AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0254790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0254790 MtrunA17_Chr2g0315481 90.744 551 26 2 1 550 1 527 0.0 967
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0254790 AT1G78650.1 42.478 565 251 15 1 548 1 508 8.35e-112 342

Find 139 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTCGATTTCGTGAATT+AGG 0.080211 2_2:-48386402 None:intergenic
GAGGTTCGTTGGCAAGCTTC+TGG 0.168208 2_2:+48389514 Msa0254790:CDS
AGAAATACACGCCACATTTA+AGG 0.192666 2_2:-48391336 None:intergenic
CTCTGGCACGGCGCAAGGCT+TGG 0.197267 2_2:-48389556 None:intergenic
TCTCAAGCAATTATCATCTT+TGG 0.205912 2_2:-48387888 None:intergenic
GTATCCTTGTCATCTTTCTT+TGG 0.235412 2_2:-48390511 None:intergenic
TCCTTATTTACACAAATTTC+CGG 0.248308 2_2:-48390132 None:intergenic
TCCATTCCTCCACAATATAT+TGG 0.255325 2_2:+48386276 Msa0254790:five_prime_UTR
AGAACGAAACGACGGTAAAA+AGG 0.276833 2_2:-48386344 None:intergenic
TGAAAGAATATTGCCCTGTT+TGG 0.290751 2_2:-48391128 None:intergenic
GATAAAAGTGGCTCTGTTAA+TGG 0.294110 2_2:+48389492 Msa0254790:CDS
CTGCTTCATGAGCACAAGTT+TGG 0.297917 2_2:-48389762 None:intergenic
GTGATAACTGATAAATCTTT+TGG 0.315080 2_2:-48390057 None:intergenic
TGTTATATGTAGGTTGCTTC+AGG 0.317087 2_2:+48386745 Msa0254790:intron
CTCAAGCAATTATCATCTTT+GGG 0.324679 2_2:-48387887 None:intergenic
CTCTGCAACTTCTCAGTAGA+TGG 0.327203 2_2:-48390102 None:intergenic
TACCATGTAAAGCTTGTTAC+TGG 0.332352 2_2:+48386845 Msa0254790:CDS
GTGAATTAGGGATAGGGTTT+CGG 0.334535 2_2:-48386389 None:intergenic
AGTATACAGTGATTCTCATT+AGG 0.345658 2_2:+48390697 Msa0254790:CDS
TCCGGAAATTTGTGTAAATA+AGG 0.346682 2_2:+48390131 Msa0254790:CDS
AGATTCGATTTCGTGAATTA+GGG 0.347776 2_2:-48386401 None:intergenic
TCTTTAGATGACAGTTTACT+AGG 0.350822 2_2:-48389916 None:intergenic
CAAAGCACAGCTGCATCCTT+TGG 0.355427 2_2:-48387821 None:intergenic
TCTGGCACGGCGCAAGGCTT+GGG 0.359691 2_2:-48389555 None:intergenic
CTTCAGTAACTGAAGTAGTC+TGG 0.361033 2_2:+48390470 Msa0254790:intron
TATCATCAAATGAAGCAAAA+AGG 0.364120 2_2:+48386609 Msa0254790:CDS
CACTAACCCGTTAACAGCTT+TGG 0.369733 2_2:-48390581 None:intergenic
GAAAGAATATTGCCCTGTTT+GGG 0.370990 2_2:-48391127 None:intergenic
TGGTGTATGCTTTGTCTGGC+TGG 0.371747 2_2:+48386801 Msa0254790:CDS
ATCACCAAGTGCACAAGTAC+TGG 0.382003 2_2:+48390075 Msa0254790:CDS
GTTACTGGGACAATGCTTGC+AGG 0.384169 2_2:+48386860 Msa0254790:CDS
AGGTTCGTTGGCAAGCTTCT+GGG 0.384533 2_2:+48389515 Msa0254790:CDS
AGAAATTAAACCATTGGTTA+AGG 0.384645 2_2:+48389999 Msa0254790:CDS
CAAAGGATGCAGCTGTGCTT+TGG 0.395728 2_2:+48387822 Msa0254790:CDS
CCATTCCTCCACAATATATT+GGG 0.396864 2_2:+48386277 Msa0254790:five_prime_UTR
AAACATAAAGGATCCCAAAC+AGG 0.405833 2_2:+48391114 Msa0254790:CDS
TGCTTCATGAGCACAAGTTT+GGG 0.407375 2_2:-48389761 None:intergenic
TGAACAACATTACTCTTTGT+TGG 0.409982 2_2:-48389279 None:intergenic
TCTTGAATATCGTAACTCTT+GGG 0.410113 2_2:-48391182 None:intergenic
GCTGGTGGCTTCTTAGTTGC+CGG 0.417944 2_2:-48391049 None:intergenic
ATTTCAACTATTCAGAATAC+AGG 0.418583 2_2:-48391312 None:intergenic
GAAGTGGTGTATGCTTTGTC+TGG 0.418622 2_2:+48386797 Msa0254790:CDS
TCTTCCTCGTTCATCAATCC+TGG 0.420011 2_2:-48390208 None:intergenic
CTCTTGAATATCGTAACTCT+TGG 0.421728 2_2:-48391183 None:intergenic
CCAGTAGTATTTGATGTAGC+TGG 0.432970 2_2:-48391067 None:intergenic
AGTAAAATCTGTAGTAGGCT+TGG 0.433215 2_2:+48389254 Msa0254790:CDS
CGATTTCGTGAATTAGGGAT+AGG 0.433982 2_2:-48386396 None:intergenic
ATATCTACCAAAGCTGTTAA+CGG 0.434286 2_2:+48390574 Msa0254790:CDS
TTGTGCTCATGAAGCAGTAC+TGG 0.437428 2_2:+48389768 Msa0254790:CDS
GAAAATCATCCAACAGGAAA+AGG 0.438789 2_2:+48389830 Msa0254790:CDS
TTATTTCTAAAGTTGCTTCA+AGG 0.440786 2_2:+48390736 Msa0254790:CDS
TCGGTGTTCGACATCGGAAT+CGG 0.441988 2_2:-48386370 None:intergenic
TATCTACCAAAGCTGTTAAC+GGG 0.445062 2_2:+48390575 Msa0254790:CDS
ACCAATGGTTTAATTTCTAC+CGG 0.453883 2_2:-48389994 None:intergenic
TGATGAGTTATCCTGCTAGA+AGG 0.457177 2_2:-48391211 None:intergenic
GTAAAATCTGTAGTAGGCTT+GGG 0.457685 2_2:+48389255 Msa0254790:CDS
GAGAATCACTGTATACTTCA+AGG 0.461603 2_2:-48390691 None:intergenic
ACCGGTAGAAATTAAACCAT+TGG 0.467547 2_2:+48389993 Msa0254790:CDS
CAAGAAAGCAGGAAACATAA+AGG 0.467823 2_2:+48391102 Msa0254790:CDS
CCTTAAGAAAATCATCCAAC+AGG 0.469186 2_2:+48389824 Msa0254790:CDS
ATAATTGCTTGAGAGACAAT+AGG 0.480190 2_2:+48387897 Msa0254790:CDS
AAAATTGGGGATATTTCCCC+AGG 0.482098 2_2:+48386234 Msa0254790:five_prime_UTR
CCACAAGTAAAATCTGTAGT+AGG 0.484176 2_2:+48389249 Msa0254790:CDS
CCAGCTACATCAAATACTAC+TGG 0.487443 2_2:+48391067 Msa0254790:CDS
CTCTGTTAATGGAGGTTCGT+TGG 0.494085 2_2:+48389503 Msa0254790:CDS
GAAGCACAGAAAGAGTTTGA+TGG 0.504099 2_2:+48387758 Msa0254790:intron
TGATGATTCTATTTATACCT+GGG 0.506559 2_2:-48386251 None:intergenic
TTCAGTAACTGAAGTAGTCT+GGG 0.507974 2_2:+48390471 Msa0254790:intron
TTTCCCAGTACTTGTGCACT+TGG 0.512191 2_2:-48390079 None:intergenic
AAAGTACAAGCTGATAAAAG+TGG 0.514890 2_2:+48389480 Msa0254790:CDS
TCTCTTCAGGTTCACCTAAG+AGG 0.514966 2_2:+48390169 Msa0254790:CDS
ATGATGATTCTATTTATACC+TGG 0.515222 2_2:-48386252 None:intergenic
