Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181200 | XP_013444170.1 | 74.597 | 248 | 30 | 3 | 3 | 241 | 1 | 224 | 3.69e-116 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa1181200 | 0.812220 | 4.731454e-51 | -8.615850e-47 |
| Msa0017510 | Msa1181200 | 0.805133 | 1.546400e-49 | -8.615850e-47 |
| Msa0031340 | Msa1181200 | 0.822431 | 2.377853e-53 | -8.615850e-47 |
| Msa0074700 | Msa1181200 | 0.821805 | 3.320993e-53 | -8.615850e-47 |
| Msa0083280 | Msa1181200 | 0.811919 | 5.502683e-51 | -8.615850e-47 |
| Msa0114060 | Msa1181200 | 0.812794 | 3.543861e-51 | -8.615850e-47 |
| Msa0616160 | Msa1181200 | 0.807676 | 4.499870e-50 | -8.615850e-47 |
| Msa0663390 | Msa1181200 | 0.803629 | 3.182528e-49 | -8.615850e-47 |
| Msa0690860 | Msa1181200 | 0.805423 | 1.344343e-49 | -8.615850e-47 |
| Msa0709400 | Msa1181200 | 0.813032 | 3.143130e-51 | -8.615850e-47 |
| Msa0806800 | Msa1181200 | 0.805037 | 1.619847e-49 | -8.615850e-47 |
| Msa0820770 | Msa1181200 | 0.804302 | 2.306293e-49 | -8.615850e-47 |
| Msa0832340 | Msa1181200 | 0.810207 | 1.293014e-50 | -8.615850e-47 |
| Msa0157290 | Msa1181200 | 0.804298 | 2.309764e-49 | -8.615850e-47 |
| Msa0211150 | Msa1181200 | 0.802237 | 6.170268e-49 | -8.615850e-47 |
| Msa0220580 | Msa1181200 | 0.803915 | 2.775567e-49 | -8.615850e-47 |
| Msa0379640 | Msa1181200 | 0.804971 | 1.672264e-49 | -8.615850e-47 |
| Msa0467060 | Msa1181200 | 0.813720 | 2.219082e-51 | -8.615850e-47 |
| Msa0481530 | Msa1181200 | 0.800343 | 1.506510e-48 | -8.615850e-47 |
| Msa1014540 | Msa1181200 | 0.803035 | 4.224485e-49 | -8.615850e-47 |
| Msa0243100 | Msa1181200 | 0.804290 | 2.319050e-49 | -8.615850e-47 |
| Msa0345970 | Msa1181200 | 0.810501 | 1.117279e-50 | -8.615850e-47 |
| Msa0357340 | Msa1181200 | 0.806430 | 8.256124e-50 | -8.615850e-47 |
| Msa1124960 | Msa1181200 | 0.806166 | 9.385621e-50 | -8.615850e-47 |
| Msa1181200 | Msa1190930 | 0.803953 | 2.725016e-49 | -8.615850e-47 |
| Msa1181200 | Msa1204530 | 0.806334 | 8.651640e-50 | -8.615850e-47 |
| Msa1181200 | Msa1244600 | 0.800751 | 1.244468e-48 | -8.615850e-47 |
| Msa1181200 | Msa1244610 | 0.820489 | 6.677668e-53 | -8.615850e-47 |
| Msa1181200 | Msa1253020 | 0.822458 | 2.343514e-53 | -8.615850e-47 |
| Msa1181200 | Msa1277660 | 0.801027 | 1.092716e-48 | -8.615850e-47 |
| Msa1181200 | Msa1284680 | 0.822199 | 2.691939e-53 | -8.615850e-47 |
| Msa1181200 | Msa1293510 | 0.809586 | 1.758252e-50 | -8.615850e-47 |
| Msa1181200 | Msa1331000 | 0.801556 | 8.517900e-49 | -8.615850e-47 |
| Msa1181200 | Msa1370070 | -0.807502 | 4.899959e-50 | -8.615850e-47 |
| Msa1181200 | Msa1386780 | 0.801862 | 7.369470e-49 | -8.615850e-47 |
| Msa1181200 | Msa1451550 | 0.808291 | 3.328149e-50 | -8.615850e-47 |
