AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608350 MtrunA17_Chr4g0040361 94.967 755 30 2 1 755 1 747 0.0 1392
Msa0608350 MtrunA17_Chr5g0398421 28.039 510 265 12 16 523 28 437 1.17e-37 147
Msa0608350 MtrunA17_Chr4g0056701 38.119 202 106 8 321 518 221 407 3.24e-21 97.4
Msa0608350 MtrunA17_Chr7g0218721 32.692 156 101 3 582 734 277 431 1.03e-15 80.5
Msa0608350 MtrunA17_Chr6g0454541 25.943 212 97 4 526 736 310 462 5.37e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608350 AT1G03780.2 57.088 783 268 13 3 753 5 751 0.0 739
Msa0608350 AT1G03780.3 57.088 783 268 13 3 753 5 751 0.0 738
Msa0608350 AT1G03780.1 49.671 759 228 14 4 691 6 681 0.0 594
Msa0608350 AT4G22860.1 30.309 518 267 20 15 527 19 447 4.18e-40 155
Msa0608350 AT5G44270.1 59.615 104 41 1 637 739 192 295 4.53e-33 130
Msa0608350 AT4G22860.2 35.370 311 133 13 221 527 193 439 2.13e-30 126
Msa0608350 AT4G11990.1 39.640 222 118 8 313 532 238 445 5.88e-27 115
Msa0608350 AT4G22860.3 26.952 397 213 12 15 410 19 339 9.57e-24 104
Msa0608350 AT3G01015.1 28.444 225 101 4 526 749 306 471 5.77e-18 88.2
Msa0608350 AT5G15510.1 30.380 158 105 3 589 742 318 474 3.45e-13 73.2
Msa0608350 AT5G15510.2 30.657 137 91 2 589 722 318 453 2.75e-11 67.4
Msa0608350 AT5G15510.4 30.657 137 91 2 589 722 318 453 4.88e-11 66.2
Msa0608350 AT5G15510.3 30.657 137 91 2 589 722 318 453 4.88e-11 66.2

Find 206 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCCAACCACCAGAGTTTA+AGG 0.198968 4_2:-55351643 Msa0608350:intron
AGGGGTCTTGCCTTGAATTT+AGG 0.214809 4_2:+55351252 None:intergenic
ATTTCTGCCATTGATTTAAA+TGG 0.217117 4_2:+55352106 None:intergenic
CGCTGATTTGTCTCAAATTC+AGG 0.224630 4_2:+55351889 None:intergenic
AGCACAGATGAGAAAATTTA+AGG 0.234244 4_2:-55350391 Msa0608350:CDS
ACGGGATAGTCGGTGGTATA+GGG 0.241791 4_2:+55350618 None:intergenic
TCAAGTATCATAAACTTATA+TGG 0.247737 4_2:+55349303 None:intergenic
TTGCGGACCTTCTCTGGAAC+TGG 0.248620 4_2:+55350197 None:intergenic
GTTTGGAGTAGTGGAGGTTT+AGG 0.259564 4_2:+55351345 None:intergenic
GCCTCATGATAAGTCAAAAC+TGG 0.259780 4_2:-55352309 Msa0608350:CDS
GGTGGTTGGGGTGTACTTCT+TGG 0.275186 4_2:+55351654 None:intergenic
GCGTGTTTGTGTAATGTAAT+TGG 0.276229 4_2:+55354276 None:intergenic
CTTGAAAATTATGATTCTTT+TGG 0.279123 4_2:-55349285 Msa0608350:three_prime_UTR
TGGTGCATCCTCTTTCTTAA+TGG 0.281184 4_2:+55352888 None:intergenic
TACCTTAAACTCTGGTGGTT+GGG 0.282481 4_2:+55351641 None:intergenic
AACCATTGAACCGTCTTCTT+TGG 0.291708 4_2:+55349605 None:intergenic
TTTGAAAGTAAAGGGGATAT+TGG 0.292403 4_2:-55351131 Msa0608350:CDS
CATTGTTTGGGTTCTGGCTT+TGG 0.293707 4_2:+55350510 None:intergenic
AAGAGAATCAAGCCATTAAA+AGG 0.304218 4_2:-55352480 Msa0608350:CDS
GGATTTGGAGTAGTGGTTCT+TGG 0.304430 4_2:+55350846 None:intergenic
GGCAAGACCCCTAAATAAAA+AGG 0.305952 4_2:-55351241 Msa0608350:intron
TACCAATATTAATGTTGAAT+TGG 0.314212 4_2:+55349376 None:intergenic
CGGTAACATGTTTCTTCATA+TGG 0.323397 4_2:+55351099 None:intergenic
ACCTTCTCTGGAACTGGGAT+TGG 0.327953 4_2:+55350203 None:intergenic
ACCCTAATCGGAATTGAAAA+TGG 0.330518 4_2:-55354217 Msa0608350:exon
ATCAGATCTTTGAAAGTAAA+GGG 0.335407 4_2:-55351139 Msa0608350:intron
AGGGGTTTGCGGACCTTCTC+TGG 0.337968 4_2:+55350191 None:intergenic
AGTGTTCGAGCCTTGAATTT+TGG 0.340321 4_2:+55351805 None:intergenic
AGCACTCTATCTTCAGCCTT+TGG 0.341786 4_2:+55353108 None:intergenic
TACCAATTCAACATTAATAT+TGG 0.343304 4_2:-55349378 Msa0608350:three_prime_UTR
TTTGTGCATTGTTTGGGTTC+TGG 0.344539 4_2:+55350504 None:intergenic
TGCTGATTGTAATCGAGTTT+TGG 0.355077 4_2:+55352540 None:intergenic
CACGGGATAGTCGGTGGTAT+AGG 0.356163 4_2:+55350617 None:intergenic
CTTTGGAGTAAACGCAAGTT+TGG 0.357922 4_2:+55349622 None:intergenic
ACCTTAAACTCTGGTGGTTG+GGG 0.367724 4_2:+55351642 None:intergenic
GGCGGGCCCTTAGTGATGTT+TGG 0.375846 4_2:+55351328 None:intergenic
TAGGGGTATGGGTTAGCCTT+TGG 0.381692 4_2:+55350636 None:intergenic
TTTAATGGCTTGATTCTCTT+GGG 0.383536 4_2:+55352483 None:intergenic
CAAACTCTTGAACTTGTGTA+AGG 0.389176 4_2:+55350171 None:intergenic
GTGGAGGAGGGAACCGGCAG+TGG 0.391148 4_2:-55354192 Msa0608350:CDS
GGCCTGGTCAATGTTAGTTT+CGG 0.392621 4_2:+55351919 None:intergenic
AATTTCATACAAACCCTAAT+CGG 0.393141 4_2:-55354229 Msa0608350:five_prime_UTR
TTAAGATTATGAACTGTTTG+AGG 0.393608 4_2:-55349351 Msa0608350:three_prime_UTR
TTCAAGAACTCTTGAATCCT+TGG 0.398182 4_2:-55349515 Msa0608350:three_prime_UTR
GCAGCGCTCTTCACTCTAGC+AGG 0.405444 4_2:+55351859 None:intergenic
TGAAAAGATTCCTAAATTCA+AGG 0.408870 4_2:-55351262 Msa0608350:CDS
GGCTAAAATGCCAAAATTCA+AGG 0.414969 4_2:-55351815 Msa0608350:CDS
AAAACCGGAGCCCTTTCAAT+TGG 0.416183 4_2:-55350484 Msa0608350:CDS
TGAATCCTTGGCACCTCCCT+AGG 0.418906 4_2:-55349503 Msa0608350:three_prime_UTR
ATGGCGGTGGAGGAGGGAAC+CGG 0.420816 4_2:-55354198 Msa0608350:CDS
CTTAGTGATGTTTGGAGTAG+TGG 0.422991 4_2:+55351336 None:intergenic
GTCTAGTTTACCTTAAACTC+TGG 0.423963 4_2:+55351633 None:intergenic
TGTTTGGGTTCTGGCTTTGG+TGG 0.424354 4_2:+55350513 None:intergenic
CCTTCTCTGGAACTGGGATT+GGG 0.424705 4_2:+55350204 None:intergenic
GTGTGCAGATGGAATGGATT+TGG 0.425293 4_2:+55350831 None:intergenic
TGCTACTAGCATGAGATGAC+TGG 0.425907 4_2:-55349566 Msa0608350:exon
TAGTCGGTGGTATAGGGGTA+TGG 0.426434 4_2:+55350624 None:intergenic
TAAACGCAAGTTTGGTGACT+TGG 0.427137 4_2:+55349630 None:intergenic
ATAGATTAAGGAGAAAGAAA+TGG 0.428455 4_2:-55349994 Msa0608350:intron
GCAGCCACAAAGAGCACGGC+AGG 0.432147 4_2:-55352520 Msa0608350:CDS
TTGATTCTCTTGGGTGAAGT+GGG 0.432158 4_2:+55352492 None:intergenic
TATCAGATCTGATCAAAGTT+TGG 0.434007 4_2:-55349540 Msa0608350:three_prime_UTR
ACCCAAACAATGCACAAAAC+CGG 0.436041 4_2:-55350499 Msa0608350:CDS
AAAGTGAAATTCTTGAGGTT+CGG 0.436411 4_2:+55351079 None:intergenic
CTTGATTCTCTTGGGTGAAG+TGG 0.439963 4_2:+55352491 None:intergenic
TATCAGATCTTTGAAAGTAA+AGG 0.440765 4_2:-55351140 Msa0608350:intron
TTGGGGTGTACTTCTTGGCA+TGG 0.443190 4_2:+55351659 None:intergenic
TTCAACAGATGCTCCTCCTA+TGG 0.448300 4_2:+55352669 None:intergenic
GGATTATTAAAGTTTGGAAC+TGG 0.449864 4_2:+55349781 None:intergenic
CTCATCAGAGGTGTCTCATA+AGG 0.453520 4_2:-55351479 Msa0608350:intron
TTCAAGAAATCGAAGAATCT+AGG 0.453668 4_2:+55354129 None:intergenic
ACAAGAAGAAAGACTTAGAA+TGG 0.453851 4_2:-55350424 Msa0608350:CDS
CTCCAAAGAAGACGGTTCAA+TGG 0.453899 4_2:-55349607 Msa0608350:CDS
AGATTCTTCGATTTCTTGAA+AGG 0.455741 4_2:-55354126 Msa0608350:CDS
ATTGAAAATGGCGGTGGAGG+AGG 0.455855 4_2:-55354205 Msa0608350:exon
GAACTTGTGTAAGGGGTTTG+CGG 0.457924 4_2:+55350180 None:intergenic
GTCTCAAATTCAGGTGACTT+AGG 0.466017 4_2:+55351898 None:intergenic
GTTTGGGTTCTGGCTTTGGT+GGG 0.467184 4_2:+55350514 None:intergenic
GAATTCTACCATTAAGAAAG+AGG 0.468972 4_2:-55352896 Msa0608350:CDS
TTACCTTAAACTCTGGTGGT+TGG 0.469475 4_2:+55351640 None:intergenic
CTTGGAATTGTATTACGTGC+AGG 0.471005 4_2:+55350864 None:intergenic
GATTCTTCGATTTCTTGAAA+GGG 0.471435 4_2:-55354125 Msa0608350:CDS
CTCTCCAATTGAAAGGGCTC+CGG 0.471505 4_2:+55350480 None:intergenic
AGTCATCTCATGCTAGTAGC+AGG 0.472789 4_2:+55349568 None:intergenic
GGAAAGTGAAGCAGCAAGAA+TGG 0.474998 4_2:-55349952 Msa0608350:intron
TGCGGACCTTCTCTGGAACT+GGG 0.475779 4_2:+55350198 None:intergenic
GAGAAAGATGAAGAGAAAGA+AGG 0.482528 4_2:+55354328 None:intergenic
TGGGGTGTACTTCTTGGCAT+GGG 0.485252 4_2:+55351660 None:intergenic
AGTCCCTGCCGTGCTCTTTG+TGG 0.487308 4_2:+55352516 None:intergenic
AGCAGCACCATTTAAATCAA+TGG 0.491115 4_2:-55352113 Msa0608350:CDS
CTCATTAGAAATTGAGCAAG+AGG 0.492046 4_2:-55351289 Msa0608350:CDS
GAGGAGGGAACCGGCAGTGG+TGG 0.495831 4_2:-55354189 Msa0608350:CDS
TTATCATGAGGCAAAGTTTG+AGG 0.496875 4_2:+55352320 None:intergenic
TCAGCCACTGCGGTAGGAGG+TGG 0.498536 4_2:+55351038 None:intergenic
GATCGTTGTGCCACCACTGC+CGG 0.499400 4_2:+55354179 None:intergenic
AAAGAGTGTTGGGCAGTGGC+AGG 0.500844 4_2:+55352053 None:intergenic
CACTACTCCAAACATCACTA+AGG 0.502230 4_2:-55351335 Msa0608350:CDS
ATTACATGGGAAAGAGTGTT+GGG 0.505849 4_2:+55352043 None:intergenic
AACTCTTGAACTTGTGTAAG+GGG 0.507791 4_2:+55350173 None:intergenic
GGAATTTCATCTAGAAACAT+TGG 0.510227 4_2:-55351539 Msa0608350:CDS
ACCTCAGTGTGCAGATGGAA+TGG 0.510925 4_2:+55350825 None:intergenic
GAAGAGCGCTGCTGAGCTTG+AGG 0.515292 4_2:-55351848 Msa0608350:CDS
TTGAAAATGGCGGTGGAGGA+GGG 0.518626 4_2:-55354204 Msa0608350:exon
AGTAGCAGGGCTCGAAGTTG+TGG 0.520954 4_2:+55349582 None:intergenic
CACTAGACTCTCCAATTGAA+AGG 0.523493 4_2:+55350473 None:intergenic
TAGTTTACCTTAAACTCTGG+TGG 0.523532 4_2:+55351636 None:intergenic
AACTCAGAATGAGGACAGAA+AGG 0.523648 4_2:-55352264 Msa0608350:intron
CATTACATGGGAAAGAGTGT+TGG 0.524761 4_2:+55352042 None:intergenic
ACATAATGTGTCTACAGTAA+TGG 0.525509 4_2:+55353155 None:intergenic
AACGAACCTCAGTGTGCAGA+TGG 0.527708 4_2:+55350820 None:intergenic
AGCATTCATGCCTAAAATCA+AGG 0.529753 4_2:-55353187 Msa0608350:CDS
CCTCATGATAAGTCAAAACT+GGG 0.530787 4_2:-55352308 Msa0608350:CDS
ACTTCTTGGCATGGGAGGCA+AGG 0.532126 4_2:+55351668 None:intergenic
TCATCTAGAAACATTGGCTA+GGG 0.534696 4_2:-55351533 Msa0608350:CDS
GGAATTGAAAATGGCGGTGG+AGG 0.535076 4_2:-55354208 Msa0608350:exon
AGTGATGTTTGGAGTAGTGG+AGG 0.535758 4_2:+55351339 None:intergenic
CGGGATAGTCGGTGGTATAG+GGG 0.535841 4_2:+55350619 None:intergenic
TGGGAAAGAGTGTTGGGCAG+TGG 0.536564 4_2:+55352049 None:intergenic
TTGATCATGTGGCAGGAAAG+AGG 0.537091 4_2:-55350729 Msa0608350:intron
AAACTCTTGAACTTGTGTAA+GGG 0.538706 4_2:+55350172 None:intergenic
ATTGATTTAAATGGTGCTGC+TGG 0.541984 4_2:+55352115 None:intergenic
GGCTCGAACACTAAATAAGA+AGG 0.542262 4_2:-55351794 Msa0608350:intron
GAGCATTATTAGCAACGTAA+AGG 0.542280 4_2:-55353064 Msa0608350:CDS
GGAGGAGCATCTGTTGAAGT+AGG 0.544968 4_2:-55352664 Msa0608350:CDS
ATGTTCGTAGGGCTGAACTT+TGG 0.547569 4_2:-55354089 Msa0608350:CDS
ATCAAATTGTGCTCTATCCA+CGG 0.548732 4_2:+55350127 None:intergenic
GTTGCAAAGTGAAATTCTTG+AGG 0.549182 4_2:+55351074 None:intergenic
AAATTCAGGTGACTTAGGCC+TGG 0.549223 4_2:+55351903 None:intergenic
ACATGAGGAAGAAATGCAAA+GGG 0.551348 4_2:-55350448 Msa0608350:CDS
AGAAGGAGGGAAAACTAGAC+AGG 0.551575 4_2:-55352449 Msa0608350:intron
GAAGCAACAGAACTCTAAGA+AGG 0.552900 4_2:-55352575 Msa0608350:CDS
TAGAGCACAATTTGATCAGA+AGG 0.553159 4_2:-55350120 Msa0608350:intron
TTCATCTAGAAACATTGGCT+AGG 0.554100 4_2:-55351534 Msa0608350:CDS
AAACGCAAGTTTGGTGACTT+GGG 0.556435 4_2:+55349631 None:intergenic
TATCAGGATGCGGATGCTGT+TGG 0.556651 4_2:-55352739 Msa0608350:intron
AATCTGATGACGATGTTCGT+AGG 0.557168 4_2:-55354101 Msa0608350:CDS
ATCTGATGACGATGTTCGTA+GGG 0.557737 4_2:-55354100 Msa0608350:CDS
TGATTCTCTTGGGTGAAGTG+GGG 0.558357 4_2:+55352493 None:intergenic
GGTGTACTTCTTGGCATGGG+AGG 0.559489 4_2:+55351663 None:intergenic
CCCAATCCCAGTTCCAGAGA+AGG 0.560804 4_2:-55350204 Msa0608350:CDS
TTTGCAGATAGAGGAAGAGA+AGG 0.561388 4_2:-55349845 Msa0608350:intron
AAATAATTCAACTTCTCTTG+AGG 0.562138 4_2:-55352848 Msa0608350:CDS
TTCATGCCTAAAATCAAGGC+TGG 0.563926 4_2:-55353183 Msa0608350:CDS
AAAGGCTGAAGATAGAGTGC+TGG 0.563928 4_2:-55353106 Msa0608350:CDS
ACTAGACTCTCCAATTGAAA+GGG 0.564195 4_2:+55350474 None:intergenic
TACTAGCAAAACTCAGAATG+AGG 0.564329 4_2:-55352273 Msa0608350:CDS
TGAATTTGAGACAAATCAGC+GGG 0.565017 4_2:-55351887 Msa0608350:CDS
GGTTTAGGTTCAGTGAGATG+AGG 0.565547 4_2:+55351360 None:intergenic
ATAAACACAGCGACATCCAT+AGG 0.565860 4_2:-55352685 Msa0608350:CDS
ATTCTTCGATTTCTTGAAAG+GGG 0.567990 4_2:-55354124 Msa0608350:CDS
ACACTATTACAGAGACACCT+AGG 0.568444 4_2:+55349486 None:intergenic
TTTGCAGAAAGAATTGGAAG+AGG 0.572019 4_2:-55350673 Msa0608350:CDS
ATCGGAATTGAAAATGGCGG+TGG 0.573398 4_2:-55354211 Msa0608350:exon
AGTCGGTGGTATAGGGGTAT+GGG 0.573848 4_2:+55350625 None:intergenic
TGCGTTTACTCCAAAGAAGA+CGG 0.576581 4_2:-55349615 Msa0608350:CDS
TGAGCTTGAGGAAGAAATGA+TGG 0.579227 4_2:-55351836 Msa0608350:CDS
AAATCAGCCACTGCGGTAGG+AGG 0.580750 4_2:+55351035 None:intergenic
CAGCGCTCTTCACTCTAGCA+GGG 0.580928 4_2:+55351860 None:intergenic
GGAAGCAACAAGGGTTCCAA+AGG 0.584855 4_2:-55350652 Msa0608350:CDS
TTCACTTTGCAACAAGTGAG+AGG 0.585436 4_2:-55351064 Msa0608350:CDS
GCTTACAATTGCTTCTCACA+TGG 0.587354 4_2:-55353016 Msa0608350:intron
GAAAATGAGTACTCATAAAG+CGG 0.588932 4_2:-55352713 Msa0608350:CDS
AGGCACTGAAACAGATGAGA+AGG 0.589015 4_2:-55349825 Msa0608350:CDS
TTCTCTTGAGGTATTAAGCG+TGG 0.591684 4_2:-55352836 Msa0608350:intron
GTCATCTCATGCTAGTAGCA+GGG 0.592556 4_2:+55349569 None:intergenic
AATAAATCAGCCACTGCGGT+AGG 0.593305 4_2:+55351032 None:intergenic
ATCAGCAGCCACAAAGAGCA+CGG 0.603559 4_2:-55352524 Msa0608350:CDS
GCTACTAGCATGAGATGACT+GGG 0.606598 4_2:-55349565 Msa0608350:exon
ATGGAATGGATTTGGAGTAG+TGG 0.607859 4_2:+55350839 None:intergenic
TTTGGAACTGGTCTAGCATG+AGG 0.611616 4_2:+55349793 None:intergenic
GACATGAGGAAGAAATGCAA+AGG 0.612700 4_2:-55350449 Msa0608350:CDS
CTGAATTTGAGACAAATCAG+CGG 0.614339 4_2:-55351888 Msa0608350:CDS
AGTGGCTGATTTATTTGACA+AGG 0.617787 4_2:-55351024 Msa0608350:intron
GAAAGAGAAGAAACTGTACA+TGG 0.621766 4_2:-55350700 Msa0608350:CDS
AATGTAATTGGAGGGAAGTG+TGG 0.623373 4_2:+55354288 None:intergenic
CACTATTACAGAGACACCTA+GGG 0.627559 4_2:+55349487 None:intergenic
GGAGAGTCTAGTGAGACATG+AGG 0.627749 4_2:-55350463 Msa0608350:CDS
ATGCTTACGAGAAGGAGCAT+AGG 0.631193 4_2:+55354050 None:intergenic
AACCGAAACTAACATTGACC+AGG 0.631638 4_2:-55351921 Msa0608350:CDS
TTGGAACTGGTCTAGCATGA+GGG 0.632293 4_2:+55349794 None:intergenic
ACTACTCCAAACATCACTAA+GGG 0.632859 4_2:-55351334 Msa0608350:CDS
AATTGGAAGAGGAAGCAACA+AGG 0.634739 4_2:-55350662 Msa0608350:CDS
ATTGGAAGAGGAAGCAACAA+GGG 0.636751 4_2:-55350661 Msa0608350:CDS
AAAGGAAGATGATAGAGCCG+AGG 0.638203 4_2:-55353046 Msa0608350:CDS
AGCTTCAAAAGCCTCATCAG+AGG 0.640671 4_2:-55351491 Msa0608350:CDS
AGACACCTAGGGAGGTGCCA+AGG 0.645124 4_2:+55349498 None:intergenic
CTTATGAGACACCTCTGATG+AGG 0.646858 4_2:+55351480 None:intergenic
ACATTTGAATCATCGAGCCG+TGG 0.648390 4_2:-55350144 Msa0608350:CDS
CAGCCACAAAGAGCACGGCA+GGG 0.651204 4_2:-55352519 Msa0608350:CDS
TTGTACCACGGGATAGTCGG+TGG 0.652413 4_2:+55350611 None:intergenic
TGAAGCTGACAATATGCCAA+AGG 0.653084 4_2:-55353124 Msa0608350:CDS
TCAGATCTTTGAAAGTAAAG+GGG 0.653685 4_2:-55351138 Msa0608350:intron
TGTTTGTGTAATGTAATTGG+AGG 0.662243 4_2:+55354279 None:intergenic
AACACAGCGACATCCATAGG+AGG 0.663915 4_2:-55352682 Msa0608350:CDS
AGAAGGAGCATAGGATAAAG+CGG 0.669149 4_2:+55354059 None:intergenic
GTCAAATAAATCAGCCACTG+CGG 0.672423 4_2:+55351028 None:intergenic
GTTTCCACCTCCTACCGCAG+TGG 0.677524 4_2:-55351042 Msa0608350:CDS
AGAGGATGCACCATGCTGCG+AGG 0.678833 4_2:-55352878 Msa0608350:CDS
ACGTTGCTAATAATGCTCTG+TGG 0.682607 4_2:+55353069 None:intergenic
CTATACCACCGACTATCCCG+TGG 0.684644 4_2:-55350616 Msa0608350:intron
GAAACAGATGAGAAGGACAA+TGG 0.686536 4_2:-55349818 Msa0608350:CDS
GTTTGTGTAATGTAATTGGA+GGG 0.686668 4_2:+55354280 None:intergenic
TATTACAGAGACACCTAGGG+AGG 0.700064 4_2:+55349490 None:intergenic
CTAATCGGAATTGAAAATGG+CGG 0.706738 4_2:-55354214 Msa0608350:exon
GGTATACAAACGATACAGAG+AGG 0.718065 4_2:-55349973 Msa0608350:CDS
TCCATTCCATCTGCACACTG+AGG 0.724592 4_2:-55350826 Msa0608350:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATTAATTTCATAATTA+GGG - chr4_2:55349639-55349658 Msa0608350:CDS 10.0%
!!! TAATTAAATTGTTATTTACT+CGG - chr4_2:55351896-55351915 Msa0608350:CDS 10.0%
!!! AATTATGAAATTAATTTGTC+AGG + chr4_2:55349638-55349657 None:intergenic 15.0%
!! GACAAATTAATTTCATAATT+AGG - chr4_2:55349638-55349657 Msa0608350:CDS 15.0%
!! TAACAATTTGATTAAGAAAT+AGG - chr4_2:55350098-55350117 Msa0608350:intron 15.0%
!!! TTTTAATTGTTTCTATACAA+AGG - chr4_2:55350393-55350412 Msa0608350:CDS 15.0%
!!! TTTAATTGTTTCTATACAAA+GGG - chr4_2:55350394-55350413 Msa0608350:CDS 15.0%
!! TAAAAAACATAAGTTACTAA+TGG + chr4_2:55352229-55352248 None:intergenic 15.0%
!! TATAAAAATTAATCGAGAAT+TGG + chr4_2:55353622-55353641 None:intergenic 15.0%
!!! CGATTAATTTTTATAGATTA+AGG - chr4_2:55353627-55353646 Msa0608350:intron 15.0%
!! AATTGTAAGATAGTAGAATT+GGG - chr4_2:55349679-55349698 Msa0608350:intron 20.0%
!!! AAATTTGGAATTTTTATGTG+TGG - chr4_2:55349755-55349774 Msa0608350:intron 20.0%
!!! AGAAGTTGAATTATTTTCTT+CGG + chr4_2:55350781-55350800 None:intergenic 20.0%
!! ATAATATCTATCTATCTATC+AGG - chr4_2:55350878-55350897 Msa0608350:CDS 20.0%
!!! TTCTAATTTTTGCCTTTTAA+TGG + chr4_2:55351168-55351187 None:intergenic 20.0%
!! ATTAAAAGGCAAAAATTAGA+AGG - chr4_2:55351167-55351186 Msa0608350:intron 20.0%
!!! TGATTGAACTTTTTATGTAA+AGG - chr4_2:55351469-55351488 Msa0608350:intron 20.0%
!! AAAAATATCTCTCTATTCTT+TGG + chr4_2:55352025-55352044 None:intergenic 20.0%
!!! ATAAGGTATTTTTTACTAAC+AGG - chr4_2:55352171-55352190 Msa0608350:intron 20.0%
!!! CTTATGTTTTTTATTGAAAC+AGG - chr4_2:55352236-55352255 Msa0608350:intron 20.0%
!!! ACTATTACCTTTTTATTTAG+GGG + chr4_2:55352402-55352421 None:intergenic 20.0%
!!! CACTATTACCTTTTTATTTA+GGG + chr4_2:55352403-55352422 None:intergenic 20.0%
!!! TCACTATTACCTTTTTATTT+AGG + chr4_2:55352404-55352423 None:intergenic 20.0%
!! ATCTGAAGAAAAAAAAACTT+GGG + chr4_2:55352667-55352686 None:intergenic 20.0%
!! AATCTGAAGAAAAAAAAACT+TGG + chr4_2:55352668-55352687 None:intergenic 20.0%
!! ATTCAGATGAAAAGAAATTT+AGG + chr4_2:55353395-55353414 None:intergenic 20.0%
!!! TTTAAAGTTGAAGACAAAAA+CGG + chr4_2:55353552-55353571 None:intergenic 20.0%
!! CAAAAAGGATTATTAAAGTT+TGG + chr4_2:55353861-55353880 None:intergenic 20.0%
!! TATTCAAAAGATGAAAAATG+GGG + chr4_2:55353928-55353947 None:intergenic 20.0%
!! GTATTCAAAAGATGAAAAAT+GGG + chr4_2:55353929-55353948 None:intergenic 20.0%
!! AGTATTCAAAAGATGAAAAA+TGG + chr4_2:55353930-55353949 None:intergenic 20.0%
!! TACCAATTCAACATTAATAT+TGG - chr4_2:55354255-55354274 Msa0608350:five_prime_UTR 20.0%
!! TACCAATATTAATGTTGAAT+TGG + chr4_2:55354260-55354279 None:intergenic 20.0%
!! TCAAGTATCATAAACTTATA+TGG + chr4_2:55354333-55354352 None:intergenic 20.0%
!!! CTTGAAAATTATGATTCTTT+TGG - chr4_2:55354348-55354367 Msa0608350:five_prime_UTR 20.0%
! AATTTCATACAAACCCTAAT+CGG - chr4_2:55349404-55349423 Msa0608350:three_prime_UTR 25.0%
! CAATTGTAAGATAGTAGAAT+TGG - chr4_2:55349678-55349697 Msa0608350:intron 25.0%
! ATTGTAAGATAGTAGAATTG+GGG - chr4_2:55349680-55349699 Msa0608350:intron 25.0%
!!! TTTCAGAATTTTTGTTGCTT+AGG - chr4_2:55349930-55349949 Msa0608350:intron 25.0%
!!! TTCAGAATTTTTGTTGCTTA+GGG - chr4_2:55349931-55349950 Msa0608350:intron 25.0%
!!! TTTGATTTTGACTTGGTAAT+TGG - chr4_2:55349964-55349983 Msa0608350:CDS 25.0%
!!! TTGATTTTGACTTGGTAATT+GGG - chr4_2:55349965-55349984 Msa0608350:CDS 25.0%
! CTCTATATGATTCATACTAT+AGG - chr4_2:55350026-55350045 Msa0608350:intron 25.0%
! AACTGTGTTTCAATTATGTT+AGG - chr4_2:55350049-55350068 Msa0608350:intron 25.0%
! AAATAGGATACAATTTCTCA+AGG - chr4_2:55350114-55350133 Msa0608350:intron 25.0%
! AATAGGATACAATTTCTCAA+GGG - chr4_2:55350115-55350134 Msa0608350:intron 25.0%
! TAAAGTTAGTTAGATAGTTG+AGG + chr4_2:55350203-55350222 None:intergenic 25.0%
!!! ATGAAACAAATTGCTTTTCA+AGG - chr4_2:55350295-55350314 Msa0608350:intron 25.0%
!!! ATCCTCATAGTTTTATGTTT+CGG - chr4_2:55350324-55350343 Msa0608350:intron 25.0%
! TGTTGGGTAATTACAAAAAA+TGG + chr4_2:55350655-55350674 None:intergenic 25.0%
! TTTGTAATTACCCAACAATT+TGG - chr4_2:55350658-55350677 Msa0608350:CDS 25.0%
! AAATAATTCAACTTCTCTTG+AGG - chr4_2:55350785-55350804 Msa0608350:intron 25.0%
! AGACAATAGTAATAAAAACC+AGG + chr4_2:55350857-55350876 None:intergenic 25.0%
! ATAGCTAAAGATTGAAACAA+AGG + chr4_2:55351438-55351457 None:intergenic 25.0%
!!! ATTTCTGCCATTGATTTAAA+TGG + chr4_2:55351530-55351549 None:intergenic 25.0%
! AATGTGATTGATCATTACAT+GGG + chr4_2:55351606-55351625 None:intergenic 25.0%
! TGCAACAAAAATGTAAAACA+GGG + chr4_2:55351629-55351648 None:intergenic 25.0%
! TGAAAAGATTCCTAAATTCA+AGG - chr4_2:55352371-55352390 Msa0608350:intron 25.0%
! AATGACAGAATGAAAATCTT+AGG + chr4_2:55352452-55352471 None:intergenic 25.0%
! GATCTGATAGATATACTATT+AGG + chr4_2:55352482-55352501 None:intergenic 25.0%
!! TATCAGATCTTTGAAAGTAA+AGG - chr4_2:55352493-55352512 Msa0608350:CDS 25.0%
!! ATCAGATCTTTGAAAGTAAA+GGG - chr4_2:55352494-55352513 Msa0608350:CDS 25.0%
! AATGTTGGTATTAGAAGAAT+TGG + chr4_2:55352883-55352902 None:intergenic 25.0%
! CAAAAGAAATTTAAACAACC+AGG - chr4_2:55353316-55353335 Msa0608350:intron 25.0%
! ATAGATTAAGGAGAAAGAAA+TGG - chr4_2:55353639-55353658 Msa0608350:intron 25.0%
! TTAAGATTATGAACTGTTTG+AGG - chr4_2:55354282-55354301 Msa0608350:five_prime_UTR 25.0%
GTTTGTGTAATGTAATTGGA+GGG + chr4_2:55349356-55349375 None:intergenic 30.0%
TGTTTGTGTAATGTAATTGG+AGG + chr4_2:55349357-55349376 None:intergenic 30.0%
TTCAAGAAATCGAAGAATCT+AGG + chr4_2:55349507-55349526 None:intergenic 30.0%
AGATTCTTCGATTTCTTGAA+AGG - chr4_2:55349507-55349526 Msa0608350:three_prime_UTR 30.0%
GATTCTTCGATTTCTTGAAA+GGG - chr4_2:55349508-55349527 Msa0608350:three_prime_UTR 30.0%
ATTCTTCGATTTCTTGAAAG+GGG - chr4_2:55349509-55349528 Msa0608350:three_prime_UTR 30.0%
TTGTAAGATAGTAGAATTGG+GGG - chr4_2:55349681-55349700 Msa0608350:intron 30.0%
TTGTCAGAATGAAATTGTGA+AGG - chr4_2:55349802-55349821 Msa0608350:CDS 30.0%
TTCTTCTTTCATTCACTACT+TGG - chr4_2:55349882-55349901 Msa0608350:intron 30.0%
TCTTCTTTCATTCACTACTT+GGG - chr4_2:55349883-55349902 Msa0608350:intron 30.0%
!!! GTGAAGTTTTGATTTTGACT+TGG - chr4_2:55349957-55349976 Msa0608350:CDS 30.0%
TTGTTTCAAGGCTAATTGTA+AGG + chr4_2:55350180-55350199 None:intergenic 30.0%
CATTGATAAACAAAGTTCTC+TGG + chr4_2:55350350-55350369 None:intergenic 30.0%
TTCTATACAAAGGGTTTACT+TGG - chr4_2:55350403-55350422 Msa0608350:CDS 30.0%
ACATAATGTGTCTACAGTAA+TGG + chr4_2:55350481-55350500 None:intergenic 30.0%
! AATTGTAAGCTTTTCTTCCT+CGG + chr4_2:55350607-55350626 None:intergenic 30.0%
TAACCAAGAACCAAATTGTT+GGG + chr4_2:55350671-55350690 None:intergenic 30.0%
ATAACCAAGAACCAAATTGT+TGG + chr4_2:55350672-55350691 None:intergenic 30.0%
ATTTGTGAACTATGAGCAAA+TGG + chr4_2:55350700-55350719 None:intergenic 30.0%
GAATTCTACCATTAAGAAAG+AGG - chr4_2:55350737-55350756 Msa0608350:intron 30.0%
! GTATTAAGCGTGGTAATTTT+TGG - chr4_2:55350807-55350826 Msa0608350:intron 30.0%
AGGTGAAACAAGTTAGTTAT+GGG + chr4_2:55350837-55350856 None:intergenic 30.0%
GAAAATGAGTACTCATAAAG+CGG - chr4_2:55350920-55350939 Msa0608350:intron 30.0%
!! TAATCGAGTTTTGGTATTTG+TGG + chr4_2:55351087-55351106 None:intergenic 30.0%
TTTAATGGCTTGATTCTCTT+GGG + chr4_2:55351153-55351172 None:intergenic 30.0%
! TTTTAATGGCTTGATTCTCT+TGG + chr4_2:55351154-55351173 None:intergenic 30.0%
AAGAGAATCAAGCCATTAAA+AGG - chr4_2:55351153-55351172 Msa0608350:intron 30.0%
AAAAGGCAAAAATTAGAAGG+AGG - chr4_2:55351170-55351189 Msa0608350:intron 30.0%
AAAGGCAAAAATTAGAAGGA+GGG - chr4_2:55351171-55351190 Msa0608350:intron 30.0%
CTAGACAGGTAATTGTTAAA+AGG - chr4_2:55351198-55351217 Msa0608350:intron 30.0%
GCTTGAATAGTTAAAGTTTG+AGG + chr4_2:55351254-55351273 None:intergenic 30.0%
GAATGTGATTGATCATTACA+TGG + chr4_2:55351607-55351626 None:intergenic 30.0%
GTGCAACAAAAATGTAAAAC+AGG + chr4_2:55351630-55351649 None:intergenic 30.0%
! TTTACATTTTTGTTGCACCT+TGG - chr4_2:55351632-55351651 Msa0608350:intron 30.0%
! TTACATTTTTGTTGCACCTT+GGG - chr4_2:55351633-55351652 Msa0608350:intron 30.0%
! TGTTATTTACTCGGTCAAAT+AGG - chr4_2:55351905-55351924 Msa0608350:CDS 30.0%
! CTAACATTTCCATTTTCATC+AGG - chr4_2:55352073-55352092 Msa0608350:CDS 30.0%
GATGAAATTCCTGATGAAAA+TGG + chr4_2:55352085-55352104 None:intergenic 30.0%
GGAATTTCATCTAGAAACAT+TGG - chr4_2:55352094-55352113 Msa0608350:CDS 30.0%
CAGAATGAAAATCTTAGGAT+TGG + chr4_2:55352447-55352466 None:intergenic 30.0%
! TCAGATCTTTGAAAGTAAAG+GGG - chr4_2:55352495-55352514 Msa0608350:CDS 30.0%
TTTGAAAGTAAAGGGGATAT+TGG - chr4_2:55352502-55352521 Msa0608350:CDS 30.0%
AAAGTGAAATTCTTGAGGTT+CGG + chr4_2:55352557-55352576 None:intergenic 30.0%
! AAATGAACACTTTTGTACCA+CGG + chr4_2:55353037-55353056 None:intergenic 30.0%
!!! TGGTACAAAAGTGTTCATTT+TGG - chr4_2:55353037-55353056 Msa0608350:CDS 30.0%
!!! TACAAAAGTGTTCATTTTGG+TGG - chr4_2:55353040-55353059 Msa0608350:CDS 30.0%
ACAAGAAGAAAGACTTAGAA+TGG - chr4_2:55353209-55353228 Msa0608350:intron 30.0%
AGCACAGATGAGAAAATTTA+AGG - chr4_2:55353242-55353261 Msa0608350:intron 30.0%
! ATTGCTCACTCTTTTAATAC+TGG + chr4_2:55353273-55353292 None:intergenic 30.0%
TCGTAAAGTAAAAAAAGTCC+TGG + chr4_2:55353337-55353356 None:intergenic 30.0%
AAACTCTTGAACTTGTGTAA+GGG + chr4_2:55353464-55353483 None:intergenic 30.0%
AAATGATACAAGTAGATAGC+TGG - chr4_2:55353569-55353588 Msa0608350:intron 30.0%
! GGATTATTAAAGTTTGGAAC+TGG + chr4_2:55353855-55353874 None:intergenic 30.0%
GAAAAATGGGGATATAGTTT+AGG + chr4_2:55353916-55353935 None:intergenic 30.0%
TATCAGATCTGATCAAAGTT+TGG - chr4_2:55354093-55354112 Msa0608350:CDS 30.0%
GAGAAAGATGAAGAGAAAGA+AGG + chr4_2:55349308-55349327 None:intergenic 35.0%
GCGTGTTTGTGTAATGTAAT+TGG + chr4_2:55349360-55349379 None:intergenic 35.0%
ACCCTAATCGGAATTGAAAA+TGG - chr4_2:55349416-55349435 Msa0608350:three_prime_UTR 35.0%
!! GCCATTTTCAATTCCGATTA+GGG + chr4_2:55349420-55349439 None:intergenic 35.0%
CTAATCGGAATTGAAAATGG+CGG - chr4_2:55349419-55349438 Msa0608350:three_prime_UTR 35.0%
TAGTAGAATTGGGGGAATAT+AGG - chr4_2:55349689-55349708 Msa0608350:intron 35.0%
AGTAGAATTGGGGGAATATA+GGG - chr4_2:55349690-55349709 Msa0608350:intron 35.0%
! GGTTTTCTTCTTTGAATCAC+TGG - chr4_2:55349711-55349730 Msa0608350:intron 35.0%
TGTGAAGATCGTTGGAAATT+TGG - chr4_2:55349740-55349759 Msa0608350:intron 35.0%
!! AGAATTTTTGTTGCTTAGGG+TGG - chr4_2:55349934-55349953 Msa0608350:intron 35.0%
!! GAATTTTTGTTGCTTAGGGT+GGG - chr4_2:55349935-55349954 Msa0608350:intron 35.0%
! AGATAGTTGAGGTTGTTTCA+AGG + chr4_2:55350192-55350211 None:intergenic 35.0%
!! CTAGTGCAACGTAATTTGTT+AGG + chr4_2:55350259-55350278 None:intergenic 35.0%
ATACAAAGGGTTTACTTGGT+CGG - chr4_2:55350407-55350426 Msa0608350:CDS 35.0%
AGCATTCATGCCTAAAATCA+AGG - chr4_2:55350446-55350465 Msa0608350:CDS 35.0%
GAGCATTATTAGCAACGTAA+AGG - chr4_2:55350569-55350588 Msa0608350:intron 35.0%
!! TTACCCAACAATTTGGTTCT+TGG - chr4_2:55350665-55350684 Msa0608350:CDS 35.0%
GGTGAAACAAGTTAGTTATG+GGG + chr4_2:55350836-55350855 None:intergenic 35.0%
CAGGTGAAACAAGTTAGTTA+TGG + chr4_2:55350838-55350857 None:intergenic 35.0%
!! CATAACTAACTTGTTTCACC+TGG - chr4_2:55350836-55350855 Msa0608350:CDS 35.0%
TCTATCTATCTATCAGGATG+CGG - chr4_2:55350884-55350903 Msa0608350:CDS 35.0%
!!! TTTTTTCGCAATGCTGGTTT+TGG + chr4_2:55351011-55351030 None:intergenic 35.0%
!!! TTGACATTTTTTCGCAATGC+TGG + chr4_2:55351017-55351036 None:intergenic 35.0%
!! TGCTGATTGTAATCGAGTTT+TGG + chr4_2:55351096-55351115 None:intergenic 35.0%
! TAAAAGGTCTCTTCGTTTTC+TGG - chr4_2:55351214-55351233 Msa0608350:intron 35.0%
TTATCATGAGGCAAAGTTTG+AGG + chr4_2:55351316-55351335 None:intergenic 35.0%
CCTCATGATAAGTCAAAACT+GGG - chr4_2:55351325-55351344 Msa0608350:CDS 35.0%
TACTAGCAAAACTCAGAATG+AGG - chr4_2:55351360-55351379 Msa0608350:CDS 35.0%
!! ATTGATTTAAATGGTGCTGC+TGG + chr4_2:55351521-55351540 None:intergenic 35.0%
AGCAGCACCATTTAAATCAA+TGG - chr4_2:55351520-55351539 Msa0608350:CDS 35.0%
!! ATTACATGGGAAAGAGTGTT+GGG + chr4_2:55351593-55351612 None:intergenic 35.0%
! TACATTTTTGTTGCACCTTG+GGG - chr4_2:55351634-55351653 Msa0608350:intron 35.0%
!! TTTCGGTTTTGTCTGTATCA+AGG + chr4_2:55351700-55351719 None:intergenic 35.0%
! CTGAATTTGAGACAAATCAG+CGG - chr4_2:55351745-55351764 Msa0608350:intron 35.0%
! TGAATTTGAGACAAATCAGC+GGG - chr4_2:55351746-55351765 Msa0608350:intron 35.0%
GGCTAAAATGCCAAAATTCA+AGG - chr4_2:55351818-55351837 Msa0608350:CDS 35.0%
TAGTTTACCTTAAACTCTGG+TGG + chr4_2:55352000-55352019 None:intergenic 35.0%
! GTCTAGTTTACCTTAAACTC+TGG + chr4_2:55352003-55352022 None:intergenic 35.0%
! TTCATCTAGAAACATTGGCT+AGG - chr4_2:55352099-55352118 Msa0608350:CDS 35.0%
! TCATCTAGAAACATTGGCTA+GGG - chr4_2:55352100-55352119 Msa0608350:CDS 35.0%
ACTACTCCAAACATCACTAA+GGG - chr4_2:55352299-55352318 Msa0608350:CDS 35.0%
! TCTAATGAGCTTTTCACTGT+TGG + chr4_2:55352333-55352352 None:intergenic 35.0%
CTCATTAGAAATTGAGCAAG+AGG - chr4_2:55352344-55352363 Msa0608350:intron 35.0%
CGGTAACATGTTTCTTCATA+TGG + chr4_2:55352537-55352556 None:intergenic 35.0%
GTTGCAAAGTGAAATTCTTG+AGG + chr4_2:55352562-55352581 None:intergenic 35.0%
! AGTGGCTGATTTATTTGACA+AGG - chr4_2:55352609-55352628 Msa0608350:CDS 35.0%
! GCTGATTTATTTGACAAGGT+GGG - chr4_2:55352613-55352632 Msa0608350:CDS 35.0%
AGAAAAAAAAACTTGGGAGC+TGG + chr4_2:55352661-55352680 None:intergenic 35.0%
CTTCAAAGAAAGCTGCAAAA+TGG + chr4_2:55352743-55352762 None:intergenic 35.0%
TGACAGGTCAATACATTGAT+TGG - chr4_2:55352857-55352876 Msa0608350:CDS 35.0%
TACCAACATTCTTGATCATG+TGG - chr4_2:55352893-55352912 Msa0608350:CDS 35.0%
GAAAGAGAAGAAACTGTACA+TGG - chr4_2:55352933-55352952 Msa0608350:intron 35.0%
! GGAACTTTTGCAGAAAGAAT+TGG - chr4_2:55352954-55352973 Msa0608350:intron 35.0%
TTTGCAGAAAGAATTGGAAG+AGG - chr4_2:55352960-55352979 Msa0608350:intron 35.0%
! AATGAACACTTTTGTACCAC+GGG + chr4_2:55353036-55353055 None:intergenic 35.0%
ACTAGACTCTCCAATTGAAA+GGG + chr4_2:55353162-55353181 None:intergenic 35.0%
ACATGAGGAAGAAATGCAAA+GGG - chr4_2:55353185-55353204 Msa0608350:CDS 35.0%
AACTCTTGAACTTGTGTAAG+GGG + chr4_2:55353463-55353482 None:intergenic 35.0%
CAAACTCTTGAACTTGTGTA+AGG + chr4_2:55353465-55353484 None:intergenic 35.0%
ATCAAATTGTGCTCTATCCA+CGG + chr4_2:55353509-55353528 None:intergenic 35.0%
TAGAGCACAATTTGATCAGA+AGG - chr4_2:55353513-55353532 Msa0608350:intron 35.0%
!! ACTTACTTTTGTGGGCAAAA+AGG + chr4_2:55353876-55353895 None:intergenic 35.0%
!! GATGCATGACTTACTTTTGT+GGG + chr4_2:55353884-55353903 None:intergenic 35.0%
!! AGATGCATGACTTACTTTTG+TGG + chr4_2:55353885-55353904 None:intergenic 35.0%
TTCAAGAACTCTTGAATCCT+TGG - chr4_2:55354118-55354137 Msa0608350:CDS 35.0%
AATGTAATTGGAGGGAAGTG+TGG + chr4_2:55349348-55349367 None:intergenic 40.0%
!! CGCCATTTTCAATTCCGATT+AGG + chr4_2:55349421-55349440 None:intergenic 40.0%
! AATCTGATGACGATGTTCGT+AGG - chr4_2:55349532-55349551 Msa0608350:three_prime_UTR 40.0%
! ATCTGATGACGATGTTCGTA+GGG - chr4_2:55349533-55349552 Msa0608350:three_prime_UTR 40.0%
! AGAAGGAGCATAGGATAAAG+CGG + chr4_2:55349577-55349596 None:intergenic 40.0%
AGAGAATGATGCTTACGAGA+AGG + chr4_2:55349594-55349613 None:intergenic 40.0%
GGTTTGAATGTGAAGATCGT+TGG - chr4_2:55349732-55349751 Msa0608350:intron 40.0%
TGTGAAGGAGACAGTGAATT+AGG - chr4_2:55349817-55349836 Msa0608350:CDS 40.0%
GTGAAGGAGACAGTGAATTA+GGG - chr4_2:55349818-55349837 Msa0608350:CDS 40.0%
TATGTTAGGAACCCAAGACT+TGG - chr4_2:55350063-55350082 Msa0608350:intron 40.0%
TTCTTCCGAATCCAAGTCTT+GGG + chr4_2:55350077-55350096 None:intergenic 40.0%
TTTCTTCCGAATCCAAGTCT+TGG + chr4_2:55350078-55350097 None:intergenic 40.0%
AGCAGTGACACTATTGTGTA+GGG + chr4_2:55350145-55350164 None:intergenic 40.0%
GCACTAGCACTTAGAATACA+TGG - chr4_2:55350272-55350291 Msa0608350:intron 40.0%
GGCCGAAACATAAAACTATG+AGG + chr4_2:55350329-55350348 None:intergenic 40.0%
TTCATGCCTAAAATCAAGGC+TGG - chr4_2:55350450-55350469 Msa0608350:CDS 40.0%
! GATCTACCAGCCTTGATTTT+AGG + chr4_2:55350459-55350478 None:intergenic 40.0%
TGAAGCTGACAATATGCCAA+AGG - chr4_2:55350509-55350528 Msa0608350:CDS 40.0%
ACGTTGCTAATAATGCTCTG+TGG + chr4_2:55350567-55350586 None:intergenic 40.0%
GCTTACAATTGCTTCTCACA+TGG - chr4_2:55350617-55350636 Msa0608350:CDS 40.0%
TGGTGCATCCTCTTTCTTAA+TGG + chr4_2:55350748-55350767 None:intergenic 40.0%
! TTCTCTTGAGGTATTAAGCG+TGG - chr4_2:55350797-55350816 Msa0608350:intron 40.0%
ATAAACACAGCGACATCCAT+AGG - chr4_2:55350948-55350967 Msa0608350:intron 40.0%
! GAAGCAACAGAACTCTAAGA+AGG - chr4_2:55351058-55351077 Msa0608350:CDS 40.0%
TTGATTCTCTTGGGTGAAGT+GGG + chr4_2:55351144-55351163 None:intergenic 40.0%
!! GTCTCTTCGTTTTCTGGTAT+TGG - chr4_2:55351220-55351239 Msa0608350:intron 40.0%
GCCTCATGATAAGTCAAAAC+TGG - chr4_2:55351324-55351343 Msa0608350:CDS 40.0%
!!! CCCAGTTTTGACTTATCATG+AGG + chr4_2:55351328-55351347 None:intergenic 40.0%
AACTCAGAATGAGGACAGAA+AGG - chr4_2:55351369-55351388 Msa0608350:CDS 40.0%
! CATTACATGGGAAAGAGTGT+TGG + chr4_2:55351594-55351613 None:intergenic 40.0%
AACCGAAACTAACATTGACC+AGG - chr4_2:55351712-55351731 Msa0608350:intron 40.0%
GTCTCAAATTCAGGTGACTT+AGG + chr4_2:55351738-55351757 None:intergenic 40.0%
!! CGCTGATTTGTCTCAAATTC+AGG + chr4_2:55351747-55351766 None:intergenic 40.0%
TGAGCTTGAGGAAGAAATGA+TGG - chr4_2:55351797-55351816 Msa0608350:CDS 40.0%
! AGTGTTCGAGCCTTGAATTT+TGG + chr4_2:55351831-55351850 None:intergenic 40.0%
GGCTCGAACACTAAATAAGA+AGG - chr4_2:55351839-55351858 Msa0608350:CDS 40.0%
TACCTTAAACTCTGGTGGTT+GGG + chr4_2:55351995-55352014 None:intergenic 40.0%
TTACCTTAAACTCTGGTGGT+TGG + chr4_2:55351996-55352015 None:intergenic 40.0%
! CTTAGTGATGTTTGGAGTAG+TGG + chr4_2:55352300-55352319 None:intergenic 40.0%
CACTACTCCAAACATCACTA+AGG - chr4_2:55352298-55352317 Msa0608350:CDS 40.0%
! ATGAGCTTTTCACTGTTGGT+GGG + chr4_2:55352329-55352348 None:intergenic 40.0%
! AATGAGCTTTTCACTGTTGG+TGG + chr4_2:55352330-55352349 None:intergenic 40.0%
GGCAAGACCCCTAAATAAAA+AGG - chr4_2:55352392-55352411 Msa0608350:intron 40.0%
TTCACTTTGCAACAAGTGAG+AGG - chr4_2:55352569-55352588 Msa0608350:CDS 40.0%
GTCAAATAAATCAGCCACTG+CGG + chr4_2:55352608-55352627 None:intergenic 40.0%
! GGCTGATTTATTTGACAAGG+TGG - chr4_2:55352612-55352631 Msa0608350:CDS 40.0%
GATTTATTTGACAAGGTGGG+TGG - chr4_2:55352616-55352635 Msa0608350:CDS 40.0%
CTTGGAATTGTATTACGTGC+AGG + chr4_2:55352772-55352791 None:intergenic 40.0%
! ATGGAATGGATTTGGAGTAG+TGG + chr4_2:55352797-55352816 None:intergenic 40.0%
GAGGTTCGTTTCTTTCCATT+TGG - chr4_2:55352826-55352845 Msa0608350:intron 40.0%
CCTGTCAAGTTTCAACCAAA+TGG + chr4_2:55352844-55352863 None:intergenic 40.0%
CCATTTGGTTGAAACTTGAC+AGG - chr4_2:55352841-55352860 Msa0608350:CDS 40.0%
TGCCACATGATCAAGAATGT+TGG + chr4_2:55352898-55352917 None:intergenic 40.0%
AACATTCTTGATCATGTGGC+AGG - chr4_2:55352897-55352916 Msa0608350:CDS 40.0%
AATTGGAAGAGGAAGCAACA+AGG - chr4_2:55352971-55352990 Msa0608350:intron 40.0%
ATTGGAAGAGGAAGCAACAA+GGG - chr4_2:55352972-55352991 Msa0608350:intron 40.0%
! TTTGTGCATTGTTTGGGTTC+TGG + chr4_2:55353132-55353151 None:intergenic 40.0%
ACCCAAACAATGCACAAAAC+CGG - chr4_2:55353134-55353153 Msa0608350:CDS 40.0%
!! TCCGGTTTTGTGCATTGTTT+GGG + chr4_2:55353138-55353157 None:intergenic 40.0%
CACTAGACTCTCCAATTGAA+AGG + chr4_2:55353163-55353182 None:intergenic 40.0%
GACATGAGGAAGAAATGCAA+AGG - chr4_2:55353184-55353203 Msa0608350:CDS 40.0%
TTCATCTGAATGTACCTTGC+AGG - chr4_2:55353404-55353423 Msa0608350:intron 40.0%
TCATCTGAATGTACCTTGCA+GGG - chr4_2:55353405-55353424 Msa0608350:intron 40.0%
GGTATACAAACGATACAGAG+AGG - chr4_2:55353660-55353679 Msa0608350:intron 40.0%
TGAACGAACTTTGCAGATAG+AGG - chr4_2:55353779-55353798 Msa0608350:intron 40.0%
TTTGCAGATAGAGGAAGAGA+AGG - chr4_2:55353788-55353807 Msa0608350:intron 40.0%
GAAACAGATGAGAAGGACAA+TGG - chr4_2:55353815-55353834 Msa0608350:intron 40.0%
! AAACGCAAGTTTGGTGACTT+GGG + chr4_2:55354005-55354024 None:intergenic 40.0%
! TAAACGCAAGTTTGGTGACT+TGG + chr4_2:55354006-55354025 None:intergenic 40.0%
!! CTTTGGAGTAAACGCAAGTT+TGG + chr4_2:55354014-55354033 None:intergenic 40.0%
TGCGTTTACTCCAAAGAAGA+CGG - chr4_2:55354018-55354037 Msa0608350:intron 40.0%
AACCATTGAACCGTCTTCTT+TGG + chr4_2:55354031-55354050 None:intergenic 40.0%
CACTATTACAGAGACACCTA+GGG + chr4_2:55354149-55354168 None:intergenic 40.0%
ACACTATTACAGAGACACCT+AGG + chr4_2:55354150-55354169 None:intergenic 40.0%
ATCGGAATTGAAAATGGCGG+TGG - chr4_2:55349422-55349441 Msa0608350:three_prime_UTR 45.0%
ATGTTCGTAGGGCTGAACTT+TGG - chr4_2:55349544-55349563 Msa0608350:three_prime_UTR 45.0%
! ATGCTTACGAGAAGGAGCAT+AGG + chr4_2:55349586-55349605 None:intergenic 45.0%
AGGAACCCAAGACTTGGATT+CGG - chr4_2:55350069-55350088 Msa0608350:intron 45.0%
GCAGTGACACTATTGTGTAG+GGG + chr4_2:55350144-55350163 None:intergenic 45.0%
GAGCAGTGACACTATTGTGT+AGG + chr4_2:55350146-55350165 None:intergenic 45.0%
AGCACTCTATCTTCAGCCTT+TGG + chr4_2:55350528-55350547 None:intergenic 45.0%
AAAGGCTGAAGATAGAGTGC+TGG - chr4_2:55350527-55350546 Msa0608350:intron 45.0%
AAAGGAAGATGATAGAGCCG+AGG - chr4_2:55350587-55350606 Msa0608350:intron 45.0%
GCTTCTCACATGGTAATTGC+TGG - chr4_2:55350627-55350646 Msa0608350:CDS 45.0%
TTCAACAGATGCTCCTCCTA+TGG + chr4_2:55350967-55350986 None:intergenic 45.0%
TGATTCTCTTGGGTGAAGTG+GGG + chr4_2:55351143-55351162 None:intergenic 45.0%
CTTGATTCTCTTGGGTGAAG+TGG + chr4_2:55351145-55351164 None:intergenic 45.0%
AGAAGGAGGGAAAACTAGAC+AGG - chr4_2:55351184-55351203 Msa0608350:intron 45.0%
!!! AATGGTGCTGCTGGTGTTTT+TGG + chr4_2:55351512-55351531 None:intergenic 45.0%
!! AAAAGTACTCGAACACCCCA+AGG + chr4_2:55351652-55351671 None:intergenic 45.0%
! GGCCTGGTCAATGTTAGTTT+CGG + chr4_2:55351717-55351736 None:intergenic 45.0%
AAATTCAGGTGACTTAGGCC+TGG + chr4_2:55351733-55351752 None:intergenic 45.0%
ACCTTAAACTCTGGTGGTTG+GGG + chr4_2:55351994-55352013 None:intergenic 45.0%
AGCTTCAAAAGCCTCATCAG+AGG - chr4_2:55352142-55352161 Msa0608350:CDS 45.0%
CTTATGAGACACCTCTGATG+AGG + chr4_2:55352156-55352175 None:intergenic 45.0%
!! CTCATCAGAGGTGTCTCATA+AGG - chr4_2:55352154-55352173 Msa0608350:intron 45.0%
! GGTTTAGGTTCAGTGAGATG+AGG + chr4_2:55352276-55352295 None:intergenic 45.0%
! GTTTGGAGTAGTGGAGGTTT+AGG + chr4_2:55352291-55352310 None:intergenic 45.0%
! AGTGATGTTTGGAGTAGTGG+AGG + chr4_2:55352297-55352316 None:intergenic 45.0%
AGGGGTCTTGCCTTGAATTT+AGG + chr4_2:55352384-55352403 None:intergenic 45.0%
AATAAATCAGCCACTGCGGT+AGG + chr4_2:55352604-55352623 None:intergenic 45.0%
! GGATTTGGAGTAGTGGTTCT+TGG + chr4_2:55352790-55352809 None:intergenic 45.0%
! GTGTGCAGATGGAATGGATT+TGG + chr4_2:55352805-55352824 None:intergenic 45.0%
TTGATCATGTGGCAGGAAAG+AGG - chr4_2:55352904-55352923 Msa0608350:intron 45.0%
! CTTTTGTACCACGGGATAGT+CGG + chr4_2:55353028-55353047 None:intergenic 45.0%
!! CATTGTTTGGGTTCTGGCTT+TGG + chr4_2:55353126-55353145 None:intergenic 45.0%
!! CTCCGGTTTTGTGCATTGTT+TGG + chr4_2:55353139-55353158 None:intergenic 45.0%
AAAACCGGAGCCCTTTCAAT+TGG - chr4_2:55353149-55353168 Msa0608350:CDS 45.0%
GAACTTGTGTAAGGGGTTTG+CGG + chr4_2:55353456-55353475 None:intergenic 45.0%
ACATTTGAATCATCGAGCCG+TGG - chr4_2:55353489-55353508 Msa0608350:intron 45.0%
GGAAAGTGAAGCAGCAAGAA+TGG - chr4_2:55353681-55353700 Msa0608350:intron 45.0%
!! AGGCACTGAAACAGATGAGA+AGG - chr4_2:55353808-55353827 Msa0608350:intron 45.0%
! TTGGAACTGGTCTAGCATGA+GGG + chr4_2:55353842-55353861 None:intergenic 45.0%
! TTTGGAACTGGTCTAGCATG+AGG + chr4_2:55353843-55353862 None:intergenic 45.0%
CTGCACTCTATTGTTGCATC+AGG - chr4_2:55353961-55353980 Msa0608350:intron 45.0%
CTCCAAAGAAGACGGTTCAA+TGG - chr4_2:55354026-55354045 Msa0608350:intron 45.0%
GTCATCTCATGCTAGTAGCA+GGG + chr4_2:55354067-55354086 None:intergenic 45.0%
AGTCATCTCATGCTAGTAGC+AGG + chr4_2:55354068-55354087 None:intergenic 45.0%
TGCTACTAGCATGAGATGAC+TGG - chr4_2:55354067-55354086 Msa0608350:CDS 45.0%
GCTACTAGCATGAGATGACT+GGG - chr4_2:55354068-55354087 Msa0608350:CDS 45.0%
TATTACAGAGACACCTAGGG+AGG + chr4_2:55354146-55354165 None:intergenic 45.0%
GGAATTGAAAATGGCGGTGG+AGG - chr4_2:55349425-55349444 Msa0608350:three_prime_UTR 50.0%
ATTGAAAATGGCGGTGGAGG+AGG - chr4_2:55349428-55349447 Msa0608350:three_prime_UTR 50.0%
TTGAAAATGGCGGTGGAGGA+GGG - chr4_2:55349429-55349448 Msa0608350:three_prime_UTR 50.0%
TATCAGGATGCGGATGCTGT+TGG - chr4_2:55350894-55350913 Msa0608350:intron 50.0%
AACACAGCGACATCCATAGG+AGG - chr4_2:55350951-55350970 Msa0608350:intron 50.0%
!! GGAGGAGCATCTGTTGAAGT+AGG - chr4_2:55350969-55350988 Msa0608350:intron 50.0%
ATCAGCAGCCACAAAGAGCA+CGG - chr4_2:55351109-55351128 Msa0608350:CDS 50.0%
TGGGGTGTACTTCTTGGCAT+GGG + chr4_2:55351976-55351995 None:intergenic 50.0%
TTGGGGTGTACTTCTTGGCA+TGG + chr4_2:55351977-55351996 None:intergenic 50.0%
ACCCCAACCACCAGAGTTTA+AGG - chr4_2:55351990-55352009 Msa0608350:intron 50.0%
!! AGCTTTTCACTGTTGGTGGG+CGG + chr4_2:55352326-55352345 None:intergenic 50.0%
TCCATTCCATCTGCACACTG+AGG - chr4_2:55352807-55352826 Msa0608350:intron 50.0%
ACCTCAGTGTGCAGATGGAA+TGG + chr4_2:55352811-55352830 None:intergenic 50.0%
AACGAACCTCAGTGTGCAGA+TGG + chr4_2:55352816-55352835 None:intergenic 50.0%
GGAAGCAACAAGGGTTCCAA+AGG - chr4_2:55352981-55353000 Msa0608350:intron 50.0%
!! TAGGGGTATGGGTTAGCCTT+TGG + chr4_2:55353000-55353019 None:intergenic 50.0%
! AGTCGGTGGTATAGGGGTAT+GGG + chr4_2:55353011-55353030 None:intergenic 50.0%
TAGTCGGTGGTATAGGGGTA+TGG + chr4_2:55353012-55353031 None:intergenic 50.0%
ACGGGATAGTCGGTGGTATA+GGG + chr4_2:55353018-55353037 None:intergenic 50.0%
!! GTTTGGGTTCTGGCTTTGGT+GGG + chr4_2:55353122-55353141 None:intergenic 50.0%
!! TGTTTGGGTTCTGGCTTTGG+TGG + chr4_2:55353123-55353142 None:intergenic 50.0%
CTCTCCAATTGAAAGGGCTC+CGG + chr4_2:55353156-55353175 None:intergenic 50.0%
GGAGAGTCTAGTGAGACATG+AGG - chr4_2:55353170-55353189 Msa0608350:CDS 50.0%
!! CCTTCTCTGGAACTGGGATT+GGG + chr4_2:55353432-55353451 None:intergenic 50.0%
!! ACCTTCTCTGGAACTGGGAT+TGG + chr4_2:55353433-55353452 None:intergenic 50.0%
! TTTTCTTCGGCCTCGCAGCA+TGG + chr4_2:55350768-55350787 None:intergenic 55.0%
!! AAAGAGTGTTGGGCAGTGGC+AGG + chr4_2:55351583-55351602 None:intergenic 55.0%
!! TGGGAAAGAGTGTTGGGCAG+TGG + chr4_2:55351587-55351606 None:intergenic 55.0%
CAGCGCTCTTCACTCTAGCA+GGG + chr4_2:55351776-55351795 None:intergenic 55.0%
ACTTCTTGGCATGGGAGGCA+AGG + chr4_2:55351968-55351987 None:intergenic 55.0%
GGTGTACTTCTTGGCATGGG+AGG + chr4_2:55351973-55351992 None:intergenic 55.0%
GGTGGTTGGGGTGTACTTCT+TGG + chr4_2:55351982-55352001 None:intergenic 55.0%
!! GCTTTTCACTGTTGGTGGGC+GGG + chr4_2:55352325-55352344 None:intergenic 55.0%
AAATCAGCCACTGCGGTAGG+AGG + chr4_2:55352601-55352620 None:intergenic 55.0%
CGGGATAGTCGGTGGTATAG+GGG + chr4_2:55353017-55353036 None:intergenic 55.0%
CACGGGATAGTCGGTGGTAT+AGG + chr4_2:55353019-55353038 None:intergenic 55.0%
! CTATACCACCGACTATCCCG+TGG - chr4_2:55353017-55353036 Msa0608350:CDS 55.0%
TTGTACCACGGGATAGTCGG+TGG + chr4_2:55353025-55353044 None:intergenic 55.0%
CCCAATCCCAGTTCCAGAGA+AGG - chr4_2:55353429-55353448 Msa0608350:intron 55.0%
!! TGCGGACCTTCTCTGGAACT+GGG + chr4_2:55353438-55353457 None:intergenic 55.0%
!! TTGCGGACCTTCTCTGGAAC+TGG + chr4_2:55353439-55353458 None:intergenic 55.0%
AGTAGCAGGGCTCGAAGTTG+TGG + chr4_2:55354054-55354073 None:intergenic 55.0%
TGAATCCTTGGCACCTCCCT+AGG - chr4_2:55354130-55354149 Msa0608350:CDS 55.0%
GATCGTTGTGCCACCACTGC+CGG + chr4_2:55349457-55349476 None:intergenic 60.0%
AGAGGATGCACCATGCTGCG+AGG - chr4_2:55350755-55350774 Msa0608350:intron 60.0%
! CAGCCACAAAGAGCACGGCA+GGG - chr4_2:55351114-55351133 Msa0608350:CDS 60.0%
AGTCCCTGCCGTGCTCTTTG+TGG + chr4_2:55351120-55351139 None:intergenic 60.0%
GCAGCGCTCTTCACTCTAGC+AGG + chr4_2:55351777-55351796 None:intergenic 60.0%
!! GAAGAGCGCTGCTGAGCTTG+AGG - chr4_2:55351785-55351804 Msa0608350:intron 60.0%
GGCGGGCCCTTAGTGATGTT+TGG + chr4_2:55352308-55352327 None:intergenic 60.0%
GTTTCCACCTCCTACCGCAG+TGG - chr4_2:55352591-55352610 Msa0608350:CDS 60.0%
ACTGGGATTGGGTCCCTGCA+AGG + chr4_2:55353421-55353440 None:intergenic 60.0%
AGGGGTTTGCGGACCTTCTC+TGG + chr4_2:55353445-55353464 None:intergenic 60.0%
!! AGACACCTAGGGAGGTGCCA+AGG + chr4_2:55354138-55354157 None:intergenic 60.0%
ATGGCGGTGGAGGAGGGAAC+CGG - chr4_2:55349435-55349454 Msa0608350:three_prime_UTR 65.0%
! GCAGCCACAAAGAGCACGGC+AGG - chr4_2:55351113-55351132 Msa0608350:CDS 65.0%
TCAGCCACTGCGGTAGGAGG+TGG + chr4_2:55352598-55352617 None:intergenic 65.0%
GTGGAGGAGGGAACCGGCAG+TGG - chr4_2:55349441-55349460 Msa0608350:three_prime_UTR 70.0%
GAGGAGGGAACCGGCAGTGG+TGG - chr4_2:55349444-55349463 Msa0608350:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55349277 55354378 55349277 ID=Msa0608350;Name=Msa0608350
chr4_2 mRNA 55349277 55354378 55349277 ID=Msa0608350-mRNA-1;Parent=Msa0608350;Name=Msa0608350-mRNA-1;_AED=0.13;_eAED=0.13;_QI=158|1|1|1|1|1|18|293|755
chr4_2 exon 55349277 55349672 55349277 ID=Msa0608350-mRNA-1:exon:14129;Parent=Msa0608350-mRNA-1
chr4_2 exon 55349766 55349860 55349766 ID=Msa0608350-mRNA-1:exon:14128;Parent=Msa0608350-mRNA-1
chr4_2 exon 55349953 55350012 55349953 ID=Msa0608350-mRNA-1:exon:14127;Parent=Msa0608350-mRNA-1
chr4_2 exon 55350121 55350229 55350121 ID=Msa0608350-mRNA-1:exon:14126;Parent=Msa0608350-mRNA-1
chr4_2 exon 55350372 55350538 55350372 ID=Msa0608350-mRNA-1:exon:14125;Parent=Msa0608350-mRNA-1
chr4_2 exon 55350617 55350736 55350617 ID=Msa0608350-mRNA-1:exon:14124;Parent=Msa0608350-mRNA-1
chr4_2 exon 55350827 55350904 55350827 ID=Msa0608350-mRNA-1:exon:14123;Parent=Msa0608350-mRNA-1
chr4_2 exon 55351025 55351156 55351025 ID=Msa0608350-mRNA-1:exon:14122;Parent=Msa0608350-mRNA-1
chr4_2 exon 55351242 55351397 55351242 ID=Msa0608350-mRNA-1:exon:14121;Parent=Msa0608350-mRNA-1
chr4_2 exon 55351480 55351560 55351480 ID=Msa0608350-mRNA-1:exon:14120;Parent=Msa0608350-mRNA-1
chr4_2 exon 55351644 55351706 55351644 ID=Msa0608350-mRNA-1:exon:14119;Parent=Msa0608350-mRNA-1
chr4_2 exon 55351795 55351947 55351795 ID=Msa0608350-mRNA-1:exon:14118;Parent=Msa0608350-mRNA-1
chr4_2 exon 55352048 55352164 55352048 ID=Msa0608350-mRNA-1:exon:14117;Parent=Msa0608350-mRNA-1
chr4_2 exon 55352265 55352357 55352265 ID=Msa0608350-mRNA-1:exon:14116;Parent=Msa0608350-mRNA-1
chr4_2 exon 55352450 55352755 55352450 ID=Msa0608350-mRNA-1:exon:14115;Parent=Msa0608350-mRNA-1
chr4_2 exon 55352837 55352917 55352837 ID=Msa0608350-mRNA-1:exon:14114;Parent=Msa0608350-mRNA-1
chr4_2 exon 55353017 55353207 55353017 ID=Msa0608350-mRNA-1:exon:14113;Parent=Msa0608350-mRNA-1
chr4_2 exon 55354058 55354378 55354058 ID=Msa0608350-mRNA-1:exon:14112;Parent=Msa0608350-mRNA-1
chr4_2 five_prime_UTR 55354221 55354378 55354221 ID=Msa0608350-mRNA-1:five_prime_utr;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55354058 55354220 55354058 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55353017 55353207 55353017 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55352837 55352917 55352837 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55352450 55352755 55352450 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55352265 55352357 55352265 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55352048 55352164 55352048 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55351795 55351947 55351795 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55351644 55351706 55351644 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55351480 55351560 55351480 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55351242 55351397 55351242 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55351025 55351156 55351025 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55350827 55350904 55350827 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55350617 55350736 55350617 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55350372 55350538 55350372 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55350121 55350229 55350121 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55349953 55350012 55349953 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55349766 55349860 55349766 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 CDS 55349570 55349672 55349570 ID=Msa0608350-mRNA-1:cds;Parent=Msa0608350-mRNA-1
chr4_2 three_prime_UTR 55349277 55349569 55349277 ID=Msa0608350-mRNA-1:three_prime_utr;Parent=Msa0608350-mRNA-1
Gene Sequence

>Msa0608350

ATGGCGGTGGAGGAGGGAACCGGCAGTGGTGGCACAACGATCATCGACGAGATTTACGAATTCTGTGCACCTAGATTCTTCGATTTCTTGAAAGGGGAATCTGATGACGATGTTCGTAGGGCTGAACTTTGGTTTCACACCGCTTTATCCTATGCTCCTTCTCCATTCATGCCTAAAATCAAGGCTGGTAGATCCATTACTGTAGACACATTATGTGATTTTAGTGAAGCTGACAATATGCCAAAGGCTGAAGATAGAGTGCTGGAATCAAATACTCAACCACAGAGCATTATTAGCAACGTAAAGGAAGATGATAGAGCCGAGGAAGAAAAGCTTACAATTGCTTCTCACATGAATTCTACCATTAAGAAAGAGGATGCACCATGCTGCGAGGCCGAAGAAAATAATTCAACTTCTCTTGAGGTATTAAGCGTGGATGCGGATGCTGTTGGTAAGAAAATGAGTACTCATAAAGCGGAGATCATAAACACAGCGACATCCATAGGAGGAGCATCTGTTGAAGTAGGAAAAGATGCTTGCACACCAAAACCAGCATTGCGAAAAAATGTCAATGCAGCTTTCACTAATTCTAAGAAGCAACAGAACTCTAAGAAGGTATCCACAAATACCAAAACTCGATTACAATCAGCAGCCACAAAGAGCACGGCAGGGACTCCCCACTTCACCCAAGAGAATCAAGCCATTAAAAGGCAAAAATTAGAAGGAGGGAAAACTAGACAGATTCTGAATCTCAAACCTCAAACTTTGCCTCATGATAAGTCAAAACTGGGTTACTCTTCAAGTACTAGCAAAACTCAGAATGAGGACAGAAAGGTTTATGTTCGTGACACACCAAAAACACCAGCAGCACCATTTAAATCAATGGCAGAAATGATGAAGAAATTTGAGTCTAGTACGAGAGACCTGCCACTGCCCAACACTCTTTCCCATACAAAACCGAAACTAACATTGACCAGGCCTAAGTCACCTGAATTTGAGACAAATCAGCGGGTTCGCCCTGCTAGAGTGAAGAGCGCTGCTGAGCTTGAGGAAGAAATGATGGCTAAAATGCCAAAATTCAAGGCTCGAACACTAAATAAGAAGATTTTGCAAACTTCAACCTTGCCTCCCATGCCAAGAAGTACACCCCAACCACCAGAGTTTAAGGAATTTCATCTAGAAACATTGGCTAGGGCTCATCAAAATACAGATTCAGCTTCAAAAGCCTCATCAGAGGTGTCTCATAAGGAGAACTCATCGAAACCTCATCTCACTGAACCTAAACCTCCACTACTCCAAACATCACTAAGGGCCCGCCCACCAACAGTGAAAAGCTCATTAGAAATTGAGCAAGAGGAACTTGAAAAGATTCCTAAATTCAAGGCAAGACCCCTAAATAAAAAGATCTTTGAAAGTAAAGGGGATATTGGAATATTCTGCCATATGAAGAAACATGTTACCGAACCTCAAGAATTTCACTTTGCAACAAGTGAGAGGTTTCCACCTCCTACCGCAGTGGCTGATTTATTTGACAAGCTTTCTTTGAAGTCTGAACCTGCACGTAATACAATTCCAAGAACCACTACTCCAAATCCATTCCATCTGCACACTGAGGAAAGAGGAGCTGAGAAAGAGAAGAAACTGTACATGGAACTTTTGCAGAAAGAATTGGAAGAGGAAGCAACAAGGGTTCCAAAGGCTAACCCATACCCCTATACCACCGACTATCCCGTGATCCCACCAAAGCCAGAACCCAAACAATGCACAAAACCGGAGCCCTTTCAATTGGAGAGTCTAGTGAGACATGAGGAAGAAATGCAAAGGGAACAAGAAGAAAGACTTAGAATGGAAAGAGAAGAAGCACAGATGAGAAAATTTAAGGCGCAACCAGTATTAAAAGAGGACCCAATCCCAGTTCCAGAGAAGGTCCGCAAACCCCTTACACAAGTTCAAGAGTTTGATTTACATTTGAATCATCGAGCCGTGGATAGAGCACAATTTGATCAGAAGATTAAGGAGAAAGAAATGGTATACAAACGATACAGAGAGGAAAGTGAAGCAGCAAGAATGATAGAGGAAGAGAAGGCACTGAAACAGATGAGAAGGACAATGGTCCCTCATGCTAGACCAGTTCCAAACTTTAATAATCCTTTTTGCCCACAAAAGACTTCTAAAACAACAAAACCCAAGTCACCAAACTTGCGTTTACTCCAAAGAAGACGGTTCAATGGTTCCACAACTTCGAGCCCTGCTACTAGCATGAGATGA
Protein sequence

>Msa0608350

MAVEEGTGSGGTTIIDEIYEFCAPRFFDFLKGESDDDVRRAELWFHTALSYAPSPFMPKIKAGRSITVDTLCDFSEADNMPKAEDRVLESNTQPQSIISNVKEDDRAEEEKLTIASHMNSTIKKEDAPCCEAEENNSTSLEVLSVDADAVGKKMSTHKAEIINTATSIGGASVEVGKDACTPKPALRKNVNAAFTNSKKQQNSKKVSTNTKTRLQSAATKSTAGTPHFTQENQAIKRQKLEGGKTRQILNLKPQTLPHDKSKLGYSSSTSKTQNEDRKVYVRDTPKTPAAPFKSMAEMMKKFESSTRDLPLPNTLSHTKPKLTLTRPKSPEFETNQRVRPARVKSAAELEEEMMAKMPKFKARTLNKKILQTSTLPPMPRSTPQPPEFKEFHLETLARAHQNTDSASKASSEVSHKENSSKPHLTEPKPPLLQTSLRARPPTVKSSLEIEQEELEKIPKFKARPLNKKIFESKGDIGIFCHMKKHVTEPQEFHFATSERFPPPTAVADLFDKLSLKSEPARNTIPRTTTPNPFHLHTEERGAEKEKKLYMELLQKELEEEATRVPKANPYPYTTDYPVIPPKPEPKQCTKPEPFQLESLVRHEEEMQREQEERLRMEREEAQMRKFKAQPVLKEDPIPVPEKVRKPLTQVQEFDLHLNHRAVDRAQFDQKIKEKEMVYKRYREESEAARMIEEEKALKQMRRTMVPHARPVPNFNNPFCPQKTSKTTKPKSPNLRLLQRRRFNGSTTSSPATSMR*