AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1228260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228260 MtrunA17_Chr8g0335111 98.276 232 4 0 1 232 1 232 1.25e-168 464
Msa1228260 MtrunA17_Chr3g0109401 29.524 105 74 0 127 231 73 177 2.14e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228260 AT4G05180.2 69.362 235 64 4 1 232 1 230 1.04e-110 317
Msa1228260 AT4G05180.1 69.362 235 64 4 1 232 1 230 1.04e-110 317
Msa1228260 AT4G21280.1 69.737 228 64 3 5 232 1 223 1.94e-105 304
Msa1228260 AT4G21280.2 69.432 229 64 4 5 232 1 224 1.27e-103 299
Msa1228260 AT3G01440.1 25.989 177 119 4 61 231 49 219 8.66e-11 60.1

Find 63 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATATGGCCAAGCTTTC+TGG 0.130603 8_2:+3745000 None:intergenic
TCACTTTATGCAATTCTTAA+TGG 0.159194 8_2:-3744145 Msa1228260:three_prime_UTR
AATGATGTTCTTAGCAAAAT+TGG 0.209646 8_2:-3744300 Msa1228260:CDS
GGTGGCCCTCCTCCACCTTC+TGG 0.276244 8_2:-3745961 Msa1228260:CDS
TCTTGTGTAAGCTTTGTCTA+TGG 0.296268 8_2:-3744254 Msa1228260:three_prime_UTR
GATATCCTGGAAGAGCTTTC+CGG 0.325246 8_2:+3744878 None:intergenic
AGGAGGGCCACCAACTTTAA+TGG 0.339587 8_2:+3745972 None:intergenic
CGTAGATCATTCTGAAGATA+TGG 0.365781 8_2:+3744987 None:intergenic
GTGCTTGGTCTTGTTGCAAC+TGG 0.375439 8_2:-3746042 Msa1228260:CDS
CTTTGGCTTTGCAGAGATGA+TGG 0.383227 8_2:+3744929 None:intergenic
TGGTCTTGTTGCAACTGGTT+TGG 0.399632 8_2:-3746037 Msa1228260:CDS
ACTCACCGGAAAGCTCTTCC+AGG 0.411588 8_2:-3744883 Msa1228260:CDS
TTTCTTTCAATGGTAGGTTA+AGG 0.416462 8_2:+3745114 None:intergenic
CAAGCTATGGCTTCAATGGC+TGG 0.420548 8_2:-3746228 Msa1228260:CDS
TAAAGAAGTAATGGATGAAA+AGG 0.422031 8_2:+3746308 None:intergenic
GGCTCAAGCTATGGCTTCAA+TGG 0.429116 8_2:-3746232 Msa1228260:CDS
GGAGGGCCACCAACTTTAAT+GGG 0.432194 8_2:+3745973 None:intergenic
TGTTAAAGCACAACAACAAC+AGG 0.432911 8_2:-3746082 Msa1228260:CDS
TTAACCTACCATTGAAAGAA+AGG 0.436888 8_2:-3745112 Msa1228260:CDS
TTGCAGAGATGATGGTGTTA+AGG 0.438783 8_2:+3744937 None:intergenic
GCTGCCTCAGTTGGTGTCAA+TGG 0.441161 8_2:+3745077 None:intergenic
AGGTAGAACCTTTCTTTCAA+TGG 0.442299 8_2:+3745104 None:intergenic
CTTTCCGGTGAGTTCCTTGA+GGG 0.450519 8_2:+3744893 None:intergenic
GTCTCAGAGCTGGCTATCTT+CGG 0.456619 8_2:-3744965 Msa1228260:CDS
GCTCTTGCAGCTGCCTCAGT+TGG 0.457785 8_2:+3745068 None:intergenic
GCCATTCCCATTAAAGTTGG+TGG 0.462320 8_2:-3745979 Msa1228260:CDS
TACTTACATTGTCGATATCC+TGG 0.468976 8_2:+3744865 None:intergenic
AGGCCACCAGAAGGTGGAGG+AGG 0.471417 8_2:+3745955 None:intergenic
GGCCCTCCTCCACCTTCTGG+TGG 0.478722 8_2:-3745958 Msa1228260:CDS
CAAGTGGAAAATGTTAGATA+AGG 0.506588 8_2:-3746382 Msa1228260:five_prime_UTR
AGAACCTTTCTTTCAATGGT+AGG 0.507585 8_2:+3745108 None:intergenic
TGAGGCAGCTGCAAGAGCTA+AGG 0.508030 8_2:-3745063 Msa1228260:CDS
GCCACCAACTTTAATGGGAA+TGG 0.510062 8_2:+3745978 None:intergenic
TTCAACTGAGTGGATCAAAC+AGG 0.511674 8_2:-3746161 Msa1228260:CDS
TGTTCAAGCTGTTCTTGCTG+AGG 0.514649 8_2:-3746001 Msa1228260:CDS
TCAATGGCTGGTTGCTTACG+TGG 0.518584 8_2:-3746216 Msa1228260:CDS
AAGAACAGCTTGAACAAAAG+AGG 0.520210 8_2:+3746008 None:intergenic
TTCATCATCTCAAGCTGTGA+TGG 0.526246 8_2:-3746193 Msa1228260:CDS
GAGGCCATTCCCATTAAAGT+TGG 0.533037 8_2:-3745982 Msa1228260:CDS
AAAATTTGCTATAAGCAAGC+AGG 0.535603 8_2:-3744178 Msa1228260:three_prime_UTR
AGTAGCAGAAGAGCAGTGCT+TGG 0.543090 8_2:-3746057 Msa1228260:CDS
AATGATCTACGTCTCAGAGC+TGG 0.548338 8_2:-3744975 Msa1228260:CDS
