Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1251170 | KEH40735.1 | 57.143 | 56 | 24 | 0 | 3 | 58 | 56 | 111 | 7.82e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090360 | Msa1251170 | 0.810687 | 1.018165e-50 | -8.615850e-47 |
| Msa0624470 | Msa1251170 | 0.811427 | 7.041209e-51 | -8.615850e-47 |
| Msa0625720 | Msa1251170 | 0.800387 | 1.475856e-48 | -8.615850e-47 |
| Msa0663390 | Msa1251170 | 0.806920 | 6.506638e-50 | -8.615850e-47 |
| Msa0667050 | Msa1251170 | 0.801338 | 9.437708e-49 | -8.615850e-47 |
| Msa0750880 | Msa1251170 | 0.809798 | 1.583841e-50 | -8.615850e-47 |
| Msa0810220 | Msa1251170 | 0.811779 | 5.903430e-51 | -8.615850e-47 |
| Msa0170570 | Msa1251170 | 0.809665 | 1.691450e-50 | -8.615850e-47 |
| Msa0184040 | Msa1251170 | 0.805735 | 1.156178e-49 | -8.615850e-47 |
| Msa0211150 | Msa1251170 | 0.802428 | 5.636820e-49 | -8.615850e-47 |
| Msa0216240 | Msa1251170 | 0.807387 | 5.181019e-50 | -8.615850e-47 |
| Msa0222620 | Msa1251170 | 0.808204 | 3.474749e-50 | -8.615850e-47 |
| Msa0223080 | Msa1251170 | 0.823505 | 1.336072e-53 | -8.615850e-47 |
| Msa1251160 | Msa1251170 | 0.805604 | 1.231866e-49 | -8.615850e-47 |
| Msa1251170 | Msa1303240 | 0.835691 | 1.448091e-56 | -8.615850e-47 |
| Msa1251170 | Msa1303250 | 0.821521 | 3.864089e-53 | -8.615850e-47 |
| Msa1251170 | Msa1306840 | 0.803680 | 3.104985e-49 | -8.615850e-47 |
| Msa1251170 | Msa1331910 | 0.812997 | 3.198616e-51 | -8.615850e-47 |
| Msa1251170 | Msa1353060 | 0.807509 | 4.883149e-50 | -8.615850e-47 |
| Msa1251170 | Msa1353980 | 0.822620 | 2.148600e-53 | -8.615850e-47 |
| Msa1251170 | Msa1361400 | 0.843252 | 1.571312e-58 | -8.615850e-47 |
| Msa1251170 | Msa1361410 | 0.842100 | 3.177178e-58 | -8.615850e-47 |
| Msa1251170 | Msa1385670 | 0.801602 | 8.333841e-49 | -8.615850e-47 |
| Msa1251170 | Msa1433390 | 0.810958 | 8.899159e-51 | -8.615850e-47 |
| Msa1251170 | Msa1446820 | 0.825837 | 3.770692e-54 | -8.615850e-47 |
| Msa1251170 | Msa1451160 | 0.840700 | 7.423261e-58 | -8.615850e-47 |
| Msa1251170 | Msa1466540 | 0.818404 | 1.995241e-52 | -8.615850e-47 |
| Msa0456880 | Msa1251170 | 0.801280 | 9.701392e-49 | -8.615850e-47 |
| Msa0481530 | Msa1251170 | 0.806697 | 7.253963e-50 | -8.615850e-47 |
| Msa0980880 | Msa1251170 | 0.802993 | 4.309311e-49 | -8.615850e-47 |
| Msa1078170 | Msa1251170 | 0.826675 | 2.382307e-54 | -8.615850e-47 |
| Msa1093840 | Msa1251170 | 0.830100 | 3.551363e-55 | -8.615850e-47 |
| Msa0243100 | Msa1251170 | 0.813404 | 2.604041e-51 | -8.615850e-47 |
| Msa0254790 | Msa1251170 | 0.801121 | 1.045683e-48 | -8.615850e-47 |
