AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0232160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0232160 MtrunA17_Chr2g0279001 98.851 261 3 0 1 261 1 261 0.0 511
Msa0232160 MtrunA17_Chr3g0133901 42.396 217 98 6 39 249 40 235 1.75e-41 143
Msa0232160 MtrunA17_Chr2g0301081 45.745 188 69 5 73 249 72 237 2.32e-40 140
Msa0232160 MtrunA17_Chr8g0345631 38.835 206 97 5 49 248 55 237 1.34e-35 128
Msa0232160 MtrunA17_Chr3g0092091 36.471 255 117 9 12 259 17 233 6.46e-33 120
Msa0232160 MtrunA17_Chr3g0113311 32.800 250 78 7 60 257 60 271 2.48e-29 111
Msa0232160 MtrunA17_Chr4g0006181 33.591 259 82 7 51 257 106 326 3.15e-29 113
Msa0232160 MtrunA17_Chr5g0448421 35.567 194 91 8 75 249 69 247 4.47e-25 100
Msa0232160 MtrunA17_Chr5g0448411 35.567 194 91 8 75 249 67 245 1.65e-24 99.0
Msa0232160 MtrunA17_Chr6g0462031 33.673 196 80 6 59 243 48 204 2.51e-21 89.7
Msa0232160 MtrunA17_Chr2g0318521 34.615 208 86 7 73 259 63 241 6.87e-21 89.0
Msa0232160 MtrunA17_Chr4g0051941 33.816 207 87 8 73 259 67 243 4.62e-18 81.3
Msa0232160 MtrunA17_Chr6g0453181 33.333 207 88 8 73 259 66 242 1.34e-17 80.1
Msa0232160 MtrunA17_Chr5g0447531 32.850 207 89 7 73 259 66 242 1.45e-17 80.1
Msa0232160 MtrunA17_Chr6g0453151 32.850 207 89 8 73 259 133 309 3.80e-17 79.7
Msa0232160 MtrunA17_Chr6g0453141 32.850 207 89 8 73 259 66 242 4.37e-17 78.6
Msa0232160 MtrunA17_Chr1g0157481 32.035 231 115 7 50 256 96 308 5.84e-17 79.3
Msa0232160 MtrunA17_Chr6g0453161 32.850 207 89 8 73 259 68 244 9.29e-17 79.3
Msa0232160 MtrunA17_Chr6g0453161 33.333 207 88 8 73 259 333 509 1.05e-16 79.3
Msa0232160 MtrunA17_Chr6g0476641 32.569 218 122 8 40 249 52 252 5.42e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0232160 AT1G15820.1 82.375 261 43 1 1 261 1 258 4.92e-152 424
Msa0232160 AT1G45474.2 37.308 260 126 9 1 254 1 229 8.04e-38 134
Msa0232160 AT1G45474.1 37.308 260 126 9 1 254 1 229 8.04e-38 134
Msa0232160 AT1G19150.1 43.716 183 80 4 73 249 75 240 2.72e-37 132
Msa0232160 AT3G61470.1 38.140 215 104 5 40 248 35 226 1.16e-35 128
Msa0232160 AT3G47470.1 34.263 251 119 9 17 259 22 234 1.31e-29 112
Msa0232160 AT5G01530.1 34.538 249 73 8 60 256 58 268 5.15e-29 111
Msa0232160 AT3G08940.2 32.721 272 90 9 38 257 36 266 2.28e-28 109
Msa0232160 AT3G54890.1 36.916 214 83 7 59 259 47 221 5.24e-26 102
Msa0232160 AT1G61520.3 33.333 240 125 9 29 248 18 242 2.77e-25 101
Msa0232160 AT1G61520.1 33.333 240 125 9 29 248 18 242 2.77e-25 101
Msa0232160 AT3G54890.4 35.979 189 71 6 59 236 47 196 1.40e-22 92.8
Msa0232160 AT5G54270.1 31.541 279 122 10 13 259 1 242 2.19e-22 93.6
Msa0232160 AT1G61520.2 34.392 189 90 8 79 248 14 187 1.27e-21 90.5
Msa0232160 AT2G34420.1 34.783 207 86 9 73 259 65 242 4.20e-18 81.6
Msa0232160 AT2G34430.1 34.783 207 86 9 73 259 66 243 4.35e-18 81.6
Msa0232160 AT3G27690.2 31.200 250 114 10 36 259 58 275 4.84e-18 82.0
Msa0232160 AT3G27690.1 31.200 250 114 10 36 259 26 243 4.96e-18 81.6
Msa0232160 AT1G29920.1 34.300 207 87 9 73 259 67 244 4.98e-18 81.6
Msa0232160 AT1G29910.1 34.300 207 87 9 73 259 67 244 4.98e-18 81.6
Msa0232160 AT1G29930.1 34.300 207 87 9 73 259 67 244 5.62e-18 81.6
Msa0232160 AT2G05070.1 32.850 207 89 8 73 259 66 242 3.37e-17 79.3
Msa0232160 AT2G05100.1 32.850 207 89 8 73 259 66 242 3.66e-17 79.3
Msa0232160 AT3G54890.3 62.295 61 23 0 73 133 55 115 8.27e-17 76.3
Msa0232160 AT2G05100.2 32.653 196 83 7 73 249 66 231 1.58e-16 78.2
Msa0232160 AT3G54890.2 54.667 75 28 1 59 133 47 115 2.07e-16 75.9
Msa0232160 AT4G10340.1 31.383 188 92 6 73 249 82 243 6.89e-15 73.2

Find 123 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATATCATGGATAGATTT+TGG 0.143281 2_2:+4481579 None:intergenic
TTCTCCTTTGGTACTCTTCT+AGG 0.198477 2_2:-4480713 Msa0232160:CDS
GTTCTTTGTGACTTTGAAAA+AGG 0.201787 2_2:+4480063 None:intergenic
TTGGGATCTTCCTTCTTATC+TGG 0.220925 2_2:-4481342 Msa0232160:CDS
TACGATCCATCGAGCCATTC+TGG 0.222067 2_2:+4481162 None:intergenic
AAACAAATGTAAAGATAAAT+TGG 0.228865 2_2:-4480110 Msa0232160:three_prime_UTR
CTCTCTAGCTTCTCTGTATC+TGG 0.252195 2_2:+4480485 None:intergenic
ATTTCCATCCTCAGCTGATT+TGG 0.295576 2_2:+4481617 None:intergenic
TTCGACCCATTGTCCCTTGC+TGG 0.300502 2_2:-4480533 Msa0232160:CDS
CATTCGATTGACTGTGAATC+CGG 0.308951 2_2:+4480632 None:intergenic
CCAGGGATCCATGACTTCTT+TGG 0.326294 2_2:+4481213 None:intergenic
TGGGCAATGGCTGCAGTTCT+AGG 0.329531 2_2:-4480809 Msa0232160:CDS