TAGTACTTCTCTGCATCTGA+GGG 0.548759 8_2:+3744345 None:intergenic
AGTTCATAGACCAGAAAGCT+TGG 0.554807 8_2:-3745010 Msa1228260:CDS
TTATGACAATAAAGAAGTAA+TGG 0.556661 8_2:+3746299 None:intergenic
GGCCACCAGAAGGTGGAGGA+GGG 0.557926 8_2:+3745956 None:intergenic
TTGCTGATAATTAGATGACT+TGG 0.566702 8_2:-3744110 Msa1228260:three_prime_UTR
CAGTTGGTGTCAATGGTTGA+AGG 0.570020 8_2:+3745084 None:intergenic
ATGTGAAAATCAAAGCACTT+AGG 0.573292 8_2:+3744057 None:intergenic
ATAGTACTTCTCTGCATCTG+AGG 0.575292 8_2:+3744344 None:intergenic
TCATCTCAAGCTGTGATGGA+AGG 0.586825 8_2:-3746189 Msa1228260:CDS
CGAAGGCCACCAGAAGGTGG+AGG 0.590512 8_2:+3745952 None:intergenic
AAATCCCTCAAGGAACTCAC+CGG 0.605407 8_2:-3744897 Msa1228260:CDS
GCTTTCCGGTGAGTTCCTTG+AGG 0.616393 8_2:+3744892 None:intergenic
CATGATCCAACTTATCCAAG+TGG 0.618047 8_2:-3746398 None:intergenic
TTACGAAGGCCACCAGAAGG+TGG 0.625990 8_2:+3745949 None:intergenic
AACAGGTTGAACATGTTGCA+TGG 0.626500 8_2:-3746144 Msa1228260:CDS
CATCATCTCTGCAAAGCCAA+AGG 0.627597 8_2:-3744928 Msa1228260:CDS
GCATGGTAGCAACAGTAACA+AGG 0.637680 8_2:-3746127 Msa1228260:CDS
TACTTACGAAGGCCACCAGA+AGG 0.643651 8_2:+3745946 None:intergenic
GAAGGAAGTCTTCAACTGAG+TGG 0.680495 8_2:-3746171 Msa1228260:CDS
AGTACTTCTCTGCATCTGAG+GGG 0.682536 8_2:+3744346 None:intergenic
TCAACCATTGACACCAACTG+AGG 0.698559 8_2:-3745081 Msa1228260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACATTTATTAAGAATGA+TGG - chr8_2:3744591-3744610 Msa1228260:intron 15.0%
!!! TATACAATATTACATTTTCA+AGG - chr8_2:3745538-3745557 Msa1228260:intron 15.0%
!!! TTGTTTTTATTGTTTTAAGA+AGG - chr8_2:3746360-3746379 Msa1228260:five_prime_UTR 15.0%
!! TTTACATTTATTAAGAATGA+TGG - chr8_2:3744591-3744610 Msa1228260:intron 15.0%
!!! TATACAATATTACATTTTCA+AGG - chr8_2:3745538-3745557 Msa1228260:intron 15.0%
!!! TTGTTTTTATTGTTTTAAGA+AGG - chr8_2:3746360-3746379 Msa1228260:five_prime_UTR 15.0%
!! TTATGACAATAAAGAAGTAA+TGG + chr8_2:3744086-3744105 None:intergenic 20.0%
!! TTAAATATGAATACTTACGA+AGG + chr8_2:3744450-3744469 None:intergenic 20.0%
!!! TATTTTACCTCTAATTGTAA+TGG - chr8_2:3744628-3744647 Msa1228260:intron 20.0%
!! AAAAAAATGACTAAATTTGC+TGG + chr8_2:3744742-3744761 None:intergenic 20.0%
!!! ATGATATTGCTATTTGAATT+CGG - chr8_2:3744819-3744838 Msa1228260:intron 20.0%
!! TTACAAGAAAAGAAAGAAAT+AGG + chr8_2:3745053-3745072 None:intergenic 20.0%
!!! TTCAACATTCTAGAAATTAT+TGG + chr8_2:3745192-3745211 None:intergenic 20.0%
!!! ATGTTGAATTAACTGATTTA+TGG - chr8_2:3745204-3745223 Msa1228260:intron 20.0%
!!! ATTAACTGATTTATGGAATT+TGG - chr8_2:3745211-3745230 Msa1228260:intron 20.0%
!! TAAATATCGATCTTAAAATC+AGG + chr8_2:3745704-3745723 None:intergenic 20.0%
!! TTATGACAATAAAGAAGTAA+TGG + chr8_2:3744086-3744105 None:intergenic 20.0%
!! TTAAATATGAATACTTACGA+AGG + chr8_2:3744450-3744469 None:intergenic 20.0%
!!! TATTTTACCTCTAATTGTAA+TGG - chr8_2:3744628-3744647 Msa1228260:intron 20.0%
!! AAAAAAATGACTAAATTTGC+TGG + chr8_2:3744742-3744761 None:intergenic 20.0%
!!! ATGATATTGCTATTTGAATT+CGG - chr8_2:3744819-3744838 Msa1228260:intron 20.0%
!! TTACAAGAAAAGAAAGAAAT+AGG + chr8_2:3745053-3745072 None:intergenic 20.0%
!!! TTCAACATTCTAGAAATTAT+TGG + chr8_2:3745192-3745211 None:intergenic 20.0%
!!! ATGTTGAATTAACTGATTTA+TGG - chr8_2:3745204-3745223 Msa1228260:intron 20.0%
!!! ATTAACTGATTTATGGAATT+TGG - chr8_2:3745211-3745230 Msa1228260:intron 20.0%
!! TAAATATCGATCTTAAAATC+AGG + chr8_2:3745704-3745723 None:intergenic 20.0%
!!! TAAAGAAGTAATGGATGAAA+AGG + chr8_2:3744077-3744096 None:intergenic 25.0%
! TACAAAGAAAGTCAAAAACA+TGG - chr8_2:3744129-3744148 Msa1228260:three_prime_UTR 25.0%
! GTATTTATATTTGAGTCAAG+AGG + chr8_2:3744566-3744585 None:intergenic 25.0%
! TATTCTCCTATTAAGAACAT+CGG + chr8_2:3745006-3745025 None:intergenic 25.0%
! ATGTTCTTAATAGGAGAATA+CGG - chr8_2:3745006-3745025 Msa1228260:CDS 25.0%
!! ACATTCTAGAAATTATTGGA+TGG + chr8_2:3745188-3745207 None:intergenic 25.0%
!!! TAAATTTGTTGTTGTAGTAC+TGG - chr8_2:3745563-3745582 Msa1228260:intron 25.0%
! CTAAATTGATAAAGAGCTAT+CGG + chr8_2:3745942-3745961 None:intergenic 25.0%
! GATAGCTCTTTATCAATTTA+GGG - chr8_2:3745941-3745960 Msa1228260:intron 25.0%
! AATGATGTTCTTAGCAAAAT+TGG - chr8_2:3746082-3746101 Msa1228260:CDS 25.0%
! TCACTTTATGCAATTCTTAA+TGG - chr8_2:3746237-3746256 Msa1228260:CDS 25.0%
!!! TAAAGAAGTAATGGATGAAA+AGG + chr8_2:3744077-3744096 None:intergenic 25.0%
! TACAAAGAAAGTCAAAAACA+TGG - chr8_2:3744129-3744148 Msa1228260:three_prime_UTR 25.0%
! GTATTTATATTTGAGTCAAG+AGG + chr8_2:3744566-3744585 None:intergenic 25.0%
! TATTCTCCTATTAAGAACAT+CGG + chr8_2:3745006-3745025 None:intergenic 25.0%
! ATGTTCTTAATAGGAGAATA+CGG - chr8_2:3745006-3745025 Msa1228260:CDS 25.0%
!! ACATTCTAGAAATTATTGGA+TGG + chr8_2:3745188-3745207 None:intergenic 25.0%
!!! TAAATTTGTTGTTGTAGTAC+TGG - chr8_2:3745563-3745582 Msa1228260:intron 25.0%
! CTAAATTGATAAAGAGCTAT+CGG + chr8_2:3745942-3745961 None:intergenic 25.0%
! GATAGCTCTTTATCAATTTA+GGG - chr8_2:3745941-3745960 Msa1228260:intron 25.0%
! AATGATGTTCTTAGCAAAAT+TGG - chr8_2:3746082-3746101 Msa1228260:CDS 25.0%
! TCACTTTATGCAATTCTTAA+TGG - chr8_2:3746237-3746256 Msa1228260:CDS 25.0%
! CTTATCTAACATTTTCCACT+TGG + chr8_2:3744002-3744021 None:intergenic 30.0%
CAAGTGGAAAATGTTAGATA+AGG - chr8_2:3744000-3744019 Msa1228260:three_prime_UTR 30.0%
TGTTGTCAATTCAAGTAACA+TGG - chr8_2:3744517-3744536 Msa1228260:intron 30.0%
GAGATAACCATTACAATTAG+AGG + chr8_2:3744638-3744657 None:intergenic 30.0%
GAATAGTAACATTAAGTGTG+TGG - chr8_2:3744684-3744703 Msa1228260:intron 30.0%
TATTCTAGCATTCAGAACAT+CGG - chr8_2:3744868-3744887 Msa1228260:intron 30.0%
AATGAAAGTCTGCAATTTCT+TGG + chr8_2:3744920-3744939 None:intergenic 30.0%
AGAAATTATTGGATGGTAAC+TGG + chr8_2:3745181-3745200 None:intergenic 30.0%
TTTCTTTCAATGGTAGGTTA+AGG + chr8_2:3745271-3745290 None:intergenic 30.0%
TTAACCTACCATTGAAAGAA+AGG - chr8_2:3745270-3745289 Msa1228260:intron 30.0%
AGTTAATGTTGTCTCAATTG+CGG - chr8_2:3745872-3745891 Msa1228260:intron 30.0%
CGATAGCTCTTTATCAATTT+AGG - chr8_2:3745940-3745959 Msa1228260:intron 30.0%
!! AAAATTTGCTATAAGCAAGC+AGG - chr8_2:3746204-3746223 Msa1228260:CDS 30.0%
TTGCTGATAATTAGATGACT+TGG - chr8_2:3746272-3746291 Msa1228260:five_prime_UTR 30.0%
! ATGTGAAAATCAAAGCACTT+AGG + chr8_2:3746328-3746347 None:intergenic 30.0%
! TAACATTTTCCACTTGGATA+AGG + chr8_2:3743996-3744015 None:intergenic 30.0%
! CTTATCTAACATTTTCCACT+TGG + chr8_2:3744002-3744021 None:intergenic 30.0%
CAAGTGGAAAATGTTAGATA+AGG - chr8_2:3744000-3744019 Msa1228260:three_prime_UTR 30.0%
TGTTGTCAATTCAAGTAACA+TGG - chr8_2:3744517-3744536 Msa1228260:intron 30.0%
GAGATAACCATTACAATTAG+AGG + chr8_2:3744638-3744657 None:intergenic 30.0%
GAATAGTAACATTAAGTGTG+TGG - chr8_2:3744684-3744703 Msa1228260:intron 30.0%
TATTCTAGCATTCAGAACAT+CGG - chr8_2:3744868-3744887 Msa1228260:intron 30.0%
AATGAAAGTCTGCAATTTCT+TGG + chr8_2:3744920-3744939 None:intergenic 30.0%
AGAAATTATTGGATGGTAAC+TGG + chr8_2:3745181-3745200 None:intergenic 30.0%
TTTCTTTCAATGGTAGGTTA+AGG + chr8_2:3745271-3745290 None:intergenic 30.0%
TTAACCTACCATTGAAAGAA+AGG - chr8_2:3745270-3745289 Msa1228260:intron 30.0%
AGTTAATGTTGTCTCAATTG+CGG - chr8_2:3745872-3745891 Msa1228260:intron 30.0%
CGATAGCTCTTTATCAATTT+AGG - chr8_2:3745940-3745959 Msa1228260:intron 30.0%
!! AAAATTTGCTATAAGCAAGC+AGG - chr8_2:3746204-3746223 Msa1228260:CDS 30.0%
TTGCTGATAATTAGATGACT+TGG - chr8_2:3746272-3746291 Msa1228260:five_prime_UTR 30.0%
! ATGTGAAAATCAAAGCACTT+AGG + chr8_2:3746328-3746347 None:intergenic 30.0%
TGTTAAAGCACAACAACAAC+AGG - chr8_2:3744300-3744319 Msa1228260:CDS 35.0%
AAGAACAGCTTGAACAAAAG+AGG + chr8_2:3744377-3744396 None:intergenic 35.0%
CAAGTAACATGGTAAAACCT+TGG - chr8_2:3744528-3744547 Msa1228260:intron 35.0%
ATCATTAGATCAAGACCGAA+CGG - chr8_2:3744893-3744912 Msa1228260:CDS 35.0%
GAACTTGATTCTGAATTGTC+CGG - chr8_2:3744963-3744982 Msa1228260:CDS 35.0%
ATTGTCCGGTCTTGATTAAA+TGG - chr8_2:3744977-3744996 Msa1228260:CDS 35.0%
AAATAGGTTTCCATGCAGTA+GGG + chr8_2:3745037-3745056 None:intergenic 35.0%
AGAACCTTTCTTTCAATGGT+AGG + chr8_2:3745277-3745296 None:intergenic 35.0%
AGGTAGAACCTTTCTTTCAA+TGG + chr8_2:3745281-3745300 None:intergenic 35.0%
! CGTAGATCATTCTGAAGATA+TGG + chr8_2:3745398-3745417 None:intergenic 35.0%
TACTTACATTGTCGATATCC+TGG + chr8_2:3745520-3745539 None:intergenic 35.0%
ACTGCAGATAATCACGTATT+TGG - chr8_2:3745605-3745624 Msa1228260:intron 35.0%
TCACGTATTTGGATTGCTTA+TGG - chr8_2:3745616-3745635 Msa1228260:intron 35.0%
CAGCAAATTGGTTGTAAAGT+TGG + chr8_2:3745788-3745807 None:intergenic 35.0%
CATTCATGTAGTCAGCAAAT+TGG + chr8_2:3745800-3745819 None:intergenic 35.0%
CAATCCAAATTCGAGAATCA+CGG - chr8_2:3745841-3745860 Msa1228260:intron 35.0%
GTTAACGACATAAAAACCCA+CGG - chr8_2:3745905-3745924 Msa1228260:intron 35.0%
! TCTTTATCAATTTAGGGCTG+TGG - chr8_2:3745947-3745966 Msa1228260:intron 35.0%
! TCTTGTGTAAGCTTTGTCTA+TGG - chr8_2:3746128-3746147 Msa1228260:CDS 35.0%
AGAAGGTGAGAACAAAAAGA+AGG - chr8_2:3746377-3746396 Msa1228260:five_prime_UTR 35.0%
TGTTAAAGCACAACAACAAC+AGG - chr8_2:3744300-3744319 Msa1228260:CDS 35.0%
AAGAACAGCTTGAACAAAAG+AGG + chr8_2:3744377-3744396 None:intergenic 35.0%
CAAGTAACATGGTAAAACCT+TGG - chr8_2:3744528-3744547 Msa1228260:intron 35.0%
ATCATTAGATCAAGACCGAA+CGG - chr8_2:3744893-3744912 Msa1228260:CDS 35.0%
GAACTTGATTCTGAATTGTC+CGG - chr8_2:3744963-3744982 Msa1228260:CDS 35.0%
ATTGTCCGGTCTTGATTAAA+TGG - chr8_2:3744977-3744996 Msa1228260:CDS 35.0%
AAATAGGTTTCCATGCAGTA+GGG + chr8_2:3745037-3745056 None:intergenic 35.0%
AGAACCTTTCTTTCAATGGT+AGG + chr8_2:3745277-3745296 None:intergenic 35.0%
AGGTAGAACCTTTCTTTCAA+TGG + chr8_2:3745281-3745300 None:intergenic 35.0%
! CGTAGATCATTCTGAAGATA+TGG + chr8_2:3745398-3745417 None:intergenic 35.0%
TACTTACATTGTCGATATCC+TGG + chr8_2:3745520-3745539 None:intergenic 35.0%
ACTGCAGATAATCACGTATT+TGG - chr8_2:3745605-3745624 Msa1228260:intron 35.0%
TCACGTATTTGGATTGCTTA+TGG - chr8_2:3745616-3745635 Msa1228260:intron 35.0%
CAGCAAATTGGTTGTAAAGT+TGG + chr8_2:3745788-3745807 None:intergenic 35.0%
CATTCATGTAGTCAGCAAAT+TGG + chr8_2:3745800-3745819 None:intergenic 35.0%
CAATCCAAATTCGAGAATCA+CGG - chr8_2:3745841-3745860 Msa1228260:intron 35.0%
GTTAACGACATAAAAACCCA+CGG - chr8_2:3745905-3745924 Msa1228260:intron 35.0%
! TCTTTATCAATTTAGGGCTG+TGG - chr8_2:3745947-3745966 Msa1228260:intron 35.0%
! TCTTGTGTAAGCTTTGTCTA+TGG - chr8_2:3746128-3746147 Msa1228260:CDS 35.0%
AGAAGGTGAGAACAAAAAGA+AGG - chr8_2:3746377-3746396 Msa1228260:five_prime_UTR 35.0%
CAAAAACATGGCTCAAGCTA+TGG - chr8_2:3744141-3744160 Msa1228260:three_prime_UTR 40.0%
TTCATCATCTCAAGCTGTGA+TGG - chr8_2:3744189-3744208 Msa1228260:three_prime_UTR 40.0%
TTCAACTGAGTGGATCAAAC+AGG - chr8_2:3744221-3744240 Msa1228260:three_prime_UTR 40.0%
! AACAGGTTGAACATGTTGCA+TGG - chr8_2:3744238-3744257 Msa1228260:three_prime_UTR 40.0%
AGAGGCAGTAACATATACCA+AGG + chr8_2:3744548-3744567 None:intergenic 40.0%
AATTCGGAGTACATGCAGTT+AGG - chr8_2:3744835-3744854 Msa1228260:intron 40.0%
ATTCGGAGTACATGCAGTTA+GGG - chr8_2:3744836-3744855 Msa1228260:intron 40.0%
! GGTTGCCATTTAATCAAGAC+CGG + chr8_2:3744985-3745004 None:intergenic 40.0%
TGGCAACCGATGTTCTTAAT+AGG - chr8_2:3744997-3745016 Msa1228260:CDS 40.0%
GAAATAGGTTTCCATGCAGT+AGG + chr8_2:3745038-3745057 None:intergenic 40.0%
GATTTATGGAATTTGGCAGC+TGG - chr8_2:3745218-3745237 Msa1228260:intron 40.0%
AGTTCATAGACCAGAAAGCT+TGG - chr8_2:3745372-3745391 Msa1228260:intron 40.0%
! TTGCAGAGATGATGGTGTTA+AGG + chr8_2:3745448-3745467 None:intergenic 40.0%
!!! AGGGATTTTTTCTGGTCCTT+TGG + chr8_2:3745473-3745492 None:intergenic 40.0%
!!! GTTCCTTGAGGGATTTTTTC+TGG + chr8_2:3745481-3745500 None:intergenic 40.0%
ATCTGCAGTCTCAAGAACTT+CGG + chr8_2:3745594-3745613 None:intergenic 40.0%
TTGACCGTGATTCTCGAATT+TGG + chr8_2:3745848-3745867 None:intergenic 40.0%
! ATTTAGGGCTGTGGAAAGAT+TGG - chr8_2:3745956-3745975 Msa1228260:CDS 40.0%
! TTTTCTTCTTTGTTCCCAGC+TGG - chr8_2:3745991-3746010 Msa1228260:CDS 40.0%
! TTTTGCTGCATAATCCAGCT+GGG + chr8_2:3746008-3746027 None:intergenic 40.0%
TAGTACTTCTCTGCATCTGA+GGG + chr8_2:3746040-3746059 None:intergenic 40.0%
ATAGTACTTCTCTGCATCTG+AGG + chr8_2:3746041-3746060 None:intergenic 40.0%
CAAAAACATGGCTCAAGCTA+TGG - chr8_2:3744141-3744160 Msa1228260:three_prime_UTR 40.0%
TTCATCATCTCAAGCTGTGA+TGG - chr8_2:3744189-3744208 Msa1228260:three_prime_UTR 40.0%
TTCAACTGAGTGGATCAAAC+AGG - chr8_2:3744221-3744240 Msa1228260:three_prime_UTR 40.0%
! AACAGGTTGAACATGTTGCA+TGG - chr8_2:3744238-3744257 Msa1228260:three_prime_UTR 40.0%
AGAGGCAGTAACATATACCA+AGG + chr8_2:3744548-3744567 None:intergenic 40.0%
AATTCGGAGTACATGCAGTT+AGG - chr8_2:3744835-3744854 Msa1228260:intron 40.0%
ATTCGGAGTACATGCAGTTA+GGG - chr8_2:3744836-3744855 Msa1228260:intron 40.0%
! GGTTGCCATTTAATCAAGAC+CGG + chr8_2:3744985-3745004 None:intergenic 40.0%
TGGCAACCGATGTTCTTAAT+AGG - chr8_2:3744997-3745016 Msa1228260:CDS 40.0%
GAAATAGGTTTCCATGCAGT+AGG + chr8_2:3745038-3745057 None:intergenic 40.0%
GATTTATGGAATTTGGCAGC+TGG - chr8_2:3745218-3745237 Msa1228260:intron 40.0%
AGTTCATAGACCAGAAAGCT+TGG - chr8_2:3745372-3745391 Msa1228260:intron 40.0%
! TTGCAGAGATGATGGTGTTA+AGG + chr8_2:3745448-3745467 None:intergenic 40.0%
!!! AGGGATTTTTTCTGGTCCTT+TGG + chr8_2:3745473-3745492 None:intergenic 40.0%
!!! GTTCCTTGAGGGATTTTTTC+TGG + chr8_2:3745481-3745500 None:intergenic 40.0%
ATCTGCAGTCTCAAGAACTT+CGG + chr8_2:3745594-3745613 None:intergenic 40.0%
TTGACCGTGATTCTCGAATT+TGG + chr8_2:3745848-3745867 None:intergenic 40.0%
! ATTTAGGGCTGTGGAAAGAT+TGG - chr8_2:3745956-3745975 Msa1228260:CDS 40.0%
! TTTTCTTCTTTGTTCCCAGC+TGG - chr8_2:3745991-3746010 Msa1228260:CDS 40.0%
! TTTTGCTGCATAATCCAGCT+GGG + chr8_2:3746008-3746027 None:intergenic 40.0%
TAGTACTTCTCTGCATCTGA+GGG + chr8_2:3746040-3746059 None:intergenic 40.0%
ATAGTACTTCTCTGCATCTG+AGG + chr8_2:3746041-3746060 None:intergenic 40.0%
! TCATCTCAAGCTGTGATGGA+AGG - chr8_2:3744193-3744212 Msa1228260:three_prime_UTR 45.0%
GAAGGAAGTCTTCAACTGAG+TGG - chr8_2:3744211-3744230 Msa1228260:three_prime_UTR 45.0%
GCATGGTAGCAACAGTAACA+AGG - chr8_2:3744255-3744274 Msa1228260:three_prime_UTR 45.0%
!! TGGTCTTGTTGCAACTGGTT+TGG - chr8_2:3744345-3744364 Msa1228260:CDS 45.0%
TGTTCAAGCTGTTCTTGCTG+AGG - chr8_2:3744381-3744400 Msa1228260:intron 45.0%
GAGGCCATTCCCATTAAAGT+TGG - chr8_2:3744400-3744419 Msa1228260:intron 45.0%
GCCATTCCCATTAAAGTTGG+TGG - chr8_2:3744403-3744422 Msa1228260:intron 45.0%
GCCACCAACTTTAATGGGAA+TGG + chr8_2:3744407-3744426 None:intergenic 45.0%
GAGTACACACACACACAACA+TGG - chr8_2:3744786-3744805 Msa1228260:intron 45.0%
CTGCAATTTCTTGGACCGTT+CGG + chr8_2:3744911-3744930 None:intergenic 45.0%
!! CAGTTGGTGTCAATGGTTGA+AGG + chr8_2:3745301-3745320 None:intergenic 45.0%
TCAACCATTGACACCAACTG+AGG - chr8_2:3745301-3745320 Msa1228260:intron 45.0%
GAAGATATGGCCAAGCTTTC+TGG + chr8_2:3745385-3745404 None:intergenic 45.0%
AATGATCTACGTCTCAGAGC+TGG - chr8_2:3745407-3745426 Msa1228260:intron 45.0%
!! CTTTGGCTTTGCAGAGATGA+TGG + chr8_2:3745456-3745475 None:intergenic 45.0%
CATCATCTCTGCAAAGCCAA+AGG - chr8_2:3745454-3745473 Msa1228260:intron 45.0%
GGACCAGAAAAAATCCCTCA+AGG - chr8_2:3745475-3745494 Msa1228260:intron 45.0%
AAATCCCTCAAGGAACTCAC+CGG - chr8_2:3745485-3745504 Msa1228260:intron 45.0%
GATATCCTGGAAGAGCTTTC+CGG + chr8_2:3745507-3745526 None:intergenic 45.0%
TCATGCAGTCAGCACATTTG+TGG - chr8_2:3745655-3745674 Msa1228260:intron 45.0%
GTCAGCACATTTGTGGTTGA+TGG - chr8_2:3745662-3745681 Msa1228260:intron 45.0%
!! TGTGGTTGATGGATCGAGAT+TGG - chr8_2:3745673-3745692 Msa1228260:intron 45.0%
TCTCGAATTTGGATTGCCTG+CGG + chr8_2:3745837-3745856 None:intergenic 45.0%
! CTTTTGCTGCATAATCCAGC+TGG + chr8_2:3746009-3746028 None:intergenic 45.0%
AGTACTTCTCTGCATCTGAG+GGG + chr8_2:3746039-3746058 None:intergenic 45.0%
! TCATCTCAAGCTGTGATGGA+AGG - chr8_2:3744193-3744212 Msa1228260:three_prime_UTR 45.0%
GAAGGAAGTCTTCAACTGAG+TGG - chr8_2:3744211-3744230 Msa1228260:three_prime_UTR 45.0%
GCATGGTAGCAACAGTAACA+AGG - chr8_2:3744255-3744274 Msa1228260:three_prime_UTR 45.0%
!! TGGTCTTGTTGCAACTGGTT+TGG - chr8_2:3744345-3744364 Msa1228260:CDS 45.0%
TGTTCAAGCTGTTCTTGCTG+AGG - chr8_2:3744381-3744400 Msa1228260:intron 45.0%
GAGGCCATTCCCATTAAAGT+TGG - chr8_2:3744400-3744419 Msa1228260:intron 45.0%
GCCATTCCCATTAAAGTTGG+TGG - chr8_2:3744403-3744422 Msa1228260:intron 45.0%
GCCACCAACTTTAATGGGAA+TGG + chr8_2:3744407-3744426 None:intergenic 45.0%
GAGTACACACACACACAACA+TGG - chr8_2:3744786-3744805 Msa1228260:intron 45.0%
CTGCAATTTCTTGGACCGTT+CGG + chr8_2:3744911-3744930 None:intergenic 45.0%
!! CAGTTGGTGTCAATGGTTGA+AGG + chr8_2:3745301-3745320 None:intergenic 45.0%
TCAACCATTGACACCAACTG+AGG - chr8_2:3745301-3745320 Msa1228260:intron 45.0%
GAAGATATGGCCAAGCTTTC+TGG + chr8_2:3745385-3745404 None:intergenic 45.0%
AATGATCTACGTCTCAGAGC+TGG - chr8_2:3745407-3745426 Msa1228260:intron 45.0%
!! CTTTGGCTTTGCAGAGATGA+TGG + chr8_2:3745456-3745475 None:intergenic 45.0%
CATCATCTCTGCAAAGCCAA+AGG - chr8_2:3745454-3745473 Msa1228260:intron 45.0%
GGACCAGAAAAAATCCCTCA+AGG - chr8_2:3745475-3745494 Msa1228260:intron 45.0%
AAATCCCTCAAGGAACTCAC+CGG - chr8_2:3745485-3745504 Msa1228260:intron 45.0%
GATATCCTGGAAGAGCTTTC+CGG + chr8_2:3745507-3745526 None:intergenic 45.0%
TCATGCAGTCAGCACATTTG+TGG - chr8_2:3745655-3745674 Msa1228260:intron 45.0%
GTCAGCACATTTGTGGTTGA+TGG - chr8_2:3745662-3745681 Msa1228260:intron 45.0%
!! TGTGGTTGATGGATCGAGAT+TGG - chr8_2:3745673-3745692 Msa1228260:intron 45.0%
TCTCGAATTTGGATTGCCTG+CGG + chr8_2:3745837-3745856 None:intergenic 45.0%
! CTTTTGCTGCATAATCCAGC+TGG + chr8_2:3746009-3746028 None:intergenic 45.0%
AGTACTTCTCTGCATCTGAG+GGG + chr8_2:3746039-3746058 None:intergenic 45.0%
GGCTCAAGCTATGGCTTCAA+TGG - chr8_2:3744150-3744169 Msa1228260:three_prime_UTR 50.0%
CAAGCTATGGCTTCAATGGC+TGG - chr8_2:3744154-3744173 Msa1228260:three_prime_UTR 50.0%
! TCAATGGCTGGTTGCTTACG+TGG - chr8_2:3744166-3744185 Msa1228260:three_prime_UTR 50.0%
AGTAGCAGAAGAGCAGTGCT+TGG - chr8_2:3744325-3744344 Msa1228260:CDS 50.0%
!! GTGCTTGGTCTTGTTGCAAC+TGG - chr8_2:3744340-3744359 Msa1228260:CDS 50.0%
GGAGGGCCACCAACTTTAAT+GGG + chr8_2:3744412-3744431 None:intergenic 50.0%
AGGAGGGCCACCAACTTTAA+TGG + chr8_2:3744413-3744432 None:intergenic 50.0%
TACTTACGAAGGCCACCAGA+AGG + chr8_2:3744439-3744458 None:intergenic 50.0%
TACGGTGAATCCCTACTGCA+TGG - chr8_2:3745024-3745043 Msa1228260:CDS 50.0%
GTCTCAGAGCTGGCTATCTT+CGG - chr8_2:3745417-3745436 Msa1228260:intron 50.0%
CTTTCCGGTGAGTTCCTTGA+GGG + chr8_2:3745492-3745511 None:intergenic 50.0%
GGCTCAAGCTATGGCTTCAA+TGG - chr8_2:3744150-3744169 Msa1228260:three_prime_UTR 50.0%
CAAGCTATGGCTTCAATGGC+TGG - chr8_2:3744154-3744173 Msa1228260:three_prime_UTR 50.0%
! TCAATGGCTGGTTGCTTACG+TGG - chr8_2:3744166-3744185 Msa1228260:three_prime_UTR 50.0%
AGTAGCAGAAGAGCAGTGCT+TGG - chr8_2:3744325-3744344 Msa1228260:CDS 50.0%
!! GTGCTTGGTCTTGTTGCAAC+TGG - chr8_2:3744340-3744359 Msa1228260:CDS 50.0%
GGAGGGCCACCAACTTTAAT+GGG + chr8_2:3744412-3744431 None:intergenic 50.0%
AGGAGGGCCACCAACTTTAA+TGG + chr8_2:3744413-3744432 None:intergenic 50.0%
TACTTACGAAGGCCACCAGA+AGG + chr8_2:3744439-3744458 None:intergenic 50.0%
TACGGTGAATCCCTACTGCA+TGG - chr8_2:3745024-3745043 Msa1228260:CDS 50.0%
GTCTCAGAGCTGGCTATCTT+CGG - chr8_2:3745417-3745436 Msa1228260:intron 50.0%
CTTTCCGGTGAGTTCCTTGA+GGG + chr8_2:3745492-3745511 None:intergenic 50.0%
TTACGAAGGCCACCAGAAGG+TGG + chr8_2:3744436-3744455 None:intergenic 55.0%
!! GCTGCCTCAGTTGGTGTCAA+TGG + chr8_2:3745308-3745327 None:intergenic 55.0%
TGAGGCAGCTGCAAGAGCTA+AGG - chr8_2:3745319-3745338 Msa1228260:intron 55.0%
GCTTTCCGGTGAGTTCCTTG+AGG + chr8_2:3745493-3745512 None:intergenic 55.0%
ACTCACCGGAAAGCTCTTCC+AGG - chr8_2:3745499-3745518 Msa1228260:intron 55.0%
!! GTGCTGACTGCATGAATGCG+TGG + chr8_2:3745650-3745669 None:intergenic 55.0%
TGCATGAGATTGCTAGCCGC+AGG - chr8_2:3745818-3745837 Msa1228260:intron 55.0%
TCTCAATTGCGGTCACGCTG+TGG - chr8_2:3745883-3745902 Msa1228260:intron 55.0%
ATCGGATTACGCAGCACCGT+GGG + chr8_2:3745924-3745943 None:intergenic 55.0%
TATCGGATTACGCAGCACCG+TGG + chr8_2:3745925-3745944 None:intergenic 55.0%
TTACGAAGGCCACCAGAAGG+TGG + chr8_2:3744436-3744455 None:intergenic 55.0%
!! GCTGCCTCAGTTGGTGTCAA+TGG + chr8_2:3745308-3745327 None:intergenic 55.0%
TGAGGCAGCTGCAAGAGCTA+AGG - chr8_2:3745319-3745338 Msa1228260:intron 55.0%
GCTTTCCGGTGAGTTCCTTG+AGG + chr8_2:3745493-3745512 None:intergenic 55.0%
ACTCACCGGAAAGCTCTTCC+AGG - chr8_2:3745499-3745518 Msa1228260:intron 55.0%
!! GTGCTGACTGCATGAATGCG+TGG + chr8_2:3745650-3745669 None:intergenic 55.0%
TGCATGAGATTGCTAGCCGC+AGG - chr8_2:3745818-3745837 Msa1228260:intron 55.0%
TCTCAATTGCGGTCACGCTG+TGG - chr8_2:3745883-3745902 Msa1228260:intron 55.0%
ATCGGATTACGCAGCACCGT+GGG + chr8_2:3745924-3745943 None:intergenic 55.0%
TATCGGATTACGCAGCACCG+TGG + chr8_2:3745925-3745944 None:intergenic 55.0%
GCTCTTGCAGCTGCCTCAGT+TGG + chr8_2:3745317-3745336 None:intergenic 60.0%
GCTCTTGCAGCTGCCTCAGT+TGG + chr8_2:3745317-3745336 None:intergenic 60.0%
GGCCACCAGAAGGTGGAGGA+GGG + chr8_2:3744429-3744448 None:intergenic 65.0%
AGGCCACCAGAAGGTGGAGG+AGG + chr8_2:3744430-3744449 None:intergenic 65.0%
CGAAGGCCACCAGAAGGTGG+AGG + chr8_2:3744433-3744452 None:intergenic 65.0%
GGCCACCAGAAGGTGGAGGA+GGG + chr8_2:3744429-3744448 None:intergenic 65.0%
AGGCCACCAGAAGGTGGAGG+AGG + chr8_2:3744430-3744449 None:intergenic 65.0%
CGAAGGCCACCAGAAGGTGG+AGG + chr8_2:3744433-3744452 None:intergenic 65.0%
GGTGGCCCTCCTCCACCTTC+TGG - chr8_2:3744421-3744440 Msa1228260:intron 70.0%
GGCCCTCCTCCACCTTCTGG+TGG - chr8_2:3744424-3744443 Msa1228260:intron 70.0%
GGTGGCCCTCCTCCACCTTC+TGG - chr8_2:3744421-3744440 Msa1228260:intron 70.0%
GGCCCTCCTCCACCTTCTGG+TGG - chr8_2:3744424-3744443 Msa1228260:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 3743994 3746410 3743994 ID=Msa1228260;Name=Msa1228260
chr8_2 mRNA 3743994 3746410 3743994 ID=Msa1228260-mRNA-1;Parent=Msa1228260;Name=Msa1228260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=154|1|1|1|1|1|3|302|232
chr8_2 exon 3743994 3744394 3743994 ID=Msa1228260-mRNA-1:exon:1168;Parent=Msa1228260-mRNA-1
chr8_2 exon 3744872 3745167 3744872 ID=Msa1228260-mRNA-1:exon:1167;Parent=Msa1228260-mRNA-1
chr8_2 exon 3745953 3746410 3745953 ID=Msa1228260-mRNA-1:exon:1166;Parent=Msa1228260-mRNA-1
chr8_2 five_prime_UTR 3746257 3746410 3746257 ID=Msa1228260-mRNA-1:five_prime_utr;Parent=Msa1228260-mRNA-1
chr8_2 CDS 3745953 3746256 3745953 ID=Msa1228260-mRNA-1:cds;Parent=Msa1228260-mRNA-1
chr8_2 CDS 3744872 3745167 3744872 ID=Msa1228260-mRNA-1:cds;Parent=Msa1228260-mRNA-1
chr8_2 CDS 3744296 3744394 3744296 ID=Msa1228260-mRNA-1:cds;Parent=Msa1228260-mRNA-1
chr8_2 three_prime_UTR 3743994 3744295 3743994 ID=Msa1228260-mRNA-1:three_prime_utr;Parent=Msa1228260-mRNA-1
Gene Sequence

>Msa1228260

ATGGCTCAAGCTATGGCTTCAATGGCTGGTTGCTTACGTGGTTCATCATCTCAAGCTGTGATGGAAGGAAGTCTTCAACTGAGTGGATCAAACAGGTTGAACATGTTGCATGGTAGCAACAGTAACAAGGTTACACGTTCATCAGTGACAGTTGTTAAAGCACAACAACAACAGGAAAGTAGCAGAAGAGCAGTGCTTGGTCTTGTTGCAACTGGTTTGGTTTCTTCCTCTTTTGTTCAAGCTGTTCTTGCTGAGGCCATTCCCATTAAAGTTGGTGGCCCTCCTCCACCTTCTGGTGGCCTTCCTGGAACACTGAACTCAGATGAAGCAAGAGACCTTAACCTACCATTGAAAGAAAGGTTCTACCTTCAACCATTGACACCAACTGAGGCAGCTGCAAGAGCTAAGGAGTCAGCAAAAGAAATTGTTGCTGCTAAGAAGTTCATAGACCAGAAAGCTTGGCCATATCTTCAGAATGATCTACGTCTCAGAGCTGGCTATCTTCGGTATGACCTTAACACCATCATCTCTGCAAAGCCAAAGGACCAGAAAAAATCCCTCAAGGAACTCACCGGAAAGCTCTTCCAGGATATCGACAATCTGGATTATGCAGCAAAAGTTAAGAGCCCCTCAGATGCAGAGAAGTACTATGCTATAGCTGTATCTACTCTGAATGATGTTCTTAGCAAAATTGGTTAA

Protein sequence

>Msa1228260

MAQAMASMAGCLRGSSSQAVMEGSLQLSGSNRLNMLHGSNSNKVTRSSVTVVKAQQQQESSRRAVLGLVATGLVSSSFVQAVLAEAIPIKVGGPPPPSGGLPGTLNSDEARDLNLPLKERFYLQPLTPTEAAARAKESAKEIVAAKKFIDQKAWPYLQNDLRLRAGYLRYDLNTIISAKPKDQKKSLKELTGKLFQDIDNLDYAAKVKSPSDAEKYYAIAVSTLNDVLSKIG*