| Msa0264150 | Msa1251170 | 0.819772 | 9.744842e-53 | -8.615850e-47 |
| Msa0287650 | Msa1251170 | 0.816074 | 6.669223e-52 | -8.615850e-47 |
| Msa0302160 | Msa1251170 | 0.824190 | 9.233563e-54 | -8.615850e-47 |
| Msa0317730 | Msa1251170 | 0.813367 | 2.652827e-51 | -8.615850e-47 |
| Msa0319170 | Msa1251170 | 0.803422 | 3.512551e-49 | -8.615850e-47 |
| Msa0333920 | Msa1251170 | 0.809737 | 1.631726e-50 | -8.615850e-47 |
| Msa0333930 | Msa1251170 | 0.804167 | 2.460096e-49 | -8.615850e-47 |
| Msa0339490 | Msa1251170 | 0.825430 | 4.707720e-54 | -8.615850e-47 |
| Msa1123380 | Msa1251170 | 0.815842 | 7.515868e-52 | -8.615850e-47 |
| Msa1139890 | Msa1251170 | 0.816766 | 4.670156e-52 | -8.615850e-47 |
| Msa1172670 | Msa1251170 | 0.801440 | 8.997245e-49 | -8.615850e-47 |
| Msa1193290 | Msa1251170 | 0.834492 | 2.905529e-56 | -8.615850e-47 |
| Msa1214890 | Msa1251170 | 0.829766 | 4.283171e-55 | -8.615850e-47 |
| Msa1221060 | Msa1251170 | 0.837057 | 6.506843e-57 | -8.615850e-47 |
| Msa0529890 | Msa1251170 | 0.802833 | 4.649430e-49 | -8.615850e-47 |
| Msa0547720 | Msa1251170 | 0.822332 | 2.507382e-53 | -8.615850e-47 |
| Msa0557320 | Msa1251170 | 0.800072 | 1.711089e-48 | -8.615850e-47 |
| Msa0577500 | Msa1251170 | 0.800021 | 1.752036e-48 | -8.615850e-47 |
| Msa0585560 | Msa1251170 | 0.804630 | 1.969912e-49 | -8.615850e-47 |
| Msa0876060 | Msa1251170 | 0.808559 | 2.918968e-50 | -8.615850e-47 |
| Msa0876200 | Msa1251170 | 0.804324 | 2.282005e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGTAATCTGAACGAAAT+TGG | 0.193066 | 8_2:-46962773 | None:intergenic |
| TACCAGAAGATAAGATTATT+TGG | 0.207713 | 8_2:+46962789 | Msa1251170:CDS |
| CTGGTAATCTGAACGAAATT+GGG | 0.389759 | 8_2:-46962772 | None:intergenic |
| TGCCAAATAATCTTATCTTC+TGG | 0.431450 | 8_2:-46962791 | None:intergenic |
| GATTATTTGGCACGGCGAAA+AGG | 0.464105 | 8_2:+46962802 | Msa1251170:CDS |
| GCGCAGGCAGGATCGTCGTC+TGG | 0.469415 | 8_2:+46962881 | Msa1251170:CDS |
| AGGATGCTTTGTACTCGGTC+AGG | 0.493366 | 8_2:+46962822 | Msa1251170:CDS |
| TGAAGAAAAGAGAAGGGCGC+AGG | 0.541610 | 8_2:+46962865 | Msa1251170:CDS |
| GAAAAGAGAAGGGCGCAGGC+AGG | 0.547169 | 8_2:+46962869 | Msa1251170:CDS |
| CGAAAAGGATGCTTTGTACT+CGG | 0.565876 | 8_2:+46962817 | Msa1251170:CDS |
| CAGGTCAGCTTATCATCAAG+TGG | 0.582239 | 8_2:+46962841 | Msa1251170:CDS |
| AAGTGGGTGAAGAAAAGAGA+AGG | 0.598929 | 8_2:+46962858 | Msa1251170:CDS |
| GAAGATAAGATTATTTGGCA+CGG | 0.602997 | 8_2:+46962794 | Msa1251170:CDS |
| AGGTCAGCTTATCATCAAGT+GGG | 0.654150 | 8_2:+46962842 | Msa1251170:CDS |