| Msa1181200 | Msa1452240 | 0.813515 | 2.462153e-51 | -8.615850e-47 |
| Msa0493630 | Msa1181200 | 0.806881 | 6.632162e-50 | -8.615850e-47 |
| Msa0502100 | Msa1181200 | 0.804784 | 1.829234e-49 | -8.615850e-47 |
| Msa0880020 | Msa1181200 | 0.806226 | 9.117485e-50 | -8.615850e-47 |
| Msa0880140 | Msa1181200 | 0.807885 | 4.062318e-50 | -8.615850e-47 |
| Msa0963270 | Msa1181200 | 0.826609 | 2.469570e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181200 | MtrunA17_Chr8g0339961 | 74.597 | 248 | 30 | 3 | 3 | 241 | 1 | 224 | 3.39e-120 | 341 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181200 | AT3G07150.1 | 37.500 | 240 | 90 | 8 | 13 | 241 | 9 | 199 | 1.02e-32 | 118 |
Find 31 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCCATAGCTAAAGCTTT+TGG | 0.234290 | 8_1:+15519100 | Msa1181200:CDS |
| AAAGACATGTCAATGTTGTT+AGG | 0.283254 | 8_1:+15518977 | None:intergenic |
| CATGATGCTATTGTTGTTAC+TGG | 0.302910 | 8_1:+15519256 | Msa1181200:CDS |
| AAACAAACCAAATGTATAGA+AGG | 0.351386 | 8_1:-15520319 | None:intergenic |
| TTATTTCTTCTTCTGTTACT+TGG | 0.362087 | 8_1:+15519179 | Msa1181200:CDS |
| TCGTATAACTGCATGTAAAC+TGG | 0.378325 | 8_1:-15520421 | None:intergenic |
| CTTCTAGAAGTTTGTCTACT+GGG | 0.396802 | 8_1:+15519224 | Msa1181200:CDS |
| GTGGTAGAAGGTGAGCATTC+TGG | 0.397667 | 8_1:+15519831 | Msa1181200:CDS |
| AAGTTGAGAGAGAGCAAATC+AGG | 0.414599 | 8_1:+15519903 | Msa1181200:CDS |
| CCATTCAACCTCAACGTTGA+TGG | 0.419649 | 8_1:-15519130 | None:intergenic |
| TCTTCTAGAAGTTTGTCTAC+TGG | 0.423145 | 8_1:+15519223 | Msa1181200:CDS |
| GGGATTGGCAAAGTGGTAGA+AGG | 0.433835 | 8_1:+15519819 | Msa1181200:CDS |
| TTAAAAGGTGAGATCTTGAA+TGG | 0.439116 | 8_1:+15520157 | Msa1181200:intron |
| AAGACATGTCAATGTTGTTA+GGG | 0.451521 | 8_1:+15518978 | None:intergenic |
| TTGTCGCAGCTAATTACAAA+AGG | 0.477652 | 8_1:+15520480 | Msa1181200:CDS |
| TTCAACATTAACAACTTCGA+TGG | 0.487046 | 8_1:+15520341 | Msa1181200:CDS |
| CATTCAACCTCAACGTTGAT+GGG | 0.496209 | 8_1:-15519129 | None:intergenic |
| AAAATAAACGAGGACAAGTC+AGG | 0.496765 | 8_1:+15520235 | Msa1181200:CDS |
| CTGGCTGCGAGAAATGGTTC+CGG | 0.501033 | 8_1:-15520402 | None:intergenic |
| TGTAAACTGGCTGCGAGAAA+TGG | 0.509703 | 8_1:-15520408 | None:intergenic |
| TTAACAACTTCGATGGACTC+TGG | 0.516604 | 8_1:+15520348 | Msa1181200:CDS |
| TACTGGCAAAGTTGTCTACA+AGG | 0.521965 | 8_1:+15519273 | Msa1181200:CDS |
| GATAAAGTCGATGAGCTCTC+CGG | 0.526515 | 8_1:+15520383 | Msa1181200:CDS |
| TAACCCAAAAGCTTTAGCTA+TGG | 0.535559 | 8_1:-15519104 | None:intergenic |
| AACAAACCAAATGTATAGAA+GGG | 0.576831 | 8_1:-15520318 | None:intergenic |
| TCAAAATGGGATTGGCAAAG+TGG | 0.580663 | 8_1:+15519812 | Msa1181200:CDS |
| CAGTAACAACAATAGCATCA+TGG | 0.599261 | 8_1:-15519255 | None:intergenic |