TCCCAGTAACAAGCTTTACA+TGG 0.516719 2_2:-48386847 None:intergenic
AGCAATGGTACAGGAAATGC+AGG 0.517649 2_2:+48389387 Msa0254790:CDS
AACATGATTTCAAAACCTGC+AGG 0.524551 2_2:+48389588 Msa0254790:CDS
AGAGGAGGAAGCAAGAAAGC+AGG 0.527546 2_2:+48391091 Msa0254790:CDS
AGTAAAGTCTAGAACAGAAA+GGG 0.529134 2_2:+48391397 Msa0254790:three_prime_UTR
CCCAATATATTGTGGAGGAA+TGG 0.531774 2_2:-48386277 None:intergenic
GATTTCGTGAATTAGGGATA+GGG 0.531861 2_2:-48386395 None:intergenic
TGTACAAAGGAACGTGGTCG+TGG 0.532645 2_2:+48389200 Msa0254790:CDS
ACTCTCTCTTCCTTAACCAA+TGG 0.532731 2_2:-48390009 None:intergenic
AAGAATGAAAGCAATGGTAC+AGG 0.533258 2_2:+48389378 Msa0254790:CDS
TATTCAGAATACAGGTTACA+AGG 0.535754 2_2:-48391304 None:intergenic
ACAAGCTTTACATGGTAGCT+AGG 0.536190 2_2:-48386839 None:intergenic
AAGCACAGAAAGAGTTTGAT+GGG 0.538769 2_2:+48387759 Msa0254790:CDS
CAAAGGAACGTGGTCGTGGA+TGG 0.539310 2_2:+48389204 Msa0254790:CDS
GGTTCGTTGGCAAGCTTCTG+GGG 0.540265 2_2:+48389516 Msa0254790:CDS
TCATTGCATTTCCAGCGCAC+CGG 0.540287 2_2:+48391030 Msa0254790:intron
GGAGAAAAGTGATGAAGACC+AGG 0.540800 2_2:+48390190 Msa0254790:CDS
GACAGTTTACTAGGGACCTC+AGG 0.543644 2_2:-48389907 None:intergenic
GAAGTTGCAGAGCAGTGCTC+CGG 0.545178 2_2:+48390113 Msa0254790:CDS
TCCTCCACAATATATTGGGC+GGG 0.545260 2_2:+48386281 Msa0254790:five_prime_UTR
AGGGTTTCGGTGTTCGACAT+CGG 0.547592 2_2:-48386376 None:intergenic
AATTTCAGGTTTCATACAAG+TGG 0.549313 2_2:+48386567 Msa0254790:intron
ACATCAAATACTACTGGAAG+AGG 0.555136 2_2:+48391073 Msa0254790:CDS
AATCATCCAACAGGAAAAGG+AGG 0.557152 2_2:+48389833 Msa0254790:CDS
TAACTGAAGTAGTCTGGGAG+GGG 0.560193 2_2:+48390476 Msa0254790:CDS
CGTCTCAGATCAACTTCAAG+TGG 0.561762 2_2:+48386426 Msa0254790:CDS
CTTTAGATGACAGTTTACTA+GGG 0.562262 2_2:-48389915 None:intergenic
TACAGCTAAGAAAGCTGATA+CGG 0.563670 2_2:+48390531 Msa0254790:CDS
AAGTCTCTTCCCTTGCCCGC+AGG 0.565985 2_2:+48389450 Msa0254790:CDS
CTCAGGTGATGCTAAACTGA+TGG 0.568339 2_2:-48389890 None:intergenic
TAGCTTGCACACTATATACC+TGG 0.568621 2_2:-48387793 None:intergenic
TGATGGGAAATGCTCAGTCC+AGG 0.568705 2_2:+48387775 Msa0254790:CDS
CAAGAGACGATCCTTCTAGC+AGG 0.569971 2_2:+48391200 Msa0254790:three_prime_UTR
CAAGCCTTGCGCCGTGCCAG+AGG 0.572642 2_2:+48389557 Msa0254790:CDS
TCACCAAGTGCACAAGTACT+GGG 0.574444 2_2:+48390076 Msa0254790:CDS
AACTGAAGTAGTCTGGGAGG+GGG 0.575395 2_2:+48390477 Msa0254790:CDS
CTTGAATATCGTAACTCTTG+GGG 0.576849 2_2:-48391181 None:intergenic
TTGTTATGTACAATGAATTG+TGG 0.580756 2_2:+48391365 Msa0254790:three_prime_UTR
GTAGTATTTGATGTAGCTGG+TGG 0.582098 2_2:-48391064 None:intergenic
ACATGAGGATGGGTTGGAAG+TGG 0.582631 2_2:+48386781 Msa0254790:CDS
ATTGATGAACGAGGAAGAGA+AGG 0.588225 2_2:+48390213 Msa0254790:CDS
TTCCTCCACAATATATTGGG+CGG 0.588607 2_2:+48386280 Msa0254790:five_prime_UTR
TCCCGCCCAATATATTGTGG+AGG 0.591824 2_2:-48386282 None:intergenic
TAGTAAAGTCTAGAACAGAA+AGG 0.592934 2_2:+48391396 Msa0254790:three_prime_UTR
GTAACTGAAGTAGTCTGGGA+GGG 0.592954 2_2:+48390475 Msa0254790:intron
TACAATGAATTGTGGTGTGA+TGG 0.593465 2_2:+48391373 Msa0254790:three_prime_UTR
AACATAAAGGATCCCAAACA+GGG 0.599044 2_2:+48391115 Msa0254790:CDS
TGATCTCAAAACACAGAATG+TGG 0.600298 2_2:+48389344 Msa0254790:CDS
AGAATCACTGTATACTTCAA+GGG 0.600329 2_2:-48390690 None:intergenic
TGTGGAGTGGCAGAAACAGC+TGG 0.604207 2_2:-48389231 None:intergenic
TCAAATACTACTGGAAGAGG+AGG 0.613938 2_2:+48391076 Msa0254790:CDS
ACCATGTAAAGCTTGTTACT+GGG 0.613996 2_2:+48386846 Msa0254790:CDS
TTACTTCATTTGTGATTGTG+AGG 0.619182 2_2:+48391237 Msa0254790:three_prime_UTR
TGTGCTCATGAAGCAGTACT+GGG 0.619552 2_2:+48389769 Msa0254790:CDS
GATGTCAAGAATGAAAGCAA+TGG 0.629711 2_2:+48389372 Msa0254790:CDS
GATGATTCTATTTATACCTG+GGG 0.634763 2_2:-48386250 None:intergenic
ATCATCCAACAGGAAAAGGA+GGG 0.636768 2_2:+48389834 Msa0254790:CDS
TAGTTGAAATACCTTAAATG+TGG 0.640144 2_2:+48391325 Msa0254790:three_prime_UTR
TGTGCAAGCTAGTATTCCAA+AGG 0.641371 2_2:+48387805 Msa0254790:CDS
AAAAGTGGCTCTGTTAATGG+AGG 0.643109 2_2:+48389495 Msa0254790:CDS
AGAGCCAAAGAAAGATGACA+AGG 0.649680 2_2:+48390507 Msa0254790:CDS
AGTGATGACGATGATAATCA+AGG 0.657684 2_2:+48389796 Msa0254790:CDS
TGATACGGTTGCAAAGAAAG+CGG 0.688933 2_2:+48390546 Msa0254790:CDS
AGTAACTGAAGTAGTCTGGG+AGG 0.694022 2_2:+48390474 Msa0254790:intron
CATCAGTTTAGCATCACCTG+AGG 0.714142 2_2:+48389891 Msa0254790:CDS
ATCGGAAAAGAACGAAACGA+CGG 0.724908 2_2:-48386352 None:intergenic
AAGACCAGGATTGATGAACG+AGG 0.744480 2_2:+48390204 Msa0254790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAAATAAAAAAT+TGG + chr2_2:48386219-48386238 Msa0254790:five_prime_UTR 0.0%
!! AAATAAAAAAATAAAAAATT+GGG + chr2_2:48386220-48386239 Msa0254790:five_prime_UTR 0.0%
!! TTCAGTTAAAAAAAAAAAAT+TGG + chr2_2:48387626-48387645 Msa0254790:intron 10.0%
!!! TTTTTTTATGAATACTAAAT+TGG - chr2_2:48388515-48388534 None:intergenic 10.0%
!!! GAATATTAAATTGATTATTT+TGG - chr2_2:48388944-48388963 None:intergenic 10.0%
!! AAAAAATATATTCAATAAAC+CGG - chr2_2:48389626-48389645 None:intergenic 10.0%
