AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093360 MtrunA17_Chr2g0331621 97.279 147 3 1 1 146 1 147 4.22e-99 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093360 AT1G52230.1 79.452 146 29 1 1 146 1 145 2.19e-81 236
Msa0093360 AT3G16140.1 78.082 146 31 1 1 146 1 145 8.09e-80 232

Find 61 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCAAATCCAAGAATTTA+AGG 0.134528 1_2:+76133356 Msa0093360:CDS
GTGAAAGTACCTTAAATTCT+TGG 0.244082 1_2:-76133365 None:intergenic
CTTGCTGGCAGTTCCATTAC+TGG 0.265222 1_2:+76133301 Msa0093360:CDS
TATTAGAAACTTTCGGTATT+GGG 0.309147 1_2:+76135095 Msa0093360:three_prime_UTR
TACTTCAGTGCCACAGCTTC+AGG 0.317013 1_2:+76134623 Msa0093360:CDS
TACTTTGATTTGGAGGATAT+TGG 0.323961 1_2:+76133689 Msa0093360:CDS
CAAGAGTGTGTACTTTGATT+TGG 0.336220 1_2:+76133679 Msa0093360:CDS
TAGTATGCAGCAATTTCATT+AGG 0.352262 1_2:+76134887 Msa0093360:three_prime_UTR
ATATTAGAAACTTTCGGTAT+TGG 0.353474 1_2:+76135094 Msa0093360:three_prime_UTR
TTGCCACGGGGACCGAGCTT+TGG 0.360365 1_2:-76134683 None:intergenic
CTCAATGTTAAGGGTCTTGC+TGG 0.365303 1_2:+76133286 Msa0093360:CDS
ATATGAAAATGAAGATAATA+AGG 0.379488 1_2:-76135016 None:intergenic
AAAAGTAAAACACATTGAAC+TGG 0.381599 1_2:-76134722 None:intergenic
CTCACCATACAACCCTCTTC+AGG 0.381984 1_2:+76133754 Msa0093360:CDS
ACCAGCTGGTCTCAATGTTA+AGG 0.384673 1_2:+76133276 Msa0093360:CDS
CCACGGGGACCGAGCTTTGG+TGG 0.404075 1_2:-76134680 None:intergenic
TTAGGATGTTGGTCTTAATT+CGG 0.409293 1_2:+76134905 Msa0093360:three_prime_UTR
GGCTCTGTGGTAGCAAAGTA+TGG 0.420308 1_2:+76133653 Msa0093360:CDS
AGCTGTGGACCTTTCTTGAT+TGG 0.426964 1_2:-76134656 None:intergenic
CACTTGATATTAGAAACTTT+CGG 0.427007 1_2:+76135088 Msa0093360:three_prime_UTR
CAGCAATTTCATTAGGATGT+TGG 0.439676 1_2:+76134894 Msa0093360:three_prime_UTR
GATCAAAATGTGACATGCTT+TGG 0.444197 1_2:-76133181 None:intergenic
CCAGCTGGTCTCAATGTTAA+GGG 0.447321 1_2:+76133277 Msa0093360:CDS
GTGGAAAATAATAAACCATA+TGG 0.455212 1_2:+76133225 Msa0093360:exon
ACTGTATTAAGACTAGTAAT+AGG 0.455465 1_2:-76134827 None:intergenic
GAGTGTGTACTTTGATTTGG+AGG 0.467087 1_2:+76133682 Msa0093360:CDS
GAACGTATAAAACACATAAA+CGG 0.473990 1_2:-76134928 None:intergenic
AGCATCATCATATGATTCAA+TGG 0.483561 1_2:-76135180 None:intergenic
GAGGATATTGGCAACACTAC+AGG 0.483887 1_2:+76133701 Msa0093360:CDS
AATTCTTGGATTTGAAACTC+TGG 0.485960 1_2:-76133351 None:intergenic
CAAACCTGAAGAGGGTTGTA+TGG 0.501808 1_2:-76133758 None:intergenic
CAAGAGTTGAACCACCTCCT+AGG 0.515089 1_2:-76134598 None:intergenic
AATAATCCTCTCTTTGTGAA+TGG 0.515909 1_2:-76134560 None:intergenic