| AGTGGGTGAAGAAAAGAGAA+GGG | 0.676090 | 8_2:+46962859 | Msa1251170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTACATAGAAATCAATT+GGG | + | chr8_2:46961973-46961992 | Msa1251170:intron | 15.0% |
| !! | AATTTACATAGAAATCAATT+GGG | + | chr8_2:46961973-46961992 | Msa1251170:intron | 15.0% |
| !!! | TTTTTTGTAGTTGTATCTTA+AGG | + | chr8_2:46961776-46961795 | Msa1251170:intron | 20.0% |
| !! | GAATTTACATAGAAATCAAT+TGG | + | chr8_2:46961972-46961991 | Msa1251170:intron | 20.0% |
| !! | ATTTACATAGAAATCAATTG+GGG | + | chr8_2:46961974-46961993 | Msa1251170:intron | 20.0% |
| !! | TTTATCATCCAACATTATAA+AGG | - | chr8_2:46962043-46962062 | None:intergenic | 20.0% |
| !! | CAAGTTCAAATTATAAAGAT+AGG | + | chr8_2:46962113-46962132 | Msa1251170:intron | 20.0% |
| !! | ATAACAGAAAGTTAAATCAA+TGG | - | chr8_2:46962150-46962169 | None:intergenic | 20.0% |
| !!! | TTTTTTGTAGTTGTATCTTA+AGG | + | chr8_2:46961776-46961795 | Msa1251170:intron | 20.0% |
| !! | GAATTTACATAGAAATCAAT+TGG | + | chr8_2:46961972-46961991 | Msa1251170:intron | 20.0% |
| !! | ATTTACATAGAAATCAATTG+GGG | + | chr8_2:46961974-46961993 | Msa1251170:intron | 20.0% |
| !! | TTTATCATCCAACATTATAA+AGG | - | chr8_2:46962043-46962062 | None:intergenic | 20.0% |
| !! | CAAGTTCAAATTATAAAGAT+AGG | + | chr8_2:46962113-46962132 | Msa1251170:intron | 20.0% |
| !! | ATAACAGAAAGTTAAATCAA+TGG | - | chr8_2:46962150-46962169 | None:intergenic | 20.0% |
| ! | AACAAAAATGAACGTTACTA+AGG | - | chr8_2:46961833-46961852 | None:intergenic | 25.0% |
| ! | TACTTTCAACTGAAAAAACA+AGG | - | chr8_2:46961934-46961953 | None:intergenic | 25.0% |
| !! | AGTTTGTTCCTTTATAATGT+TGG | + | chr8_2:46962032-46962051 | Msa1251170:intron | 25.0% |
| ! | CTTTCTGTTATAAATAAGAC+TGG | + | chr8_2:46962159-46962178 | Msa1251170:intron | 25.0% |
| ! | AATCTATGTTAGCTAAATTC+TGG | + | chr8_2:46962256-46962275 | Msa1251170:intron | 25.0% |
| ! | TCAAAATCTAGCATGATAAT+TGG | + | chr8_2:46962592-46962611 | Msa1251170:intron | 25.0% |
| ! | TACCAGAAGATAAGATTATT+TGG | + | chr8_2:46962789-46962808 | Msa1251170:CDS | 25.0% |
| ! | AACAAAAATGAACGTTACTA+AGG | - | chr8_2:46961833-46961852 | None:intergenic | 25.0% |
| ! | TACTTTCAACTGAAAAAACA+AGG | - | chr8_2:46961934-46961953 | None:intergenic | 25.0% |
| !! | AGTTTGTTCCTTTATAATGT+TGG | + | chr8_2:46962032-46962051 | Msa1251170:intron | 25.0% |
| ! | CTTTCTGTTATAAATAAGAC+TGG | + | chr8_2:46962159-46962178 | Msa1251170:intron | 25.0% |
| ! | AATCTATGTTAGCTAAATTC+TGG | + | chr8_2:46962256-46962275 | Msa1251170:intron | 25.0% |
| ! | TCAAAATCTAGCATGATAAT+TGG | + | chr8_2:46962592-46962611 | Msa1251170:intron | 25.0% |