!!! AAACAAATTTAGGATAAAAA+AGG - chr2_2:48386527-48386546 None:intergenic 15.0%
!!! ATGAAAATTTGTTTAATTTC+AGG + chr2_2:48386553-48386572 Msa0254790:intron 15.0%
!! TATAATAATTATAGTACTAG+CGG + chr2_2:48386902-48386921 Msa0254790:intron 15.0%
!!! TAATTTTTATCTCATAAACT+TGG + chr2_2:48387334-48387353 Msa0254790:intron 15.0%
!! ATATGAAAGAAACATTATTA+GGG - chr2_2:48388388-48388407 None:intergenic 15.0%
!!! GATATAATATGATATGATTT+TGG + chr2_2:48388671-48388690 Msa0254790:intron 15.0%
!! TCATGAAATCAAACAAATTT+AGG - chr2_2:48386537-48386556 None:intergenic 20.0%
!!! TTTTAGTTTTCTCAAATTGA+TGG + chr2_2:48386638-48386657 Msa0254790:intron 20.0%
!!! TTTAGTTTTCTCAAATTGAT+GGG + chr2_2:48386639-48386658 Msa0254790:intron 20.0%
!! TTGTTTATTTGTGAAATTGA+TGG + chr2_2:48386681-48386700 Msa0254790:intron 20.0%
!! TGTTTATTTGTGAAATTGAT+GGG + chr2_2:48386682-48386701 Msa0254790:intron 20.0%
!!! GTTGAAAATTTGTTATATGT+AGG + chr2_2:48386735-48386754 Msa0254790:intron 20.0%
!! AGGGAAAAAAATACAATTAA+TGG - chr2_2:48387261-48387280 None:intergenic 20.0%
!! GTATAGTCTATTAGAATATA+TGG + chr2_2:48387991-48388010 Msa0254790:intron 20.0%
!! ATCATATAGTTCATGAAAAA+TGG - chr2_2:48388300-48388319 None:intergenic 20.0%
!! CATATGAAAGAAACATTATT+AGG - chr2_2:48388389-48388408 None:intergenic 20.0%
!! TCTGATATTAAAATGTAGAA+TGG + chr2_2:48388649-48388668 Msa0254790:intron 20.0%
!! AATTTAATATTCCAATCTTC+TGG + chr2_2:48388952-48388971 Msa0254790:intron 20.0%
!!! AATTATGTCAGTAAAAGTAT+TGG - chr2_2:48389715-48389734 None:intergenic 20.0%
!! AGTTAAAACAATGCATTTAA+GGG - chr2_2:48390241-48390260 None:intergenic 20.0%
!! CATATTATAGTCATACATAA+CGG - chr2_2:48390302-48390321 None:intergenic 20.0%
!! ACTTATATATGCATGATTAT+CGG + chr2_2:48390368-48390387 Msa0254790:intron 20.0%
!!! AGTGAATGAAAATTTTGATA+AGG - chr2_2:48390399-48390418 None:intergenic 20.0%
!!! CATTTTAATATCATGAAATC+AGG - chr2_2:48390776-48390795 None:intergenic 20.0%
!!! AAGTTTTAAAATGTTATTGC+TGG - chr2_2:48390876-48390895 None:intergenic 20.0%
!!! TTTTCAAAAAGAAAGTATGA+AGG + chr2_2:48391152-48391171 Msa0254790:CDS 20.0%
!!! ATCTAGTTCTATTTTAGTTT+GGG + chr2_2:48391276-48391295 Msa0254790:three_prime_UTR 20.0%
! TGATGATTCTATTTATACCT+GGG - chr2_2:48386254-48386273 None:intergenic 25.0%
! ATGATGATTCTATTTATACC+TGG - chr2_2:48386255-48386274 None:intergenic 25.0%
!!! AGGCTTTGAAATTGAAAATT+GGG - chr2_2:48386507-48386526 None:intergenic 25.0%
!!! AAGGCTTTGAAATTGAAAAT+TGG - chr2_2:48386508-48386527 None:intergenic 25.0%
! TATCATCAAATGAAGCAAAA+AGG + chr2_2:48386609-48386628 Msa0254790:CDS 25.0%
!!! TCAAATTGATGGGTTTTTAT+AGG + chr2_2:48386649-48386668 Msa0254790:intron 25.0%
! TTGAAAACAAACATAACTGT+TGG + chr2_2:48387434-48387453 Msa0254790:intron 25.0%
! TGTACAGAAACTAAAGTAAT+TGG + chr2_2:48387476-48387495 Msa0254790:intron 25.0%
! ATAAGCATTTCTTCAAATAG+AGG - chr2_2:48387586-48387605 None:intergenic 25.0%
! TCTGCAAAAAAAATGAGAAT+CGG - chr2_2:48387740-48387759 None:intergenic 25.0%
!! GAACTGACAAATTTTCTTTT+TGG + chr2_2:48388128-48388147 Msa0254790:intron 25.0%
! TCTTTCATATGACCAAAAAA+TGG + chr2_2:48388398-48388417 Msa0254790:intron 25.0%
! TAAGAAAATAGCACAACAAA+GGG - chr2_2:48388604-48388623 None:intergenic 25.0%
! ATAAGAAAATAGCACAACAA+AGG - chr2_2:48388605-48388624 None:intergenic 25.0%
!! AGTTTCTTTTTACTGTTGTA+AGG + chr2_2:48388976-48388995 Msa0254790:intron 25.0%
! CTTCATAAATGAAGTTATTG+TGG - chr2_2:48389010-48389029 None:intergenic 25.0%
! AACTTCATTTATGAAGAATG+CGG + chr2_2:48389014-48389033 Msa0254790:intron 25.0%
!! TCTCTAATTCTTTTGTACAA+AGG + chr2_2:48389187-48389206 Msa0254790:CDS 25.0%
! ATATATTCAATAAACCGGAA+TGG - chr2_2:48389621-48389640 None:intergenic 25.0%
!!! TGACTTTTTGTCATTTTGTT+TGG - chr2_2:48389944-48389963 None:intergenic 25.0%
!!! TGCTTTGAATTTTGATTTAC+CGG + chr2_2:48389975-48389994 Msa0254790:CDS 25.0%
!! AGAAATTAAACCATTGGTTA+AGG + chr2_2:48389999-48390018 Msa0254790:CDS 25.0%
!! ATAACTGATAAATCTTTTGG+TGG - chr2_2:48390057-48390076 None:intergenic 25.0%
!! GTGATAACTGATAAATCTTT+TGG - chr2_2:48390060-48390079 None:intergenic 25.0%
!! TCCTTATTTACACAAATTTC+CGG - chr2_2:48390135-48390154 None:intergenic 25.0%
! AAATAAGGATAGTGCAAAAA+AGG + chr2_2:48390146-48390165 Msa0254790:CDS 25.0%
! GAGTTAAAACAATGCATTTA+AGG - chr2_2:48390242-48390261 None:intergenic 25.0%
!! TGAAATTTTCGTAAAGAACT+AGG - chr2_2:48390349-48390368 None:intergenic 25.0%
! CTTATATATGCATGATTATC+GGG + chr2_2:48390369-48390388 Msa0254790:intron 25.0%
! GAATTGAATGAATGAAATTC+TGG + chr2_2:48390618-48390637 Msa0254790:intron 25.0%
!!! TTATTTCTAAAGTTGCTTCA+AGG + chr2_2:48390736-48390755 Msa0254790:CDS 25.0%
!! GTACTTTCAATCTGATTTTA+TGG + chr2_2:48390919-48390938 Msa0254790:intron 25.0%
!!! GATCTAGTTCTATTTTAGTT+TGG + chr2_2:48391275-48391294 Msa0254790:three_prime_UTR 25.0%
! ATTTCAACTATTCAGAATAC+AGG - chr2_2:48391315-48391334 None:intergenic 25.0%
! TAGTTGAAATACCTTAAATG+TGG + chr2_2:48391325-48391344 Msa0254790:three_prime_UTR 25.0%
! TTGTTATGTACAATGAATTG+TGG + chr2_2:48391365-48391384 Msa0254790:three_prime_UTR 25.0%
GATGATTCTATTTATACCTG+GGG - chr2_2:48386253-48386272 None:intergenic 30.0%
AGATTCGATTTCGTGAATTA+GGG - chr2_2:48386404-48386423 None:intergenic 30.0%
GGAAATTGAAGAGATTTGAT+TGG - chr2_2:48386469-48386488 None:intergenic 30.0%
!! GCTTTGAAATTGAAAATTGG+GGG - chr2_2:48386505-48386524 None:intergenic 30.0%
!! GGCTTTGAAATTGAAAATTG+GGG - chr2_2:48386506-48386525 None:intergenic 30.0%
!! AATTTCAGGTTTCATACAAG+TGG + chr2_2:48386567-48386586 Msa0254790:intron 30.0%
ATCAAATGAAGCAAAAAGGT+AGG + chr2_2:48386613-48386632 Msa0254790:intron 30.0%
TCAAATGAAGCAAAAAGGTA+GGG + chr2_2:48386614-48386633 Msa0254790:intron 30.0%
!! GGAATTTGTTGAAAAACATG+AGG + chr2_2:48386766-48386785 Msa0254790:CDS 30.0%
TTTGTTGAAAAACATGAGGA+TGG + chr2_2:48386770-48386789 Msa0254790:CDS 30.0%
TTGTTGAAAAACATGAGGAT+GGG + chr2_2:48386771-48386790 Msa0254790:CDS 30.0%
! GATAATTTGCGTAAATGTCT+CGG + chr2_2:48386994-48387013 Msa0254790:intron 30.0%
! CAGTAAAGTATTAAGCTGTA+GGG - chr2_2:48387280-48387299 None:intergenic 30.0%
! ACAGTAAAGTATTAAGCTGT+AGG - chr2_2:48387281-48387300 None:intergenic 30.0%
!! GTGTTTTCTTCATTGTTTTG+TGG + chr2_2:48387358-48387377 Msa0254790:intron 30.0%
TCTGTACAAAAAGATGCTAA+AGG - chr2_2:48387464-48387483 None:intergenic 30.0%
TTCATGTCATGGTTTCATAT+AGG - chr2_2:48387516-48387535 None:intergenic 30.0%
ATTGACCATACCAAAATGAT+GGG - chr2_2:48387559-48387578 None:intergenic 30.0%
AATTGACCATACCAAAATGA+TGG - chr2_2:48387560-48387579 None:intergenic 30.0%
GAAAAAAATTCTTGTCACTC+TGG + chr2_2:48387675-48387694 Msa0254790:intron 30.0%
CTCAAGCAATTATCATCTTT+GGG - chr2_2:48387890-48387909 None:intergenic 30.0%
TCTCAAGCAATTATCATCTT+TGG - chr2_2:48387891-48387910 None:intergenic 30.0%
ATAATTGCTTGAGAGACAAT+AGG + chr2_2:48387897-48387916 Msa0254790:CDS 30.0%
!! ACAAATATCATGACTTGCTT+GGG - chr2_2:48388034-48388053 None:intergenic 30.0%
AAGCAAGTCATGATATTTGT+GGG + chr2_2:48388034-48388053 Msa0254790:intron 30.0%
!!! ACAAGAGACCAGAAATTTTT+TGG + chr2_2:48388199-48388218 Msa0254790:intron 30.0%
!!! CAAGAGACCAGAAATTTTTT+GGG + chr2_2:48388200-48388219 Msa0254790:intron 30.0%
AACGTTACCCAAAAAATTTC+TGG - chr2_2:48388210-48388229 None:intergenic 30.0%
TTTCTGTGAATTGCTTTAGT+AGG + chr2_2:48388228-48388247 Msa0254790:intron 30.0%
! TAATAGTGATAGTTTGTCAC+TGG - chr2_2:48388339-48388358 None:intergenic 30.0%
CTATTACATGTTCCAAAACT+TGG + chr2_2:48388353-48388372 Msa0254790:intron 30.0%
! AAGAATTTTCTTTTACCGCT+TGG + chr2_2:48389054-48389073 Msa0254790:intron 30.0%
CTGTCTTATATGTGTGTTTA+CGG + chr2_2:48389115-48389134 Msa0254790:intron 30.0%
!! AGCATATTTTTCAGATTCTG+TGG + chr2_2:48389162-48389181 Msa0254790:intron 30.0%
!! GCATATTTTTCAGATTCTGT+GGG + chr2_2:48389163-48389182 Msa0254790:intron 30.0%
TGAACAACATTACTCTTTGT+TGG - chr2_2:48389282-48389301 None:intergenic 30.0%
! GAATTGTGTGCTATGTTTTT+CGG - chr2_2:48389312-48389331 None:intergenic 30.0%
! TTGTACTTTCTTTTTACCTG+CGG - chr2_2:48389469-48389488 None:intergenic 30.0%
AAAGTACAAGCTGATAAAAG+TGG + chr2_2:48389480-48389499 Msa0254790:CDS 30.0%
! ATCATGTTACTATTTTCCTC+TGG - chr2_2:48389576-48389595 None:intergenic 30.0%
TATAACTGTAATCATCGAGA+AGG - chr2_2:48389664-48389683 None:intergenic 30.0%
CTTTAGATGACAGTTTACTA+GGG - chr2_2:48389918-48389937 None:intergenic 30.0%
TCTTTAGATGACAGTTTACT+AGG - chr2_2:48389919-48389938 None:intergenic 30.0%
! ACCAATGGTTTAATTTCTAC+CGG - chr2_2:48389997-48390016 None:intergenic 30.0%
TCCGGAAATTTGTGTAAATA+AGG + chr2_2:48390131-48390150 Msa0254790:CDS 30.0%
!!! AATGCATTGTTTTAACTCAC+CGG + chr2_2:48390244-48390263 Msa0254790:intron 30.0%
ATAATATGGAAGAAAGAACC+CGG - chr2_2:48390266-48390285 None:intergenic 30.0%
GTGACTTCTACACTATAATA+TGG - chr2_2:48390280-48390299 None:intergenic 30.0%
ATATCTACCAAAGCTGTTAA+CGG + chr2_2:48390574-48390593 Msa0254790:CDS 30.0%
AGAATCACTGTATACTTCAA+GGG - chr2_2:48390693-48390712 None:intergenic 30.0%
AGTATACAGTGATTCTCATT+AGG + chr2_2:48390697-48390716 Msa0254790:CDS 30.0%
TATGAGCAATTCATGAGTAT+AGG + chr2_2:48390809-48390828 Msa0254790:intron 30.0%
! AATCAGATTGAAAGTACAGT+GGG - chr2_2:48390916-48390935 None:intergenic 30.0%
! AAATCAGATTGAAAGTACAG+TGG - chr2_2:48390917-48390936 None:intergenic 30.0%
TCTTGAATATCGTAACTCTT+GGG - chr2_2:48391185-48391204 None:intergenic 30.0%
TTACTTCATTTGTGATTGTG+AGG + chr2_2:48391237-48391256 Msa0254790:three_prime_UTR 30.0%
TATTCAGAATACAGGTTACA+AGG - chr2_2:48391307-48391326 None:intergenic 30.0%
! TAGTAAAGTCTAGAACAGAA+AGG + chr2_2:48391396-48391415 Msa0254790:three_prime_UTR 30.0%
! AGTAAAGTCTAGAACAGAAA+GGG + chr2_2:48391397-48391416 Msa0254790:three_prime_UTR 30.0%
TCCATTCCTCCACAATATAT+TGG + chr2_2:48386276-48386295 Msa0254790:five_prime_UTR 35.0%
CCATTCCTCCACAATATATT+GGG + chr2_2:48386277-48386296 Msa0254790:five_prime_UTR 35.0%
GATTTCGTGAATTAGGGATA+GGG - chr2_2:48386398-48386417 None:intergenic 35.0%
GAGATTCGATTTCGTGAATT+AGG - chr2_2:48386405-48386424 None:intergenic 35.0%
TGTTATATGTAGGTTGCTTC+AGG + chr2_2:48386745-48386764 Msa0254790:intron 35.0%
!! TACCATGTAAAGCTTGTTAC+TGG + chr2_2:48386845-48386864 Msa0254790:CDS 35.0%
!! ACCATGTAAAGCTTGTTACT+GGG + chr2_2:48386846-48386865 Msa0254790:CDS 35.0%
! CTTCAAATTTAAGACATGCC+CGG - chr2_2:48387029-48387048 None:intergenic 35.0%
! TTGAAGTGTCAGTGCTATAT+AGG + chr2_2:48387043-48387062 Msa0254790:intron 35.0%
CATTAGAGATGCCTTCAATT+AGG + chr2_2:48387193-48387212 Msa0254790:intron 35.0%
TGAGGTTATGCTTGTTTGTT+TGG + chr2_2:48387385-48387404 Msa0254790:intron 35.0%
AACCATGACATGAACCAATT+TGG + chr2_2:48387522-48387541 Msa0254790:intron 35.0%
! GTTTTTCTGACCCATCATTT+TGG + chr2_2:48387546-48387565 Msa0254790:intron 35.0%
CCTACTTCCTAATGTTTGTA+AGG - chr2_2:48387705-48387724 None:intergenic 35.0%
CCTTACAAACATTAGGAAGT+AGG + chr2_2:48387702-48387721 Msa0254790:intron 35.0%
AAGCACAGAAAGAGTTTGAT+GGG + chr2_2:48387759-48387778 Msa0254790:CDS 35.0%
!! AAATATCATGACTTGCTTGG+GGG - chr2_2:48388032-48388051 None:intergenic 35.0%
!! CAAATATCATGACTTGCTTG+GGG - chr2_2:48388033-48388052 None:intergenic 35.0%
!! CACAAATATCATGACTTGCT+TGG - chr2_2:48388035-48388054 None:intergenic 35.0%
CAAGCAAGTCATGATATTTG+TGG + chr2_2:48388033-48388052 Msa0254790:intron 35.0%
ATTTGTCAGTTCAGTATGAG+TGG - chr2_2:48388120-48388139 None:intergenic 35.0%
!!! TTTTTGGTTCTCTTTGCCAA+TGG + chr2_2:48388144-48388163 Msa0254790:intron 35.0%
ATTAGTGTTGTAATCGCCAT+TGG - chr2_2:48388163-48388182 None:intergenic 35.0%
ACCAAAAAATGGTTCAGTGT+CGG + chr2_2:48388409-48388428 Msa0254790:intron 35.0%
CATATTCCAAAAGCAGAAGA+TGG - chr2_2:48388466-48388485 None:intergenic 35.0%
!! ATCTTTCCATTGCTTTTGTG+TGG + chr2_2:48388547-48388566 Msa0254790:intron 35.0%
!! TCTTTCCATTGCTTTTGTGT+GGG + chr2_2:48388548-48388567 Msa0254790:intron 35.0%
AATATGTGATGCATATCTCC+AGG + chr2_2:48388735-48388754 Msa0254790:intron 35.0%
!! AGAAAGCTGCTTTGAAAAGT+AGG + chr2_2:48388791-48388810 Msa0254790:intron 35.0%
!! GAAAGCTGCTTTGAAAAGTA+GGG + chr2_2:48388792-48388811 Msa0254790:intron 35.0%
!! AAAGCTGCTTTGAAAAGTAG+GGG + chr2_2:48388793-48388812 Msa0254790:intron 35.0%
!! CACTGATTCAGAAGCTTTAT+TGG - chr2_2:48388860-48388879 None:intergenic 35.0%
AAAAGAAACTGCCAGAAGAT+TGG - chr2_2:48388966-48388985 None:intergenic 35.0%
! TTCTTTTGTACAAAGGAACG+TGG + chr2_2:48389194-48389213 Msa0254790:CDS 35.0%
! TACAGATTTTACTTGTGGAG+TGG - chr2_2:48389247-48389266 None:intergenic 35.0%
! CCTACTACAGATTTTACTTG+TGG - chr2_2:48389252-48389271 None:intergenic 35.0%
CCACAAGTAAAATCTGTAGT+AGG + chr2_2:48389249-48389268 Msa0254790:CDS 35.0%
AGTAAAATCTGTAGTAGGCT+TGG + chr2_2:48389254-48389273 Msa0254790:CDS 35.0%
GTAAAATCTGTAGTAGGCTT+GGG + chr2_2:48389255-48389274 Msa0254790:CDS 35.0%
TGATCTCAAAACACAGAATG+TGG + chr2_2:48389344-48389363 Msa0254790:CDS 35.0%
GATGTCAAGAATGAAAGCAA+TGG + chr2_2:48389372-48389391 Msa0254790:CDS 35.0%
AAGAATGAAAGCAATGGTAC+AGG + chr2_2:48389378-48389397 Msa0254790:CDS 35.0%
! GACTTTTCTTTCTCTGCAAT+AGG - chr2_2:48389435-48389454 None:intergenic 35.0%
! TGTACTTTCTTTTTACCTGC+GGG - chr2_2:48389468-48389487 None:intergenic 35.0%
! GATAAAAGTGGCTCTGTTAA+TGG + chr2_2:48389492-48389511 Msa0254790:CDS 35.0%
AACATGATTTCAAAACCTGC+AGG + chr2_2:48389588-48389607 Msa0254790:CDS 35.0%
! AGTGATGACGATGATAATCA+AGG + chr2_2:48389796-48389815 Msa0254790:CDS 35.0%
! CCTGTTGGATGATTTTCTTA+AGG - chr2_2:48389827-48389846 None:intergenic 35.0%
CCTTAAGAAAATCATCCAAC+AGG + chr2_2:48389824-48389843 Msa0254790:CDS 35.0%
GAAAATCATCCAACAGGAAA+AGG + chr2_2:48389830-48389849 Msa0254790:CDS 35.0%
ACCGGTAGAAATTAAACCAT+TGG + chr2_2:48389993-48390012 Msa0254790:CDS 35.0%
!! CTGATAAATCTTTTGGTGGT+TGG - chr2_2:48390053-48390072 None:intergenic 35.0%
!! TTCATCACTTTTCTCCTCTT+AGG - chr2_2:48390186-48390205 None:intergenic 35.0%
!!! ATGCATTGTTTTAACTCACC+GGG + chr2_2:48390245-48390264 Msa0254790:intron 35.0%
TTCAGTAACTGAAGTAGTCT+GGG + chr2_2:48390471-48390490 Msa0254790:intron 35.0%
GTATCCTTGTCATCTTTCTT+TGG - chr2_2:48390514-48390533 None:intergenic 35.0%
TACAGCTAAGAAAGCTGATA+CGG + chr2_2:48390531-48390550 Msa0254790:CDS 35.0%
TATCTACCAAAGCTGTTAAC+GGG + chr2_2:48390575-48390594 Msa0254790:CDS 35.0%
GGAAGCAATCAATACTTCAA+AGG + chr2_2:48390639-48390658 Msa0254790:intron 35.0%
GAGAATCACTGTATACTTCA+AGG - chr2_2:48390694-48390713 None:intergenic 35.0%
AAATGTTATTGCTGGCCAAA+GGG - chr2_2:48390868-48390887 None:intergenic 35.0%
AAAATGTTATTGCTGGCCAA+AGG - chr2_2:48390869-48390888 None:intergenic 35.0%
! ATCAGATTGAAAGTACAGTG+GGG - chr2_2:48390915-48390934 None:intergenic 35.0%
ACATCAAATACTACTGGAAG+AGG + chr2_2:48391073-48391092 Msa0254790:CDS 35.0%
CAAGAAAGCAGGAAACATAA+AGG + chr2_2:48391102-48391121 Msa0254790:CDS 35.0%
AAACATAAAGGATCCCAAAC+AGG + chr2_2:48391114-48391133 Msa0254790:CDS 35.0%
AACATAAAGGATCCCAAACA+GGG + chr2_2:48391115-48391134 Msa0254790:CDS 35.0%
GAAAGAATATTGCCCTGTTT+GGG - chr2_2:48391130-48391149 None:intergenic 35.0%
TGAAAGAATATTGCCCTGTT+TGG - chr2_2:48391131-48391150 None:intergenic 35.0%
CTTGAATATCGTAACTCTTG+GGG - chr2_2:48391184-48391203 None:intergenic 35.0%
CTCTTGAATATCGTAACTCT+TGG - chr2_2:48391186-48391205 None:intergenic 35.0%
AGAAATACACGCCACATTTA+AGG - chr2_2:48391339-48391358 None:intergenic 35.0%
TACAATGAATTGTGGTGTGA+TGG + chr2_2:48391373-48391392 Msa0254790:three_prime_UTR 35.0%
AAAATTGGGGATATTTCCCC+AGG + chr2_2:48386234-48386253 Msa0254790:five_prime_UTR 40.0%
CCCAATATATTGTGGAGGAA+TGG - chr2_2:48386280-48386299 None:intergenic 40.0%
TTCCTCCACAATATATTGGG+CGG + chr2_2:48386280-48386299 Msa0254790:five_prime_UTR 40.0%
! TTTTCCCGCCCAATATATTG+TGG - chr2_2:48386288-48386307 None:intergenic 40.0%
AGAACGAAACGACGGTAAAA+AGG - chr2_2:48386347-48386366 None:intergenic 40.0%
ATCGGAAAAGAACGAAACGA+CGG - chr2_2:48386355-48386374 None:intergenic 40.0%
GTGAATTAGGGATAGGGTTT+CGG - chr2_2:48386392-48386411 None:intergenic 40.0%
CGATTTCGTGAATTAGGGAT+AGG - chr2_2:48386399-48386418 None:intergenic 40.0%
AATTGGGGGAAGAGAAGTAA+GGG - chr2_2:48386491-48386510 None:intergenic 40.0%
AAATTGGGGGAAGAGAAGTA+AGG - chr2_2:48386492-48386511 None:intergenic 40.0%
TGAAAAACATGAGGATGGGT+TGG + chr2_2:48386775-48386794 Msa0254790:CDS 40.0%
ACAAGCTTTACATGGTAGCT+AGG - chr2_2:48386842-48386861 None:intergenic 40.0%
TCCCAGTAACAAGCTTTACA+TGG - chr2_2:48386850-48386869 None:intergenic 40.0%
TGAACCATGAAGGTTAGACA+CGG + chr2_2:48386931-48386950 Msa0254790:intron 40.0%
TGTCAGTGCTATATAGGTAC+CGG + chr2_2:48387049-48387068 Msa0254790:intron 40.0%
! ATGCCTTCAATTAGGAGTGT+TGG + chr2_2:48387201-48387220 Msa0254790:intron 40.0%
!! TCATTGTTTTGTGGCTGTTG+AGG + chr2_2:48387367-48387386 Msa0254790:intron 40.0%
! TGGTTTGAGTGTCAAGCTTT+TGG + chr2_2:48387405-48387424 Msa0254790:intron 40.0%
! GGTTTGAGTGTCAAGCTTTT+GGG + chr2_2:48387406-48387425 Msa0254790:intron 40.0%
! CACCAAATTGGTTCATGTCA+TGG - chr2_2:48387527-48387546 None:intergenic 40.0%
GGGTCAGAAAAACACCAAAT+TGG - chr2_2:48387539-48387558 None:intergenic 40.0%
!! TCTGACCCATCATTTTGGTA+TGG + chr2_2:48387551-48387570 Msa0254790:intron 40.0%
! TGGAGTGCCTTACAAACATT+AGG + chr2_2:48387695-48387714 Msa0254790:intron 40.0%
GAAGCACAGAAAGAGTTTGA+TGG + chr2_2:48387758-48387777 Msa0254790:intron 40.0%
! TAGCTTGCACACTATATACC+TGG - chr2_2:48387796-48387815 None:intergenic 40.0%
TGTGCAAGCTAGTATTCCAA+AGG + chr2_2:48387805-48387824 Msa0254790:CDS 40.0%
! GGGAGAGAAAAACCAAGTTT+TGG - chr2_2:48388368-48388387 None:intergenic 40.0%
!!! ACCGACACTGAACCATTTTT+TGG - chr2_2:48388413-48388432 None:intergenic 40.0%
AAGATGGAAGGATCTTGGTT+TGG - chr2_2:48388450-48388469 None:intergenic 40.0%
! ATCCTTCCATCTTCTGCTTT+TGG + chr2_2:48388457-48388476 Msa0254790:intron 40.0%
TTCCAAAAGCAGAAGATGGA+AGG - chr2_2:48388462-48388481 None:intergenic 40.0%
TGGAATATGCTCTCCACTAT+TGG + chr2_2:48388477-48388496 Msa0254790:intron 40.0%
TGAAACCCACACAAAAGCAA+TGG - chr2_2:48388556-48388575 None:intergenic 40.0%
!! ATTGCTTTTGTGTGGGTTTC+AGG + chr2_2:48388555-48388574 Msa0254790:intron 40.0%
TGTTGTGCAATTACATGTCC+TGG - chr2_2:48388756-48388775 None:intergenic 40.0%
GTTTACGGTTTCCTAATTCC+TGG + chr2_2:48389130-48389149 Msa0254790:intron 40.0%
AAATATGCTAGTTAGCCACC+AGG - chr2_2:48389151-48389170 None:intergenic 40.0%
!! TTGTGTGCTATGTTTTTCGG+AGG - chr2_2:48389309-48389328 None:intergenic 40.0%
! AAAAGTGGCTCTGTTAATGG+AGG + chr2_2:48389495-48389514 Msa0254790:CDS 40.0%
! GTTACTATTTTCCTCTGGCA+CGG - chr2_2:48389571-48389590 None:intergenic 40.0%
TGATTTCAAAACCTGCAGGT+TGG + chr2_2:48389592-48389611 Msa0254790:intron 40.0%
TGCTTCATGAGCACAAGTTT+GGG - chr2_2:48389764-48389783 None:intergenic 40.0%
AATCATCCAACAGGAAAAGG+AGG + chr2_2:48389833-48389852 Msa0254790:CDS 40.0%
ATCATCCAACAGGAAAAGGA+GGG + chr2_2:48389834-48389853 Msa0254790:CDS 40.0%
ACTCTCTCTTCCTTAACCAA+TGG - chr2_2:48390012-48390031 None:intergenic 40.0%
AGTGCAAAAAAGGTCTCTTC+AGG + chr2_2:48390156-48390175 Msa0254790:CDS 40.0%
ATTGATGAACGAGGAAGAGA+AGG + chr2_2:48390213-48390232 Msa0254790:CDS 40.0%
CTTCAGTAACTGAAGTAGTC+TGG + chr2_2:48390470-48390489 Msa0254790:intron 40.0%
AGAGCCAAAGAAAGATGACA+AGG + chr2_2:48390507-48390526 Msa0254790:CDS 40.0%
TGATACGGTTGCAAAGAAAG+CGG + chr2_2:48390546-48390565 Msa0254790:CDS 40.0%
AATGTTATTGCTGGCCAAAG+GGG - chr2_2:48390867-48390886 None:intergenic 40.0%
GTAGTATTTGATGTAGCTGG+TGG - chr2_2:48391067-48391086 None:intergenic 40.0%
CCAGTAGTATTTGATGTAGC+TGG - chr2_2:48391070-48391089 None:intergenic 40.0%
CCAGCTACATCAAATACTAC+TGG + chr2_2:48391067-48391086 Msa0254790:CDS 40.0%
TCAAATACTACTGGAAGAGG+AGG + chr2_2:48391076-48391095 Msa0254790:CDS 40.0%
TGATGAGTTATCCTGCTAGA+AGG - chr2_2:48391214-48391233 None:intergenic 40.0%
TCCTCCACAATATATTGGGC+GGG + chr2_2:48386281-48386300 Msa0254790:five_prime_UTR 45.0%
!! ACGGTAAAAAGGCGCGTTTT+GGG - chr2_2:48386336-48386355 None:intergenic 45.0%
CGTCTCAGATCAACTTCAAG+TGG + chr2_2:48386426-48386445 Msa0254790:CDS 45.0%
ATTGGGGGAAGAGAAGTAAG+GGG - chr2_2:48386490-48386509 None:intergenic 45.0%
GAAGTGGTGTATGCTTTGTC+TGG + chr2_2:48386797-48386816 Msa0254790:CDS 45.0%
!! AATGTCTCGGTGTCAGATAC+CGG + chr2_2:48387007-48387026 Msa0254790:intron 45.0%
GCACCAACACTCCTAATTGA+AGG - chr2_2:48387207-48387226 None:intergenic 45.0%
AGCAGAAGATGGAAGGATCT+TGG - chr2_2:48388455-48388474 None:intergenic 45.0%
GCTCTCCACTATTGGAATGA+TGG + chr2_2:48388485-48388504 Msa0254790:intron 45.0%
CACAACAAAGGGTGAGAAAG+AGG - chr2_2:48388593-48388612 None:intergenic 45.0%
! GTTTAAGACTGAGCACCAAG+CGG - chr2_2:48389072-48389091 None:intergenic 45.0%
TACGGTTTCCTAATTCCTGG+TGG + chr2_2:48389133-48389152 Msa0254790:intron 45.0%
CTAGTTAGCCACCAGGAATT+AGG - chr2_2:48389144-48389163 None:intergenic 45.0%
!! GTGCTATGTTTTTCGGAGGT+TGG - chr2_2:48389305-48389324 None:intergenic 45.0%
AGCAATGGTACAGGAAATGC+AGG + chr2_2:48389387-48389406 Msa0254790:CDS 45.0%
! TTCTTTTTACCTGCGGGCAA+GGG - chr2_2:48389462-48389481 None:intergenic 45.0%
! TTTCTTTTTACCTGCGGGCA+AGG - chr2_2:48389463-48389482 None:intergenic 45.0%
CTCTGTTAATGGAGGTTCGT+TGG + chr2_2:48389503-48389522 Msa0254790:CDS 45.0%
CTGCTTCATGAGCACAAGTT+TGG - chr2_2:48389765-48389784 None:intergenic 45.0%
TTGTGCTCATGAAGCAGTAC+TGG + chr2_2:48389768-48389787 Msa0254790:CDS 45.0%
TGTGCTCATGAAGCAGTACT+GGG + chr2_2:48389769-48389788 Msa0254790:CDS 45.0%
CTCAGGTGATGCTAAACTGA+TGG - chr2_2:48389893-48389912 None:intergenic 45.0%
CATCAGTTTAGCATCACCTG+AGG + chr2_2:48389891-48389910 Msa0254790:CDS 45.0%
ATCACCAAGTGCACAAGTAC+TGG + chr2_2:48390075-48390094 Msa0254790:CDS 45.0%
TCACCAAGTGCACAAGTACT+GGG + chr2_2:48390076-48390095 Msa0254790:CDS 45.0%
TTTCCCAGTACTTGTGCACT+TGG - chr2_2:48390082-48390101 None:intergenic 45.0%
CTCTGCAACTTCTCAGTAGA+TGG - chr2_2:48390105-48390124 None:intergenic 45.0%
! TCTCTTCAGGTTCACCTAAG+AGG + chr2_2:48390169-48390188 Msa0254790:CDS 45.0%
GGAGAAAAGTGATGAAGACC+AGG + chr2_2:48390190-48390209 Msa0254790:CDS 45.0%
AAGACCAGGATTGATGAACG+AGG + chr2_2:48390204-48390223 Msa0254790:CDS 45.0%
TCTTCCTCGTTCATCAATCC+TGG - chr2_2:48390211-48390230 None:intergenic 45.0%
AGTAACTGAAGTAGTCTGGG+AGG + chr2_2:48390474-48390493 Msa0254790:intron 45.0%
GTAACTGAAGTAGTCTGGGA+GGG + chr2_2:48390475-48390494 Msa0254790:intron 45.0%
TAACTGAAGTAGTCTGGGAG+GGG + chr2_2:48390476-48390495 Msa0254790:CDS 45.0%
CACTAACCCGTTAACAGCTT+TGG - chr2_2:48390584-48390603 None:intergenic 45.0%
GCATGACATGACTCCTTGTT+AGG + chr2_2:48390664-48390683 Msa0254790:intron 45.0%
ACTTCAAGGGACACCTAACA+AGG - chr2_2:48390680-48390699 None:intergenic 45.0%
TACTAGCTGATTGTCCCCTT+TGG + chr2_2:48390850-48390869 Msa0254790:intron 45.0%
!! AATAAAAAAATAAAAAATTG+GGG + chr2_2:48386221-48386240 Msa0254790:five_prime_UTR 5.0%
!! TAATTATTGAATATATATTA+CGG - chr2_2:48388268-48388287 None:intergenic 5.0%
TCCCGCCCAATATATTGTGG+AGG - chr2_2:48386285-48386304 None:intergenic 50.0%
!! GACGGTAAAAAGGCGCGTTT+TGG - chr2_2:48386337-48386356 None:intergenic 50.0%
! TCGGTGTTCGACATCGGAAT+CGG - chr2_2:48386373-48386392 None:intergenic 50.0%
!! AGGGTTTCGGTGTTCGACAT+CGG - chr2_2:48386379-48386398 None:intergenic 50.0%
!! ACATGAGGATGGGTTGGAAG+TGG + chr2_2:48386781-48386800 Msa0254790:CDS 50.0%
TGGTGTATGCTTTGTCTGGC+TGG + chr2_2:48386801-48386820 Msa0254790:CDS 50.0%
GTTACTGGGACAATGCTTGC+AGG + chr2_2:48386860-48386879 Msa0254790:CDS 50.0%
GCGGCGATTATGAACCATGA+AGG + chr2_2:48386921-48386940 Msa0254790:intron 50.0%
GTGTCCGTGTCTAACCTTCA+TGG - chr2_2:48386938-48386957 None:intergenic 50.0%
!! ATGTCTCGGTGTCAGATACC+GGG + chr2_2:48387008-48387027 Msa0254790:intron 50.0%
! GTGTCGACATCTGACATGTC+CGG - chr2_2:48387071-48387090 None:intergenic 50.0%
!! GAGTGTCAAGCTTTTGGGTC+AGG + chr2_2:48387411-48387430 Msa0254790:intron 50.0%
TGATGGGAAATGCTCAGTCC+AGG + chr2_2:48387775-48387794 Msa0254790:CDS 50.0%
CAAAGCACAGCTGCATCCTT+TGG - chr2_2:48387824-48387843 None:intergenic 50.0%
CAAAGGATGCAGCTGTGCTT+TGG + chr2_2:48387822-48387841 Msa0254790:CDS 50.0%
ATGAGTGGCAGCAAATCTGC+TGG - chr2_2:48388105-48388124 None:intergenic 50.0%
GCGCTCCATCATTCCAATAG+TGG - chr2_2:48388493-48388512 None:intergenic 50.0%
!! TGTGTGGGTTTCAGGTTTGC+TGG + chr2_2:48388563-48388582 Msa0254790:intron 50.0%
TGTACAAAGGAACGTGGTCG+TGG + chr2_2:48389200-48389219 Msa0254790:CDS 50.0%
AGGTTCGTTGGCAAGCTTCT+GGG + chr2_2:48389515-48389534 Msa0254790:CDS 50.0%
! CAAGGCTTGGGTTTTGCAGA+TGG - chr2_2:48389546-48389565 None:intergenic 50.0%
!! CTGCAGGTTGGTTTCCATTC+CGG + chr2_2:48389604-48389623 Msa0254790:intron 50.0%
! GACAACCCTCCTTTTCCTGT+TGG - chr2_2:48389842-48389861 None:intergenic 50.0%
GACAGTTTACTAGGGACCTC+AGG - chr2_2:48389910-48389929 None:intergenic 50.0%
AACTGAAGTAGTCTGGGAGG+GGG + chr2_2:48390477-48390496 Msa0254790:CDS 50.0%
TCATTGCATTTCCAGCGCAC+CGG + chr2_2:48391030-48391049 Msa0254790:intron 50.0%
AGAGGAGGAAGCAAGAAAGC+AGG + chr2_2:48391091-48391110 Msa0254790:CDS 50.0%
CAAGAGACGATCCTTCTAGC+AGG + chr2_2:48391200-48391219 Msa0254790:three_prime_UTR 50.0%
CAAAGGAACGTGGTCGTGGA+TGG + chr2_2:48389204-48389223 Msa0254790:CDS 55.0%
TGTGGAGTGGCAGAAACAGC+TGG - chr2_2:48389234-48389253 None:intergenic 55.0%
GAGGTTCGTTGGCAAGCTTC+TGG + chr2_2:48389514-48389533 Msa0254790:CDS 55.0%
GGTTCGTTGGCAAGCTTCTG+GGG + chr2_2:48389516-48389535 Msa0254790:CDS 55.0%
CGGAATGGAAACCAACCTGC+AGG - chr2_2:48389606-48389625 None:intergenic 55.0%
GAAGTTGCAGAGCAGTGCTC+CGG + chr2_2:48390113-48390132 Msa0254790:CDS 55.0%
GCTGGTGGCTTCTTAGTTGC+CGG - chr2_2:48391052-48391071 None:intergenic 55.0%
AAGTCTCTTCCCTTGCCCGC+AGG + chr2_2:48389450-48389469 Msa0254790:CDS 60.0%
! TTTTCCTCTGGCACGGCGCA+AGG - chr2_2:48389564-48389583 None:intergenic 60.0%
TGAAGTAGTCTGGGAGGGGG+AGG + chr2_2:48390480-48390499 Msa0254790:CDS 60.0%
CTTCTTAGTTGCCGGTGCGC+TGG - chr2_2:48391044-48391063 None:intergenic 60.0%
TCTGGCACGGCGCAAGGCTT+GGG - chr2_2:48389558-48389577 None:intergenic 65.0%
CTCTGGCACGGCGCAAGGCT+TGG - chr2_2:48389559-48389578 None:intergenic 70.0%
CAAGCCTTGCGCCGTGCCAG+AGG + chr2_2:48389557-48389576 Msa0254790:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 48386211 48391448 48386211 ID=Msa0254790;Name=Msa0254790
chr2_2 mRNA 48386211 48391448 48386211 ID=Msa0254790-mRNA-1;Parent=Msa0254790;Name=Msa0254790-mRNA-1;_AED=0.10;_eAED=0.10;_QI=168|0.75|0.88|0.88|1|1|9|277|550
chr2_2 exon 48386211 48386447 48386211 ID=Msa0254790-mRNA-1:exon:14603;Parent=Msa0254790-mRNA-1
chr2_2 exon 48386575 48386630 48386575 ID=Msa0254790-mRNA-1:exon:14604;Parent=Msa0254790-mRNA-1
chr2_2 exon 48386757 48386881 48386757 ID=Msa0254790-mRNA-1:exon:14605;Parent=Msa0254790-mRNA-1
chr2_2 exon 48387759 48387918 48387759 ID=Msa0254790-mRNA-1:exon:14606;Parent=Msa0254790-mRNA-1
chr2_2 exon 48389176 48389609 48389176 ID=Msa0254790-mRNA-1:exon:14607;Parent=Msa0254790-mRNA-1
chr2_2 exon 48389746 48390234 48389746 ID=Msa0254790-mRNA-1:exon:14608;Parent=Msa0254790-mRNA-1
chr2_2 exon 48390476 48390596 48390476 ID=Msa0254790-mRNA-1:exon:14609;Parent=Msa0254790-mRNA-1
chr2_2 exon 48390686 48390757 48390686 ID=Msa0254790-mRNA-1:exon:14610;Parent=Msa0254790-mRNA-1
chr2_2 exon 48391045 48391448 48391045 ID=Msa0254790-mRNA-1:exon:14611;Parent=Msa0254790-mRNA-1
chr2_2 five_prime_UTR 48386211 48386378 48386211 ID=Msa0254790-mRNA-1:five_prime_utr;Parent=Msa0254790-mRNA-1
chr2_2 CDS 48386379 48386447 48386379 ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2 CDS 48386575 48386630 48386575 ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2 CDS 48386757 48386881 48386757 ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2 CDS 48387759 48387918 48387759 ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2 CDS 48389176 48389609 48389176 ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2 CDS 48389746 48390234 48389746 ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2 CDS 48390476 48390596 48390476 ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2 CDS 48390686 48390757 48390686 ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2 CDS 48391045 48391171 48391045 ID=Msa0254790-mRNA-1:cds;Parent=Msa0254790-mRNA-1
chr2_2 three_prime_UTR 48391172 48391448 48391172 ID=Msa0254790-mRNA-1:three_prime_utr;Parent=Msa0254790-mRNA-1
Gene Sequence

>Msa0254790

ATGTCGAACACCGAAACCCTATCCCTAATTCACGAAATCGAATCTCTCGTCTCAGATCAACTTCAAGTGGTTTCATACAAGTGGCTTAGTCGCAATTATAAGATATCATCAAATGAAGCAAAAAGGTTGCTTCAGGAATTTGTTGAAAAACATGAGGATGGGTTGGAAGTGGTGTATGCTTTGTCTGGCTGGTTAAAGAGTAGTATTCCTAGCTACCATGTAAAGCTTGTTACTGGGACAATGCTTGCAGAAGCACAGAAAGAGTTTGATGGGAAATGCTCAGTCCAGGTATATAGTGTGCAAGCTAGTATTCCAAAGGATGCAGCTGTGCTTTGGAATGCAGAATTCATTCAAGCAGAAGAGCTCTTCAAGCAGTCTCCCAAAGATGATAATTGCTTGAGAGACAATAGATTCTGTGGGATCTCTAATTCTTTTGTACAAAGGAACGTGGTCGTGGATGGACAACCAGCTGTTTCTGCCACTCCACAAGTAAAATCTGTAGTAGGCTTGGGACCAACAAAGAGTAATGTTGTTCACCAACCTCCGAAAAACATAGCACACAATTCTATTGCTAAAGTTGATCTCAAAACACAGAATGTGGTGAAAGATGTCAAGAATGAAAGCAATGGTACAGGAAATGCAGGAGTTCATGATAACATCAATAAACCTATTGCAGAGAAAGAAAAGTCTCTTCCCTTGCCCGCAGGTAAAAAGAAAGTACAAGCTGATAAAAGTGGCTCTGTTAATGGAGGTTCGTTGGCAAGCTTCTGGGGTCGTCCATCTGCAAAACCCAAGCCTTGCGCCGTGCCAGAGGAAAATAGTAACATGATTTCAAAACCTGCAGAAGCTATTGAAAATGCCCAAACTTGTGCTCATGAAGCAGTACTGGGTGACAGTGATGACGATGATAATCAAGGTGTCGCCTTAAGAAAATCATCCAACAGGAAAAGGAGGGTTGTCTTTGATTTCTCAGATGAAGATGAAGATGCCATCAGTTTAGCATCACCTGAGGTCCCTAGTAAACTGTCATCTAAAGATTCCAAACAAAATGACAAAAAGTCATTAGAGAAAGTTGCTTTGAATTTTGATTTACCGGTAGAAATTAAACCATTGGTTAAGGAAGAGAGAGTAACTGAGAAAAAAGTTTTCCAACCACCAAAAGATTTATCAGTTATCACCAAGTGCACAAGTACTGGGAAACCATCTACTGAGAAGTTGCAGAGCAGTGCTCCGGAAATTTGTGTAAATAAGGATAGTGCAAAAAAGGTCTCTTCAGGTTCACCTAAGAGGAGAAAAGTGATGAAGACCAGGATTGATGAACGAGGAAGAGAAGTAACTGAAGTAGTCTGGGAGGGGGAGGAGACAGAGCCAAAGAAAGATGACAAGGATACAGCTAAGAAAGCTGATACGGTTGCAAAGAAAGCGGACAATATATCTACCAAAGCTGTTAACGGGTGTCCCTTGAAGTATACAGTGATTCTCATTAGGTTTGCTTTGCACAGTCTTATTTCTAAAGTTGCTTCAAGCGCACCGGCAACTAAGAAGCCACCAGCTACATCAAATACTACTGGAAGAGGAGGAAGCAAGAAAGCAGGAAACATAAAGGATCCCAAACAGGGCAATATTCTTTCATTTTTCAAAAAGAAAGTATGA

Protein sequence

>Msa0254790

MSNTETLSLIHEIESLVSDQLQVVSYKWLSRNYKISSNEAKRLLQEFVEKHEDGLEVVYALSGWLKSSIPSYHVKLVTGTMLAEAQKEFDGKCSVQVYSVQASIPKDAAVLWNAEFIQAEELFKQSPKDDNCLRDNRFCGISNSFVQRNVVVDGQPAVSATPQVKSVVGLGPTKSNVVHQPPKNIAHNSIAKVDLKTQNVVKDVKNESNGTGNAGVHDNINKPIAEKEKSLPLPAGKKKVQADKSGSVNGGSLASFWGRPSAKPKPCAVPEENSNMISKPAEAIENAQTCAHEAVLGDSDDDDNQGVALRKSSNRKRRVVFDFSDEDEDAISLASPEVPSKLSSKDSKQNDKKSLEKVALNFDLPVEIKPLVKEERVTEKKVFQPPKDLSVITKCTSTGKPSTEKLQSSAPEICVNKDSAKKVSSGSPKRRKVMKTRIDERGREVTEVVWEGEETEPKKDDKDTAKKADTVAKKADNISTKAVNGCPLKYTVILIRFALHSLISKVASSAPATKKPPATSNTTGRGGSKKAGNIKDPKQGNILSFFKKKV*