GTTAGACTTTGTATGCATAT+TGG 0.335078 2_2:+4480155 None:intergenic
AAGACTCCCCTTGGTGCTCT+TGG 0.346873 2_2:-4480383 Msa0232160:CDS
TTAGATTTCATTGTCCTACT+TGG 0.364923 2_2:-4481542 Msa0232160:five_prime_UTR
GATGGAAATCCATTTCCTAT+TGG 0.370864 2_2:-4481603 Msa0232160:five_prime_UTR
TCTAGGCATCTTTGTTGGTC+AGG 0.375207 2_2:-4480792 Msa0232160:CDS
GCAATTGCTCCATTCTCCTT+TGG 0.375390 2_2:-4480725 Msa0232160:CDS
GGTGCTGTGTTGAATGGTTT+GGG 0.386787 2_2:-4481360 Msa0232160:CDS
AGAGAAGCTGAGCTTATTCA+TGG 0.388496 2_2:-4480836 Msa0232160:CDS
TATGGATCAAACAGATATAT+AGG 0.394006 2_2:+4480187 None:intergenic
CTGTACCATTTGAGAAATGC+TGG 0.410852 2_2:+4480857 None:intergenic
TTGTTAGCTACTACTGCTAT+TGG 0.410886 2_2:-4481300 Msa0232160:CDS
ACCAGCTGCAGCACCACCTT+TGG 0.411073 2_2:+4481275 None:intergenic
TGGTGCTGTGTTGAATGGTT+TGG 0.411606 2_2:-4481361 Msa0232160:CDS
TGGATCCCTGGTGTTAGATT+TGG 0.414159 2_2:-4481201 Msa0232160:CDS
CCCTGGGTAGCCTTGTTCTC+CGG 0.423395 2_2:+4480565 None:intergenic
TTTAATTCATGTTCTAATGT+TGG 0.424794 2_2:-4480266 Msa0232160:three_prime_UTR
GAGAATGGAGCAATTGCATT+GGG 0.424903 2_2:+4480731 None:intergenic
CCTTCTTATCTGGAGGTAAG+AGG 0.427547 2_2:-4481332 Msa0232160:CDS
ACGATCCATCGAGCCATTCT+GGG 0.431920 2_2:+4481163 None:intergenic
AGGCACTCAGTTGATTCTCA+TGG 0.436916 2_2:-4480693 Msa0232160:CDS
AATCTAAACAAGAAATCTTA+AGG 0.438847 2_2:+4481558 None:intergenic
GAAGCTAGAGAGATTGAAAC+TGG 0.439049 2_2:-4480474 Msa0232160:CDS
TGTAGATTACCAGGTGACTT+TGG 0.442105 2_2:-4480908 Msa0232160:intron
CTCAGTTGATTCTCATGGGG+TGG 0.444041 2_2:-4480688 Msa0232160:CDS
CAAATGGCAGCTGCAACATC+TGG 0.450920 2_2:-4481381 Msa0232160:CDS
GCAGTTCTAGGCATCTTTGT+TGG 0.454175 2_2:-4480797 Msa0232160:CDS
GCATGCTAGGCTTGCTATGT+TGG 0.454270 2_2:-4480441 Msa0232160:CDS
GGCACTCAGTTGATTCTCAT+GGG 0.454921 2_2:-4480692 Msa0232160:CDS
GCATATTGGCTACACATGTA+TGG 0.459520 2_2:+4480169 None:intergenic
GGAGTTCCATGGTTTGAGGC+TGG 0.459578 2_2:-4480761 Msa0232160:CDS
GCATCTTTGTTGGTCAGGCA+TGG 0.465448 2_2:-4480787 Msa0232160:CDS
ACATCTGGTGCTGTGTTGAA+TGG 0.470993 2_2:-4481366 Msa0232160:CDS
AGAAATCTTAAGGTATATCA+TGG 0.471155 2_2:+4481568 None:intergenic
ATCCCTGGTGTTAGATTTGG+TGG 0.473436 2_2:-4481198 Msa0232160:CDS
AGTGTAAAAGAGAAGACAAA+TGG 0.474087 2_2:-4481397 Msa0232160:exon
GCCAAAGGTGGTGCTGCAGC+TGG 0.476963 2_2:-4481276 Msa0232160:CDS
GAGAACTTTGCTAATGCAAC+CGG 0.479444 2_2:-4480584 Msa0232160:CDS
GGTTGCATTAGCAAAGTTCT+CGG 0.480106 2_2:+4480586 None:intergenic
GGTCCTTGCCAAGGCCTAGT+GGG 0.484093 2_2:+4480879 None:intergenic
GGGTCCTTGCCAAGGCCTAG+TGG 0.496533 2_2:+4480878 None:intergenic
AACATGAATTAAATTTGTCA+TGG 0.501644 2_2:+4480276 None:intergenic
CCGGAGAACAAGGCTACCCA+GGG 0.503852 2_2:-4480565 Msa0232160:CDS
AGGACCCAGCATTTCTCAAA+TGG 0.509475 2_2:-4480862 Msa0232160:CDS
CTTGCTGGTACCATCGAAAA+CGG 0.510039 2_2:-4480518 Msa0232160:CDS
AGAAGAGTACCAAAGGAGAA+TGG 0.511148 2_2:+4480716 None:intergenic
CCTCTTACCTCCAGATAAGA+AGG 0.513918 2_2:+4481332 None:intergenic
AGGCATGGAGTGGAGTTCCA+TGG 0.514110 2_2:-4480772 Msa0232160:CDS
TTCTACTTTGAAGCTGGACA+AGG 0.520216 2_2:-4480407 Msa0232160:CDS
ACCGGAGAACAAGGCTACCC+AGG 0.521424 2_2:-4480566 Msa0232160:CDS
TTTGTTGGTCAGGCATGGAG+TGG 0.524108 2_2:-4480782 Msa0232160:CDS
CCAAAGAAGTCATGGATCCC+TGG 0.525917 2_2:-4481213 Msa0232160:CDS
TGGCTGAGATTAAGCATGCT+AGG 0.527131 2_2:-4480454 Msa0232160:CDS
ATTCGATTGACTGTGAATCC+GGG 0.527520 2_2:+4480633 None:intergenic
TGGTACCAGCAAGGGACAAT+GGG 0.528256 2_2:+4480528 None:intergenic
TGTCATGGAGTAGCACACTT+AGG 0.529326 2_2:+4480291 None:intergenic
CAGTAGTAGCTAACAAGGCT+TGG 0.533833 2_2:+4481307 None:intergenic
GGATTCACAGTCAATCGAAT+GGG 0.537483 2_2:-4480630 Msa0232160:CDS
GGATCTTCCTTCTTATCTGG+AGG 0.538000 2_2:-4481339 Msa0232160:CDS
AGTAATAGTCTAATAGAGAC+TGG 0.538062 2_2:+4481436 None:intergenic
CTTCTGCACCAAAGAAGTCA+TGG 0.541838 2_2:-4481221 Msa0232160:CDS
TACCTTCTTGCTTATGACAA+AGG 0.544227 2_2:+4480133 None:intergenic
GGAGAATGGAGCAATTGCAT+TGG 0.544242 2_2:+4480730 None:intergenic
CTGAGCTTATTCATGGAAGG+TGG 0.544781 2_2:-4480829 Msa0232160:CDS
TCAGTTGATTCTCATGGGGT+GGG 0.544833 2_2:-4480687 Msa0232160:CDS
GAAACCTCGTCGACCCAGAA+TGG 0.547423 2_2:-4481176 Msa0232160:CDS
GAGTGGAGTTCCATGGTTTG+AGG 0.550527 2_2:-4480765 Msa0232160:CDS
TCAGCTCCAGCCTCAAACCA+TGG 0.554373 2_2:+4480755 None:intergenic
ATGGTACCAGCAAGGGACAA+TGG 0.556874 2_2:+4480527 None:intergenic