| ! | TACCAGAAGATAAGATTATT+TGG | + | chr8_2:46962789-46962808 | Msa1251170:CDS | 25.0% |
| ATGTTGGATGATAAAGAGTA+TGG | + | chr8_2:46962048-46962067 | Msa1251170:intron | 30.0% | |
| CTCTCTAATAAAGACAAAGA+AGG | + | chr8_2:46962216-46962235 | Msa1251170:intron | 30.0% | |
| TATGTTAGCTAAATTCTGGT+GGG | + | chr8_2:46962260-46962279 | Msa1251170:intron | 30.0% | |
| TAATAGAGAACACACTTTGA+TGG | + | chr8_2:46962422-46962441 | Msa1251170:intron | 30.0% | |
| AATAGAGAACACACTTTGAT+GGG | + | chr8_2:46962423-46962442 | Msa1251170:intron | 30.0% | |
| AAATCAAGATACTATCTGAG+AGG | + | chr8_2:46962456-46962475 | Msa1251170:intron | 30.0% | |
| GATATTTACCAAGTTATGCA+TGG | + | chr8_2:46962502-46962521 | Msa1251170:intron | 30.0% | |
| !! | TTTTGGTCTAAGGTATTCAT+GGG | - | chr8_2:46962651-46962670 | None:intergenic | 30.0% |
| !! | ATTTTGGTCTAAGGTATTCA+TGG | - | chr8_2:46962652-46962671 | None:intergenic | 30.0% |
| ! | ATTGATTCTGATATGAGACA+TGG | + | chr8_2:46962690-46962709 | Msa1251170:intron | 30.0% |
| TGCCAAATAATCTTATCTTC+TGG | - | chr8_2:46962794-46962813 | None:intergenic | 30.0% | |
| GAAGATAAGATTATTTGGCA+CGG | + | chr8_2:46962794-46962813 | Msa1251170:CDS | 30.0% | |
| ATGTTGGATGATAAAGAGTA+TGG | + | chr8_2:46962048-46962067 | Msa1251170:intron | 30.0% | |
| CTCTCTAATAAAGACAAAGA+AGG | + | chr8_2:46962216-46962235 | Msa1251170:intron | 30.0% | |
| TATGTTAGCTAAATTCTGGT+GGG | + | chr8_2:46962260-46962279 | Msa1251170:intron | 30.0% | |
| TAATAGAGAACACACTTTGA+TGG | + | chr8_2:46962422-46962441 | Msa1251170:intron | 30.0% | |
| AATAGAGAACACACTTTGAT+GGG | + | chr8_2:46962423-46962442 | Msa1251170:intron | 30.0% | |
| AAATCAAGATACTATCTGAG+AGG | + | chr8_2:46962456-46962475 | Msa1251170:intron | 30.0% | |
| GATATTTACCAAGTTATGCA+TGG | + | chr8_2:46962502-46962521 | Msa1251170:intron | 30.0% | |
| !! | TTTTGGTCTAAGGTATTCAT+GGG | - | chr8_2:46962651-46962670 | None:intergenic | 30.0% |
| !! | ATTTTGGTCTAAGGTATTCA+TGG | - | chr8_2:46962652-46962671 | None:intergenic | 30.0% |
| ! | ATTGATTCTGATATGAGACA+TGG | + | chr8_2:46962690-46962709 | Msa1251170:intron | 30.0% |
| TGCCAAATAATCTTATCTTC+TGG | - | chr8_2:46962794-46962813 | None:intergenic | 30.0% | |
| GAAGATAAGATTATTTGGCA+CGG | + | chr8_2:46962794-46962813 | Msa1251170:CDS | 30.0% | |
| TACTAAGGTAATTGCAGCAA+AGG | - | chr8_2:46961818-46961837 | None:intergenic | 35.0% | |
| CTATGTTAGCTAAATTCTGG+TGG | + | chr8_2:46962259-46962278 | Msa1251170:intron | 35.0% | |
| TAAATTCTGGTGGGAATCAA+AGG | + | chr8_2:46962269-46962288 | Msa1251170:intron | 35.0% | |
| CTAGCAAAATCCAAAAGTAG+AGG | + | chr8_2:46962330-46962349 | Msa1251170:intron | 35.0% | |
| CAAAATCCAAAAGTAGAGGT+GGG | + | chr8_2:46962334-46962353 | Msa1251170:intron | 35.0% | |
| TGATTTCAACAAAGCCTCAT+TGG | + | chr8_2:46962377-46962396 | Msa1251170:intron | 35.0% | |
| ATAGAGAACACACTTTGATG+GGG | + | chr8_2:46962424-46962443 | Msa1251170:intron | 35.0% | |
| ACTTGGTAAATATCCAGTGT+TGG | - | chr8_2:46962496-46962515 | None:intergenic | 35.0% | |
| ! | TTTGGTCTAAGGTATTCATG+GGG | - | chr8_2:46962650-46962669 | None:intergenic | 35.0% |
| !! | TACAACAGCATTTTGGTCTA+AGG | - | chr8_2:46962661-46962680 | None:intergenic | 35.0% |
| TTCTGTGTTCAATGAGTTTG+AGG | + | chr8_2:46962730-46962749 | Msa1251170:intron | 35.0% | |
| CTGGTAATCTGAACGAAATT+GGG | - | chr8_2:46962775-46962794 | None:intergenic | 35.0% | |
| TCTGGTAATCTGAACGAAAT+TGG | - | chr8_2:46962776-46962795 | None:intergenic | 35.0% | |
| TACTAAGGTAATTGCAGCAA+AGG | - | chr8_2:46961818-46961837 | None:intergenic | 35.0% | |
| CTATGTTAGCTAAATTCTGG+TGG | + | chr8_2:46962259-46962278 | Msa1251170:intron | 35.0% | |
| TAAATTCTGGTGGGAATCAA+AGG | + | chr8_2:46962269-46962288 | Msa1251170:intron | 35.0% | |
| CTAGCAAAATCCAAAAGTAG+AGG | + | chr8_2:46962330-46962349 | Msa1251170:intron | 35.0% | |
| CAAAATCCAAAAGTAGAGGT+GGG | + | chr8_2:46962334-46962353 | Msa1251170:intron | 35.0% | |
| TGATTTCAACAAAGCCTCAT+TGG | + | chr8_2:46962377-46962396 | Msa1251170:intron | 35.0% | |
| ATAGAGAACACACTTTGATG+GGG | + | chr8_2:46962424-46962443 | Msa1251170:intron | 35.0% | |
| ACTTGGTAAATATCCAGTGT+TGG | - | chr8_2:46962496-46962515 | None:intergenic | 35.0% | |
| ! | TTTGGTCTAAGGTATTCATG+GGG | - | chr8_2:46962650-46962669 | None:intergenic | 35.0% |
| !! | TACAACAGCATTTTGGTCTA+AGG | - | chr8_2:46962661-46962680 | None:intergenic | 35.0% |
| TTCTGTGTTCAATGAGTTTG+AGG | + | chr8_2:46962730-46962749 | Msa1251170:intron | 35.0% | |
| CTGGTAATCTGAACGAAATT+GGG | - | chr8_2:46962775-46962794 | None:intergenic | 35.0% | |
| TCTGGTAATCTGAACGAAAT+TGG | - | chr8_2:46962776-46962795 | None:intergenic | 35.0% | |
| TAAGGTAATTGCAGCAAAGG+TGG | - | chr8_2:46961815-46961834 | None:intergenic | 40.0% | |
| AGACAAAGAAGGATGTTGCT+CGG | + | chr8_2:46962227-46962246 | Msa1251170:intron | 40.0% | |
| GCAAAATCCAAAAGTAGAGG+TGG | + | chr8_2:46962333-46962352 | Msa1251170:intron | 40.0% | |
| AAAGCCTCATTGGAAAAGCA+TGG | + | chr8_2:46962387-46962406 | Msa1251170:intron | 40.0% | |
| CTATCTGAGAGGAAACTTCA+TGG | + | chr8_2:46962467-46962486 | Msa1251170:intron | 40.0% | |
| AGCATACTCCATGCATAACT+TGG | - | chr8_2:46962513-46962532 | None:intergenic | 40.0% | |
| CTAGCATGATAATTGGCTAC+CGG | + | chr8_2:46962599-46962618 | Msa1251170:intron | 40.0% | |