| GGTTAGACCCATCAACGTTG+AGG | 0.608671 | 8_1:+15519122 | Msa1181200:CDS |
| ATACGAGTAATAATGTGAAG+CGG | 0.657851 | 8_1:+15520438 | Msa1181200:CDS |
| ACTGGCAAAGTTGTCTACAA+GGG | 0.685525 | 8_1:+15519274 | Msa1181200:CDS |
| GAAGCGGATAAGAGAAGACG+AGG | 0.690208 | 8_1:+15520454 | Msa1181200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAGTTTTATATTTTTTGT+TGG | + | chr8_1:15519305-15519324 | Msa1181200:intron | 15.0% |
| !!! | AAAAAATCAATTTTACAGAA+TGG | + | chr8_1:15519552-15519571 | Msa1181200:intron | 15.0% |
| !!! | TCAAGTTTTATATTTTTTGT+TGG | + | chr8_1:15519305-15519324 | Msa1181200:intron | 15.0% |
| !!! | AAAAAATCAATTTTACAGAA+TGG | + | chr8_1:15519552-15519571 | Msa1181200:intron | 15.0% |
| !! | TTACTTATTGAAAATGTTGA+AGG | + | chr8_1:15519371-15519390 | Msa1181200:intron | 20.0% |
| !!! | ATTCACAACATTTTCAAAAT+GGG | + | chr8_1:15519799-15519818 | Msa1181200:CDS | 20.0% |
| !!! | ATTTTTCAGGAATATATAAC+TGG | + | chr8_1:15519941-15519960 | Msa1181200:intron | 20.0% |
| !! | TGTTCTTTGTTCTTATTAAA+AGG | + | chr8_1:15520142-15520161 | Msa1181200:intron | 20.0% |
| !! | TTACTTATTGAAAATGTTGA+AGG | + | chr8_1:15519371-15519390 | Msa1181200:intron | 20.0% |
| !!! | ATTCACAACATTTTCAAAAT+GGG | + | chr8_1:15519799-15519818 | Msa1181200:CDS | 20.0% |
| !!! | ATTTTTCAGGAATATATAAC+TGG | + | chr8_1:15519941-15519960 | Msa1181200:intron | 20.0% |
| !! | TGTTCTTTGTTCTTATTAAA+AGG | + | chr8_1:15520142-15520161 | Msa1181200:intron | 20.0% |
| !! | TTTTTGAATTTGAGAGTGAA+GGG | - | chr8_1:15519039-15519058 | None:intergenic | 25.0% |
| !! | AATGGTTACTTTATAAGTAG+AGG | + | chr8_1:15519148-15519167 | Msa1181200:intron | 25.0% |
| !! | ATGGTTACTTTATAAGTAGA+GGG | + | chr8_1:15519149-15519168 | Msa1181200:intron | 25.0% |
| !! | TTATTTCTTCTTCTGTTACT+TGG | + | chr8_1:15519179-15519198 | Msa1181200:CDS | 25.0% |
| ! | TCAATTCTACTCATAACATT+AGG | - | chr8_1:15519425-15519444 | None:intergenic | 25.0% |
| !! | GATTCACAACATTTTCAAAA+TGG | + | chr8_1:15519798-15519817 | Msa1181200:CDS | 25.0% |
| !!! | TATGTCTTCAGTTATTTTTC+AGG | + | chr8_1:15519928-15519947 | Msa1181200:intron | 25.0% |
| ! | CAAGAAGTTAAAAATAAACG+AGG | + | chr8_1:15520225-15520244 | Msa1181200:CDS | 25.0% |
| ! | AACAAACCAAATGTATAGAA+GGG | - | chr8_1:15520321-15520340 | None:intergenic | 25.0% |
| ! | AAACAAACCAAATGTATAGA+AGG | - | chr8_1:15520322-15520341 | None:intergenic | 25.0% |
| !! | TTTTTGAATTTGAGAGTGAA+GGG | - | chr8_1:15519039-15519058 | None:intergenic | 25.0% |
| !! | AATGGTTACTTTATAAGTAG+AGG | + | chr8_1:15519148-15519167 | Msa1181200:intron | 25.0% |
| !! | ATGGTTACTTTATAAGTAGA+GGG | + | chr8_1:15519149-15519168 | Msa1181200:intron | 25.0% |
| !! | TTATTTCTTCTTCTGTTACT+TGG | + | chr8_1:15519179-15519198 | Msa1181200:CDS | 25.0% |