AACCTTTGTCATAAGCAAGA+AGG 0.557195 2_2:-4480135 Msa0232160:three_prime_UTR
GGACAAGGGAAGACTCCCCT+TGG 0.557324 2_2:-4480392 Msa0232160:CDS
GTGGGTAGAGAGCAAGAGAT+GGG 0.560152 2_2:-4480669 Msa0232160:CDS
CGGATTCACAGTCAATCGAA+TGG 0.566881 2_2:-4480631 Msa0232160:CDS
GCTAATGCAACCGGAGAACA+AGG 0.571637 2_2:-4480575 Msa0232160:CDS
GAAGCCAAATCAGCTGAGGA+TGG 0.573546 2_2:-4481621 Msa0232160:five_prime_UTR
GAACATGGTGTCCACGTGGT+TGG 0.584310 2_2:-4481643 Msa0232160:five_prime_UTR
TTACAAGCCAAGAGCACCAA+GGG 0.584331 2_2:+4480376 None:intergenic
TATTCATGGAAGGTGGGCAA+TGG 0.584518 2_2:-4480822 Msa0232160:CDS
CAATCGAATGGGCCACTCCA+TGG 0.585992 2_2:-4480619 Msa0232160:CDS
GGTGGGTAGAGAGCAAGAGA+TGG 0.588337 2_2:-4480670 Msa0232160:CDS
TTTCCACCAAATCTAACACC+AGG 0.597681 2_2:+4481195 None:intergenic
TGACCCACTAGGCCTTGGCA+AGG 0.602653 2_2:-4480882 Msa0232160:CDS
GAAATGCTGGGTCCTTGCCA+AGG 0.604301 2_2:+4480870 None:intergenic
TGAGCTTATTCATGGAAGGT+GGG 0.606190 2_2:-4480828 Msa0232160:CDS
ATAGAAAGAGCACAGTGGAG+TGG 0.606414 2_2:-4481665 Msa0232160:five_prime_UTR
AAGCTGAGCTTATTCATGGA+AGG 0.607522 2_2:-4480832 Msa0232160:CDS
AGTGCCTAGAAGAGTACCAA+AGG 0.608047 2_2:+4480709 None:intergenic
TGTACCATTTGAGAAATGCT+GGG 0.608952 2_2:+4480858 None:intergenic
GAGCACAGTGGAGTGGAACA+TGG 0.610835 2_2:-4481658 Msa0232160:five_prime_UTR
ATGGGTCGATTTCTTCAACC+CGG 0.612388 2_2:-4480651 Msa0232160:CDS
CAGATATATAGGTAAATGCA+AGG 0.612552 2_2:+4480198 None:intergenic
AATAGCAGTAGTAGCTAACA+AGG 0.617085 2_2:+4481302 None:intergenic
GTCGACCCAGAATGGCTCGA+TGG 0.628418 2_2:-4481168 Msa0232160:CDS
ACTACTGCTATTGGAGCCAA+AGG 0.636609 2_2:-4481291 Msa0232160:CDS
CGAGCCATTCTGGGTCGACG+AGG 0.636930 2_2:+4481172 None:intergenic
ACTGCTATTGGAGCCAAAGG+TGG 0.639021 2_2:-4481288 Msa0232160:CDS
GCACTCAGTTGATTCTCATG+GGG 0.642271 2_2:-4480691 Msa0232160:CDS
GGGTCAAAACCAAAGTCACC+TGG 0.643002 2_2:+4480899 None:intergenic
GTGTGAGAGAGAATCTGAAA+GGG 0.647375 2_2:+4481506 None:intergenic
TTTACAAGCCAAGAGCACCA+AGG 0.650086 2_2:+4480375 None:intergenic
TGTGTGAGAGAGAATCTGAA+AGG 0.656017 2_2:+4481505 None:intergenic
TCTACTTTGAAGCTGGACAA+GGG 0.657323 2_2:-4480406 Msa0232160:CDS
GTTGGAAGCCAAATCAGCTG+AGG 0.676509 2_2:-4481625 Msa0232160:five_prime_UTR
AGAATGGAGCAATTGCATTG+GGG 0.695433 2_2:+4480732 None:intergenic
TGCATTAGCAAAGTTCTCGG+CGG 0.703055 2_2:+4480589 None:intergenic
TGATTTGGCTTCCAACCACG+TGG 0.709465 2_2:+4481632 None:intergenic
TTCCACCAAATCTAACACCA+GGG 0.730328 2_2:+4481196 None:intergenic
GGAGAACAAGGCTACCCAGG+GGG 0.731673 2_2:-4480563 Msa0232160:CDS
AGTGGAACATGGTGTCCACG+TGG 0.737131 2_2:-4481647 Msa0232160:five_prime_UTR
CGGAGAACAAGGCTACCCAG+GGG 0.738163 2_2:-4480564 Msa0232160:CDS
TACAAGCCAAGAGCACCAAG+GGG 0.741553 2_2:+4480377 None:intergenic
AAAAGATAGAAAGAGCACAG+TGG 0.743548 2_2:-4481670 Msa0232160:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATAATCAATTCTAA+AGG + chr2_2:4480642-4480661 None:intergenic 15.0%
!! AAACAAATGTAAAGATAAAT+TGG - chr2_2:4481642-4481661 Msa0232160:five_prime_UTR 15.0%
!! GAAAAAATAATCAATTCTAA+AGG + chr2_2:4480642-4480661 None:intergenic 15.0%
!! AAACAAATGTAAAGATAAAT+TGG - chr2_2:4481642-4481661 Msa0232160:five_prime_UTR 15.0%
!! AATCTAAACAAGAAATCTTA+AGG + chr2_2:4480197-4480216 None:intergenic 20.0%
!!! TAAAATCGATTTAAGTTAAG+TGG + chr2_2:4480619-4480638 None:intergenic 20.0%
!! AATAAATTTAAGTAAACGTG+TGG + chr2_2:4480705-4480724 None:intergenic 20.0%
!! AACATGAATTAAATTTGTCA+TGG + chr2_2:4481479-4481498 None:intergenic 20.0%
!! TTTAATTCATGTTCTAATGT+TGG - chr2_2:4481486-4481505 Msa0232160:five_prime_UTR 20.0%
!! AATCTAAACAAGAAATCTTA+AGG + chr2_2:4480197-4480216 None:intergenic 20.0%
!!! TAAAATCGATTTAAGTTAAG+TGG + chr2_2:4480619-4480638 None:intergenic 20.0%
!! AATAAATTTAAGTAAACGTG+TGG + chr2_2:4480705-4480724 None:intergenic 20.0%
!! AACATGAATTAAATTTGTCA+TGG + chr2_2:4481479-4481498 None:intergenic 20.0%
!! TTTAATTCATGTTCTAATGT+TGG - chr2_2:4481486-4481505 Msa0232160:five_prime_UTR 20.0%
! AGAAATCTTAAGGTATATCA+TGG + chr2_2:4480187-4480206 None:intergenic 25.0%
!!! TTTTTCAATTGTAGATTACC+AGG - chr2_2:4480835-4480854 Msa0232160:CDS 25.0%
! TATGGATCAAACAGATATAT+AGG + chr2_2:4481568-4481587 None:intergenic 25.0%
! AGAAATCTTAAGGTATATCA+TGG + chr2_2:4480187-4480206 None:intergenic 25.0%
!!! TTTTTCAATTGTAGATTACC+AGG - chr2_2:4480835-4480854 Msa0232160:CDS 25.0%
! TATGGATCAAACAGATATAT+AGG + chr2_2:4481568-4481587 None:intergenic 25.0%