CCCTTAACATTGAGACCAGC+TGG 0.523582 1_2:-76133277 None:intergenic
AGGTAGCAAGGGAAGCCATA+TGG 0.523790 1_2:-76133240 None:intergenic
CCGAGCTTTGGTGGAAGCTG+TGG 0.524654 1_2:-76134671 None:intergenic
GACATTCTACCAATCAAGAA+AGG 0.540823 1_2:+76134647 Msa0093360:CDS
AGATAGCTTAGTTCCAGTAA+TGG 0.548416 1_2:-76133314 None:intergenic
AGCTGGTTGTACACAAGCTA+AGG 0.551993 1_2:-76133260 None:intergenic
GCAGCTCCATTCACAAAGAG+AGG 0.555627 1_2:+76134554 Msa0093360:CDS
TCCAGTAGACAAACCTGAAG+AGG 0.558714 1_2:-76133767 None:intergenic
ACAGGTCAGTGGGATTTGTA+CGG 0.573529 1_2:+76133719 Msa0093360:CDS
TTAGCTTGTGTACAACCAGC+TGG 0.579471 1_2:+76133262 Msa0093360:CDS
GTACACAAGCTAAGGTAGCA+AGG 0.579499 1_2:-76133252 None:intergenic
GATTTGAAACTCTGGCGAGA+GGG 0.583566 1_2:-76133343 None:intergenic
CCACAGCTTCCACCAAAGCT+CGG 0.583979 1_2:+76134671 Msa0093360:CDS
ACAAGAGGAAGAGAATTAAG+TGG 0.584597 1_2:+76133206 Msa0093360:five_prime_UTR
TGGCAACACTACAGGTCAGT+GGG 0.596869 1_2:+76133709 Msa0093360:CDS
AACTAGATTAGATCTTGCCA+CGG 0.597660 1_2:-76134697 None:intergenic
GGATTTGAAACTCTGGCGAG+AGG 0.599558 1_2:-76133344 None:intergenic
ACTAGATTAGATCTTGCCAC+GGG 0.603116 1_2:-76134696 None:intergenic
CCAGTAGACAAACCTGAAGA+GGG 0.614925 1_2:-76133766 None:intergenic
TACACAAGCTAAGGTAGCAA+GGG 0.622521 1_2:-76133251 None:intergenic
TGAAGAGGGTTGTATGGTGA+GGG 0.652580 1_2:-76133752 None:intergenic
AAAGTAAAACACATTGAACT+GGG 0.652851 1_2:-76134721 None:intergenic
AACTTGCAGGAGTGGCTCTG+TGG 0.654086 1_2:+76133640 Msa0093360:intron
CCACCAAAGCTCGGTCCCCG+TGG 0.657534 1_2:+76134680 Msa0093360:CDS
TTGGCAACACTACAGGTCAG+TGG 0.661910 1_2:+76133708 Msa0093360:CDS
TAGAATGTCACCTGAAGCTG+TGG 0.676047 1_2:-76134633 None:intergenic
CTGAAGAGGGTTGTATGGTG+AGG 0.677728 1_2:-76133753 None:intergenic
CTAGATTAGATCTTGCCACG+GGG 0.731168 1_2:-76134695 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACTTATCTAATCTAAAT+AGG - chr1_2:76133538-76133557 None:intergenic 15.0%
!! TTATATTAAGTGTCTTTATA+AGG + chr1_2:76134118-76134137 Msa0093360:intron 15.0%
!! ATCAAAGAAATCAATTAATT+TGG - chr1_2:76134460-76134479 None:intergenic 15.0%
!! ATATGAAAATGAAGATAATA+AGG - chr1_2:76135019-76135038 None:intergenic 15.0%
!!! TTATTATCTTCATTTTCATA+TGG + chr1_2:76135018-76135037 Msa0093360:three_prime_UTR 15.0%
!! ATAACTTATCTAATCTAAAT+AGG - chr1_2:76133538-76133557 None:intergenic 15.0%
!! TTATATTAAGTGTCTTTATA+AGG + chr1_2:76134118-76134137 Msa0093360:intron 15.0%
!! ATCAAAGAAATCAATTAATT+TGG - chr1_2:76134460-76134479 None:intergenic 15.0%
!! ATATGAAAATGAAGATAATA+AGG - chr1_2:76135019-76135038 None:intergenic 15.0%
