Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295670 | sp|Q8LC79|GAT18_ARATH | 38.889 | 288 | 94 | 12 | 20 | 234 | 17 | 295 | 4.76e-45 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295670 | G7LE01 | 89.627 | 241 | 15 | 3 | 1 | 234 | 1 | 238 | 4.48e-124 | 360 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1295670 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009780 | Msa1295670 | 0.809767 | 1.607588e-50 | -8.615850e-47 |
| Msa0015570 | Msa1295670 | 0.809785 | 1.593456e-50 | -8.615850e-47 |
| Msa0030070 | Msa1295670 | 0.807220 | 5.621836e-50 | -8.615850e-47 |
| Msa0091350 | Msa1295670 | 0.802639 | 5.100536e-49 | -8.615850e-47 |
| Msa0608350 | Msa1295670 | 0.819244 | 1.285643e-52 | -8.615850e-47 |
| Msa0647440 | Msa1295670 | 0.819846 | 9.372639e-53 | -8.615850e-47 |
| Msa0648760 | Msa1295670 | 0.823519 | 1.325707e-53 | -8.615850e-47 |
| Msa0653160 | Msa1295670 | 0.810193 | 1.301734e-50 | -8.615850e-47 |
| Msa0657210 | Msa1295670 | 0.806871 | 6.665739e-50 | -8.615850e-47 |
| Msa0663290 | Msa1295670 | 0.800974 | 1.120338e-48 | -8.615850e-47 |
| Msa0688620 | Msa1295670 | 0.824048 | 9.968797e-54 | -8.615850e-47 |
| Msa0690320 | Msa1295670 | 0.811881 | 5.606760e-51 | -8.615850e-47 |
| Msa0691270 | Msa1295670 | 0.827897 | 1.213834e-54 | -8.615850e-47 |
| Msa0695560 | Msa1295670 | 0.810103 | 1.361431e-50 | -8.615850e-47 |
| Msa0701250 | Msa1295670 | 0.804169 | 2.457201e-49 | -8.615850e-47 |
| Msa0717900 | Msa1295670 | 0.807202 | 5.670910e-50 | -8.615850e-47 |
| Msa0749190 | Msa1295670 | 0.823375 | 1.432816e-53 | -8.615850e-47 |
| Msa0750520 | Msa1295670 | 0.821842 | 3.256964e-53 | -8.615850e-47 |
| Msa0751720 | Msa1295670 | 0.803195 | 3.913657e-49 | -8.615850e-47 |
| Msa0816080 | Msa1295670 | 0.809132 | 2.201294e-50 | -8.615850e-47 |
| Msa0827420 | Msa1295670 | 0.800509 | 1.393775e-48 | -8.615850e-47 |
| Msa0837680 | Msa1295670 | 0.800790 | 1.221640e-48 | -8.615850e-47 |
| Msa0125590 | Msa1295670 | 0.817715 | 2.856653e-52 | -8.615850e-47 |
| Msa0156050 | Msa1295670 | 0.802233 | 6.182900e-49 | -8.615850e-47 |
| Msa0156090 | Msa1295670 | 0.807170 | 5.759572e-50 | -8.615850e-47 |
| Msa1267930 | Msa1295670 | 0.804430 | 2.168559e-49 | -8.615850e-47 |
| Msa1294460 | Msa1295670 | 0.804898 | 1.731961e-49 | -8.615850e-47 |
| Msa1294790 | Msa1295670 | 0.822727 | 2.028919e-53 | -8.615850e-47 |
| Msa1295670 | Msa1308860 | 0.802745 | 4.849838e-49 | -8.615850e-47 |
| Msa1295670 | Msa1342810 | 0.800121 | 1.672397e-48 | -8.615850e-47 |
| Msa1295670 | Msa1381800 | 0.824017 | 1.013469e-53 | -8.615850e-47 |
| Msa1295670 | Msa1406720 | 0.825048 | 5.796918e-54 | -8.615850e-47 |
| Msa1295670 | Msa1434640 | 0.806710 | 7.207407e-50 | -8.615850e-47 |
| Msa0373170 | Msa1295670 | 0.815801 | 7.675859e-52 | -8.615850e-47 |
| Msa0421750 | Msa1295670 | 0.807161 | 5.785527e-50 | -8.615850e-47 |
| Msa0433760 | Msa1295670 | 0.801856 | 7.391656e-49 | -8.615850e-47 |
| Msa0466520 | Msa1295670 | 0.831334 | 1.770309e-55 | -8.615850e-47 |
| Msa0467690 | Msa1295670 | 0.819032 | 1.437174e-52 | -8.615850e-47 |
| Msa0477630 | Msa1295670 | 0.807005 | 6.242851e-50 | -8.615850e-47 |
| Msa1071410 | Msa1295670 | 0.823775 | 1.154794e-53 | -8.615850e-47 |
| Msa0281540 | Msa1295670 | 0.825586 | 4.324239e-54 | -8.615850e-47 |
| Msa0320580 | Msa1295670 | 0.813289 | 2.759695e-51 | -8.615850e-47 |
| Msa0344110 | Msa1295670 | 0.819430 | 1.166338e-52 | -8.615850e-47 |
| Msa1219770 | Msa1295670 | 0.803799 | 2.933484e-49 | -8.615850e-47 |
| Msa0507810 | Msa1295670 | 0.809267 | 2.059160e-50 | -8.615850e-47 |
| Msa0507920 | Msa1295670 | 0.805695 | 1.179255e-49 | -8.615850e-47 |
| Msa0512530 | Msa1295670 | 0.803584 | 3.250640e-49 | -8.615850e-47 |
| Msa0514020 | Msa1295670 | 0.825320 | 4.998437e-54 | -8.615850e-47 |
| Msa0527850 | Msa1295670 | 0.808401 | 3.154182e-50 | -8.615850e-47 |
| Msa0541740 | Msa1295670 | 0.808883 | 2.487958e-50 | -8.615850e-47 |
| Msa0554300 | Msa1295670 | 0.827960 | 1.172044e-54 | -8.615850e-47 |
| Msa0561560 | Msa1295670 | 0.801324 | 9.503210e-49 | -8.615850e-47 |
| Msa0564980 | Msa1295670 | 0.818014 | 2.444899e-52 | -8.615850e-47 |
| Msa0582460 | Msa1295670 | 0.804925 | 1.708962e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295670 | MtrunA17_Chr8g0373231 | 89.627 | 241 | 15 | 3 | 1 | 234 | 1 | 238 | 8.63e-128 | 360 |
| Msa1295670 | MtrunA17_Chr5g0404131 | 54.472 | 246 | 79 | 12 | 1 | 224 | 71 | 305 | 8.79e-67 | 208 |
| Msa1295670 | MtrunA17_Chr1g0151461 | 59.322 | 59 | 21 | 2 | 114 | 172 | 179 | 234 | 1.23e-13 | 68.9 |
| Msa1295670 | MtrunA17_Chr7g0271861 | 65.789 | 38 | 13 | 0 | 120 | 157 | 18 | 55 | 1.64e-13 | 65.5 |
| Msa1295670 | MtrunA17_Chr4g0071301 | 55.385 | 65 | 27 | 2 | 89 | 153 | 159 | 221 | 1.89e-13 | 68.6 |
| Msa1295670 | MtrunA17_Chr4g0068031 | 67.568 | 37 | 12 | 0 | 124 | 160 | 30 | 66 | 8.69e-13 | 63.9 |
| Msa1295670 | MtrunA17_Chr1g0213161 | 48.148 | 54 | 28 | 0 | 103 | 156 | 131 | 184 | 2.27e-12 | 64.3 |
| Msa1295670 | MtrunA17_Chr2g0326771 | 33.654 | 104 | 54 | 2 | 68 | 156 | 145 | 248 | 2.33e-12 | 65.1 |
| Msa1295670 | MtrunA17_Chr4g0028961 | 56.098 | 41 | 18 | 0 | 116 | 156 | 224 | 264 | 4.81e-12 | 64.3 |
| Msa1295670 | MtrunA17_Chr1g0199671 | 56.250 | 48 | 15 | 1 | 109 | 156 | 233 | 274 | 1.24e-11 | 63.2 |
| Msa1295670 | MtrunA17_Chr3g0145121 | 51.111 | 45 | 22 | 0 | 112 | 156 | 203 | 247 | 1.51e-11 | 62.8 |
| Msa1295670 | MtrunA17_Chr8g0372291 | 45.455 | 55 | 30 | 0 | 102 | 156 | 196 | 250 | 7.19e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295670 | AT3G50870.1 | 38.889 | 288 | 94 | 12 | 20 | 234 | 17 | 295 | 4.84e-46 | 155 |
| Msa1295670 | AT2G18380.1 | 50.633 | 158 | 64 | 4 | 23 | 178 | 1 | 146 | 2.05e-38 | 133 |
| Msa1295670 | AT4G36620.1 | 41.346 | 208 | 83 | 6 | 52 | 233 | 16 | 210 | 1.08e-33 | 120 |
| Msa1295670 | AT5G56860.1 | 64.000 | 50 | 15 | 2 | 110 | 157 | 215 | 263 | 2.21e-13 | 68.9 |
| Msa1295670 | AT4G26150.1 | 73.684 | 38 | 9 | 1 | 117 | 154 | 193 | 229 | 6.63e-13 | 67.4 |
| Msa1295670 | AT5G26930.1 | 68.571 | 35 | 11 | 0 | 126 | 160 | 28 | 62 | 6.75e-13 | 63.9 |
| Msa1295670 | AT5G49300.1 | 71.429 | 35 | 10 | 0 | 126 | 160 | 38 | 72 | 1.32e-12 | 63.5 |
| Msa1295670 | AT3G06740.1 | 71.429 | 35 | 10 | 0 | 126 | 160 | 43 | 77 | 2.24e-12 | 63.2 |
| Msa1295670 | AT3G54810.1 | 48.571 | 70 | 31 | 2 | 109 | 174 | 215 | 283 | 5.98e-12 | 64.7 |
| Msa1295670 | AT3G54810.2 | 48.571 | 70 | 31 | 2 | 109 | 174 | 215 | 283 | 5.98e-12 | 64.7 |
| Msa1295670 | AT1G08010.2 | 58.537 | 41 | 16 | 1 | 116 | 156 | 213 | 252 | 2.30e-11 | 62.8 |
| Msa1295670 | AT1G08010.1 | 58.537 | 41 | 16 | 1 | 116 | 156 | 213 | 252 | 2.30e-11 | 62.8 |
| Msa1295670 | AT1G08010.3 | 58.537 | 41 | 16 | 1 | 116 | 156 | 213 | 252 | 2.30e-11 | 62.8 |
| Msa1295670 | AT4G32890.1 | 30.769 | 143 | 74 | 5 | 22 | 156 | 104 | 229 | 3.67e-11 | 62.0 |
| Msa1295670 | AT4G34680.1 | 42.188 | 64 | 30 | 1 | 93 | 156 | 156 | 212 | 4.65e-11 | 61.6 |
| Msa1295670 | AT4G34680.2 | 42.188 | 64 | 30 | 1 | 93 | 156 | 156 | 212 | 4.65e-11 | 61.6 |
| Msa1295670 | AT3G20750.1 | 66.667 | 33 | 11 | 0 | 129 | 161 | 164 | 196 | 8.06e-11 | 60.1 |
| Msa1295670 | AT3G60530.1 | 40.964 | 83 | 41 | 2 | 79 | 156 | 111 | 190 | 8.53e-11 | 60.5 |
Find 53 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTCCAAATTTCCTTTCT+TGG | 0.186888 | 8_3:-53836686 | Msa1295670:CDS |
| AGTCTCCAAGAAAGGAAATT+TGG | 0.258564 | 8_3:+53836681 | None:intergenic |
| CTCTGTCTTGCTTAAGAATA+TGG | 0.262508 | 8_3:-53836404 | Msa1295670:three_prime_UTR |
| GATGGAGTAGTGTAAGAGTA+AGG | 0.348845 | 8_3:+53837472 | None:intergenic |
| ATTGTTTCCTTTGCTTGACT+TGG | 0.370949 | 8_3:+53837306 | None:intergenic |
| TATTATGTTGCAATGTTGTA+TGG | 0.378046 | 8_3:+53837687 | None:intergenic |
| TCAAGCAAAGGAAACAATAT+TGG | 0.387578 | 8_3:-53837301 | Msa1295670:CDS |
| TCTACAACAACAACAATTCA+TGG | 0.388097 | 8_3:-53836785 | Msa1295670:CDS |
| CTACAACAATGATGCATCAT+TGG | 0.421362 | 8_3:+53837619 | None:intergenic |
| AGTCACTATGCAATGCTTGC+GGG | 0.430912 | 8_3:-53836896 | Msa1295670:CDS |
| CGCGACTAACAGCAGCATAA+TGG | 0.440251 | 8_3:-53836820 | Msa1295670:CDS |
| ACACCACTTCTACACCCCTT+TGG | 0.442678 | 8_3:-53837228 | Msa1295670:CDS |
| AGCGACGGTTTCGTTTATCT+TGG | 0.447089 | 8_3:+53837392 | None:intergenic |
| TCTCAACAAGGTCACATAAT+GGG | 0.447815 | 8_3:-53837592 | Msa1295670:CDS |
| CTCTCAACAAGGTCACATAA+TGG | 0.454874 | 8_3:-53837593 | Msa1295670:CDS |
| CCACTTCTACACCCCTTTGG+AGG | 0.484365 | 8_3:-53837225 | Msa1295670:CDS |
| GAGTAGTTAGAATTTGTTTG+AGG | 0.488131 | 8_3:+53837541 | None:intergenic |
| TTGAGAATTATGTTTAGTGT+TGG | 0.488709 | 8_3:+53837336 | None:intergenic |
| ACGAGGACCATTCCTCCAAA+GGG | 0.492453 | 8_3:+53837213 | None:intergenic |
| AACAGCAGCATAATGGAGTC+AGG | 0.496113 | 8_3:-53836813 | Msa1295670:CDS |
| TGGCAGTGAGCTAAATTTCA+TGG | 0.499631 | 8_3:-53836736 | Msa1295670:CDS |
| TCTACACCCCTTTGGAGGAA+TGG | 0.501186 | 8_3:-53837220 | Msa1295670:CDS |
| TTCAGATAAACGTGTGGAAG+GGG | 0.521943 | 8_3:+53837417 | None:intergenic |
| TTGTGTTGAGTCTCCAAGAA+AGG | 0.529190 | 8_3:+53836673 | None:intergenic |
| ATGGAGTAGTGTAAGAGTAA+GGG | 0.532615 | 8_3:+53837473 | None:intergenic |
| GATGGTTATGGTCTCGTCAA+CGG | 0.540505 | 8_3:-53836481 | Msa1295670:three_prime_UTR |
| CAGTCACTATGCAATGCTTG+CGG | 0.541543 | 8_3:-53836897 | Msa1295670:CDS |
| CACGAGGACCATTCCTCCAA+AGG | 0.545071 | 8_3:+53837212 | None:intergenic |
| CTTCAGATAAACGTGTGGAA+GGG | 0.558291 | 8_3:+53837416 | None:intergenic |
| GTGCAATCAACAGAAGAAGA+TGG | 0.561538 | 8_3:+53837454 | None:intergenic |
| CAACCACAGAGTCAAATGTA+TGG | 0.561677 | 8_3:-53836756 | Msa1295670:CDS |
| CCTCCAAAGGGGTGTAGAAG+TGG | 0.563224 | 8_3:+53837225 | None:intergenic |
| GCTGTTAGTCGCGGCTGTAG+TGG | 0.564500 | 8_3:+53836830 | None:intergenic |
| TCTTTCTGTTCTATTAACGT+AGG | 0.574324 | 8_3:+53836574 | None:intergenic |
| TCAGATGCAGAATCAGAGAA+TGG | 0.577226 | 8_3:-53836708 | Msa1295670:CDS |
| TCTTCAGATAAACGTGTGGA+AGG | 0.585551 | 8_3:+53837415 | None:intergenic |
| GATTACACAAGATGAAACAT+TGG | 0.592007 | 8_3:-53836639 | Msa1295670:exon |
| GAATGGTCCTCGTGGCCCAA+AGG | 0.595177 | 8_3:-53837203 | Msa1295670:intron |
| AATGATGATGATGTAGATGT+AGG | 0.597026 | 8_3:-53836543 | Msa1295670:three_prime_UTR |
| CGCGGCTGTAGTGGCAACCG+CGG | 0.597888 | 8_3:+53836839 | None:intergenic |
| CATTATGCTGCTGTTAGTCG+CGG | 0.600615 | 8_3:+53836821 | None:intergenic |
| TCTCAATCCAAGTCAAGCAA+AGG | 0.601871 | 8_3:-53837313 | Msa1295670:CDS |
| CTGCCATACATTTGACTCTG+TGG | 0.604113 | 8_3:+53836753 | None:intergenic |
| AATTAGCAAGAGAAGAGCGA+CGG | 0.619540 | 8_3:+53837377 | None:intergenic |
| ATGGGAGGAACATGCACATG+TGG | 0.624656 | 8_3:-53837574 | Msa1295670:CDS |
| TTGCGGGATTAGATACAAGA+AGG | 0.629096 | 8_3:-53836880 | Msa1295670:CDS |
| AGAGAGAAGAGCGAACGCCG+CGG | 0.661922 | 8_3:-53836856 | Msa1295670:CDS |
| ATGTTTACCTTTGGGCCACG+AGG | 0.671239 | 8_3:+53837196 | None:intergenic |
| CTTTGGAGGAATGGTCCTCG+TGG | 0.675633 | 8_3:-53837211 | Msa1295670:CDS |
| CAACAAGGTCACATAATGGG+AGG | 0.680593 | 8_3:-53837589 | Msa1295670:CDS |
| TTGGTCTTCAGATAAACGTG+TGG | 0.689873 | 8_3:+53837411 | None:intergenic |
| CGAGGACCATTCCTCCAAAG+GGG | 0.705344 | 8_3:+53837214 | None:intergenic |
| TGTTGTAGTAGCTCTCAACA+AGG | 0.711133 | 8_3:-53837604 | Msa1295670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATTTATAGTCTATT+TGG | - | chr8_3:53836860-53836879 | Msa1295670:CDS | 15.0% |
| !!! | TTAAGAATGTTTTGTAATAA+TGG | - | chr8_3:53837027-53837046 | Msa1295670:intron | 15.0% |
| !! | AAAAACATTTATAGTCTATT+TGG | - | chr8_3:53836860-53836879 | Msa1295670:CDS | 15.0% |
| !!! | TTAAGAATGTTTTGTAATAA+TGG | - | chr8_3:53837027-53837046 | Msa1295670:intron | 15.0% |
| !!! | AATCATAATGATCATTTTGT+TGG | + | chr8_3:53836464-53836483 | None:intergenic | 20.0% |
| !!! | AATCATAATGATCATTTTGT+TGG | + | chr8_3:53836464-53836483 | None:intergenic | 20.0% |
| ! | TATTATGTTGCAATGTTGTA+TGG | + | chr8_3:53836277-53836296 | None:intergenic | 25.0% |
| ! | TTGAGAATTATGTTTAGTGT+TGG | + | chr8_3:53836628-53836647 | None:intergenic | 25.0% |
| ! | GAACAAGATGAAAAAGAAAA+AGG | + | chr8_3:53837524-53837543 | None:intergenic | 25.0% |
| ! | TATTATGTTGCAATGTTGTA+TGG | + | chr8_3:53836277-53836296 | None:intergenic | 25.0% |
| ! | TTGAGAATTATGTTTAGTGT+TGG | + | chr8_3:53836628-53836647 | None:intergenic | 25.0% |
| ! | GAACAAGATGAAAAAGAAAA+AGG | + | chr8_3:53837524-53837543 | None:intergenic | 25.0% |
| ! | GAGTAGTTAGAATTTGTTTG+AGG | + | chr8_3:53836423-53836442 | None:intergenic | 30.0% |
| TCAAGCAAAGGAAACAATAT+TGG | - | chr8_3:53836660-53836679 | Msa1295670:CDS | 30.0% | |
| GGTAATGTATGTTTACCTTT+GGG | + | chr8_3:53836776-53836795 | None:intergenic | 30.0% | |
| ! | TGGTAATGTATGTTTACCTT+TGG | + | chr8_3:53836777-53836796 | None:intergenic | 30.0% |
| AACATTTATAGTCTACTACG+AGG | + | chr8_3:53836835-53836854 | None:intergenic | 30.0% | |
| CGTAGTAGACTATAAATGTT+CGG | - | chr8_3:53836835-53836854 | Msa1295670:CDS | 30.0% | |
| TCTACAACAACAACAATTCA+TGG | - | chr8_3:53837176-53837195 | Msa1295670:intron | 30.0% | |
| GATTACACAAGATGAAACAT+TGG | - | chr8_3:53837322-53837341 | Msa1295670:CDS | 30.0% | |
| TCTTTCTGTTCTATTAACGT+AGG | + | chr8_3:53837390-53837409 | None:intergenic | 30.0% | |
| ! | AATGATGATGATGTAGATGT+AGG | - | chr8_3:53837418-53837437 | Msa1295670:CDS | 30.0% |
| !! | GTAGATGTTTTTGATTGTGA+TGG | - | chr8_3:53837462-53837481 | Msa1295670:CDS | 30.0% |
| !! | GTTTTTGATTGTGATGGTTA+TGG | - | chr8_3:53837468-53837487 | Msa1295670:CDS | 30.0% |
| ! | GAGTAGTTAGAATTTGTTTG+AGG | + | chr8_3:53836423-53836442 | None:intergenic | 30.0% |
| TCAAGCAAAGGAAACAATAT+TGG | - | chr8_3:53836660-53836679 | Msa1295670:CDS | 30.0% | |
| GGTAATGTATGTTTACCTTT+GGG | + | chr8_3:53836776-53836795 | None:intergenic | 30.0% | |
| ! | TGGTAATGTATGTTTACCTT+TGG | + | chr8_3:53836777-53836796 | None:intergenic | 30.0% |
| AACATTTATAGTCTACTACG+AGG | + | chr8_3:53836835-53836854 | None:intergenic | 30.0% | |
| CGTAGTAGACTATAAATGTT+CGG | - | chr8_3:53836835-53836854 | Msa1295670:CDS | 30.0% | |
| TCTACAACAACAACAATTCA+TGG | - | chr8_3:53837176-53837195 | Msa1295670:intron | 30.0% | |
| GATTACACAAGATGAAACAT+TGG | - | chr8_3:53837322-53837341 | Msa1295670:CDS | 30.0% | |
| TCTTTCTGTTCTATTAACGT+AGG | + | chr8_3:53837390-53837409 | None:intergenic | 30.0% | |
| ! | AATGATGATGATGTAGATGT+AGG | - | chr8_3:53837418-53837437 | Msa1295670:CDS | 30.0% |
| !! | GTAGATGTTTTTGATTGTGA+TGG | - | chr8_3:53837462-53837481 | Msa1295670:CDS | 30.0% |
| !! | GTTTTTGATTGTGATGGTTA+TGG | - | chr8_3:53837468-53837487 | Msa1295670:CDS | 30.0% |
| CTACAACAATGATGCATCAT+TGG | + | chr8_3:53836345-53836364 | None:intergenic | 35.0% | |
| TCTCAACAAGGTCACATAAT+GGG | - | chr8_3:53836369-53836388 | Msa1295670:three_prime_UTR | 35.0% | |
| ATGGAGTAGTGTAAGAGTAA+GGG | + | chr8_3:53836491-53836510 | None:intergenic | 35.0% | |
| ATTGTTTCCTTTGCTTGACT+TGG | + | chr8_3:53836658-53836677 | None:intergenic | 35.0% | |
| TTTGAACATAGACACGAAGA+TGG | + | chr8_3:53836797-53836816 | None:intergenic | 35.0% | |
| ! | TCTGACTTTGACTTTGTTAG+TGG | - | chr8_3:53836903-53836922 | Msa1295670:intron | 35.0% |
| ! | CTGACTTTGACTTTGTTAGT+GGG | - | chr8_3:53836904-53836923 | Msa1295670:intron | 35.0% |
| GCATTCCAAATTTCCTTTCT+TGG | - | chr8_3:53837275-53837294 | Msa1295670:CDS | 35.0% | |
| AGTCTCCAAGAAAGGAAATT+TGG | + | chr8_3:53837283-53837302 | None:intergenic | 35.0% | |
| CTCTGTCTTGCTTAAGAATA+TGG | - | chr8_3:53837557-53837576 | Msa1295670:CDS | 35.0% | |
| CTACAACAATGATGCATCAT+TGG | + | chr8_3:53836345-53836364 | None:intergenic | 35.0% | |
| TCTCAACAAGGTCACATAAT+GGG | - | chr8_3:53836369-53836388 | Msa1295670:three_prime_UTR | 35.0% | |
| ATGGAGTAGTGTAAGAGTAA+GGG | + | chr8_3:53836491-53836510 | None:intergenic | 35.0% | |
| ATTGTTTCCTTTGCTTGACT+TGG | + | chr8_3:53836658-53836677 | None:intergenic | 35.0% | |
| TTTGAACATAGACACGAAGA+TGG | + | chr8_3:53836797-53836816 | None:intergenic | 35.0% | |
| ! | TCTGACTTTGACTTTGTTAG+TGG | - | chr8_3:53836903-53836922 | Msa1295670:intron | 35.0% |
| ! | CTGACTTTGACTTTGTTAGT+GGG | - | chr8_3:53836904-53836923 | Msa1295670:intron | 35.0% |
| GCATTCCAAATTTCCTTTCT+TGG | - | chr8_3:53837275-53837294 | Msa1295670:CDS | 35.0% | |
| AGTCTCCAAGAAAGGAAATT+TGG | + | chr8_3:53837283-53837302 | None:intergenic | 35.0% | |
| CTCTGTCTTGCTTAAGAATA+TGG | - | chr8_3:53837557-53837576 | Msa1295670:CDS | 35.0% | |
| TGTTGTAGTAGCTCTCAACA+AGG | - | chr8_3:53836357-53836376 | Msa1295670:three_prime_UTR | 40.0% | |
| CTCTCAACAAGGTCACATAA+TGG | - | chr8_3:53836368-53836387 | Msa1295670:three_prime_UTR | 40.0% | |
| GATGGAGTAGTGTAAGAGTA+AGG | + | chr8_3:53836492-53836511 | None:intergenic | 40.0% | |
| GTGCAATCAACAGAAGAAGA+TGG | + | chr8_3:53836510-53836529 | None:intergenic | 40.0% | |
| TTCAGATAAACGTGTGGAAG+GGG | + | chr8_3:53836547-53836566 | None:intergenic | 40.0% | |
| CTTCAGATAAACGTGTGGAA+GGG | + | chr8_3:53836548-53836567 | None:intergenic | 40.0% | |
| TCTTCAGATAAACGTGTGGA+AGG | + | chr8_3:53836549-53836568 | None:intergenic | 40.0% | |
| ! | TTGGTCTTCAGATAAACGTG+TGG | + | chr8_3:53836553-53836572 | None:intergenic | 40.0% |
| AATTAGCAAGAGAAGAGCGA+CGG | + | chr8_3:53836587-53836606 | None:intergenic | 40.0% | |
| TCTCAATCCAAGTCAAGCAA+AGG | - | chr8_3:53836648-53836667 | Msa1295670:CDS | 40.0% | |
| TATAGTCTACTACGAGGTCT+CGG | + | chr8_3:53836829-53836848 | None:intergenic | 40.0% | |
| GTCAGACTCTTACTACTGAA+CGG | + | chr8_3:53836889-53836908 | None:intergenic | 40.0% | |
| TTGCGGGATTAGATACAAGA+AGG | - | chr8_3:53837081-53837100 | Msa1295670:intron | 40.0% | |
| CAACCACAGAGTCAAATGTA+TGG | - | chr8_3:53837205-53837224 | Msa1295670:CDS | 40.0% | |
| TGGCAGTGAGCTAAATTTCA+TGG | - | chr8_3:53837225-53837244 | Msa1295670:CDS | 40.0% | |
| TCAGATGCAGAATCAGAGAA+TGG | - | chr8_3:53837253-53837272 | Msa1295670:CDS | 40.0% | |
| TTGTGTTGAGTCTCCAAGAA+AGG | + | chr8_3:53837291-53837310 | None:intergenic | 40.0% | |
| TGTTGTAGTAGCTCTCAACA+AGG | - | chr8_3:53836357-53836376 | Msa1295670:three_prime_UTR | 40.0% | |
| CTCTCAACAAGGTCACATAA+TGG | - | chr8_3:53836368-53836387 | Msa1295670:three_prime_UTR | 40.0% | |
| GATGGAGTAGTGTAAGAGTA+AGG | + | chr8_3:53836492-53836511 | None:intergenic | 40.0% | |
| GTGCAATCAACAGAAGAAGA+TGG | + | chr8_3:53836510-53836529 | None:intergenic | 40.0% | |
| TTCAGATAAACGTGTGGAAG+GGG | + | chr8_3:53836547-53836566 | None:intergenic | 40.0% | |
| CTTCAGATAAACGTGTGGAA+GGG | + | chr8_3:53836548-53836567 | None:intergenic | 40.0% | |
| TCTTCAGATAAACGTGTGGA+AGG | + | chr8_3:53836549-53836568 | None:intergenic | 40.0% | |
| ! | TTGGTCTTCAGATAAACGTG+TGG | + | chr8_3:53836553-53836572 | None:intergenic | 40.0% |
| AATTAGCAAGAGAAGAGCGA+CGG | + | chr8_3:53836587-53836606 | None:intergenic | 40.0% | |
| TCTCAATCCAAGTCAAGCAA+AGG | - | chr8_3:53836648-53836667 | Msa1295670:CDS | 40.0% | |
| TATAGTCTACTACGAGGTCT+CGG | + | chr8_3:53836829-53836848 | None:intergenic | 40.0% | |
| GTCAGACTCTTACTACTGAA+CGG | + | chr8_3:53836889-53836908 | None:intergenic | 40.0% | |
| TTGCGGGATTAGATACAAGA+AGG | - | chr8_3:53837081-53837100 | Msa1295670:intron | 40.0% | |
| CAACCACAGAGTCAAATGTA+TGG | - | chr8_3:53837205-53837224 | Msa1295670:CDS | 40.0% | |
| TGGCAGTGAGCTAAATTTCA+TGG | - | chr8_3:53837225-53837244 | Msa1295670:CDS | 40.0% | |
| TCAGATGCAGAATCAGAGAA+TGG | - | chr8_3:53837253-53837272 | Msa1295670:CDS | 40.0% | |
| TTGTGTTGAGTCTCCAAGAA+AGG | + | chr8_3:53837291-53837310 | None:intergenic | 40.0% | |
| ! | CAACAAGGTCACATAATGGG+AGG | - | chr8_3:53836372-53836391 | Msa1295670:three_prime_UTR | 45.0% |
| AGCGACGGTTTCGTTTATCT+TGG | + | chr8_3:53836572-53836591 | None:intergenic | 45.0% | |
| CAGTCACTATGCAATGCTTG+CGG | - | chr8_3:53837064-53837083 | Msa1295670:intron | 45.0% | |
| AGTCACTATGCAATGCTTGC+GGG | - | chr8_3:53837065-53837084 | Msa1295670:intron | 45.0% | |
| CATTATGCTGCTGTTAGTCG+CGG | + | chr8_3:53837143-53837162 | None:intergenic | 45.0% | |
| ! | AACAGCAGCATAATGGAGTC+AGG | - | chr8_3:53837148-53837167 | Msa1295670:intron | 45.0% |
| CTGCCATACATTTGACTCTG+TGG | + | chr8_3:53837211-53837230 | None:intergenic | 45.0% | |
| GATGGTTATGGTCTCGTCAA+CGG | - | chr8_3:53837480-53837499 | Msa1295670:CDS | 45.0% | |
| ! | CAACAAGGTCACATAATGGG+AGG | - | chr8_3:53836372-53836391 | Msa1295670:three_prime_UTR | 45.0% |
| AGCGACGGTTTCGTTTATCT+TGG | + | chr8_3:53836572-53836591 | None:intergenic | 45.0% | |
| CAGTCACTATGCAATGCTTG+CGG | - | chr8_3:53837064-53837083 | Msa1295670:intron | 45.0% | |
| AGTCACTATGCAATGCTTGC+GGG | - | chr8_3:53837065-53837084 | Msa1295670:intron | 45.0% | |
| CATTATGCTGCTGTTAGTCG+CGG | + | chr8_3:53837143-53837162 | None:intergenic | 45.0% | |
| ! | AACAGCAGCATAATGGAGTC+AGG | - | chr8_3:53837148-53837167 | Msa1295670:intron | 45.0% |
| CTGCCATACATTTGACTCTG+TGG | + | chr8_3:53837211-53837230 | None:intergenic | 45.0% | |
| GATGGTTATGGTCTCGTCAA+CGG | - | chr8_3:53837480-53837499 | Msa1295670:CDS | 45.0% | |
| ATGGGAGGAACATGCACATG+TGG | - | chr8_3:53836387-53836406 | Msa1295670:three_prime_UTR | 50.0% | |
| ACACCACTTCTACACCCCTT+TGG | - | chr8_3:53836733-53836752 | Msa1295670:CDS | 50.0% | |
| ! | TCTACACCCCTTTGGAGGAA+TGG | - | chr8_3:53836741-53836760 | Msa1295670:CDS | 50.0% |
| ACGAGGACCATTCCTCCAAA+GGG | + | chr8_3:53836751-53836770 | None:intergenic | 50.0% | |
| ATGTTTACCTTTGGGCCACG+AGG | + | chr8_3:53836768-53836787 | None:intergenic | 50.0% | |
| CGCGACTAACAGCAGCATAA+TGG | - | chr8_3:53837141-53837160 | Msa1295670:intron | 50.0% | |
| ATGGGAGGAACATGCACATG+TGG | - | chr8_3:53836387-53836406 | Msa1295670:three_prime_UTR | 50.0% | |
| ACACCACTTCTACACCCCTT+TGG | - | chr8_3:53836733-53836752 | Msa1295670:CDS | 50.0% | |
| ! | TCTACACCCCTTTGGAGGAA+TGG | - | chr8_3:53836741-53836760 | Msa1295670:CDS | 50.0% |
| ACGAGGACCATTCCTCCAAA+GGG | + | chr8_3:53836751-53836770 | None:intergenic | 50.0% | |
| ATGTTTACCTTTGGGCCACG+AGG | + | chr8_3:53836768-53836787 | None:intergenic | 50.0% | |
| CGCGACTAACAGCAGCATAA+TGG | - | chr8_3:53837141-53837160 | Msa1295670:intron | 50.0% | |
| ! | CCTCCAAAGGGGTGTAGAAG+TGG | + | chr8_3:53836739-53836758 | None:intergenic | 55.0% |
| CCACTTCTACACCCCTTTGG+AGG | - | chr8_3:53836736-53836755 | Msa1295670:CDS | 55.0% | |
| CGAGGACCATTCCTCCAAAG+GGG | + | chr8_3:53836750-53836769 | None:intergenic | 55.0% | |
| CACGAGGACCATTCCTCCAA+AGG | + | chr8_3:53836752-53836771 | None:intergenic | 55.0% | |
| ! | CTTTGGAGGAATGGTCCTCG+TGG | - | chr8_3:53836750-53836769 | Msa1295670:CDS | 55.0% |
| ! | CCTCCAAAGGGGTGTAGAAG+TGG | + | chr8_3:53836739-53836758 | None:intergenic | 55.0% |
| CCACTTCTACACCCCTTTGG+AGG | - | chr8_3:53836736-53836755 | Msa1295670:CDS | 55.0% | |
| CGAGGACCATTCCTCCAAAG+GGG | + | chr8_3:53836750-53836769 | None:intergenic | 55.0% | |
| CACGAGGACCATTCCTCCAA+AGG | + | chr8_3:53836752-53836771 | None:intergenic | 55.0% | |
| ! | CTTTGGAGGAATGGTCCTCG+TGG | - | chr8_3:53836750-53836769 | Msa1295670:CDS | 55.0% |
| GAATGGTCCTCGTGGCCCAA+AGG | - | chr8_3:53836758-53836777 | Msa1295670:CDS | 60.0% | |
| AGAGAGAAGAGCGAACGCCG+CGG | - | chr8_3:53837105-53837124 | Msa1295670:intron | 60.0% | |
| GCTGTTAGTCGCGGCTGTAG+TGG | + | chr8_3:53837134-53837153 | None:intergenic | 60.0% | |
| GAATGGTCCTCGTGGCCCAA+AGG | - | chr8_3:53836758-53836777 | Msa1295670:CDS | 60.0% | |
| AGAGAGAAGAGCGAACGCCG+CGG | - | chr8_3:53837105-53837124 | Msa1295670:intron | 60.0% | |
| GCTGTTAGTCGCGGCTGTAG+TGG | + | chr8_3:53837134-53837153 | None:intergenic | 60.0% | |
| CGCGGCTGTAGTGGCAACCG+CGG | + | chr8_3:53837125-53837144 | None:intergenic | 70.0% | |
| CGCGGCTGTAGTGGCAACCG+CGG | + | chr8_3:53837125-53837144 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53836273 | 53837710 | 53836273 | ID=Msa1295670;Name=Msa1295670 |
| chr8_3 | mRNA | 53836273 | 53837710 | 53836273 | ID=Msa1295670-mRNA-1;Parent=Msa1295670;Name=Msa1295670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=72|1|1|1|1|1|2|374|234 |
| chr8_3 | exon | 53836273 | 53836916 | 53836273 | ID=Msa1295670-mRNA-1:exon:15510;Parent=Msa1295670-mRNA-1 |
| chr8_3 | exon | 53837204 | 53837710 | 53837204 | ID=Msa1295670-mRNA-1:exon:15509;Parent=Msa1295670-mRNA-1 |
| chr8_3 | five_prime_UTR | 53837639 | 53837710 | 53837639 | ID=Msa1295670-mRNA-1:five_prime_utr;Parent=Msa1295670-mRNA-1 |
| chr8_3 | CDS | 53837204 | 53837638 | 53837204 | ID=Msa1295670-mRNA-1:cds;Parent=Msa1295670-mRNA-1 |
| chr8_3 | CDS | 53836647 | 53836916 | 53836647 | ID=Msa1295670-mRNA-1:cds;Parent=Msa1295670-mRNA-1 |
| chr8_3 | three_prime_UTR | 53836273 | 53836646 | 53836273 | ID=Msa1295670-mRNA-1:three_prime_utr;Parent=Msa1295670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