! GGTATATCATGGATAGATTT+TGG + chr2_2:4480176-4480195 None:intergenic 30.0%
TTAGATTTCATTGTCCTACT+TGG - chr2_2:4480210-4480229 Msa0232160:three_prime_UTR 30.0%
AGTAATAGTCTAATAGAGAC+TGG + chr2_2:4480319-4480338 None:intergenic 30.0%
AGTGTAAAAGAGAAGACAAA+TGG - chr2_2:4480355-4480374 Msa0232160:three_prime_UTR 30.0%
AATTTAAGTAAACGTGTGGA+AGG + chr2_2:4480701-4480720 None:intergenic 30.0%
CAGATATATAGGTAAATGCA+AGG + chr2_2:4481557-4481576 None:intergenic 30.0%
GTTAGACTTTGTATGCATAT+TGG + chr2_2:4481600-4481619 None:intergenic 30.0%
! GGTATATCATGGATAGATTT+TGG + chr2_2:4480176-4480195 None:intergenic 30.0%
TTAGATTTCATTGTCCTACT+TGG - chr2_2:4480210-4480229 Msa0232160:three_prime_UTR 30.0%
AGTAATAGTCTAATAGAGAC+TGG + chr2_2:4480319-4480338 None:intergenic 30.0%
AGTGTAAAAGAGAAGACAAA+TGG - chr2_2:4480355-4480374 Msa0232160:three_prime_UTR 30.0%
AATTTAAGTAAACGTGTGGA+AGG + chr2_2:4480701-4480720 None:intergenic 30.0%
CAGATATATAGGTAAATGCA+AGG + chr2_2:4481557-4481576 None:intergenic 30.0%
GTTAGACTTTGTATGCATAT+TGG + chr2_2:4481600-4481619 None:intergenic 30.0%
! AAAAGATAGAAAGAGCACAG+TGG - chr2_2:4480082-4480101 Msa0232160:three_prime_UTR 35.0%
GATGGAAATCCATTTCCTAT+TGG - chr2_2:4480149-4480168 Msa0232160:three_prime_UTR 35.0%
! GATTTTGGACCAATAGGAAA+TGG + chr2_2:4480161-4480180 None:intergenic 35.0%
! TGGATAGATTTTGGACCAAT+AGG + chr2_2:4480167-4480186 None:intergenic 35.0%
! TCTGAAAGGGTTTTCATAGA+AGG + chr2_2:4480236-4480255 None:intergenic 35.0%
AATAGCAGTAGTAGCTAACA+AGG + chr2_2:4480453-4480472 None:intergenic 35.0%
TTGTTAGCTACTACTGCTAT+TGG - chr2_2:4480452-4480471 Msa0232160:CDS 35.0%
! GCAGCAACAATAAGTCTTTT+AGG + chr2_2:4480506-4480525 None:intergenic 35.0%
TGTACCATTTGAGAAATGCT+GGG + chr2_2:4480897-4480916 None:intergenic 35.0%
! AATGTAAACTCCGTTTTCGA+TGG + chr2_2:4481247-4481266 None:intergenic 35.0%
!!! CTGATTTTCTACTTTGAAGC+TGG - chr2_2:4481339-4481358 Msa0232160:CDS 35.0%
AACCTTTGTCATAAGCAAGA+AGG - chr2_2:4481617-4481636 Msa0232160:five_prime_UTR 35.0%
TACCTTCTTGCTTATGACAA+AGG + chr2_2:4481622-4481641 None:intergenic 35.0%
! AAAAGATAGAAAGAGCACAG+TGG - chr2_2:4480082-4480101 Msa0232160:three_prime_UTR 35.0%
GATGGAAATCCATTTCCTAT+TGG - chr2_2:4480149-4480168 Msa0232160:three_prime_UTR 35.0%
! GATTTTGGACCAATAGGAAA+TGG + chr2_2:4480161-4480180 None:intergenic 35.0%
! TGGATAGATTTTGGACCAAT+AGG + chr2_2:4480167-4480186 None:intergenic 35.0%
! TCTGAAAGGGTTTTCATAGA+AGG + chr2_2:4480236-4480255 None:intergenic 35.0%
AATAGCAGTAGTAGCTAACA+AGG + chr2_2:4480453-4480472 None:intergenic 35.0%
TTGTTAGCTACTACTGCTAT+TGG - chr2_2:4480452-4480471 Msa0232160:CDS 35.0%
! GCAGCAACAATAAGTCTTTT+AGG + chr2_2:4480506-4480525 None:intergenic 35.0%
TGTACCATTTGAGAAATGCT+GGG + chr2_2:4480897-4480916 None:intergenic 35.0%
! AATGTAAACTCCGTTTTCGA+TGG + chr2_2:4481247-4481266 None:intergenic 35.0%
!!! CTGATTTTCTACTTTGAAGC+TGG - chr2_2:4481339-4481358 Msa0232160:CDS 35.0%
AACCTTTGTCATAAGCAAGA+AGG - chr2_2:4481617-4481636 Msa0232160:five_prime_UTR 35.0%
TACCTTCTTGCTTATGACAA+AGG + chr2_2:4481622-4481641 None:intergenic 35.0%
ATTTCCATCCTCAGCTGATT+TGG + chr2_2:4480138-4480157 None:intergenic 40.0%
! GTTTTCATAGAAGGCCAAGT+AGG + chr2_2:4480227-4480246 None:intergenic 40.0%
GTGTGAGAGAGAATCTGAAA+GGG + chr2_2:4480249-4480268 None:intergenic 40.0%
TGTGTGAGAGAGAATCTGAA+AGG + chr2_2:4480250-4480269 None:intergenic 40.0%
!!! GACTGGTTTTGTAGTTCACT+TGG + chr2_2:4480302-4480321 None:intergenic 40.0%
TTGGGATCTTCCTTCTTATC+TGG - chr2_2:4480410-4480429 Msa0232160:CDS 40.0%
TTCCACCAAATCTAACACCA+GGG + chr2_2:4480559-4480578 None:intergenic 40.0%
TTTCCACCAAATCTAACACC+AGG + chr2_2:4480560-4480579 None:intergenic 40.0%
TGTAGATTACCAGGTGACTT+TGG - chr2_2:4480844-4480863 Msa0232160:CDS 40.0%
CTGTACCATTTGAGAAATGC+TGG + chr2_2:4480898-4480917 None:intergenic 40.0%
AGAGAAGCTGAGCTTATTCA+TGG - chr2_2:4480916-4480935 Msa0232160:intron 40.0%
AAGCTGAGCTTATTCATGGA+AGG - chr2_2:4480920-4480939 Msa0232160:intron 40.0%
TGAGCTTATTCATGGAAGGT+GGG - chr2_2:4480924-4480943 Msa0232160:intron 40.0%
AGAATGGAGCAATTGCATTG+GGG + chr2_2:4481023-4481042 None:intergenic 40.0%
GAGAATGGAGCAATTGCATT+GGG + chr2_2:4481024-4481043 None:intergenic 40.0%
!! AGAAGAGTACCAAAGGAGAA+TGG + chr2_2:4481039-4481058 None:intergenic 40.0%
TTCTCCTTTGGTACTCTTCT+AGG - chr2_2:4481039-4481058 Msa0232160:intron 40.0%
ATTCGATTGACTGTGAATCC+GGG + chr2_2:4481122-4481141 None:intergenic 40.0%