!!! TTATTATCTTCATTTTCATA+TGG + chr1_2:76135018-76135037 Msa0093360:three_prime_UTR 15.0%
!! ACATTAGCGTAATAAAAAAA+CGG - chr1_2:76133444-76133463 None:intergenic 20.0%
!! TAGATCAACAAAATAATCTA+TGG - chr1_2:76133883-76133902 None:intergenic 20.0%
!! AATAAGCTGAAAATAACTTA+TGG + chr1_2:76134021-76134040 Msa0093360:intron 20.0%
!!! CTTCTTGTTTTCTTATAATA+AGG - chr1_2:76134235-76134254 None:intergenic 20.0%
!!! AAATGTAATTAGTTCTTCAT+TGG + chr1_2:76134294-76134313 Msa0093360:intron 20.0%
!! ACATTAGCGTAATAAAAAAA+CGG - chr1_2:76133444-76133463 None:intergenic 20.0%
!! TAGATCAACAAAATAATCTA+TGG - chr1_2:76133883-76133902 None:intergenic 20.0%
!! AATAAGCTGAAAATAACTTA+TGG + chr1_2:76134021-76134040 Msa0093360:intron 20.0%
!!! CTTCTTGTTTTCTTATAATA+AGG - chr1_2:76134235-76134254 None:intergenic 20.0%
!!! AAATGTAATTAGTTCTTCAT+TGG + chr1_2:76134294-76134313 Msa0093360:intron 20.0%
! GTGGAAAATAATAAACCATA+TGG + chr1_2:76133225-76133244 Msa0093360:exon 25.0%
! GTTTCAAATCCAAGAATTTA+AGG + chr1_2:76133356-76133375 Msa0093360:CDS 25.0%
!!! ACATAACATAATTAACTTGC+AGG + chr1_2:76133627-76133646 Msa0093360:intron 25.0%
!!! CTTATTTTCATAAGTTTTCC+AGG - chr1_2:76134007-76134026 None:intergenic 25.0%
!! TGTTTTCTTATAATAAGGAC+TGG - chr1_2:76134230-76134249 None:intergenic 25.0%
! AGACATTTAATATGAGAATG+AGG + chr1_2:76134364-76134383 Msa0093360:intron 25.0%
! GACATTTAATATGAGAATGA+GGG + chr1_2:76134365-76134384 Msa0093360:intron 25.0%
!! TGCTGTAACAAATTGATTTA+TGG + chr1_2:76134410-76134429 Msa0093360:intron 25.0%
!! CTCATTTGTTGATATAAACT+TGG + chr1_2:76134502-76134521 Msa0093360:intron 25.0%
! AAAGTAAAACACATTGAACT+GGG - chr1_2:76134724-76134743 None:intergenic 25.0%
! AAAAGTAAAACACATTGAAC+TGG - chr1_2:76134725-76134744 None:intergenic 25.0%
! ACTGTATTAAGACTAGTAAT+AGG - chr1_2:76134830-76134849 None:intergenic 25.0%
! GAACGTATAAAACACATAAA+CGG - chr1_2:76134931-76134950 None:intergenic 25.0%
! CACTTGATATTAGAAACTTT+CGG + chr1_2:76135088-76135107 Msa0093360:three_prime_UTR 25.0%
! ATATTAGAAACTTTCGGTAT+TGG + chr1_2:76135094-76135113 Msa0093360:three_prime_UTR 25.0%
! TATTAGAAACTTTCGGTATT+GGG + chr1_2:76135095-76135114 Msa0093360:three_prime_UTR 25.0%
! GTGGAAAATAATAAACCATA+TGG + chr1_2:76133225-76133244 Msa0093360:exon 25.0%
! GTTTCAAATCCAAGAATTTA+AGG + chr1_2:76133356-76133375 Msa0093360:CDS 25.0%
!!! ACATAACATAATTAACTTGC+AGG + chr1_2:76133627-76133646 Msa0093360:intron 25.0%
!!! CTTATTTTCATAAGTTTTCC+AGG - chr1_2:76134007-76134026 None:intergenic 25.0%
!! TGTTTTCTTATAATAAGGAC+TGG - chr1_2:76134230-76134249 None:intergenic 25.0%
