AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1466990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1466990 MtrunA17_Chr5g0443361 92.920 113 2 2 1 113 41 147 1.59e-67 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1466990 AT2G42870.1 53.704 54 25 0 60 113 65 118 2.42e-17 72.0
Msa1466990 AT3G58850.1 59.649 57 23 0 57 113 62 118 2.76e-17 72.0

Find 0 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATGTTGATAAAAGAAGT+TGG + tig0049543:41-60 Msa1466990:CDS 25.0%
AAAGAAGAAGAAGAAGAAGA+AGG + tig0049543:119-138 Msa1466990:CDS 30.0%
!! TACTGGTTTCTTTGAAAAGT+TGG + tig0049543:292-311 Msa1466990:CDS 30.0%
! TTTCTTTGAAAAGTTGGAGA+AGG + tig0049543:298-317 Msa1466990:CDS 30.0%
AAGAAGAAGGTAGTGATGAT+AGG + tig0049543:132-151 Msa1466990:CDS 35.0%
AGAAGAAGGTAGTGATGATA+GGG + tig0049543:133-152 Msa1466990:CDS 35.0%
! AAGCTTTTTGATGAAACTGC+TGG + tig0049543:224-243 Msa1466990:CDS 35.0%
!! AAAGCTTTGAAAGCTCTTAC+TGG + tig0049543:275-294 Msa1466990:CDS 35.0%
TGCTGTTGAGGAGAAAGAAA+AGG + tig0049543:91-110 Msa1466990:CDS 40.0%
GAAAGATTCATGCATTGCAG+AGG + tig0049543:168-187 Msa1466990:CDS 40.0%
TTGCAGAGGATTGTACCTAA+TGG + tig0049543:182-201 Msa1466990:CDS 40.0%
! GTACCTAATGGTGAGTCTTT+TGG + tig0049543:194-213 Msa1466990:CDS 40.0%
ACACCAAAAGACTCACCATT+AGG - tig0049543:200-219 Msa1466990:intergenic 40.0%
! TAATGGTGAGTCTTTTGGTG+TGG + tig0049543:199-218 Msa1466990:CDS 40.0%
GAGAAGGACAAGACTAAACT+TGG + tig0049543:314-333 Msa1466990:CDS 40.0%
AAGGACAAGACTAAACTTGG+AGG + tig0049543:317-336 Msa1466990:CDS 40.0%
! GAGTGATGATTGTGCTGTTG+AGG + tig0049543:79-98 Msa1466990:CDS 45.0%
!! AGAAGGTGGTGGTGGTAGCA+AGG + tig0049543:16-35 Msa1466990:CDS 55.0%
CGAAGACGGTGCACAGAAGG+TGG + tig0049543:2-21 Msa1466990:CDS 60.0%
AGACGGTGCACAGAAGGTGG+TGG + tig0049543:5-24 Msa1466990:CDS 60.0%
! CGGTGCACAGAAGGTGGTGG+TGG + tig0049543:8-27 Msa1466990:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0049543 gene 2 343 2 ID=Msa1466990;Name=Msa1466990
tig0049543 mRNA 2 343 2 ID=Msa1466990-mRNA-1;Parent=Msa1466990;Name=Msa1466990-mRNA-1;_AED=0.00;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|113
tig0049543 exon 2 343 2 ID=Msa1466990-mRNA-1:exon:25179;Parent=Msa1466990-mRNA-1
tig0049543 CDS 2 343 2 ID=Msa1466990-mRNA-1:cds;Parent=Msa1466990-mRNA-1
Gene Sequence

>Msa1466990

CGAAGACGGTGCACAGAAGGTGGTGGTGGTAGCAAGGAAAAGATGTTGATAAAAGAAGTTGGTATGAATGATGTGAAGAGTGATGATTGTGCTGTTGAGGAGAAAGAAAAGGAAGAAAAAGAAGAAGAAGAAGAAGAAGGTAGTGATGATAGGGAAGAAGTAGAGAGAAAGATTCATGCATTGCAGAGGATTGTACCTAATGGTGAGTCTTTTGGTGTGGACAAGCTTTTTGATGAAACTGCTGGCTATATTGTTGCTTTACAGTATCAAGTCAAAGCTTTGAAAGCTCTTACTGGTTTCTTTGAAAAGTTGGAGAAGGACAAGACTAAACTTGGAGGTTGA

Protein sequence

>Msa1466990

RRRCTEGGGGSKEKMLIKEVGMNDVKSDDCAVEEKEKEEKEEEEEEGSDDREEVERKIHALQRIVPNGESFGVDKLFDETAGYIVALQYQVKALKALTGFFEKLEKDKTKLGG*