CATTCGATTGACTGTGAATC+CGG + chr2_2:4481123-4481142 None:intergenic 40.0%
GGATTCACAGTCAATCGAAT+GGG - chr2_2:4481122-4481141 Msa0232160:intron 40.0%
GGTTGCATTAGCAAAGTTCT+CGG + chr2_2:4481169-4481188 None:intergenic 40.0%
GAGAACTTTGCTAATGCAAC+CGG - chr2_2:4481168-4481187 Msa0232160:CDS 40.0%
GAAGCTAGAGAGATTGAAAC+TGG - chr2_2:4481278-4481297 Msa0232160:CDS 40.0%
!! TTCTACTTTGAAGCTGGACA+AGG - chr2_2:4481345-4481364 Msa0232160:CDS 40.0%
!! TCTACTTTGAAGCTGGACAA+GGG - chr2_2:4481346-4481365 Msa0232160:CDS 40.0%
! GCATATTGGCTACACATGTA+TGG + chr2_2:4481586-4481605 None:intergenic 40.0%
ATTTCCATCCTCAGCTGATT+TGG + chr2_2:4480138-4480157 None:intergenic 40.0%
! GTTTTCATAGAAGGCCAAGT+AGG + chr2_2:4480227-4480246 None:intergenic 40.0%
GTGTGAGAGAGAATCTGAAA+GGG + chr2_2:4480249-4480268 None:intergenic 40.0%
TGTGTGAGAGAGAATCTGAA+AGG + chr2_2:4480250-4480269 None:intergenic 40.0%
!!! GACTGGTTTTGTAGTTCACT+TGG + chr2_2:4480302-4480321 None:intergenic 40.0%
TTGGGATCTTCCTTCTTATC+TGG - chr2_2:4480410-4480429 Msa0232160:CDS 40.0%
TTCCACCAAATCTAACACCA+GGG + chr2_2:4480559-4480578 None:intergenic 40.0%
TTTCCACCAAATCTAACACC+AGG + chr2_2:4480560-4480579 None:intergenic 40.0%
TGTAGATTACCAGGTGACTT+TGG - chr2_2:4480844-4480863 Msa0232160:CDS 40.0%
CTGTACCATTTGAGAAATGC+TGG + chr2_2:4480898-4480917 None:intergenic 40.0%
AGAGAAGCTGAGCTTATTCA+TGG - chr2_2:4480916-4480935 Msa0232160:intron 40.0%
AAGCTGAGCTTATTCATGGA+AGG - chr2_2:4480920-4480939 Msa0232160:intron 40.0%
TGAGCTTATTCATGGAAGGT+GGG - chr2_2:4480924-4480943 Msa0232160:intron 40.0%
AGAATGGAGCAATTGCATTG+GGG + chr2_2:4481023-4481042 None:intergenic 40.0%
GAGAATGGAGCAATTGCATT+GGG + chr2_2:4481024-4481043 None:intergenic 40.0%
!! AGAAGAGTACCAAAGGAGAA+TGG + chr2_2:4481039-4481058 None:intergenic 40.0%
TTCTCCTTTGGTACTCTTCT+AGG - chr2_2:4481039-4481058 Msa0232160:intron 40.0%
ATTCGATTGACTGTGAATCC+GGG + chr2_2:4481122-4481141 None:intergenic 40.0%
CATTCGATTGACTGTGAATC+CGG + chr2_2:4481123-4481142 None:intergenic 40.0%
GGATTCACAGTCAATCGAAT+GGG - chr2_2:4481122-4481141 Msa0232160:intron 40.0%
GGTTGCATTAGCAAAGTTCT+CGG + chr2_2:4481169-4481188 None:intergenic 40.0%
GAGAACTTTGCTAATGCAAC+CGG - chr2_2:4481168-4481187 Msa0232160:CDS 40.0%
GAAGCTAGAGAGATTGAAAC+TGG - chr2_2:4481278-4481297 Msa0232160:CDS 40.0%
!! TTCTACTTTGAAGCTGGACA+AGG - chr2_2:4481345-4481364 Msa0232160:CDS 40.0%
!! TCTACTTTGAAGCTGGACAA+GGG - chr2_2:4481346-4481365 Msa0232160:CDS 40.0%
! GCATATTGGCTACACATGTA+TGG + chr2_2:4481586-4481605 None:intergenic 40.0%
! ATAGAAAGAGCACAGTGGAG+TGG - chr2_2:4480087-4480106 Msa0232160:three_prime_UTR 45.0%
!! ACATCTGGTGCTGTGTTGAA+TGG - chr2_2:4480386-4480405 Msa0232160:CDS 45.0%
!! TGGTGCTGTGTTGAATGGTT+TGG - chr2_2:4480391-4480410 Msa0232160:CDS 45.0%
! GGTGCTGTGTTGAATGGTTT+GGG - chr2_2:4480392-4480411 Msa0232160:CDS 45.0%
GGATCTTCCTTCTTATCTGG+AGG - chr2_2:4480413-4480432 Msa0232160:CDS 45.0%
CCTCTTACCTCCAGATAAGA+AGG + chr2_2:4480423-4480442 None:intergenic 45.0%
CCTTCTTATCTGGAGGTAAG+AGG - chr2_2:4480420-4480439 Msa0232160:CDS 45.0%
CAGTAGTAGCTAACAAGGCT+TGG + chr2_2:4480448-4480467 None:intergenic 45.0%
ACTACTGCTATTGGAGCCAA+AGG - chr2_2:4480461-4480480 Msa0232160:CDS 45.0%
CTTCTGCACCAAAGAAGTCA+TGG - chr2_2:4480531-4480550 Msa0232160:CDS 45.0%
! TGGATCCCTGGTGTTAGATT+TGG - chr2_2:4480551-4480570 Msa0232160:CDS 45.0%
! ATCCCTGGTGTTAGATTTGG+TGG - chr2_2:4480554-4480573 Msa0232160:CDS 45.0%
!!! GACTTTGGTTTTGACCCACT+AGG - chr2_2:4480859-4480878 Msa0232160:CDS 45.0%
AGGACCCAGCATTTCTCAAA+TGG - chr2_2:4480890-4480909 Msa0232160:CDS 45.0%
CTGAGCTTATTCATGGAAGG+TGG - chr2_2:4480923-4480942 Msa0232160:intron 45.0%
TATTCATGGAAGGTGGGCAA+TGG - chr2_2:4480930-4480949 Msa0232160:intron 45.0%
!! GCAGTTCTAGGCATCTTTGT+TGG - chr2_2:4480955-4480974 Msa0232160:intron 45.0%
TCTAGGCATCTTTGTTGGTC+AGG - chr2_2:4480960-4480979 Msa0232160:intron 45.0%
GGAGAATGGAGCAATTGCAT+TGG + chr2_2:4481025-4481044 None:intergenic 45.0%
GCAATTGCTCCATTCTCCTT+TGG - chr2_2:4481027-4481046 Msa0232160:intron 45.0%
!! AGTGCCTAGAAGAGTACCAA+AGG + chr2_2:4481046-4481065 None:intergenic 45.0%
! AGGCACTCAGTTGATTCTCA+TGG - chr2_2:4481059-4481078 Msa0232160:intron 45.0%
! GGCACTCAGTTGATTCTCAT+GGG - chr2_2:4481060-4481079 Msa0232160:intron 45.0%
! GCACTCAGTTGATTCTCATG+GGG - chr2_2:4481061-4481080 Msa0232160:intron 45.0%