| ! | GTTCAGCTACAACAGCATTT+TGG | - | chr8_2:46962668-46962687 | None:intergenic | 40.0% |
| CGAAAAGGATGCTTTGTACT+CGG | + | chr8_2:46962817-46962836 | Msa1251170:CDS | 40.0% | |
| AGGTCAGCTTATCATCAAGT+GGG | + | chr8_2:46962842-46962861 | Msa1251170:CDS | 40.0% | |
| AAGTGGGTGAAGAAAAGAGA+AGG | + | chr8_2:46962858-46962877 | Msa1251170:CDS | 40.0% | |
| AGTGGGTGAAGAAAAGAGAA+GGG | + | chr8_2:46962859-46962878 | Msa1251170:CDS | 40.0% | |
| TAAGGTAATTGCAGCAAAGG+TGG | - | chr8_2:46961815-46961834 | None:intergenic | 40.0% | |
| AGACAAAGAAGGATGTTGCT+CGG | + | chr8_2:46962227-46962246 | Msa1251170:intron | 40.0% | |
| GCAAAATCCAAAAGTAGAGG+TGG | + | chr8_2:46962333-46962352 | Msa1251170:intron | 40.0% | |
| AAAGCCTCATTGGAAAAGCA+TGG | + | chr8_2:46962387-46962406 | Msa1251170:intron | 40.0% | |
| CTATCTGAGAGGAAACTTCA+TGG | + | chr8_2:46962467-46962486 | Msa1251170:intron | 40.0% | |
| AGCATACTCCATGCATAACT+TGG | - | chr8_2:46962513-46962532 | None:intergenic | 40.0% | |
| CTAGCATGATAATTGGCTAC+CGG | + | chr8_2:46962599-46962618 | Msa1251170:intron | 40.0% | |
| ! | GTTCAGCTACAACAGCATTT+TGG | - | chr8_2:46962668-46962687 | None:intergenic | 40.0% |
| CGAAAAGGATGCTTTGTACT+CGG | + | chr8_2:46962817-46962836 | Msa1251170:CDS | 40.0% | |
| AGGTCAGCTTATCATCAAGT+GGG | + | chr8_2:46962842-46962861 | Msa1251170:CDS | 40.0% | |
| AAGTGGGTGAAGAAAAGAGA+AGG | + | chr8_2:46962858-46962877 | Msa1251170:CDS | 40.0% | |
| AGTGGGTGAAGAAAAGAGAA+GGG | + | chr8_2:46962859-46962878 | Msa1251170:CDS | 40.0% | |
| AATTGGGGAACTGAAGTGTG+TGG | + | chr8_2:46961989-46962008 | Msa1251170:intron | 45.0% | |
| TTCTGGTGGGAATCAAAGGA+AGG | + | chr8_2:46962273-46962292 | Msa1251170:intron | 45.0% | |
| GGGAATCAAAGGAAGGAGAA+AGG | + | chr8_2:46962280-46962299 | Msa1251170:intron | 45.0% | |
| ATCCAAAAGTAGAGGTGGGA+TGG | + | chr8_2:46962338-46962357 | Msa1251170:intron | 45.0% | |
| TCCAAAAGTAGAGGTGGGAT+GGG | + | chr8_2:46962339-46962358 | Msa1251170:intron | 45.0% | |
| ! | CCAACCATGCTTTTCCAATG+AGG | - | chr8_2:46962394-46962413 | None:intergenic | 45.0% |
| ! | CCTCATTGGAAAAGCATGGT+TGG | + | chr8_2:46962391-46962410 | Msa1251170:intron | 45.0% |
| AGAACACACTTTGATGGGGA+AGG | + | chr8_2:46962428-46962447 | Msa1251170:intron | 45.0% | |
| AACTTCATGGAAGCCAACAC+TGG | + | chr8_2:46962480-46962499 | Msa1251170:intron | 45.0% | |
| TGCAGATGGAGGATATGGAA+TGG | + | chr8_2:46962561-46962580 | Msa1251170:intron | 45.0% | |
| !! | ACTTTGAAGCCAGTTTGTGC+CGG | - | chr8_2:46962621-46962640 | None:intergenic | 45.0% |
| GATTATTTGGCACGGCGAAA+AGG | + | chr8_2:46962802-46962821 | Msa1251170:CDS | 45.0% | |
| CAGGTCAGCTTATCATCAAG+TGG | + | chr8_2:46962841-46962860 | Msa1251170:CDS | 45.0% | |
| AATTGGGGAACTGAAGTGTG+TGG | + | chr8_2:46961989-46962008 | Msa1251170:intron | 45.0% | |
| TTCTGGTGGGAATCAAAGGA+AGG | + | chr8_2:46962273-46962292 | Msa1251170:intron | 45.0% | |
| GGGAATCAAAGGAAGGAGAA+AGG | + | chr8_2:46962280-46962299 | Msa1251170:intron | 45.0% | |
| ATCCAAAAGTAGAGGTGGGA+TGG | + | chr8_2:46962338-46962357 | Msa1251170:intron | 45.0% | |
| TCCAAAAGTAGAGGTGGGAT+GGG | + | chr8_2:46962339-46962358 | Msa1251170:intron | 45.0% | |
| ! | CCAACCATGCTTTTCCAATG+AGG | - | chr8_2:46962394-46962413 | None:intergenic | 45.0% |
| ! | CCTCATTGGAAAAGCATGGT+TGG | + | chr8_2:46962391-46962410 | Msa1251170:intron | 45.0% |
| AGAACACACTTTGATGGGGA+AGG | + | chr8_2:46962428-46962447 | Msa1251170:intron | 45.0% | |
| AACTTCATGGAAGCCAACAC+TGG | + | chr8_2:46962480-46962499 | Msa1251170:intron | 45.0% | |
| TGCAGATGGAGGATATGGAA+TGG | + | chr8_2:46962561-46962580 | Msa1251170:intron | 45.0% | |
| !! | ACTTTGAAGCCAGTTTGTGC+CGG | - | chr8_2:46962621-46962640 | None:intergenic | 45.0% |
| GATTATTTGGCACGGCGAAA+AGG | + | chr8_2:46962802-46962821 | Msa1251170:CDS | 45.0% | |
| CAGGTCAGCTTATCATCAAG+TGG | + | chr8_2:46962841-46962860 | Msa1251170:CDS | 45.0% | |
| ! | TCCCATCCCACCTCTACTTT+TGG | - | chr8_2:46962343-46962362 | None:intergenic | 50.0% |
| AGAGGTGGGATGGGATTTAG+AGG | + | chr8_2:46962348-46962367 | Msa1251170:intron | 50.0% | |
| TATCCTCCATCTGCACCCTT+TGG | - | chr8_2:46962556-46962575 | None:intergenic | 50.0% | |
| ! | AAGGGTGCAGATGGAGGATA+TGG | + | chr8_2:46962556-46962575 | Msa1251170:intron | 50.0% |
| AATTGGCTACCGGCACAAAC+TGG | + | chr8_2:46962609-46962628 | Msa1251170:intron | 50.0% | |
| AGGATGCTTTGTACTCGGTC+AGG | + | chr8_2:46962822-46962841 | Msa1251170:CDS | 50.0% | |
| ! | TGAAGAAAAGAGAAGGGCGC+AGG | + | chr8_2:46962865-46962884 | Msa1251170:CDS | 50.0% |
| ! | TCCCATCCCACCTCTACTTT+TGG | - | chr8_2:46962343-46962362 | None:intergenic | 50.0% |
| AGAGGTGGGATGGGATTTAG+AGG | + | chr8_2:46962348-46962367 | Msa1251170:intron | 50.0% | |
| TATCCTCCATCTGCACCCTT+TGG | - | chr8_2:46962556-46962575 | None:intergenic | 50.0% | |
| ! | AAGGGTGCAGATGGAGGATA+TGG | + | chr8_2:46962556-46962575 | Msa1251170:intron | 50.0% |
| AATTGGCTACCGGCACAAAC+TGG | + | chr8_2:46962609-46962628 | Msa1251170:intron | 50.0% | |
| AGGATGCTTTGTACTCGGTC+AGG | + | chr8_2:46962822-46962841 | Msa1251170:CDS | 50.0% | |
| ! | TGAAGAAAAGAGAAGGGCGC+AGG | + | chr8_2:46962865-46962884 | Msa1251170:CDS | 50.0% |
| AGAAGGATGTTGCTCGGAGC+TGG | + | chr8_2:46962233-46962252 | Msa1251170:intron | 55.0% | |
| GAGTATGCTGAGTGCGAGAG+TGG | + | chr8_2:46962524-46962543 | Msa1251170:intron | 55.0% | |
| CGAGAGTGGTTGTGGCCAAA+GGG | + | chr8_2:46962538-46962557 | Msa1251170:intron | 55.0% | |
| ! | TTGTGGCCAAAGGGTGCAGA+TGG | + | chr8_2:46962547-46962566 | Msa1251170:intron | 55.0% |
| AGAAGGATGTTGCTCGGAGC+TGG | + | chr8_2:46962233-46962252 | Msa1251170:intron | 55.0% | |
| GAGTATGCTGAGTGCGAGAG+TGG | + | chr8_2:46962524-46962543 | Msa1251170:intron | 55.0% | |
| CGAGAGTGGTTGTGGCCAAA+GGG | + | chr8_2:46962538-46962557 | Msa1251170:intron | 55.0% | |
| ! | TTGTGGCCAAAGGGTGCAGA+TGG | + | chr8_2:46962547-46962566 | Msa1251170:intron | 55.0% |
| GCTGAGTGCGAGAGTGGTTG+TGG | + | chr8_2:46962530-46962549 | Msa1251170:intron | 60.0% | |
| GCGAGAGTGGTTGTGGCCAA+AGG | + | chr8_2:46962537-46962556 | Msa1251170:intron | 60.0% | |
| ! | TGGCCAAAGGGTGCAGATGG+AGG | + | chr8_2:46962550-46962569 | Msa1251170:intron | 60.0% |
| ! | GAAAAGAGAAGGGCGCAGGC+AGG | + | chr8_2:46962869-46962888 | Msa1251170:CDS | 60.0% |
| GCTGAGTGCGAGAGTGGTTG+TGG | + | chr8_2:46962530-46962549 | Msa1251170:intron | 60.0% | |
| GCGAGAGTGGTTGTGGCCAA+AGG | + | chr8_2:46962537-46962556 | Msa1251170:intron | 60.0% | |
| ! | TGGCCAAAGGGTGCAGATGG+AGG | + | chr8_2:46962550-46962569 | Msa1251170:intron | 60.0% |
| ! | GAAAAGAGAAGGGCGCAGGC+AGG | + | chr8_2:46962869-46962888 | Msa1251170:CDS | 60.0% |
| GCGCAGGCAGGATCGTCGTC+TGG | + | chr8_2:46962881-46962900 | Msa1251170:CDS | 70.0% | |
| GCGCAGGCAGGATCGTCGTC+TGG | + | chr8_2:46962881-46962900 | Msa1251170:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 46961755 | 46962922 | 46961755 | ID=Msa1251170;Name=Msa1251170 |
| chr8_2 | mRNA | 46961755 | 46962922 | 46961755 | ID=Msa1251170-mRNA-1;Parent=Msa1251170;Name=Msa1251170-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|0.33|0|0.33|3|0|60 |
| chr8_2 | exon | 46961755 | 46961760 | 46961755 | ID=Msa1251170-mRNA-1:exon:14213;Parent=Msa1251170-mRNA-1 |
| chr8_2 | exon | 46961945 | 46961950 | 46961945 | ID=Msa1251170-mRNA-1:exon:14214;Parent=Msa1251170-mRNA-1 |
| chr8_2 | exon | 46962752 | 46962922 | 46962752 | ID=Msa1251170-mRNA-1:exon:14215;Parent=Msa1251170-mRNA-1 |
| chr8_2 | CDS | 46961755 | 46961760 | 46961755 | ID=Msa1251170-mRNA-1:cds;Parent=Msa1251170-mRNA-1 |
| chr8_2 | CDS | 46961945 | 46961950 | 46961945 | ID=Msa1251170-mRNA-1:cds;Parent=Msa1251170-mRNA-1 |
| chr8_2 | CDS | 46962752 | 46962922 | 46962752 | ID=Msa1251170-mRNA-1:cds;Parent=Msa1251170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
