871 None:intergenic 35.0%
CAATCCAAATTCGAGAATCA+CGG + chr8_3:4668893-4668912 Msa1271220:intron 35.0%
GTTAACGACATAAAAACCCA+CGG + chr8_3:4668957-4668976 Msa1271220:intron 35.0%
! TCTTTATCAATTTAGGGCTG+TGG + chr8_3:4668999-4669018 Msa1271220:intron 35.0%
! TCTTGTGTAAGCTTTGTCTA+TGG + chr8_3:4669180-4669199 Msa1271220:three_prime_UTR 35.0%
AGAAGGTGAGAACAAAAAGA+AGG + chr8_3:4669429-4669448 Msa1271220:three_prime_UTR 35.0%
TGTTAAAGCACAACAACAAC+AGG + chr8_3:4667354-4667373 Msa1271220:CDS 35.0%
AAGAACAGCTTGAACAAAAG+AGG - chr8_3:4667431-4667450 None:intergenic 35.0%
CAAGTAACATGGTAAAACCT+TGG + chr8_3:4667582-4667601 Msa1271220:intron 35.0%
ATCATTAGATCAAGACCGAA+CGG + chr8_3:4667945-4667964 Msa1271220:intron 35.0%
GAACTTGATTCTGAATTGTC+CGG + chr8_3:4668015-4668034 Msa1271220:intron 35.0%
ATTGTCCGGTCTTGATTAAA+TGG + chr8_3:4668029-4668048 Msa1271220:intron 35.0%
AAATAGGTTTCCATGCAGTA+GGG - chr8_3:4668089-4668108 None:intergenic 35.0%
AGAACCTTTCTTTCAATGGT+AGG - chr8_3:4668329-4668348 None:intergenic 35.0%
AGGTAGAACCTTTCTTTCAA+TGG - chr8_3:4668333-4668352 None:intergenic 35.0%
! CGTAGATCATTCTGAAGATA+TGG - chr8_3:4668450-4668469 None:intergenic 35.0%
TACTTACATTGTCGATATCC+TGG - chr8_3:4668572-4668591 None:intergenic 35.0%
ACTGCAGATAATCACGTATT+TGG + chr8_3:4668657-4668676 Msa1271220:intron 35.0%
TCACGTATTTGGATTGCTTA+TGG + chr8_3:4668668-4668687 Msa1271220:intron 35.0%
CAGCAAATTGGTTGTAAAGT+TGG - chr8_3:4668840-4668859 None:intergenic 35.0%
CATTCATGTAGTCAGCAAAT+TGG - chr8_3:4668852-4668871 None:intergenic 35.0%
CAATCCAAATTCGAGAATCA+CGG + chr8_3:4668893-4668912 Msa1271220:intron 35.0%
GTTAACGACATAAAAACCCA+CGG + chr8_3:4668957-4668976 Msa1271220:intron 35.0%
! TCTTTATCAATTTAGGGCTG+TGG + chr8_3:4668999-4669018 Msa1271220:intron 35.0%
! TCTTGTGTAAGCTTTGTCTA+TGG + chr8_3:4669180-4669199 Msa1271220:three_prime_UTR 35.0%
AGAAGGTGAGAACAAAAAGA+AGG + chr8_3:4669429-4669448 Msa1271220:three_prime_UTR 35.0%
CAAAAACATGGCTCAAGCTA+TGG + chr8_3:4667195-4667214 Msa1271220:exon 40.0%
TTCATCATCTCAAGCTGTGA+TGG + chr8_3:4667243-4667262 Msa1271220:CDS 40.0%
TTCAACTGAGTGGATCAAAC+AGG + chr8_3:4667275-4667294 Msa1271220:CDS 40.0%
! AACAGGTTGAACATGTTGCA+TGG + chr8_3:4667292-4667311 Msa1271220:CDS 40.0%
AGAGGCAGTAACATATACCA+AGG - chr8_3:4667602-4667621 None:intergenic 40.0%
AATTCGGAGTACATGCAGTT+AGG + chr8_3:4667889-4667908 Msa1271220:intron 40.0%
ATTCGGAGTACATGCAGTTA+GGG + chr8_3:4667890-4667909 Msa1271220:intron 40.0%
! GGTTGCCATTTAATCAAGAC+CGG - chr8_3:4668037-4668056 None:intergenic 40.0%
TGGCAACCGATGTTCTTAAT+AGG + chr8_3:4668049-4668068 Msa1271220:intron 40.0%
GAAATAGGTTTCCATGCAGT+AGG - chr8_3:4668090-4668109 None:intergenic 40.0%
GATTTATGGAATTTGGCAGC+TGG + chr8_3:4668270-4668289 Msa1271220:intron 40.0%
AGTTCATAGACCAGAAAGCT+TGG + chr8_3:4668424-4668443 Msa1271220:CDS 40.0%
! TTGCAGAGATGATGGTGTTA+AGG - chr8_3:4668500-4668519 None:intergenic 40.0%
!!! AGGGATTTTTTCTGGTCCTT+TGG - chr8_3:4668525-4668544 None:intergenic 40.0%
!!! GTTCCTTGAGGGATTTTTTC+TGG - chr8_3:4668533-4668552 None:intergenic 40.0%
ATCTGCAGTCTCAAGAACTT+CGG - chr8_3:4668646-4668665 None:intergenic 40.0%
TTGACCGTGATTCTCGAATT+TGG - chr8_3:4668900-4668919 None:intergenic 40.0%
! ATTTAGGGCTGTGGAAAGAT+TGG + chr8_3:4669008-4669027 Msa1271220:intron 40.0%
! TTTTCTTCTTTGTTCCCAGC+TGG + chr8_3:4669043-4669062 Msa1271220:intron 40.0%
! TTTTGCTGCATAATCCAGCT+GGG - chr8_3:4669060-4669079 None:intergenic 40.0%
TAGTACTTCTCTGCATCTGA+GGG - chr8_3:4669092-4669111 None:intergenic 40.0%
ATAGTACTTCTCTGCATCTG+AGG - chr8_3:4669093-4669112 None:intergenic 40.0%
CAAAAACATGGCTCAAGCTA+TGG + chr8_3:4667195-4667214 Msa1271220:exon 40.0%
TTCATCATCTCAAGCTGTGA+TGG + chr8_3:4667243-4667262 Msa1271220:CDS 40.0%
TTCAACTGAGTGGATCAAAC+AGG + chr8_3:4667275-4667294 Msa1271220:CDS 40.0%
! AACAGGTTGAACATGTTGCA+TGG + chr8_3:4667292-4667311 Msa1271220:CDS 40.0%
AGAGGCAGTAACATATACCA+AGG - chr8_3:4667602-4667621 None:intergenic 40.0%
AATTCGGAGTACATGCAGTT+AGG + chr8_3:4667889-4667908 Msa1271220:intron 40.0%
ATTCGGAGTACATGCAGTTA+GGG + chr8_3:4667890-4667909 Msa1271220:intron 40.0%
! GGTTGCCATTTAATCAAGAC+CGG - chr8_3:4668037-4668056 None:intergenic 40.0%
TGGCAACCGATGTTCTTAAT+AGG + chr8_3:4668049-4668068 Msa1271220:intron 40.0%
GAAATAGGTTTCCATGCAGT+AGG - chr8_3:4668090-4668109 None:intergenic 40.0%
GATTTATGGAATTTGGCAGC+TGG + chr8_3:4668270-4668289 Msa1271220:intron 40.0%
AGTTCATAGACCAGAAAGCT+TGG + chr8_3:4668424-4668443 Msa1271220:CDS 40.0%
! TTGCAGAGATGATGGTGTTA+AGG - chr8_3:4668500-4668519 None:intergenic 40.0%
!!! AGGGATTTTTTCTGGTCCTT+TGG - chr8_3:4668525-4668544 None:intergenic 40.0%
!!! GTTCCTTGAGGGATTTTTTC+TGG - chr8_3:4668533-4668552 None:intergenic 40.0%
ATCTGCAGTCTCAAGAACTT+CGG - chr8_3:4668646-4668665 None:intergenic 40.0%
TTGACCGTGATTCTCGAATT+TGG - chr8_3:4668900-4668919 None:intergenic 40.0%
! ATTTAGGGCTGTGGAAAGAT+TGG + chr8_3:4669008-4669027 Msa1271220:intron 40.0%
! TTTTCTTCTTTGTTCCCAGC+TGG + chr8_3:4669043-4669062 Msa1271220:intron 40.0%