! TCAGTTGATTCTCATGGGGT+GGG - chr2_2:4481065-4481084 Msa0232160:intron 45.0%
! ATGGGTCGATTTCTTCAACC+CGG - chr2_2:4481101-4481120 Msa0232160:intron 45.0%
CGGATTCACAGTCAATCGAA+TGG - chr2_2:4481121-4481140 Msa0232160:intron 45.0%
TGCATTAGCAAAGTTCTCGG+CGG + chr2_2:4481166-4481185 None:intergenic 45.0%
! GTTTTCGATGGTACCAGCAA+GGG + chr2_2:4481235-4481254 None:intergenic 45.0%
CTTGCTGGTACCATCGAAAA+CGG - chr2_2:4481234-4481253 Msa0232160:CDS 45.0%
! CTCTCTAGCTTCTCTGTATC+TGG + chr2_2:4481270-4481289 None:intergenic 45.0%
TGGCTGAGATTAAGCATGCT+AGG - chr2_2:4481298-4481317 Msa0232160:CDS 45.0%
!! TTACAAGCCAAGAGCACCAA+GGG + chr2_2:4481379-4481398 None:intergenic 45.0%
!! TTTACAAGCCAAGAGCACCA+AGG + chr2_2:4481380-4481399 None:intergenic 45.0%
TGTCATGGAGTAGCACACTT+AGG + chr2_2:4481464-4481483 None:intergenic 45.0%
! ATAGAAAGAGCACAGTGGAG+TGG - chr2_2:4480087-4480106 Msa0232160:three_prime_UTR 45.0%
!! ACATCTGGTGCTGTGTTGAA+TGG - chr2_2:4480386-4480405 Msa0232160:CDS 45.0%
!! TGGTGCTGTGTTGAATGGTT+TGG - chr2_2:4480391-4480410 Msa0232160:CDS 45.0%
! GGTGCTGTGTTGAATGGTTT+GGG - chr2_2:4480392-4480411 Msa0232160:CDS 45.0%
GGATCTTCCTTCTTATCTGG+AGG - chr2_2:4480413-4480432 Msa0232160:CDS 45.0%
CCTCTTACCTCCAGATAAGA+AGG + chr2_2:4480423-4480442 None:intergenic 45.0%
CCTTCTTATCTGGAGGTAAG+AGG - chr2_2:4480420-4480439 Msa0232160:CDS 45.0%
CAGTAGTAGCTAACAAGGCT+TGG + chr2_2:4480448-4480467 None:intergenic 45.0%
ACTACTGCTATTGGAGCCAA+AGG - chr2_2:4480461-4480480 Msa0232160:CDS 45.0%
CTTCTGCACCAAAGAAGTCA+TGG - chr2_2:4480531-4480550 Msa0232160:CDS 45.0%
! TGGATCCCTGGTGTTAGATT+TGG - chr2_2:4480551-4480570 Msa0232160:CDS 45.0%
! ATCCCTGGTGTTAGATTTGG+TGG - chr2_2:4480554-4480573 Msa0232160:CDS 45.0%
!!! GACTTTGGTTTTGACCCACT+AGG - chr2_2:4480859-4480878 Msa0232160:CDS 45.0%
AGGACCCAGCATTTCTCAAA+TGG - chr2_2:4480890-4480909 Msa0232160:CDS 45.0%
CTGAGCTTATTCATGGAAGG+TGG - chr2_2:4480923-4480942 Msa0232160:intron 45.0%
TATTCATGGAAGGTGGGCAA+TGG - chr2_2:4480930-4480949 Msa0232160:intron 45.0%
!! GCAGTTCTAGGCATCTTTGT+TGG - chr2_2:4480955-4480974 Msa0232160:intron 45.0%
TCTAGGCATCTTTGTTGGTC+AGG - chr2_2:4480960-4480979 Msa0232160:intron 45.0%
GGAGAATGGAGCAATTGCAT+TGG + chr2_2:4481025-4481044 None:intergenic 45.0%
GCAATTGCTCCATTCTCCTT+TGG - chr2_2:4481027-4481046 Msa0232160:intron 45.0%
!! AGTGCCTAGAAGAGTACCAA+AGG + chr2_2:4481046-4481065 None:intergenic 45.0%
! AGGCACTCAGTTGATTCTCA+TGG - chr2_2:4481059-4481078 Msa0232160:intron 45.0%
! GGCACTCAGTTGATTCTCAT+GGG - chr2_2:4481060-4481079 Msa0232160:intron 45.0%
! GCACTCAGTTGATTCTCATG+GGG - chr2_2:4481061-4481080 Msa0232160:intron 45.0%
! TCAGTTGATTCTCATGGGGT+GGG - chr2_2:4481065-4481084 Msa0232160:intron 45.0%
! ATGGGTCGATTTCTTCAACC+CGG - chr2_2:4481101-4481120 Msa0232160:intron 45.0%
CGGATTCACAGTCAATCGAA+TGG - chr2_2:4481121-4481140 Msa0232160:intron 45.0%
TGCATTAGCAAAGTTCTCGG+CGG + chr2_2:4481166-4481185 None:intergenic 45.0%
! GTTTTCGATGGTACCAGCAA+GGG + chr2_2:4481235-4481254 None:intergenic 45.0%
CTTGCTGGTACCATCGAAAA+CGG - chr2_2:4481234-4481253 Msa0232160:CDS 45.0%
! CTCTCTAGCTTCTCTGTATC+TGG + chr2_2:4481270-4481289 None:intergenic 45.0%
TGGCTGAGATTAAGCATGCT+AGG - chr2_2:4481298-4481317 Msa0232160:CDS 45.0%
!! TTACAAGCCAAGAGCACCAA+GGG + chr2_2:4481379-4481398 None:intergenic 45.0%
!! TTTACAAGCCAAGAGCACCA+AGG + chr2_2:4481380-4481399 None:intergenic 45.0%
TGTCATGGAGTAGCACACTT+AGG + chr2_2:4481464-4481483 None:intergenic 45.0%
! TGATTTGGCTTCCAACCACG+TGG + chr2_2:4480123-4480142 None:intergenic 50.0%
GTTGGAAGCCAAATCAGCTG+AGG - chr2_2:4480127-4480146 Msa0232160:three_prime_UTR 50.0%
GAAGCCAAATCAGCTGAGGA+TGG - chr2_2:4480131-4480150 Msa0232160:three_prime_UTR 50.0%
CAAATGGCAGCTGCAACATC+TGG - chr2_2:4480371-4480390 Msa0232160:exon 50.0%
ACTGCTATTGGAGCCAAAGG+TGG - chr2_2:4480464-4480483 Msa0232160:CDS 50.0%
CCAGGGATCCATGACTTCTT+TGG + chr2_2:4480542-4480561 None:intergenic 50.0%
CCAAAGAAGTCATGGATCCC+TGG - chr2_2:4480539-4480558 Msa0232160:CDS 50.0%
ACGATCCATCGAGCCATTCT+GGG + chr2_2:4480592-4480611 None:intergenic 50.0%
TACGATCCATCGAGCCATTC+TGG + chr2_2:4480593-4480612 None:intergenic 50.0%
GGGTCAAAACCAAAGTCACC+TGG + chr2_2:4480856-4480875 None:intergenic 50.0%
GCATCTTTGTTGGTCAGGCA+TGG - chr2_2:4480965-4480984 Msa0232160:intron 50.0%
TTTGTTGGTCAGGCATGGAG+TGG - chr2_2:4480970-4480989 Msa0232160:intron 50.0%
GAGTGGAGTTCCATGGTTTG+AGG - chr2_2:4480987-4481006 Msa0232160:intron 50.0%