! AGACATTTAATATGAGAATG+AGG + chr1_2:76134364-76134383 Msa0093360:intron 25.0%
! GACATTTAATATGAGAATGA+GGG + chr1_2:76134365-76134384 Msa0093360:intron 25.0%
!! TGCTGTAACAAATTGATTTA+TGG + chr1_2:76134410-76134429 Msa0093360:intron 25.0%
!! CTCATTTGTTGATATAAACT+TGG + chr1_2:76134502-76134521 Msa0093360:intron 25.0%
! AAAGTAAAACACATTGAACT+GGG - chr1_2:76134724-76134743 None:intergenic 25.0%
! AAAAGTAAAACACATTGAAC+TGG - chr1_2:76134725-76134744 None:intergenic 25.0%
! ACTGTATTAAGACTAGTAAT+AGG - chr1_2:76134830-76134849 None:intergenic 25.0%
! GAACGTATAAAACACATAAA+CGG - chr1_2:76134931-76134950 None:intergenic 25.0%
! CACTTGATATTAGAAACTTT+CGG + chr1_2:76135088-76135107 Msa0093360:three_prime_UTR 25.0%
! ATATTAGAAACTTTCGGTAT+TGG + chr1_2:76135094-76135113 Msa0093360:three_prime_UTR 25.0%
! TATTAGAAACTTTCGGTATT+GGG + chr1_2:76135095-76135114 Msa0093360:three_prime_UTR 25.0%
! AATTCTTGGATTTGAAACTC+TGG - chr1_2:76133354-76133373 None:intergenic 30.0%
!! GTGAAAGTACCTTAAATTCT+TGG - chr1_2:76133368-76133387 None:intergenic 30.0%
!! TACTTTGATTTGGAGGATAT+TGG + chr1_2:76133689-76133708 Msa0093360:CDS 30.0%
AGTGATGTTTATATGTGTCT+AGG + chr1_2:76133847-76133866 Msa0093360:intron 30.0%
GACACTTAATATAACACAGA+GGG - chr1_2:76134112-76134131 None:intergenic 30.0%
AGACACTTAATATAACACAG+AGG - chr1_2:76134113-76134132 None:intergenic 30.0%
AATAATCCTCTCTTTGTGAA+TGG - chr1_2:76134563-76134582 None:intergenic 30.0%
TAGTATGCAGCAATTTCATT+AGG + chr1_2:76134887-76134906 Msa0093360:three_prime_UTR 30.0%
!! TTAGGATGTTGGTCTTAATT+CGG + chr1_2:76134905-76134924 Msa0093360:three_prime_UTR 30.0%
! AATTCTTGGATTTGAAACTC+TGG - chr1_2:76133354-76133373 None:intergenic 30.0%
!! GTGAAAGTACCTTAAATTCT+TGG - chr1_2:76133368-76133387 None:intergenic 30.0%
!! TACTTTGATTTGGAGGATAT+TGG + chr1_2:76133689-76133708 Msa0093360:CDS 30.0%
AGTGATGTTTATATGTGTCT+AGG + chr1_2:76133847-76133866 Msa0093360:intron 30.0%
GACACTTAATATAACACAGA+GGG - chr1_2:76134112-76134131 None:intergenic 30.0%
AGACACTTAATATAACACAG+AGG - chr1_2:76134113-76134132 None:intergenic 30.0%
AATAATCCTCTCTTTGTGAA+TGG - chr1_2:76134563-76134582 None:intergenic 30.0%
TAGTATGCAGCAATTTCATT+AGG + chr1_2:76134887-76134906 Msa0093360:three_prime_UTR 30.0%
!! TTAGGATGTTGGTCTTAATT+CGG + chr1_2:76134905-76134924 Msa0093360:three_prime_UTR 30.0%
GATCAAAATGTGACATGCTT+TGG - chr1_2:76133184-76133203 None:intergenic 35.0%
!! TCACATTTTGATCACACAAG+AGG + chr1_2:76133191-76133210 Msa0093360:five_prime_UTR 35.0%
ACAAGAGGAAGAGAATTAAG+TGG + chr1_2:76133206-76133225 Msa0093360:five_prime_UTR 35.0%