| ! | TCAATTCTACTCATAACATT+AGG | - | chr8_1:15519425-15519444 | None:intergenic | 25.0% |
| !! | GATTCACAACATTTTCAAAA+TGG | + | chr8_1:15519798-15519817 | Msa1181200:CDS | 25.0% |
| !!! | TATGTCTTCAGTTATTTTTC+AGG | + | chr8_1:15519928-15519947 | Msa1181200:intron | 25.0% |
| ! | CAAGAAGTTAAAAATAAACG+AGG | + | chr8_1:15520225-15520244 | Msa1181200:CDS | 25.0% |
| ! | AACAAACCAAATGTATAGAA+GGG | - | chr8_1:15520321-15520340 | None:intergenic | 25.0% |
| ! | AAACAAACCAAATGTATAGA+AGG | - | chr8_1:15520322-15520341 | None:intergenic | 25.0% |
| ! | CTTTTTGAATTTGAGAGTGA+AGG | - | chr8_1:15519040-15519059 | None:intergenic | 30.0% |
| ! | GATGATGAAAAAGTTGATCT+TGG | + | chr8_1:15519079-15519098 | Msa1181200:CDS | 30.0% |
| ! | TGGTTACTTTATAAGTAGAG+GGG | + | chr8_1:15519150-15519169 | Msa1181200:intron | 30.0% |
| ! | CAACATTTTCAAAATGGGAT+TGG | + | chr8_1:15519804-15519823 | Msa1181200:CDS | 30.0% |
| TGTAATCATCTGTTGGAATT+CGG | - | chr8_1:15520020-15520039 | None:intergenic | 30.0% | |
| ! | TGTTACTTGTAATCATCTGT+TGG | - | chr8_1:15520027-15520046 | None:intergenic | 30.0% |
| TTAAAAGGTGAGATCTTGAA+TGG | + | chr8_1:15520157-15520176 | Msa1181200:intron | 30.0% | |
| GCAGGATATAGAAAAATAGA+GGG | - | chr8_1:15520278-15520297 | None:intergenic | 30.0% | |
| TGCAGGATATAGAAAAATAG+AGG | - | chr8_1:15520279-15520298 | None:intergenic | 30.0% | |
| GAAGGGTAAAACTAAGAAAT+AGG | - | chr8_1:15520304-15520323 | None:intergenic | 30.0% | |
| ! | GTTTTACCCTTCTATACATT+TGG | + | chr8_1:15520312-15520331 | Msa1181200:intron | 30.0% |
| TTCAACATTAACAACTTCGA+TGG | + | chr8_1:15520341-15520360 | Msa1181200:CDS | 30.0% | |
| ATACGAGTAATAATGTGAAG+CGG | + | chr8_1:15520438-15520457 | Msa1181200:CDS | 30.0% | |
| ! | CTTTTTGAATTTGAGAGTGA+AGG | - | chr8_1:15519040-15519059 | None:intergenic | 30.0% |
| ! | GATGATGAAAAAGTTGATCT+TGG | + | chr8_1:15519079-15519098 | Msa1181200:CDS | 30.0% |
| ! | TGGTTACTTTATAAGTAGAG+GGG | + | chr8_1:15519150-15519169 | Msa1181200:intron | 30.0% |
| ! | CAACATTTTCAAAATGGGAT+TGG | + | chr8_1:15519804-15519823 | Msa1181200:CDS | 30.0% |
| TGTAATCATCTGTTGGAATT+CGG | - | chr8_1:15520020-15520039 | None:intergenic | 30.0% | |
| ! | TGTTACTTGTAATCATCTGT+TGG | - | chr8_1:15520027-15520046 | None:intergenic | 30.0% |
| TTAAAAGGTGAGATCTTGAA+TGG | + | chr8_1:15520157-15520176 | Msa1181200:intron | 30.0% | |
| GCAGGATATAGAAAAATAGA+GGG | - | chr8_1:15520278-15520297 | None:intergenic | 30.0% | |
| TGCAGGATATAGAAAAATAG+AGG | - | chr8_1:15520279-15520298 | None:intergenic | 30.0% | |
| GAAGGGTAAAACTAAGAAAT+AGG | - | chr8_1:15520304-15520323 | None:intergenic | 30.0% | |
| ! | GTTTTACCCTTCTATACATT+TGG | + | chr8_1:15520312-15520331 | Msa1181200:intron | 30.0% |