! CTCAGTTGATTCTCATGGGG+TGG - chr2_2:4481064-4481083 Msa0232160:intron 50.0%
GTGGGTAGAGAGCAAGAGAT+GGG - chr2_2:4481083-4481102 Msa0232160:intron 50.0%
! TTCTCGGCGGTTTTTGACCA+TGG + chr2_2:4481153-4481172 None:intergenic 50.0%
GCTAATGCAACCGGAGAACA+AGG - chr2_2:4481177-4481196 Msa0232160:CDS 50.0%
! GGTCGAAGAATTTTCCCCCT+GGG + chr2_2:4481206-4481225 None:intergenic 50.0%
TGGTACCAGCAAGGGACAAT+GGG + chr2_2:4481227-4481246 None:intergenic 50.0%
ATGGTACCAGCAAGGGACAA+TGG + chr2_2:4481228-4481247 None:intergenic 50.0%
! CGTTTTCGATGGTACCAGCA+AGG + chr2_2:4481236-4481255 None:intergenic 50.0%
!! GCATGCTAGGCTTGCTATGT+TGG - chr2_2:4481311-4481330 Msa0232160:CDS 50.0%
!! TACAAGCCAAGAGCACCAAG+GGG + chr2_2:4481378-4481397 None:intergenic 50.0%
! TGATTTGGCTTCCAACCACG+TGG + chr2_2:4480123-4480142 None:intergenic 50.0%
GTTGGAAGCCAAATCAGCTG+AGG - chr2_2:4480127-4480146 Msa0232160:three_prime_UTR 50.0%
GAAGCCAAATCAGCTGAGGA+TGG - chr2_2:4480131-4480150 Msa0232160:three_prime_UTR 50.0%
CAAATGGCAGCTGCAACATC+TGG - chr2_2:4480371-4480390 Msa0232160:exon 50.0%
ACTGCTATTGGAGCCAAAGG+TGG - chr2_2:4480464-4480483 Msa0232160:CDS 50.0%
CCAGGGATCCATGACTTCTT+TGG + chr2_2:4480542-4480561 None:intergenic 50.0%
CCAAAGAAGTCATGGATCCC+TGG - chr2_2:4480539-4480558 Msa0232160:CDS 50.0%
ACGATCCATCGAGCCATTCT+GGG + chr2_2:4480592-4480611 None:intergenic 50.0%
TACGATCCATCGAGCCATTC+TGG + chr2_2:4480593-4480612 None:intergenic 50.0%
GGGTCAAAACCAAAGTCACC+TGG + chr2_2:4480856-4480875 None:intergenic 50.0%
GCATCTTTGTTGGTCAGGCA+TGG - chr2_2:4480965-4480984 Msa0232160:intron 50.0%
TTTGTTGGTCAGGCATGGAG+TGG - chr2_2:4480970-4480989 Msa0232160:intron 50.0%
GAGTGGAGTTCCATGGTTTG+AGG - chr2_2:4480987-4481006 Msa0232160:intron 50.0%
! CTCAGTTGATTCTCATGGGG+TGG - chr2_2:4481064-4481083 Msa0232160:intron 50.0%
GTGGGTAGAGAGCAAGAGAT+GGG - chr2_2:4481083-4481102 Msa0232160:intron 50.0%
! TTCTCGGCGGTTTTTGACCA+TGG + chr2_2:4481153-4481172 None:intergenic 50.0%
GCTAATGCAACCGGAGAACA+AGG - chr2_2:4481177-4481196 Msa0232160:CDS 50.0%
! GGTCGAAGAATTTTCCCCCT+GGG + chr2_2:4481206-4481225 None:intergenic 50.0%
TGGTACCAGCAAGGGACAAT+GGG + chr2_2:4481227-4481246 None:intergenic 50.0%
ATGGTACCAGCAAGGGACAA+TGG + chr2_2:4481228-4481247 None:intergenic 50.0%
! CGTTTTCGATGGTACCAGCA+AGG + chr2_2:4481236-4481255 None:intergenic 50.0%
!! GCATGCTAGGCTTGCTATGT+TGG - chr2_2:4481311-4481330 Msa0232160:CDS 50.0%
!! TACAAGCCAAGAGCACCAAG+GGG + chr2_2:4481378-4481397 None:intergenic 50.0%
GAGCACAGTGGAGTGGAACA+TGG - chr2_2:4480094-4480113 Msa0232160:three_prime_UTR 55.0%
AGTGGAACATGGTGTCCACG+TGG - chr2_2:4480105-4480124 Msa0232160:three_prime_UTR 55.0%
GAACATGGTGTCCACGTGGT+TGG - chr2_2:4480109-4480128 Msa0232160:three_prime_UTR 55.0%
GAAACCTCGTCGACCCAGAA+TGG - chr2_2:4480576-4480595 Msa0232160:CDS 55.0%
!! GGTTTTGACCCACTAGGCCT+TGG - chr2_2:4480865-4480884 Msa0232160:CDS 55.0%
GAAATGCTGGGTCCTTGCCA+AGG + chr2_2:4480885-4480904 None:intergenic 55.0%
TGGGCAATGGCTGCAGTTCT+AGG - chr2_2:4480943-4480962 Msa0232160:intron 55.0%
AGGCATGGAGTGGAGTTCCA+TGG - chr2_2:4480980-4480999 Msa0232160:intron 55.0%
! GGAGTTCCATGGTTTGAGGC+TGG - chr2_2:4480991-4481010 Msa0232160:intron 55.0%
TCAGCTCCAGCCTCAAACCA+TGG + chr2_2:4481000-4481019 None:intergenic 55.0%
GGTGGGTAGAGAGCAAGAGA+TGG - chr2_2:4481082-4481101 Msa0232160:intron 55.0%
CAATCGAATGGGCCACTCCA+TGG - chr2_2:4481133-4481152 Msa0232160:intron 55.0%
! GGCGGTTTTTGACCATGGAG+TGG + chr2_2:4481148-4481167 None:intergenic 55.0%
! GGGTCGAAGAATTTTCCCCC+TGG + chr2_2:4481207-4481226 None:intergenic 55.0%
TTCGACCCATTGTCCCTTGC+TGG - chr2_2:4481219-4481238 Msa0232160:CDS 55.0%
!! AAGACTCCCCTTGGTGCTCT+TGG - chr2_2:4481369-4481388 Msa0232160:CDS 55.0%
GAGCACAGTGGAGTGGAACA+TGG - chr2_2:4480094-4480113 Msa0232160:three_prime_UTR 55.0%
AGTGGAACATGGTGTCCACG+TGG - chr2_2:4480105-4480124 Msa0232160:three_prime_UTR 55.0%
GAACATGGTGTCCACGTGGT+TGG - chr2_2:4480109-4480128 Msa0232160:three_prime_UTR 55.0%
GAAACCTCGTCGACCCAGAA+TGG - chr2_2:4480576-4480595 Msa0232160:CDS 55.0%
!! GGTTTTGACCCACTAGGCCT+TGG - chr2_2:4480865-4480884 Msa0232160:CDS 55.0%
GAAATGCTGGGTCCTTGCCA+AGG + chr2_2:4480885-4480904 None:intergenic 55.0%
TGGGCAATGGCTGCAGTTCT+AGG - chr2_2:4480943-4480962 Msa0232160:intron 55.0%
AGGCATGGAGTGGAGTTCCA+TGG - chr2_2:4480980-4480999 Msa0232160:intron 55.0%
! GGAGTTCCATGGTTTGAGGC+TGG - chr2_2:4480991-4481010 Msa0232160:intron 55.0%