AGATAGCTTAGTTCCAGTAA+TGG - chr1_2:76133317-76133336 None:intergenic 35.0%
!! ACATAATTAACTTGCAGGAG+TGG + chr1_2:76133632-76133651 Msa0093360:intron 35.0%
! CAAGAGTGTGTACTTTGATT+TGG + chr1_2:76133679-76133698 Msa0093360:CDS 35.0%
GTTTATATGTGTCTAGGCTT+AGG + chr1_2:76133853-76133872 Msa0093360:intron 35.0%
TATAGTCTATAGGACAGCAA+AGG - chr1_2:76134087-76134106 None:intergenic 35.0%
! TTGCTCAAGTTTTTGATCCT+AGG + chr1_2:76134581-76134600 Msa0093360:CDS 35.0%
GACATTCTACCAATCAAGAA+AGG + chr1_2:76134647-76134666 Msa0093360:CDS 35.0%
AACTAGATTAGATCTTGCCA+CGG - chr1_2:76134700-76134719 None:intergenic 35.0%
CAGCAATTTCATTAGGATGT+TGG + chr1_2:76134894-76134913 Msa0093360:three_prime_UTR 35.0%
GATCAAAATGTGACATGCTT+TGG - chr1_2:76133184-76133203 None:intergenic 35.0%
!! TCACATTTTGATCACACAAG+AGG + chr1_2:76133191-76133210 Msa0093360:five_prime_UTR 35.0%
ACAAGAGGAAGAGAATTAAG+TGG + chr1_2:76133206-76133225 Msa0093360:five_prime_UTR 35.0%
AGATAGCTTAGTTCCAGTAA+TGG - chr1_2:76133317-76133336 None:intergenic 35.0%
!! ACATAATTAACTTGCAGGAG+TGG + chr1_2:76133632-76133651 Msa0093360:intron 35.0%
! CAAGAGTGTGTACTTTGATT+TGG + chr1_2:76133679-76133698 Msa0093360:CDS 35.0%
GTTTATATGTGTCTAGGCTT+AGG + chr1_2:76133853-76133872 Msa0093360:intron 35.0%
TATAGTCTATAGGACAGCAA+AGG - chr1_2:76134087-76134106 None:intergenic 35.0%
! TTGCTCAAGTTTTTGATCCT+AGG + chr1_2:76134581-76134600 Msa0093360:CDS 35.0%
GACATTCTACCAATCAAGAA+AGG + chr1_2:76134647-76134666 Msa0093360:CDS 35.0%
AACTAGATTAGATCTTGCCA+CGG - chr1_2:76134700-76134719 None:intergenic 35.0%
CAGCAATTTCATTAGGATGT+TGG + chr1_2:76134894-76134913 Msa0093360:three_prime_UTR 35.0%
TACACAAGCTAAGGTAGCAA+GGG - chr1_2:76133254-76133273 None:intergenic 40.0%
AAAAAACGGACAGACGAGTA+TGG - chr1_2:76133430-76133449 None:intergenic 40.0%
!! GAGTGTGTACTTTGATTTGG+AGG + chr1_2:76133682-76133701 Msa0093360:CDS 40.0%
ATATGTGTCTAGGCTTAGGA+AGG + chr1_2:76133857-76133876 Msa0093360:intron 40.0%
!! GCTGTTTCTATAAGCTAACC+TGG + chr1_2:76133986-76134005 Msa0093360:intron 40.0%
! ACAGAGGGAGTATAGTCTAT+AGG - chr1_2:76134097-76134116 None:intergenic 40.0%
CACTAGCTACTACTTTAGCA+AGG - chr1_2:76134261-76134280 None:intergenic 40.0%
! CTCAAGTTTTTGATCCTAGG+AGG + chr1_2:76134584-76134603 Msa0093360:CDS 40.0%
! AAGTTTTTGATCCTAGGAGG+TGG + chr1_2:76134587-76134606 Msa0093360:CDS 40.0%
ACTAGATTAGATCTTGCCAC+GGG - chr1_2:76134699-76134718 None:intergenic 40.0%
TACACAAGCTAAGGTAGCAA+GGG - chr1_2:76133254-76133273 None:intergenic 40.0%
AAAAAACGGACAGACGAGTA+TGG - chr1_2:76133430-76133449 None:intergenic 40.0%