| TTCAACATTAACAACTTCGA+TGG | + | chr8_1:15520341-15520360 | Msa1181200:CDS | 30.0% | |
| ATACGAGTAATAATGTGAAG+CGG | + | chr8_1:15520438-15520457 | Msa1181200:CDS | 30.0% | |
| ! | GTTCCATAGCTAAAGCTTTT+GGG | + | chr8_1:15519101-15519120 | Msa1181200:CDS | 35.0% |
| ! | TAACCCAAAAGCTTTAGCTA+TGG | - | chr8_1:15519107-15519126 | None:intergenic | 35.0% |
| ! | TCTTCTAGAAGTTTGTCTAC+TGG | + | chr8_1:15519223-15519242 | Msa1181200:CDS | 35.0% |
| ! | CTTCTAGAAGTTTGTCTACT+GGG | + | chr8_1:15519224-15519243 | Msa1181200:CDS | 35.0% |
| CAGTAACAACAATAGCATCA+TGG | - | chr8_1:15519258-15519277 | None:intergenic | 35.0% | |
| ! | CATGATGCTATTGTTGTTAC+TGG | + | chr8_1:15519256-15519275 | Msa1181200:CDS | 35.0% |
| ! | GTTGAAAATTTTGTAGCAGC+TGG | + | chr8_1:15519339-15519358 | Msa1181200:intron | 35.0% |
| AGACATCTAGAAATGACCAA+AGG | - | chr8_1:15519629-15519648 | None:intergenic | 35.0% | |
| AGTACAACTCAATCTAGGTA+AGG | - | chr8_1:15519763-15519782 | None:intergenic | 35.0% | |
| GCATAAGTACAACTCAATCT+AGG | - | chr8_1:15519768-15519787 | None:intergenic | 35.0% | |
| ! | AGATTGAGTTGTACTTATGC+AGG | + | chr8_1:15519768-15519787 | Msa1181200:intron | 35.0% |
| !!! | AATGTCCCCTTTTAGAATAG+TGG | + | chr8_1:15519974-15519993 | Msa1181200:intron | 35.0% |
| ! | ACGTTGCCACTATTCTAAAA+GGG | - | chr8_1:15519983-15520002 | None:intergenic | 35.0% |
| TACGTTGCCACTATTCTAAA+AGG | - | chr8_1:15519984-15520003 | None:intergenic | 35.0% | |
| ! | GCGATTTTCAGTCAGTATTT+CGG | + | chr8_1:15520079-15520098 | Msa1181200:intron | 35.0% |
| AAAATAAACGAGGACAAGTC+AGG | + | chr8_1:15520235-15520254 | Msa1181200:CDS | 35.0% | |
| ! | AAACTAAGAAATAGGAGTGC+AGG | - | chr8_1:15520296-15520315 | None:intergenic | 35.0% |
| TCGTATAACTGCATGTAAAC+TGG | - | chr8_1:15520424-15520443 | None:intergenic | 35.0% | |
| TTGTCGCAGCTAATTACAAA+AGG | + | chr8_1:15520480-15520499 | Msa1181200:CDS | 35.0% | |
| ! | GTTCCATAGCTAAAGCTTTT+GGG | + | chr8_1:15519101-15519120 | Msa1181200:CDS | 35.0% |
| ! | TAACCCAAAAGCTTTAGCTA+TGG | - | chr8_1:15519107-15519126 | None:intergenic | 35.0% |
| ! | TCTTCTAGAAGTTTGTCTAC+TGG | + | chr8_1:15519223-15519242 | Msa1181200:CDS | 35.0% |
| ! | CTTCTAGAAGTTTGTCTACT+GGG | + | chr8_1:15519224-15519243 | Msa1181200:CDS | 35.0% |
| CAGTAACAACAATAGCATCA+TGG | - | chr8_1:15519258-15519277 | None:intergenic | 35.0% | |
| ! | CATGATGCTATTGTTGTTAC+TGG | + | chr8_1:15519256-15519275 | Msa1181200:CDS | 35.0% |
| ! | GTTGAAAATTTTGTAGCAGC+TGG | + | chr8_1:15519339-15519358 | Msa1181200:intron | 35.0% |
| AGACATCTAGAAATGACCAA+AGG | - | chr8_1:15519629-15519648 | None:intergenic | 35.0% | |
| AGTACAACTCAATCTAGGTA+AGG | - | chr8_1:15519763-15519782 | None:intergenic | 35.0% | |