TCAGCTCCAGCCTCAAACCA+TGG + chr2_2:4481000-4481019 None:intergenic 55.0%
GGTGGGTAGAGAGCAAGAGA+TGG - chr2_2:4481082-4481101 Msa0232160:intron 55.0%
CAATCGAATGGGCCACTCCA+TGG - chr2_2:4481133-4481152 Msa0232160:intron 55.0%
! GGCGGTTTTTGACCATGGAG+TGG + chr2_2:4481148-4481167 None:intergenic 55.0%
! GGGTCGAAGAATTTTCCCCC+TGG + chr2_2:4481207-4481226 None:intergenic 55.0%
TTCGACCCATTGTCCCTTGC+TGG - chr2_2:4481219-4481238 Msa0232160:CDS 55.0%
!! AAGACTCCCCTTGGTGCTCT+TGG - chr2_2:4481369-4481388 Msa0232160:CDS 55.0%
ACCAGCTGCAGCACCACCTT+TGG + chr2_2:4480480-4480499 None:intergenic 60.0%
GTCGACCCAGAATGGCTCGA+TGG - chr2_2:4480584-4480603 Msa0232160:CDS 60.0%
TGACCCACTAGGCCTTGGCA+AGG - chr2_2:4480870-4480889 Msa0232160:CDS 60.0%
GGTCCTTGCCAAGGCCTAGT+GGG + chr2_2:4480876-4480895 None:intergenic 60.0%
ACCGGAGAACAAGGCTACCC+AGG - chr2_2:4481186-4481205 Msa0232160:CDS 60.0%
!! CCCTGGGTAGCCTTGTTCTC+CGG + chr2_2:4481190-4481209 None:intergenic 60.0%
CCGGAGAACAAGGCTACCCA+GGG - chr2_2:4481187-4481206 Msa0232160:CDS 60.0%
CGGAGAACAAGGCTACCCAG+GGG - chr2_2:4481188-4481207 Msa0232160:CDS 60.0%
GGAGAACAAGGCTACCCAGG+GGG - chr2_2:4481189-4481208 Msa0232160:CDS 60.0%
GGACAAGGGAAGACTCCCCT+TGG - chr2_2:4481360-4481379 Msa0232160:CDS 60.0%
ACCAGCTGCAGCACCACCTT+TGG + chr2_2:4480480-4480499 None:intergenic 60.0%
GTCGACCCAGAATGGCTCGA+TGG - chr2_2:4480584-4480603 Msa0232160:CDS 60.0%
TGACCCACTAGGCCTTGGCA+AGG - chr2_2:4480870-4480889 Msa0232160:CDS 60.0%
GGTCCTTGCCAAGGCCTAGT+GGG + chr2_2:4480876-4480895 None:intergenic 60.0%
ACCGGAGAACAAGGCTACCC+AGG - chr2_2:4481186-4481205 Msa0232160:CDS 60.0%
!! CCCTGGGTAGCCTTGTTCTC+CGG + chr2_2:4481190-4481209 None:intergenic 60.0%
CCGGAGAACAAGGCTACCCA+GGG - chr2_2:4481187-4481206 Msa0232160:CDS 60.0%
CGGAGAACAAGGCTACCCAG+GGG - chr2_2:4481188-4481207 Msa0232160:CDS 60.0%
GGAGAACAAGGCTACCCAGG+GGG - chr2_2:4481189-4481208 Msa0232160:CDS 60.0%
GGACAAGGGAAGACTCCCCT+TGG - chr2_2:4481360-4481379 Msa0232160:CDS 60.0%
!! GCCAAAGGTGGTGCTGCAGC+TGG - chr2_2:4480476-4480495 Msa0232160:CDS 65.0%
CGAGCCATTCTGGGTCGACG+AGG + chr2_2:4480583-4480602 None:intergenic 65.0%
GGGTCCTTGCCAAGGCCTAG+TGG + chr2_2:4480877-4480896 None:intergenic 65.0%
!! GCCAAAGGTGGTGCTGCAGC+TGG - chr2_2:4480476-4480495 Msa0232160:CDS 65.0%
CGAGCCATTCTGGGTCGACG+AGG + chr2_2:4480583-4480602 None:intergenic 65.0%
GGGTCCTTGCCAAGGCCTAG+TGG + chr2_2:4480877-4480896 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 4480070 4481704 4480070 ID=Msa0232160;Name=Msa0232160
chr2_2 mRNA 4480070 4481704 4480070 ID=Msa0232160-mRNA-1;Parent=Msa0232160;Name=Msa0232160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=304|1|1|1|1|1|2|306|261
chr2_2 exon 4480070 4480925 4480070 ID=Msa0232160-mRNA-1:exon:1823;Parent=Msa0232160-mRNA-1
chr2_2 exon 4481165 4481704 4481165 ID=Msa0232160-mRNA-1:exon:1822;Parent=Msa0232160-mRNA-1
chr2_2 five_prime_UTR 4481401 4481704 4481401 ID=Msa0232160-mRNA-1:five_prime_utr;Parent=Msa0232160-mRNA-1
chr2_2 CDS 4481165 4481400 4481165 ID=Msa0232160-mRNA-1:cds;Parent=Msa0232160-mRNA-1
chr2_2 CDS 4480376 4480925 4480376 ID=Msa0232160-mRNA-1:cds;Parent=Msa0232160-mRNA-1
chr2_2 three_prime_UTR 4480070 4480375 4480070 ID=Msa0232160-mRNA-1:three_prime_utr;Parent=Msa0232160-mRNA-1
Gene Sequence

>Msa0232160

ATGGCAGCTGCAACATCTGGTGCTGTGTTGAATGGTTTGGGATCTTCCTTCTTATCTGGAGGTAAGAGGAGCCAAGCCTTGTTAGCTACTACTGCTATTGGAGCCAAAGGTGGTGCTGCAGCTGGTAGTCCTAAAAGACTTATTGTTGCTGCTGCTGCTTCTGCACCAAAGAAGTCATGGATCCCTGGTGTTAGATTTGGTGGAAACCTCGTCGACCCAGAATGGCTCGATGGATCATTACCAGGTGACTTTGGTTTTGACCCACTAGGCCTTGGCAAGGACCCAGCATTTCTCAAATGGTACAGAGAAGCTGAGCTTATTCATGGAAGGTGGGCAATGGCTGCAGTTCTAGGCATCTTTGTTGGTCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCATTCTCCTTTGGTACTCTTCTAGGCACTCAGTTGATTCTCATGGGGTGGGTAGAGAGCAAGAGATGGGTCGATTTCTTCAACCCGGATTCACAGTCAATCGAATGGGCCACTCCATGGTCAAAAACCGCCGAGAACTTTGCTAATGCAACCGGAGAACAAGGCTACCCAGGGGGAAAATTCTTCGACCCATTGTCCCTTGCTGGTACCATCGAAAACGGAGTTTACATTCCAGATACAGAGAAGCTAGAGAGATTGAAACTGGCTGAGATTAAGCATGCTAGGCTTGCTATGTTGGCTATGCTGATTTTCTACTTTGAAGCTGGACAAGGGAAGACTCCCCTTGGTGCTCTTGGCTTGTAA

Protein sequence

>Msa0232160

MAAATSGAVLNGLGSSFLSGGKRSQALLATTAIGAKGGAAAGSPKRLIVAAAASAPKKSWIPGVRFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSIEWATPWSKTAENFANATGEQGYPGGKFFDPLSLAGTIENGVYIPDTEKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL*