AlfalfaGEDB | Msa0254790

M. sativa cultivar zhongmu-4 / Msa0254790

KEGG: K03504
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576
PFAM: PF09507.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254790	XP_003596313.1	90.744	551	26	2	1	550	1	527	0.0	967

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254790	sp\|Q9EQ28\|DPOD3_MOUSE	29.515	227	126	8	9	214	6	219	1.48e-13	76.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254790	G7ITE6	90.744	551	26	2	1	550	1	527	0.0	967

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0254790	0.825016	5.898122e-54	-8.615850e-47
Msa0001450	Msa0254790	0.805096	1.574556e-49	-8.615850e-47
Msa0001940	Msa0254790	0.813946	1.978805e-51	-8.615850e-47
Msa0002560	Msa0254790	0.813662	2.284946e-51	-8.615850e-47
Msa0002680	Msa0254790	0.810679	1.022452e-50	-8.615850e-47
Msa0002710	Msa0254790	0.820821	5.599997e-53	-8.615850e-47
Msa0003700	Msa0254790	0.837501	5.008394e-57	-8.615850e-47
Msa0003720	Msa0254790	0.819060	1.416099e-52	-8.615850e-47
Msa0003890	Msa0254790	0.833291	5.800955e-56	-8.615850e-47
Msa0005890	Msa0254790	0.802039	6.779168e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254790	MtrunA17_Chr2g0315481	90.744	551	26	2	1	550	1	527	0.0	967

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254790	AT1G78650.1	42.478	565	251	15	1	548	1	508	8.35e-112	342

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Find 139 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGCTCTGTTAATGG+AGG	0.643109	2_2:+48389495	Msa0254790:CDS
AAAATTGGGGATATTTCCCC+AGG	0.482098	2_2:+48386234	Msa0254790:five_prime_UTR
AAACATAAAGGATCCCAAAC+AGG	0.405833	2_2:+48391114	Msa0254790:CDS
AAAGTACAAGCTGATAAAAG+TGG	0.514890	2_2:+48389480	Msa0254790:CDS
AACATAAAGGATCCCAAACA+GGG	0.599044	2_2:+48391115	Msa0254790:CDS
AACATGATTTCAAAACCTGC+AGG	0.524551	2_2:+48389588	Msa0254790:CDS
AACTGAAGTAGTCTGGGAGG+GGG	0.575395	2_2:+48390477	Msa0254790:CDS
AAGAATGAAAGCAATGGTAC+AGG	0.533258	2_2:+48389378	Msa0254790:CDS
AAGACCAGGATTGATGAACG+AGG	0.744480	2_2:+48390204	Msa0254790:CDS
AAGCACAGAAAGAGTTTGAT+GGG	0.538769	2_2:+48387759	Msa0254790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGATTCTATTTATACCTG+GGG	-	chr2_2:48386253-48386272	None:intergenic	30.0%
AGATTCGATTTCGTGAATTA+GGG	-	chr2_2:48386404-48386423	None:intergenic	30.0%
GGAAATTGAAGAGATTTGAT+TGG	-	chr2_2:48386469-48386488	None:intergenic	30.0%
ATCAAATGAAGCAAAAAGGT+AGG	+	chr2_2:48386613-48386632	Msa0254790:intron	30.0%
TCAAATGAAGCAAAAAGGTA+GGG	+	chr2_2:48386614-48386633	Msa0254790:intron	30.0%
TTTGTTGAAAAACATGAGGA+TGG	+	chr2_2:48386770-48386789	Msa0254790:CDS	30.0%
TTGTTGAAAAACATGAGGAT+GGG	+	chr2_2:48386771-48386790	Msa0254790:CDS	30.0%
TCTGTACAAAAAGATGCTAA+AGG	-	chr2_2:48387464-48387483	None:intergenic	30.0%
TTCATGTCATGGTTTCATAT+AGG	-	chr2_2:48387516-48387535	None:intergenic	30.0%
ATTGACCATACCAAAATGAT+GGG	-	chr2_2:48387559-48387578	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	48386211	48391448	48386211	ID=Msa0254790;Name=Msa0254790
chr2_2	mRNA	48386211	48391448	48386211	ID=Msa0254790-mRNA-1;Parent=Msa0254790;Name=Msa0254790-mRNA-1;_AED=0.10;_eAED=0.10;_QI=168\|0.75\|0.88\|0.88\|1\|1\|9\|277\|550
chr2_2	exon	48386211	48386447	48386211	ID=Msa0254790-mRNA-1:exon:14603;Parent=Msa0254790-mRNA-1
chr2_2	exon	48386575	48386630	48386575	ID=Msa0254790-mRNA-1:exon:14604;Parent=Msa0254790-mRNA-1
chr2_2	exon	48386757	48386881	48386757	ID=Msa0254790-mRNA-1:exon:14605;Parent=Msa0254790-mRNA-1
chr2_2	exon	48387759	48387918	48387759	ID=Msa0254790-mRNA-1:exon:14606;Parent=Msa0254790-mRNA-1
chr2_2	exon	48389176	48389609	48389176	ID=Msa0254790-mRNA-1:exon:14607;Parent=Msa0254790-mRNA-1
chr2_2	exon	48389746	48390234	48389746	ID=Msa0254790-mRNA-1:exon:14608;Parent=Msa0254790-mRNA-1
chr2_2	exon	48390476	48390596	48390476	ID=Msa0254790-mRNA-1:exon:14609;Parent=Msa0254790-mRNA-1
chr2_2	exon	48390686	48390757	48390686	ID=Msa0254790-mRNA-1:exon:14610;Parent=Msa0254790-mRNA-1
chr2_2	exon	48391045	48391448	48391045	ID=Msa0254790-mRNA-1:exon:14611;Parent=Msa0254790-mRNA-1
chr2_2	five_prime_UTR	48386211	48386378	48386211	ID=Msa0254790-mRNA-1:five_prime_utr;Parent=Msa0254790-mRNA-1
chr2_2	CDS	48386379	48386447	48386379	ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2	CDS	48386575	48386630	48386575	ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2	CDS	48386757	48386881	48386757	ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2	CDS	48387759	48387918	48387759	ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2	CDS	48389176	48389609	48389176	ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2	CDS	48389746	48390234	48389746	ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2	CDS	48390476	48390596	48390476	ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2	CDS	48390686	48390757	48390686	ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2	CDS	48391045	48391171	48391045	ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2	three_prime_UTR	48391172	48391448	48391172	ID=Msa0254790-mRNA-1:three_prime_utr;Parent=Msa0254790-mRNA-1

Gene Sequence

>Msa0254790

ATGTCGAACACCGAAACCCTATCCCTAATTCACGAAATCGAATCTCTCGTCTCAGATCAACTTCAAGTGGTTTCATACAAGTGGCTTAGTCGCAATTATAAGATATCATCAAATGAAGCAAAAAGGTTGCTTCAGGAATTTGTTGAAAAACATGAGGATGGGTTGGAAGTGGTGTATGCTTTGTCTGGCTGGTTAAAGAGTAGTATTCCTAGCTACCATGTAAAGCTTGTTACTGGGACAATGCTTGCAGAAGCACAGAAAGAGTTTGATGGGAAATGCTCAGTCCAGGTATATAGTGTGCAAGCTAGTATTCCAAAGGATGCAGCTGTGCTTTGGAATGCAGAATTCATTCAAGCAGAAGAGCTCTTCAAGCAGTCTCCCAAAGATGATAATTGCTTGAGAGACAATAGATTCTGTGGGATCTCTAATTCTTTTGTACAAAGGAACGTGGTCGTGGATGGACAACCAGCTGTTTCTGCCACTCCACAAGTAAAATCTGTAGTAGGCTTGGGACCAACAAAGAGTAATGTTGTTCACCAACCTCCGAAAAACATAGCACACAATTCTATTGCTAAAGTTGATCTCAAAACACAGAATGTGGTGAAAGATGTCAAGAATGAAAGCAATGGTACAGGAAATGCAGGAGTTCATGATAACATCAATAAACCTATTGCAGAGAAAGAAAAGTCTCTTCCCTTGCCCGCAGGTAAAAAGAAAGTACAAGCTGATAAAAGTGGCTCTGTTAATGGAGGTTCGTTGGCAAGCTTCTGGGGTCGTCCATCTGCAAAACCCAAGCCTTGCGCCGTGCCAGAGGAAAATAGTAACATGATTTCAAAACCTGCAGAAGCTATTGAAAATGCCCAAACTTGTGCTCATGAAGCAGTACTGGGTGACAGTGATGACGATGATAATCAAGGTGTCGCCTTAAGAAAATCATCCAACAGGAAAAGGAGGGTTGTCTTTGATTTCTCAGATGAAGATGAAGATGCCATCAGTTTAGCATCACCTGAGGTCCCTAGTAAACTGTCATCTAAAGATTCCAAACAAAATGACAAAAAGTCATTAGAGAAAGTTGCTTTGAATTTTGATTTACCGGTAGAAATTAAACCATTGGTTAAGGAAGAGAGAGTAACTGAGAAAAAAGTTTTCCAACCACCAAAAGATTTATCAGTTATCACCAAGTGCACAAGTACTGGGAAACCATCTACTGAGAAGTTGCAGAGCAGTGCTCCGGAAATTTGTGTAAATAAGGATAGTGCAAAAAAGGTCTCTTCAGGTTCACCTAAGAGGAGAAAAGTGATGAAGACCAGGATTGATGAACGAGGAAGAGAAGTAACTGAAGTAGTCTGGGAGGGGGAGGAGACAGAGCCAAAGAAAGATGACAAGGATACAGCTAAGAAAGCTGATACGGTTGCAAAGAAAGCGGACAATATATCTACCAAAGCTGTTAACGGGTGTCCCTTGAAGTATACAGTGATTCTCATTAGGTTTGCTTTGCACAGTCTTATTTCTAAAGTTGCTTCAAGCGCACCGGCAACTAAGAAGCCACCAGCTACATCAAATACTACTGGAAGAGGAGGAAGCAAGAAAGCAGGAAACATAAAGGATCCCAAACAGGGCAATATTCTTTCATTTTTCAAAAAGAAAGTATGA

Protein sequence

>Msa0254790

MSNTETLSLIHEIESLVSDQLQVVSYKWLSRNYKISSNEAKRLLQEFVEKHEDGLEVVYALSGWLKSSIPSYHVKLVTGTMLAEAQKEFDGKCSVQVYSVQASIPKDAAVLWNAEFIQAEELFKQSPKDDNCLRDNRFCGISNSFVQRNVVVDGQPAVSATPQVKSVVGLGPTKSNVVHQPPKNIAHNSIAKVDLKTQNVVKDVKNESNGTGNAGVHDNINKPIAEKEKSLPLPAGKKKVQADKSGSVNGGSLASFWGRPSAKPKPCAVPEENSNMISKPAEAIENAQTCAHEAVLGDSDDDDNQGVALRKSSNRKRRVVFDFSDEDEDAISLASPEVPSKLSSKDSKQNDKKSLEKVALNFDLPVEIKPLVKEERVTEKKVFQPPKDLSVITKCTSTGKPSTEKLQSSAPEICVNKDSAKKVSSGSPKRRKVMKTRIDERGREVTEVVWEGEETEPKKDDKDTAKKADTVAKKADNISTKAVNGCPLKYTVILIRFALHSLISKVASSAPATKKPPATSNTTGRGGSKKAGNIKDPKQGNILSFFKKKV*