| GCATAAGTACAACTCAATCT+AGG | - | chr8_1:15519768-15519787 | None:intergenic | 35.0% | |
| ! | AGATTGAGTTGTACTTATGC+AGG | + | chr8_1:15519768-15519787 | Msa1181200:intron | 35.0% |
| !!! | AATGTCCCCTTTTAGAATAG+TGG | + | chr8_1:15519974-15519993 | Msa1181200:intron | 35.0% |
| ! | ACGTTGCCACTATTCTAAAA+GGG | - | chr8_1:15519983-15520002 | None:intergenic | 35.0% |
| TACGTTGCCACTATTCTAAA+AGG | - | chr8_1:15519984-15520003 | None:intergenic | 35.0% | |
| ! | GCGATTTTCAGTCAGTATTT+CGG | + | chr8_1:15520079-15520098 | Msa1181200:intron | 35.0% |
| AAAATAAACGAGGACAAGTC+AGG | + | chr8_1:15520235-15520254 | Msa1181200:CDS | 35.0% | |
| ! | AAACTAAGAAATAGGAGTGC+AGG | - | chr8_1:15520296-15520315 | None:intergenic | 35.0% |
| TCGTATAACTGCATGTAAAC+TGG | - | chr8_1:15520424-15520443 | None:intergenic | 35.0% | |
| TTGTCGCAGCTAATTACAAA+AGG | + | chr8_1:15520480-15520499 | Msa1181200:CDS | 35.0% | |
| ! | GGTTCCATAGCTAAAGCTTT+TGG | + | chr8_1:15519100-15519119 | Msa1181200:CDS | 40.0% |
| CATTCAACCTCAACGTTGAT+GGG | - | chr8_1:15519132-15519151 | None:intergenic | 40.0% | |
| TACTGGCAAAGTTGTCTACA+AGG | + | chr8_1:15519273-15519292 | Msa1181200:CDS | 40.0% | |
| ACTGGCAAAGTTGTCTACAA+GGG | + | chr8_1:15519274-15519293 | Msa1181200:CDS | 40.0% | |
| AGGTGTGTGTTTGTGTATAG+AGG | + | chr8_1:15519391-15519410 | Msa1181200:intron | 40.0% | |
| GGTGTGTGTTTGTGTATAGA+GGG | + | chr8_1:15519392-15519411 | Msa1181200:intron | 40.0% | |
| TGTGTTTGTGTATAGAGGGT+AGG | + | chr8_1:15519396-15519415 | Msa1181200:intron | 40.0% | |
| GTGTTTGTGTATAGAGGGTA+GGG | + | chr8_1:15519397-15519416 | Msa1181200:intron | 40.0% | |
| !!! | TAACCGTGTGTTTGGTTTTG+CGG | - | chr8_1:15519602-15519621 | None:intergenic | 40.0% |
| ATAATTCACGATCACCACCA+AGG | + | chr8_1:15519726-15519745 | Msa1181200:intron | 40.0% | |
| GTAAGGAAGTTCTATCACCT+TGG | - | chr8_1:15519746-15519765 | None:intergenic | 40.0% | |
| ! | TTGAGTTGTACTTATGCAGG+AGG | + | chr8_1:15519771-15519790 | Msa1181200:intron | 40.0% |
| ! | TCAAAATGGGATTGGCAAAG+TGG | + | chr8_1:15519812-15519831 | Msa1181200:CDS | 40.0% |
| AAGTTGAGAGAGAGCAAATC+AGG | + | chr8_1:15519903-15519922 | Msa1181200:CDS | 40.0% | |
| ! | CGTTGCCACTATTCTAAAAG+GGG | - | chr8_1:15519982-15520001 | None:intergenic | 40.0% |
| ! | TTAACAACTTCGATGGACTC+TGG | + | chr8_1:15520348-15520367 | Msa1181200:CDS | 40.0% |
| ! | GGTTCCATAGCTAAAGCTTT+TGG | + | chr8_1:15519100-15519119 | Msa1181200:CDS | 40.0% |
| CATTCAACCTCAACGTTGAT+GGG | - | chr8_1:15519132-15519151 | None:intergenic | 40.0% | |
| TACTGGCAAAGTTGTCTACA+AGG | + | chr8_1:15519273-15519292 | Msa1181200:CDS | 40.0% | |
| ACTGGCAAAGTTGTCTACAA+GGG | + | chr8_1:15519274-15519293 | Msa1181200:CDS | 40.0% | |
| AGGTGTGTGTTTGTGTATAG+AGG | + | chr8_1:15519391-15519410 | Msa1181200:intron | 40.0% | |