!! GAGTGTGTACTTTGATTTGG+AGG + chr1_2:76133682-76133701 Msa0093360:CDS 40.0%
ATATGTGTCTAGGCTTAGGA+AGG + chr1_2:76133857-76133876 Msa0093360:intron 40.0%
!! GCTGTTTCTATAAGCTAACC+TGG + chr1_2:76133986-76134005 Msa0093360:intron 40.0%
! ACAGAGGGAGTATAGTCTAT+AGG - chr1_2:76134097-76134116 None:intergenic 40.0%
CACTAGCTACTACTTTAGCA+AGG - chr1_2:76134261-76134280 None:intergenic 40.0%
! CTCAAGTTTTTGATCCTAGG+AGG + chr1_2:76134584-76134603 Msa0093360:CDS 40.0%
! AAGTTTTTGATCCTAGGAGG+TGG + chr1_2:76134587-76134606 Msa0093360:CDS 40.0%
ACTAGATTAGATCTTGCCAC+GGG - chr1_2:76134699-76134718 None:intergenic 40.0%
GTACACAAGCTAAGGTAGCA+AGG - chr1_2:76133255-76133274 None:intergenic 45.0%
AGCTGGTTGTACACAAGCTA+AGG - chr1_2:76133263-76133282 None:intergenic 45.0%
!! TTAGCTTGTGTACAACCAGC+TGG + chr1_2:76133262-76133281 Msa0093360:CDS 45.0%
! ACCAGCTGGTCTCAATGTTA+AGG + chr1_2:76133276-76133295 Msa0093360:CDS 45.0%
! CCAGCTGGTCTCAATGTTAA+GGG + chr1_2:76133277-76133296 Msa0093360:CDS 45.0%
CTCAATGTTAAGGGTCTTGC+TGG + chr1_2:76133286-76133305 Msa0093360:CDS 45.0%
! GATTTGAAACTCTGGCGAGA+GGG - chr1_2:76133346-76133365 None:intergenic 45.0%
GAGGATATTGGCAACACTAC+AGG + chr1_2:76133701-76133720 Msa0093360:CDS 45.0%
ACAGGTCAGTGGGATTTGTA+CGG + chr1_2:76133719-76133738 Msa0093360:CDS 45.0%
TGAAGAGGGTTGTATGGTGA+GGG - chr1_2:76133755-76133774 None:intergenic 45.0%
CAAACCTGAAGAGGGTTGTA+TGG - chr1_2:76133761-76133780 None:intergenic 45.0%
CCAGTAGACAAACCTGAAGA+GGG - chr1_2:76133769-76133788 None:intergenic 45.0%
TCCAGTAGACAAACCTGAAG+AGG - chr1_2:76133770-76133789 None:intergenic 45.0%
AGTCTATAGGACAGCAAAGG+AGG - chr1_2:76134084-76134103 None:intergenic 45.0%
TAGAATGTCACCTGAAGCTG+TGG - chr1_2:76134636-76134655 None:intergenic 45.0%
AGCTGTGGACCTTTCTTGAT+TGG - chr1_2:76134659-76134678 None:intergenic 45.0%
CTAGATTAGATCTTGCCACG+GGG - chr1_2:76134698-76134717 None:intergenic 45.0%
GTACACAAGCTAAGGTAGCA+AGG - chr1_2:76133255-76133274 None:intergenic 45.0%
AGCTGGTTGTACACAAGCTA+AGG - chr1_2:76133263-76133282 None:intergenic 45.0%
!! TTAGCTTGTGTACAACCAGC+TGG + chr1_2:76133262-76133281 Msa0093360:CDS 45.0%
! ACCAGCTGGTCTCAATGTTA+AGG + chr1_2:76133276-76133295 Msa0093360:CDS 45.0%
! CCAGCTGGTCTCAATGTTAA+GGG + chr1_2:76133277-76133296 Msa0093360:CDS 45.0%
CTCAATGTTAAGGGTCTTGC+TGG + chr1_2:76133286-76133305 Msa0093360:CDS 45.0%
! GATTTGAAACTCTGGCGAGA+GGG - chr1_2:76133346-76133365 None:intergenic 45.0%
GAGGATATTGGCAACACTAC+AGG + chr1_2:76133701-76133720 Msa0093360:CDS 45.0%
ACAGGTCAGTGGGATTTGTA+CGG + chr1_2:76133719-76133738 Msa0093360:CDS 45.0%
TGAAGAGGGTTGTATGGTGA+GGG - chr1_2:76133755-76133774 None:intergenic 45.0%
CAAACCTGAAGAGGGTTGTA+TGG - chr1_2:76133761-76133780 None:intergenic 45.0%
CCAGTAGACAAACCTGAAGA+GGG - chr1_2:76133769-76133788 None:intergenic 45.0%
TCCAGTAGACAAACCTGAAG+AGG - chr1_2:76133770-76133789 None:intergenic 45.0%
AGTCTATAGGACAGCAAAGG+AGG - chr1_2:76134084-76134103 None:intergenic 45.0%
TAGAATGTCACCTGAAGCTG+TGG - chr1_2:76134636-76134655 None:intergenic 45.0%
AGCTGTGGACCTTTCTTGAT+TGG - chr1_2:76134659-76134678 None:intergenic 45.0%
CTAGATTAGATCTTGCCACG+GGG - chr1_2:76134698-76134717 None:intergenic 45.0%
AGGTAGCAAGGGAAGCCATA+TGG - chr1_2:76133243-76133262 None:intergenic 50.0%
CCCTTAACATTGAGACCAGC+TGG - chr1_2:76133280-76133299 None:intergenic 50.0%
CTTGCTGGCAGTTCCATTAC+TGG + chr1_2:76133301-76133320 Msa0093360:CDS 50.0%
! GGATTTGAAACTCTGGCGAG+AGG - chr1_2:76133347-76133366 None:intergenic 50.0%
GGCTCTGTGGTAGCAAAGTA+TGG + chr1_2:76133653-76133672 Msa0093360:CDS 50.0%
TTGGCAACACTACAGGTCAG+TGG + chr1_2:76133708-76133727 Msa0093360:CDS 50.0%
TGGCAACACTACAGGTCAGT+GGG + chr1_2:76133709-76133728 Msa0093360:CDS 50.0%
CTGAAGAGGGTTGTATGGTG+AGG - chr1_2:76133756-76133775 None:intergenic 50.0%
CTCACCATACAACCCTCTTC+AGG + chr1_2:76133754-76133773 Msa0093360:CDS 50.0%
! CCCTCTTCAGGTTTGTCTAC+TGG + chr1_2:76133766-76133785 Msa0093360:intron 50.0%
GCAGCTCCATTCACAAAGAG+AGG + chr1_2:76134554-76134573 Msa0093360:CDS 50.0%
CAAGAGTTGAACCACCTCCT+AGG - chr1_2:76134601-76134620 None:intergenic 50.0%
TACTTCAGTGCCACAGCTTC+AGG + chr1_2:76134623-76134642 Msa0093360:CDS 50.0%
AGGTAGCAAGGGAAGCCATA+TGG - chr1_2:76133243-76133262 None:intergenic 50.0%
CCCTTAACATTGAGACCAGC+TGG - chr1_2:76133280-76133299 None:intergenic 50.0%
CTTGCTGGCAGTTCCATTAC+TGG + chr1_2:76133301-76133320 Msa0093360:CDS 50.0%
! GGATTTGAAACTCTGGCGAG+AGG - chr1_2:76133347-76133366 None:intergenic 50.0%
GGCTCTGTGGTAGCAAAGTA+TGG + chr1_2:76133653-76133672 Msa0093360:CDS 50.0%
TTGGCAACACTACAGGTCAG+TGG + chr1_2:76133708-76133727 Msa0093360:CDS 50.0%
TGGCAACACTACAGGTCAGT+GGG + chr1_2:76133709-76133728 Msa0093360:CDS 50.0%
CTGAAGAGGGTTGTATGGTG+AGG - chr1_2:76133756-76133775 None:intergenic 50.0%
CTCACCATACAACCCTCTTC+AGG + chr1_2:76133754-76133773 Msa0093360:CDS 50.0%
! CCCTCTTCAGGTTTGTCTAC+TGG + chr1_2:76133766-76133785 Msa0093360:intron 50.0%
GCAGCTCCATTCACAAAGAG+AGG + chr1_2:76134554-76134573 Msa0093360:CDS 50.0%
CAAGAGTTGAACCACCTCCT+AGG - chr1_2:76134601-76134620 None:intergenic 50.0%
TACTTCAGTGCCACAGCTTC+AGG + chr1_2:76134623-76134642 Msa0093360:CDS 50.0%