! TTTTGCTGCATAATCCAGCT+GGG - chr8_3:4669060-4669079 None:intergenic 40.0%
TAGTACTTCTCTGCATCTGA+GGG - chr8_3:4669092-4669111 None:intergenic 40.0%
ATAGTACTTCTCTGCATCTG+AGG - chr8_3:4669093-4669112 None:intergenic 40.0%
! TCATCTCAAGCTGTGATGGA+AGG + chr8_3:4667247-4667266 Msa1271220:CDS 45.0%
GAAGGAAGTCTTCAACTGAG+TGG + chr8_3:4667265-4667284 Msa1271220:CDS 45.0%
GCATGGTAGCAACAGTAACA+AGG + chr8_3:4667309-4667328 Msa1271220:CDS 45.0%
!! TGGTCTTGTTGCAACTGGTT+TGG + chr8_3:4667399-4667418 Msa1271220:CDS 45.0%
TGTTCAAGCTGTTCTTGCTG+AGG + chr8_3:4667435-4667454 Msa1271220:CDS 45.0%
GAGGCCATTCCCATTAAAGT+TGG + chr8_3:4667454-4667473 Msa1271220:CDS 45.0%
GCCATTCCCATTAAAGTTGG+TGG + chr8_3:4667457-4667476 Msa1271220:CDS 45.0%
GCCACCAACTTTAATGGGAA+TGG - chr8_3:4667461-4667480 None:intergenic 45.0%
GAGTACACACACACACAACA+TGG + chr8_3:4667840-4667859 Msa1271220:intron 45.0%
CTGCAATTTCTTGGACCGTT+CGG - chr8_3:4667963-4667982 None:intergenic 45.0%
!! CAGTTGGTGTCAATGGTTGA+AGG - chr8_3:4668353-4668372 None:intergenic 45.0%
TCAACCATTGACACCAACTG+AGG + chr8_3:4668353-4668372 Msa1271220:CDS 45.0%
GAAGATATGGCCAAGCTTTC+TGG - chr8_3:4668437-4668456 None:intergenic 45.0%
AATGATCTACGTCTCAGAGC+TGG + chr8_3:4668459-4668478 Msa1271220:CDS 45.0%
!! CTTTGGCTTTGCAGAGATGA+TGG - chr8_3:4668508-4668527 None:intergenic 45.0%
CATCATCTCTGCAAAGCCAA+AGG + chr8_3:4668506-4668525 Msa1271220:CDS 45.0%
GGACCAGAAAAAATCCCTCA+AGG + chr8_3:4668527-4668546 Msa1271220:CDS 45.0%
AAATCCCTCAAGGAACTCAC+CGG + chr8_3:4668537-4668556 Msa1271220:CDS 45.0%
GATATCCTGGAAGAGCTTTC+CGG - chr8_3:4668559-4668578 None:intergenic 45.0%
TCATGCAGTCAGCACATTTG+TGG + chr8_3:4668707-4668726 Msa1271220:intron 45.0%
GTCAGCACATTTGTGGTTGA+TGG + chr8_3:4668714-4668733 Msa1271220:intron 45.0%
!! TGTGGTTGATGGATCGAGAT+TGG + chr8_3:4668725-4668744 Msa1271220:intron 45.0%
TCTCGAATTTGGATTGCCTG+CGG - chr8_3:4668889-4668908 None:intergenic 45.0%
! CTTTTGCTGCATAATCCAGC+TGG - chr8_3:4669061-4669080 None:intergenic 45.0%
AGTACTTCTCTGCATCTGAG+GGG - chr8_3:4669091-4669110 None:intergenic 45.0%
! TCATCTCAAGCTGTGATGGA+AGG + chr8_3:4667247-4667266 Msa1271220:CDS 45.0%
GAAGGAAGTCTTCAACTGAG+TGG + chr8_3:4667265-4667284 Msa1271220:CDS 45.0%
GCATGGTAGCAACAGTAACA+AGG + chr8_3:4667309-4667328 Msa1271220:CDS 45.0%
!! TGGTCTTGTTGCAACTGGTT+TGG + chr8_3:4667399-4667418 Msa1271220:CDS 45.0%
TGTTCAAGCTGTTCTTGCTG+AGG + chr8_3:4667435-4667454 Msa1271220:CDS 45.0%
GAGGCCATTCCCATTAAAGT+TGG + chr8_3:4667454-4667473 Msa1271220:CDS 45.0%
GCCATTCCCATTAAAGTTGG+TGG + chr8_3:4667457-4667476 Msa1271220:CDS 45.0%
GCCACCAACTTTAATGGGAA+TGG - chr8_3:4667461-4667480 None:intergenic 45.0%
GAGTACACACACACACAACA+TGG + chr8_3:4667840-4667859 Msa1271220:intron 45.0%
CTGCAATTTCTTGGACCGTT+CGG - chr8_3:4667963-4667982 None:intergenic 45.0%
!! CAGTTGGTGTCAATGGTTGA+AGG - chr8_3:4668353-4668372 None:intergenic 45.0%
TCAACCATTGACACCAACTG+AGG + chr8_3:4668353-4668372 Msa1271220:CDS 45.0%
GAAGATATGGCCAAGCTTTC+TGG - chr8_3:4668437-4668456 None:intergenic 45.0%
AATGATCTACGTCTCAGAGC+TGG + chr8_3:4668459-4668478 Msa1271220:CDS 45.0%
!! CTTTGGCTTTGCAGAGATGA+TGG - chr8_3:4668508-4668527 None:intergenic 45.0%
CATCATCTCTGCAAAGCCAA+AGG + chr8_3:4668506-4668525 Msa1271220:CDS 45.0%
GGACCAGAAAAAATCCCTCA+AGG + chr8_3:4668527-4668546 Msa1271220:CDS 45.0%
AAATCCCTCAAGGAACTCAC+CGG + chr8_3:4668537-4668556 Msa1271220:CDS 45.0%
GATATCCTGGAAGAGCTTTC+CGG - chr8_3:4668559-4668578 None:intergenic 45.0%
TCATGCAGTCAGCACATTTG+TGG + chr8_3:4668707-4668726 Msa1271220:intron 45.0%
GTCAGCACATTTGTGGTTGA+TGG + chr8_3:4668714-4668733 Msa1271220:intron 45.0%
!! TGTGGTTGATGGATCGAGAT+TGG + chr8_3:4668725-4668744 Msa1271220:intron 45.0%
TCTCGAATTTGGATTGCCTG+CGG - chr8_3:4668889-4668908 None:intergenic 45.0%
! CTTTTGCTGCATAATCCAGC+TGG - chr8_3:4669061-4669080 None:intergenic 45.0%
AGTACTTCTCTGCATCTGAG+GGG - chr8_3:4669091-4669110 None:intergenic 45.0%
GGCTCAAGCTATGGCTTCAA+TGG + chr8_3:4667204-4667223 Msa1271220:CDS 50.0%
CAAGCTATGGCTTCAATGGC+TGG + chr8_3:4667208-4667227 Msa1271220:CDS 50.0%
! TCAATGGCTGGTTGCTTACG+TGG + chr8_3:4667220-4667239 Msa1271220:CDS 50.0%
AGTAGCAGAAGAGCAGTGCT+TGG + chr8_3:4667379-4667398 Msa1271220:CDS 50.0%
!! GTGCTTGGTCTTGTTGCAAC+TGG + chr8_3:4667394-4667413 Msa1271220:CDS 50.0%
GGAGGGCCACCAACTTTAAT+GGG - chr8_3:4667466-4667485 None:intergenic 50.0%
AGGAGGGCCACCAACTTTAA+TGG - chr8_3:4667467-4667486 None:intergenic 50.0%
TACTTACGAAGGCCACCAGA+AGG - chr8_3:4667493-4667512 None:intergenic 50.0%
TACGGTGAATCCCTACTGCA+TGG + chr8_3:4668076-4668095 Msa1271220:intron 50.0%
GTCTCAGAGCTGGCTATCTT+CGG + chr8_3:4668469-4668488 Msa1271220:CDS 50.0%
CTTTCCGGTGAGTTCCTTGA+GGG - chr8_3:4668544-4668563 None:intergenic 50.0%
GGCTCAAGCTATGGCTTCAA+TGG + chr8_3:4667204-4667223 Msa1271220:CDS 50.0%
CAAGCTATGGCTTCAATGGC+TGG + chr8_3:4667208-4667227 Msa1271220:CDS 50.0%
! TCAATGGCTGGTTGCTTACG+TGG + chr8_3:4667220-4667239 Msa1271220:CDS 50.0%
AGTAGCAGAAGAGCAGTGCT+TGG + chr8_3:4667379-4667398 Msa1271220:CDS 50.0%
!! GTGCTTGGTCTTGTTGCAAC+TGG + chr8_3:4667394-4667413 Msa1271220:CDS 50.0%
GGAGGGCCACCAACTTTAAT+GGG - chr8_3:4667466-4667485 None:intergenic 50.0%
AGGAGGGCCACCAACTTTAA+TGG - chr8_3:4667467-4667486 None:intergenic 50.0%
TACTTACGAAGGCCACCAGA+AGG - chr8_3:4667493-4667512 None:intergenic 50.0%
TACGGTGAATCCCTACTGCA+TGG + chr8_3:4668076-4668095 Msa1271220:intron 50.0%
GTCTCAGAGCTGGCTATCTT+CGG + chr8_3:4668469-4668488 Msa1271220:CDS 50.0%
CTTTCCGGTGAGTTCCTTGA+GGG - chr8_3:4668544-4668563 None:intergenic 50.0%
TTACGAAGGCCACCAGAAGG+TGG - chr8_3:4667490-4667509 None:intergenic 55.0%
!! GCTGCCTCAGTTGGTGTCAA+TGG - chr8_3:4668360-4668379 None:intergenic 55.0%
TGAGGCAGCTGCAAGAGCTA+AGG + chr8_3:4668371-4668390 Msa1271220:CDS 55.0%
GCTTTCCGGTGAGTTCCTTG+AGG - chr8_3:4668545-4668564 None:intergenic 55.0%
ACTCACCGGAAAGCTCTTCC+AGG + chr8_3:4668551-4668570 Msa1271220:CDS 55.0%
!! GTGCTGACTGCATGAATGCG+TGG - chr8_3:4668702-4668721 None:intergenic 55.0%
TGCATGAGATTGCTAGCCGC+AGG + chr8_3:4668870-4668889 Msa1271220:intron 55.0%
TCTCAATTGCGGTCACGCTG+TGG + chr8_3:4668935-4668954 Msa1271220:intron 55.0%
ATCGGATTACGCAGCACCGT+GGG - chr8_3:4668976-4668995 None:intergenic 55.0%
TATCGGATTACGCAGCACCG+TGG - chr8_3:4668977-4668996 None:intergenic 55.0%
TTACGAAGGCCACCAGAAGG+TGG - chr8_3:4667490-4667509 None:intergenic 55.0%
!! GCTGCCTCAGTTGGTGTCAA+TGG - chr8_3:4668360-4668379 None:intergenic 55.0%
TGAGGCAGCTGCAAGAGCTA+AGG + chr8_3:4668371-4668390 Msa1271220:CDS 55.0%
GCTTTCCGGTGAGTTCCTTG+AGG - chr8_3:4668545-4668564 None:intergenic 55.0%
ACTCACCGGAAAGCTCTTCC+AGG + chr8_3:4668551-4668570 Msa1271220:CDS 55.0%
!! GTGCTGACTGCATGAATGCG+TGG - chr8_3:4668702-4668721 None:intergenic 55.0%
TGCATGAGATTGCTAGCCGC+AGG + chr8_3:4668870-4668889 Msa1271220:intron 55.0%
TCTCAATTGCGGTCACGCTG+TGG + chr8_3:4668935-4668954 Msa1271220:intron 55.0%
ATCGGATTACGCAGCACCGT+GGG - chr8_3:4668976-4668995 None:intergenic 55.0%
TATCGGATTACGCAGCACCG+TGG - chr8_3:4668977-4668996 None:intergenic 55.0%
GCTCTTGCAGCTGCCTCAGT+TGG - chr8_3:4668369-4668388 None:intergenic 60.0%
GCTCTTGCAGCTGCCTCAGT+TGG - chr8_3:4668369-4668388 None:intergenic 60.0%
GGCCACCAGAAGGTGGAGGA+GGG - chr8_3:4667483-4667502 None:intergenic 65.0%
AGGCCACCAGAAGGTGGAGG+AGG - chr8_3:4667484-4667503 None:intergenic 65.0%
CGAAGGCCACCAGAAGGTGG+AGG - chr8_3:4667487-4667506 None:intergenic 65.0%
GGCCACCAGAAGGTGGAGGA+GGG - chr8_3:4667483-4667502 None:intergenic 65.0%
AGGCCACCAGAAGGTGGAGG+AGG - chr8_3:4667484-4667503 None:intergenic 65.0%
CGAAGGCCACCAGAAGGTGG+AGG - chr8_3:4667487-4667506 None:intergenic 65.0%
GGTGGCCCTCCTCCACCTTC+TGG + chr8_3:4667475-4667494 Msa1271220:CDS 70.0%
GGCCCTCCTCCACCTTCTGG+TGG + chr8_3:4667478-4667497 Msa1271220:CDS 70.0%
GGTGGCCCTCCTCCACCTTC+TGG + chr8_3:4667475-4667494 Msa1271220:CDS 70.0%
GGCCCTCCTCCACCTTCTGG+TGG + chr8_3:4667478-4667497 Msa1271220:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 4667048 4669462 4667048 ID=Msa1271220;Name=Msa1271220
chr8_3 mRNA 4667048 4669462 4667048 ID=Msa1271220-mRNA-1;Parent=Msa1271220;Name=Msa1271220-mRNA-1;_AED=0.08;_eAED=0.08;_QI=154|1|1|1|1|1|3|302|232
chr8_3 exon 4667048 4667505 4667048 ID=Msa1271220-mRNA-1:exon:1603;Parent=Msa1271220-mRNA-1
chr8_3 exon 4668289 4668584 4668289 ID=Msa1271220-mRNA-1:exon:1604;Parent=Msa1271220-mRNA-1
chr8_3 exon 4669062 4669462 4669062 ID=Msa1271220-mRNA-1:exon:1605;Parent=Msa1271220-mRNA-1
chr8_3 five_prime_UTR 4667048 4667201 4667048 ID=Msa1271220-mRNA-1:five_prime_utr;Parent=Msa1271220-mRNA-1
chr8_3 CDS 4667202 4667505 4667202 ID=Msa1271220-mRNA-1:cds;Parent=Msa1271220-mRNA-1
chr8_3 CDS 4668289 4668584 4668289 ID=Msa1271220-mRNA-1:cds;Parent=Msa1271220-mRNA-1
chr8_3 CDS 4669062 4669160 4669062 ID=Msa1271220-mRNA-1:cds;Parent=Msa1271220-mRNA-1
chr8_3 three_prime_UTR 4669161 4669462 4669161 ID=Msa1271220-mRNA-1:three_prime_utr;Parent=Msa1271220-mRNA-1
Gene Sequence

>Msa1271220

ATGGCTCAAGCTATGGCTTCAATGGCTGGTTGCTTACGTGGTTCATCATCTCAAGCTGTGATGGAAGGAAGTCTTCAACTGAGTGGATCAAACAGGTTGAACATGTTGCATGGTAGCAACAGTAACAAGGTTACACGTTCATCAGTGACAGTTGTTAAAGCACAACAACAACAGGAAAGTAGCAGAAGAGCAGTGCTTGGTCTTGTTGCAACTGGTTTGGTTTCTTCCTCTTTTGTTCAAGCTGTTCTTGCTGAGGCCATTCCCATTAAAGTTGGTGGCCCTCCTCCACCTTCTGGTGGCCTTCCTGGAACACTGAACTCAGATGAAGCAAGAGACCTTAACCTACCATTGAAAGAAAGGTTCTACCTTCAACCATTGACACCAACTGAGGCAGCTGCAAGAGCTAAGGAGTCAGCAAAAGAAATTGTTGCTGCTAAGAAGTTCATAGACCAGAAAGCTTGGCCATATCTTCAGAATGATCTACGTCTCAGAGCTGGCTATCTTCGGTATGACCTTAACACCATCATCTCTGCAAAGCCAAAGGACCAGAAAAAATCCCTCAAGGAACTCACCGGAAAGCTCTTCCAGGATATCGACAATCTGGATTATGCAGCAAAAGTTAAGAGCCCCTCAGATGCAGAGAAGTACTATGCTATAGCTGTATCTACTCTGAATGATGTTCTTAGCAAAATTGGTTAA

Protein sequence

>Msa1271220

MAQAMASMAGCLRGSSSQAVMEGSLQLSGSNRLNMLHGSNSNKVTRSSVTVVKAQQQQESSRRAVLGLVATGLVSSSFVQAVLAEAIPIKVGGPPPPSGGLPGTLNSDEARDLNLPLKERFYLQPLTPTEAAARAKESAKEIVAAKKFIDQKAWPYLQNDLRLRAGYLRYDLNTIISAKPKDQKKSLKELTGKLFQDIDNLDYAAKVKSPSDAEKYYAIAVSTLNDVLSKIG*