| GGTGTGTGTTTGTGTATAGA+GGG | + | chr8_1:15519392-15519411 | Msa1181200:intron | 40.0% | |
| TGTGTTTGTGTATAGAGGGT+AGG | + | chr8_1:15519396-15519415 | Msa1181200:intron | 40.0% | |
| GTGTTTGTGTATAGAGGGTA+GGG | + | chr8_1:15519397-15519416 | Msa1181200:intron | 40.0% | |
| !!! | TAACCGTGTGTTTGGTTTTG+CGG | - | chr8_1:15519602-15519621 | None:intergenic | 40.0% |
| ATAATTCACGATCACCACCA+AGG | + | chr8_1:15519726-15519745 | Msa1181200:intron | 40.0% | |
| GTAAGGAAGTTCTATCACCT+TGG | - | chr8_1:15519746-15519765 | None:intergenic | 40.0% | |
| ! | TTGAGTTGTACTTATGCAGG+AGG | + | chr8_1:15519771-15519790 | Msa1181200:intron | 40.0% |
| ! | TCAAAATGGGATTGGCAAAG+TGG | + | chr8_1:15519812-15519831 | Msa1181200:CDS | 40.0% |
| AAGTTGAGAGAGAGCAAATC+AGG | + | chr8_1:15519903-15519922 | Msa1181200:CDS | 40.0% | |
| ! | CGTTGCCACTATTCTAAAAG+GGG | - | chr8_1:15519982-15520001 | None:intergenic | 40.0% |
| ! | TTAACAACTTCGATGGACTC+TGG | + | chr8_1:15520348-15520367 | Msa1181200:CDS | 40.0% |
| CCATTCAACCTCAACGTTGA+TGG | - | chr8_1:15519133-15519152 | None:intergenic | 45.0% | |
| CCATCAACGTTGAGGTTGAA+TGG | + | chr8_1:15519130-15519149 | Msa1181200:intron | 45.0% | |
| TCACCGCAAAACCAAACACA+CGG | + | chr8_1:15519596-15519615 | Msa1181200:intron | 45.0% | |
| AAGGAAGCTAACCGTGTGTT+TGG | - | chr8_1:15519610-15519629 | None:intergenic | 45.0% | |
| !! | AACACACGGTTAGCTTCCTT+TGG | + | chr8_1:15519610-15519629 | Msa1181200:intron | 45.0% |
| GTGTGCTTAGAGTCTCACAT+TGG | + | chr8_1:15519686-15519705 | Msa1181200:intron | 45.0% | |
| AGGAAGTTCTATCACCTTGG+TGG | - | chr8_1:15519743-15519762 | None:intergenic | 45.0% | |
| CAGTATTTCGGTACGCTTCT+AGG | + | chr8_1:15520091-15520110 | Msa1181200:intron | 45.0% | |
| GATAAAGTCGATGAGCTCTC+CGG | + | chr8_1:15520383-15520402 | Msa1181200:CDS | 45.0% | |
| TGTAAACTGGCTGCGAGAAA+TGG | - | chr8_1:15520411-15520430 | None:intergenic | 45.0% | |
| CCATTCAACCTCAACGTTGA+TGG | - | chr8_1:15519133-15519152 | None:intergenic | 45.0% | |
| CCATCAACGTTGAGGTTGAA+TGG | + | chr8_1:15519130-15519149 | Msa1181200:intron | 45.0% | |
| TCACCGCAAAACCAAACACA+CGG | + | chr8_1:15519596-15519615 | Msa1181200:intron | 45.0% | |
| AAGGAAGCTAACCGTGTGTT+TGG | - | chr8_1:15519610-15519629 | None:intergenic | 45.0% | |
| !! | AACACACGGTTAGCTTCCTT+TGG | + | chr8_1:15519610-15519629 | Msa1181200:intron | 45.0% |
| GTGTGCTTAGAGTCTCACAT+TGG | + | chr8_1:15519686-15519705 | Msa1181200:intron | 45.0% | |
| AGGAAGTTCTATCACCTTGG+TGG | - | chr8_1:15519743-15519762 | None:intergenic | 45.0% | |
| CAGTATTTCGGTACGCTTCT+AGG | + | chr8_1:15520091-15520110 | Msa1181200:intron | 45.0% | |
| GATAAAGTCGATGAGCTCTC+CGG | + | chr8_1:15520383-15520402 | Msa1181200:CDS | 45.0% | |
| TGTAAACTGGCTGCGAGAAA+TGG | - | chr8_1:15520411-15520430 | None:intergenic | 45.0% | |
| GGTTAGACCCATCAACGTTG+AGG | + | chr8_1:15519122-15519141 | Msa1181200:CDS | 50.0% | |
| TCTCACATTGGATGCTGACG+TGG | + | chr8_1:15519698-15519717 | Msa1181200:intron | 50.0% | |
| CATTGGATGCTGACGTGGAA+CGG | + | chr8_1:15519703-15519722 | Msa1181200:intron | 50.0% | |
| ! | GGGATTGGCAAAGTGGTAGA+AGG | + | chr8_1:15519819-15519838 | Msa1181200:CDS | 50.0% |
| GTGGTAGAAGGTGAGCATTC+TGG | + | chr8_1:15519831-15519850 | Msa1181200:CDS | 50.0% | |
| GAAGCGGATAAGAGAAGACG+AGG | + | chr8_1:15520454-15520473 | Msa1181200:CDS | 50.0% | |
| GGTTAGACCCATCAACGTTG+AGG | + | chr8_1:15519122-15519141 | Msa1181200:CDS | 50.0% | |
| TCTCACATTGGATGCTGACG+TGG | + | chr8_1:15519698-15519717 | Msa1181200:intron | 50.0% | |
| CATTGGATGCTGACGTGGAA+CGG | + | chr8_1:15519703-15519722 | Msa1181200:intron | 50.0% | |
| ! | GGGATTGGCAAAGTGGTAGA+AGG | + | chr8_1:15519819-15519838 | Msa1181200:CDS | 50.0% |
| GTGGTAGAAGGTGAGCATTC+TGG | + | chr8_1:15519831-15519850 | Msa1181200:CDS | 50.0% | |
| GAAGCGGATAAGAGAAGACG+AGG | + | chr8_1:15520454-15520473 | Msa1181200:CDS | 50.0% | |
| CTGGCTGCGAGAAATGGTTC+CGG | - | chr8_1:15520405-15520424 | None:intergenic | 55.0% | |
| CTGGCTGCGAGAAATGGTTC+CGG | - | chr8_1:15520405-15520424 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 15518983 | 15520511 | 15518983 | ID=Msa1181200;Name=Msa1181200 |
| chr8_1 | mRNA | 15518983 | 15520511 | 15518983 | ID=Msa1181200-mRNA-1;Parent=Msa1181200;Name=Msa1181200-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.25|0|1|0.25|0.2|5|0|241 |
| chr8_1 | exon | 15518983 | 15519143 | 15518983 | ID=Msa1181200-mRNA-1:exon:5821;Parent=Msa1181200-mRNA-1 |
| chr8_1 | exon | 15519168 | 15519295 | 15519168 | ID=Msa1181200-mRNA-1:exon:5822;Parent=Msa1181200-mRNA-1 |
| chr8_1 | exon | 15519790 | 15519924 | 15519790 | ID=Msa1181200-mRNA-1:exon:5823;Parent=Msa1181200-mRNA-1 |
| chr8_1 | exon | 15520164 | 15520266 | 15520164 | ID=Msa1181200-mRNA-1:exon:5824;Parent=Msa1181200-mRNA-1 |
| chr8_1 | exon | 15520313 | 15520511 | 15520313 | ID=Msa1181200-mRNA-1:exon:5825;Parent=Msa1181200-mRNA-1 |
| chr8_1 | CDS | 15518983 | 15519143 | 15518983 | ID=Msa1181200-mRNA-1:cds;Parent=Msa1181200-mRNA-1 |
| chr8_1 | CDS | 15519168 | 15519295 | 15519168 | ID=Msa1181200-mRNA-1:cds;Parent=Msa1181200-mRNA-1 |
| chr8_1 | CDS | 15519790 | 15519924 | 15519790 | ID=Msa1181200-mRNA-1:cds;Parent=Msa1181200-mRNA-1 |
| chr8_1 | CDS | 15520164 | 15520266 | 15520164 | ID=Msa1181200-mRNA-1:cds;Parent=Msa1181200-mRNA-1 |
| chr8_1 | CDS | 15520313 | 15520511 | 15520313 | ID=Msa1181200-mRNA-1:cds;Parent=Msa1181200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