! AACTTGCAGGAGTGGCTCTG+TGG + chr1_2:76133640-76133659 Msa0093360:intron 55.0%
CCACAGCTTCCACCAAAGCT+CGG + chr1_2:76134671-76134690 Msa0093360:CDS 55.0%
! AACTTGCAGGAGTGGCTCTG+TGG + chr1_2:76133640-76133659 Msa0093360:intron 55.0%
CCACAGCTTCCACCAAAGCT+CGG + chr1_2:76134671-76134690 Msa0093360:CDS 55.0%
! CCGAGCTTTGGTGGAAGCTG+TGG - chr1_2:76134674-76134693 None:intergenic 60.0%
! CCGAGCTTTGGTGGAAGCTG+TGG - chr1_2:76134674-76134693 None:intergenic 60.0%
TTGCCACGGGGACCGAGCTT+TGG - chr1_2:76134686-76134705 None:intergenic 65.0%
TTGCCACGGGGACCGAGCTT+TGG - chr1_2:76134686-76134705 None:intergenic 65.0%
! CCACGGGGACCGAGCTTTGG+TGG - chr1_2:76134683-76134702 None:intergenic 70.0%
CCACCAAAGCTCGGTCCCCG+TGG + chr1_2:76134680-76134699 Msa0093360:CDS 70.0%
! CCACGGGGACCGAGCTTTGG+TGG - chr1_2:76134683-76134702 None:intergenic 70.0%
CCACCAAAGCTCGGTCCCCG+TGG + chr1_2:76134680-76134699 Msa0093360:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 76133177 76135191 76133177 ID=Msa0093360;Name=Msa0093360
chr1_2 mRNA 76133177 76135191 76133177 ID=Msa0093360-mRNA-1;Parent=Msa0093360;Name=Msa0093360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=67|1|1|1|1|1|3|479|146
chr1_2 exon 76133177 76133377 76133177 ID=Msa0093360-mRNA-1:exon:26803;Parent=Msa0093360-mRNA-1
chr1_2 exon 76133649 76133775 76133649 ID=Msa0093360-mRNA-1:exon:26804;Parent=Msa0093360-mRNA-1
chr1_2 exon 76134533 76135191 76134533 ID=Msa0093360-mRNA-1:exon:26805;Parent=Msa0093360-mRNA-1
chr1_2 five_prime_UTR 76133177 76133243 76133177 ID=Msa0093360-mRNA-1:five_prime_utr;Parent=Msa0093360-mRNA-1
chr1_2 CDS 76133244 76133377 76133244 ID=Msa0093360-mRNA-1:cds;Parent=Msa0093360-mRNA-1
chr1_2 CDS 76133649 76133775 76133649 ID=Msa0093360-mRNA-1:cds;Parent=Msa0093360-mRNA-1
chr1_2 CDS 76134533 76134712 76134533 ID=Msa0093360-mRNA-1:cds;Parent=Msa0093360-mRNA-1
chr1_2 three_prime_UTR 76134713 76135191 76134713 ID=Msa0093360-mRNA-1:three_prime_utr;Parent=Msa0093360-mRNA-1
Gene Sequence

>Msa0093360

ATGGCTTCCCTTGCTACCTTAGCTTGTGTACAACCAGCTGGTCTCAATGTTAAGGGTCTTGCTGGCAGTTCCATTACTGGAACTAAGCTATCTTTCAAGCCCTCTCGCCAGAGTTTCAAATCCAAGAATTTAAGGAGTGGCTCTGTGGTAGCAAAGTATGGTGACAAGAGTGTGTACTTTGATTTGGAGGATATTGGCAACACTACAGGTCAGTGGGATTTGTACGGCTCAGATGCACCCTCACCATACAACCCTCTTCAGAGCAAGTTCTTTGAGACATTTGCAGCTCCATTCACAAAGAGAGGATTATTGCTCAAGTTTTTGATCCTAGGAGGTGGTTCAACTCTTGCATACTTCAGTGCCACAGCTTCAGGTGACATTCTACCAATCAAGAAAGGTCCACAGCTTCCACCAAAGCTCGGTCCCCGTGGCAAGATCTAA

Protein sequence

>Msa0093360

MASLATLACVQPAGLNVKGLAGSSITGTKLSFKPSRQSFKSKNLRSGSVVAKYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKI*