Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945100 | sp|O04376|2A5B_ARATH | 66.872 | 486 | 151 | 3 | 1 | 477 | 1 | 485 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945100 | A0A072VQI0 | 99.180 | 488 | 4 | 0 | 1 | 488 | 1 | 488 | 0.0 | 996 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0945100 | -0.819566 | 1.085858e-52 | -8.615850e-47 |
| Msa0005270 | Msa0945100 | 0.800536 | 1.376742e-48 | -8.615850e-47 |
| Msa0008840 | Msa0945100 | 0.804770 | 1.841522e-49 | -8.615850e-47 |
| Msa0015460 | Msa0945100 | 0.807517 | 4.862280e-50 | -8.615850e-47 |
| Msa0036370 | Msa0945100 | 0.807886 | 4.059157e-50 | -8.615850e-47 |
| Msa0043730 | Msa0945100 | 0.833195 | 6.132269e-56 | -8.615850e-47 |
| Msa0052860 | Msa0945100 | 0.801016 | 1.098362e-48 | -8.615850e-47 |
| Msa0059890 | Msa0945100 | 0.822857 | 1.892486e-53 | -8.615850e-47 |
| Msa0072170 | Msa0945100 | 0.827548 | 1.471815e-54 | -8.615850e-47 |
| Msa0085720 | Msa0945100 | 0.819014 | 1.450276e-52 | -8.615850e-47 |
| Msa0090030 | Msa0945100 | 0.851705 | 7.457760e-61 | -8.615850e-47 |
| Msa0090390 | Msa0945100 | 0.827186 | 1.797621e-54 | -8.615850e-47 |
| Msa0090410 | Msa0945100 | 0.867219 | 1.607604e-65 | -8.615850e-47 |
| Msa0092170 | Msa0945100 | 0.815682 | 8.156124e-52 | -8.615850e-47 |
| Msa0099510 | Msa0945100 | 0.814651 | 1.382066e-51 | -8.615850e-47 |
| Msa0120340 | Msa0945100 | 0.810465 | 1.137300e-50 | -8.615850e-47 |
| Msa0120540 | Msa0945100 | 0.826484 | 2.645707e-54 | -8.615850e-47 |
| Msa0613460 | Msa0945100 | 0.803966 | 2.709034e-49 | -8.615850e-47 |
| Msa0614990 | Msa0945100 | 0.812153 | 4.892193e-51 | -8.615850e-47 |
| Msa0620330 | Msa0945100 | 0.808149 | 3.568995e-50 | -8.615850e-47 |
| Msa0621650 | Msa0945100 | 0.802602 | 5.190454e-49 | -8.615850e-47 |
| Msa0643320 | Msa0945100 | 0.811722 | 6.074715e-51 | -8.615850e-47 |
| Msa0653320 | Msa0945100 | -0.816689 | 4.857316e-52 | -8.615850e-47 |
| Msa0679550 | Msa0945100 | 0.820006 | 8.616469e-53 | -8.615850e-47 |
| Msa0679810 | Msa0945100 | 0.803218 | 3.871332e-49 | -8.615850e-47 |
| Msa0682090 | Msa0945100 | 0.804205 | 2.415484e-49 | -8.615850e-47 |
| Msa0682140 | Msa0945100 | 0.807398 | 5.154811e-50 | -8.615850e-47 |
| Msa0683140 | Msa0945100 | 0.813623 | 2.331058e-51 | -8.615850e-47 |
| Msa0683600 | Msa0945100 | 0.802701 | 4.950837e-49 | -8.615850e-47 |
| Msa0698440 | Msa0945100 | 0.832762 | 7.855930e-56 | -8.615850e-47 |
| Msa0711490 | Msa0945100 | 0.811585 | 6.502888e-51 | -8.615850e-47 |
| Msa0713350 | Msa0945100 | 0.820086 | 8.260967e-53 | -8.615850e-47 |
| Msa0720370 | Msa0945100 | 0.805687 | 1.183472e-49 | -8.615850e-47 |
| Msa0721340 | Msa0945100 | 0.806126 | 9.571191e-50 | -8.615850e-47 |
| Msa0748070 | Msa0945100 | 0.813483 | 2.501295e-51 | -8.615850e-47 |
| Msa0758230 | Msa0945100 | 0.808906 | 2.459832e-50 | -8.615850e-47 |
| Msa0791820 | Msa0945100 | 0.809335 | 1.991065e-50 | -8.615850e-47 |
| Msa0792090 | Msa0945100 | 0.835622 | 1.507824e-56 | -8.615850e-47 |
| Msa0798290 | Msa0945100 | 0.801665 | 8.089974e-49 | -8.615850e-47 |
| Msa0805920 | Msa0945100 | 0.801931 | 7.132812e-49 | -8.615850e-47 |
| Msa0809140 | Msa0945100 | 0.810257 | 1.261101e-50 | -8.615850e-47 |
| Msa0820530 | Msa0945100 | -0.802544 | 5.333624e-49 | -8.615850e-47 |
| Msa0821800 | Msa0945100 | 0.808023 | 3.796317e-50 | -8.615850e-47 |
| Msa0130520 | Msa0945100 | 0.821932 | 3.103903e-53 | -8.615850e-47 |
| Msa0131450 | Msa0945100 | 0.805334 | 1.403891e-49 | -8.615850e-47 |
| Msa0137040 | Msa0945100 | 0.802246 | 6.145758e-49 | -8.615850e-47 |
| Msa0137870 | Msa0945100 | 0.808690 | 2.735839e-50 | -8.615850e-47 |
| Msa0137890 | Msa0945100 | 0.867864 | 9.990968e-66 | -8.615850e-47 |
| Msa0138160 | Msa0945100 | 0.803718 | 3.049226e-49 | -8.615850e-47 |
| Msa0140400 | Msa0945100 | 0.834433 | 3.006075e-56 | -8.615850e-47 |
| Msa0140510 | Msa0945100 | -0.815070 | 1.115773e-51 | -8.615850e-47 |
| Msa0140520 | Msa0945100 | -0.833179 | 6.187873e-56 | -8.615850e-47 |
| Msa0145110 | Msa0945100 | 0.800532 | 1.379110e-48 | -8.615850e-47 |
| Msa0155880 | Msa0945100 | 0.814801 | 1.280109e-51 | -8.615850e-47 |
| Msa0175050 | Msa0945100 | 0.817624 | 2.994352e-52 | -8.615850e-47 |
| Msa0176330 | Msa0945100 | 0.810257 | 1.260867e-50 | -8.615850e-47 |
| Msa0193540 | Msa0945100 | 0.839351 | 1.668645e-57 | -8.615850e-47 |
| Msa0202930 | Msa0945100 | 0.806983 | 6.311170e-50 | -8.615850e-47 |
| Msa0208810 | Msa0945100 | 0.802407 | 5.692664e-49 | -8.615850e-47 |
| Msa0211650 | Msa0945100 | 0.814982 | 1.167057e-51 | -8.615850e-47 |
| Msa0212750 | Msa0945100 | -0.810365 | 1.195192e-50 | -8.615850e-47 |
| Msa0229940 | Msa0945100 | 0.819256 | 1.277628e-52 | -8.615850e-47 |
| Msa0235470 | Msa0945100 | 0.813969 | 1.955734e-51 | -8.615850e-47 |
| Msa0377530 | Msa0945100 | 0.802864 | 4.582844e-49 | -8.615850e-47 |
| Msa0381000 | Msa0945100 | 0.804679 | 1.924395e-49 | -8.615850e-47 |
| Msa0389810 | Msa0945100 | 0.800026 | 1.747889e-48 | -8.615850e-47 |
| Msa0430870 | Msa0945100 | 0.812077 | 5.083641e-51 | -8.615850e-47 |
| Msa0433530 | Msa0945100 | 0.809300 | 2.025443e-50 | -8.615850e-47 |
| Msa0436190 | Msa0945100 | 0.841663 | 4.146318e-58 | -8.615850e-47 |
| Msa0436200 | Msa0945100 | 0.812162 | 4.871196e-51 | -8.615850e-47 |
| Msa0439890 | Msa0945100 | 0.821305 | 4.332383e-53 | -8.615850e-47 |
| Msa0442270 | Msa0945100 | 0.802257 | 6.113763e-49 | -8.615850e-47 |
| Msa0468130 | Msa0945100 | 0.812876 | 3.399666e-51 | -8.615850e-47 |
| Msa0252240 | Msa0945100 | 0.811362 | 7.270902e-51 | -8.615850e-47 |
| Msa0265160 | Msa0945100 | 0.817181 | 3.766790e-52 | -8.615850e-47 |
| Msa0266210 | Msa0945100 | 0.828558 | 8.408572e-55 | -8.615850e-47 |
| Msa0266240 | Msa0945100 | 0.809407 | 1.921778e-50 | -8.615850e-47 |
| Msa0267100 | Msa0945100 | 0.875241 | 3.598836e-68 | -8.615850e-47 |
| Msa0274630 | Msa0945100 | 0.834977 | 2.193003e-56 | -8.615850e-47 |
| Msa0279210 | Msa0945100 | -0.830579 | 2.712873e-55 | -8.615850e-47 |
| Msa0281480 | Msa0945100 | 0.805281 | 1.439998e-49 | -8.615850e-47 |
| Msa0287670 | Msa0945100 | 0.834277 | 3.289634e-56 | -8.615850e-47 |
| Msa0296980 | Msa0945100 | -0.801920 | 7.169026e-49 | -8.615850e-47 |
| Msa0304840 | Msa0945100 | 0.801767 | 7.709270e-49 | -8.615850e-47 |
| Msa0305890 | Msa0945100 | 0.808034 | 3.775285e-50 | -8.615850e-47 |
| Msa0307560 | Msa0945100 | 0.816560 | 5.192281e-52 | -8.615850e-47 |
| Msa0308200 | Msa0945100 | 0.815711 | 8.035090e-52 | -8.615850e-47 |
| Msa0314060 | Msa0945100 | 0.830949 | 2.201349e-55 | -8.615850e-47 |
| Msa0318970 | Msa0945100 | -0.821439 | 4.034347e-53 | -8.615850e-47 |
| Msa0320610 | Msa0945100 | 0.801872 | 7.335344e-49 | -8.615850e-47 |
| Msa0340810 | Msa0945100 | 0.808473 | 3.044644e-50 | -8.615850e-47 |
| Msa0349700 | Msa0945100 | 0.815569 | 8.643689e-52 | -8.615850e-47 |
| Msa0491520 | Msa0945100 | 0.805664 | 1.196799e-49 | -8.615850e-47 |
| Msa0517490 | Msa0945100 | 0.802174 | 6.356720e-49 | -8.615850e-47 |
| Msa0524590 | Msa0945100 | 0.818271 | 2.138844e-52 | -8.615850e-47 |
| Msa0524600 | Msa0945100 | 0.828174 | 1.040700e-54 | -8.615850e-47 |
| Msa0527910 | Msa0945100 | 0.800818 | 1.205456e-48 | -8.615850e-47 |
| Msa0534410 | Msa0945100 | 0.816872 | 4.419169e-52 | -8.615850e-47 |
| Msa0545290 | Msa0945100 | 0.806723 | 7.162462e-50 | -8.615850e-47 |
| Msa0557950 | Msa0945100 | -0.803769 | 2.976671e-49 | -8.615850e-47 |
| Msa0578090 | Msa0945100 | 0.800668 | 1.293904e-48 | -8.615850e-47 |
| Msa0579370 | Msa0945100 | 0.827738 | 1.325064e-54 | -8.615850e-47 |
| Msa0600890 | Msa0945100 | 0.807767 | 4.304520e-50 | -8.615850e-47 |
| Msa0602370 | Msa0945100 | 0.830127 | 3.498921e-55 | -8.615850e-47 |
| Msa0861830 | Msa0945100 | 0.813885 | 2.041085e-51 | -8.615850e-47 |
| Msa0879850 | Msa0945100 | 0.804798 | 1.816818e-49 | -8.615850e-47 |
| Msa0879860 | Msa0945100 | 0.818239 | 2.174232e-52 | -8.615850e-47 |
| Msa0930820 | Msa0945100 | 0.810828 | 9.493234e-51 | -8.615850e-47 |
| Msa0937330 | Msa0945100 | 0.816855 | 4.459968e-52 | -8.615850e-47 |
| Msa0945100 | Msa0945120 | 0.832643 | 8.410256e-56 | -8.615850e-47 |
| Msa0945100 | Msa0982270 | 0.803851 | 2.861236e-49 | -8.615850e-47 |
| Msa0945100 | Msa0993240 | 0.828397 | 9.197980e-55 | -8.615850e-47 |
| Msa0945100 | Msa1021510 | 0.818370 | 2.030714e-52 | -8.615850e-47 |
| Msa0945100 | Msa1029080 | -0.801326 | 9.492503e-49 | -8.615850e-47 |
| Msa0945100 | Msa1036910 | 0.857371 | 1.708200e-62 | -8.615850e-47 |
| Msa0945100 | Msa1038210 | -0.820346 | 7.199454e-53 | -8.615850e-47 |
| Msa0945100 | Msa1047720 | 0.816010 | 6.891624e-52 | -8.615850e-47 |
| Msa0945100 | Msa1048700 | 0.805047 | 1.611653e-49 | -8.615850e-47 |
| Msa0945100 | Msa1094430 | 0.814727 | 1.329738e-51 | -8.615850e-47 |
| Msa0945100 | Msa1105500 | 0.801264 | 9.775589e-49 | -8.615850e-47 |
| Msa0945100 | Msa1115280 | 0.807209 | 5.653699e-50 | -8.615850e-47 |
| Msa0945100 | Msa1135880 | 0.811091 | 8.325714e-51 | -8.615850e-47 |
| Msa0945100 | Msa1164020 | 0.846399 | 2.226113e-59 | -8.615850e-47 |
| Msa0945100 | Msa1172130 | -0.836952 | 6.922119e-57 | -8.615850e-47 |
| Msa0945100 | Msa1174310 | 0.814353 | 1.608619e-51 | -8.615850e-47 |
| Msa0945100 | Msa1178370 | 0.823403 | 1.411450e-53 | -8.615850e-47 |
| Msa0945100 | Msa1229850 | 0.812824 | 3.491247e-51 | -8.615850e-47 |
| Msa0945100 | Msa1236070 | -0.851278 | 9.849372e-61 | -8.615850e-47 |
| Msa0945100 | Msa1263290 | -0.803019 | 4.255909e-49 | -8.615850e-47 |
| Msa0945100 | Msa1267260 | 0.811842 | 5.719383e-51 | -8.615850e-47 |
| Msa0945100 | Msa1270660 | 0.809428 | 1.901621e-50 | -8.615850e-47 |
| Msa0945100 | Msa1280620 | 0.821966 | 3.047463e-53 | -8.615850e-47 |
| Msa0945100 | Msa1294960 | 0.815124 | 1.085687e-51 | -8.615850e-47 |
| Msa0945100 | Msa1298550 | -0.800097 | 1.691143e-48 | -8.615850e-47 |
| Msa0945100 | Msa1307740 | 0.810949 | 8.938251e-51 | -8.615850e-47 |
| Msa0945100 | Msa1314770 | 0.814033 | 1.893347e-51 | -8.615850e-47 |
| Msa0945100 | Msa1330890 | -0.824208 | 9.142830e-54 | -8.615850e-47 |
| Msa0945100 | Msa1332050 | 0.823451 | 1.375129e-53 | -8.615850e-47 |
| Msa0945100 | Msa1338610 | 0.806095 | 9.715396e-50 | -8.615850e-47 |
| Msa0945100 | Msa1341490 | 0.805955 | 1.039609e-49 | -8.615850e-47 |
| Msa0945100 | Msa1350690 | 0.833432 | 5.352457e-56 | -8.615850e-47 |
| Msa0945100 | Msa1352540 | -0.804010 | 2.652267e-49 | -8.615850e-47 |
| Msa0945100 | Msa1360280 | 0.800237 | 1.583863e-48 | -8.615850e-47 |
| Msa0945100 | Msa1363700 | 0.857775 | 1.297201e-62 | -8.615850e-47 |
| Msa0945100 | Msa1371090 | 0.852336 | 4.936097e-61 | -8.615850e-47 |
| Msa0945100 | Msa1393800 | 0.804220 | 2.398773e-49 | -8.615850e-47 |
| Msa0945100 | Msa1407970 | 0.816865 | 4.435953e-52 | -8.615850e-47 |
| Msa0945100 | Msa1417810 | -0.821450 | 4.011452e-53 | -8.615850e-47 |
| Msa0945100 | Msa1422840 | 0.821123 | 4.773980e-53 | -8.615850e-47 |
| Msa0945100 | Msa1433220 | 0.817860 | 2.648538e-52 | -8.615850e-47 |
| Msa0945100 | Msa1435400 | 0.803768 | 2.977567e-49 | -8.615850e-47 |
| Msa0945100 | Msa1443610 | 0.828853 | 7.137235e-55 | -8.615850e-47 |
| Msa0945100 | Msa1445400 | -0.822398 | 2.420107e-53 | -8.615850e-47 |
| Msa0945100 | Msa1447110 | 0.817555 | 3.103303e-52 | -8.615850e-47 |
| Msa0945100 | Msa1449350 | -0.819864 | 9.284125e-53 | -8.615850e-47 |
| Msa0945100 | Msa1449910 | 0.801451 | 8.948176e-49 | -8.615850e-47 |
| Msa0945100 | Msa1459760 | -0.813499 | 2.482229e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945100 | MtrunA17_Chr1g0210311 | 99.180 | 488 | 4 | 0 | 1 | 488 | 1 | 488 | 0.0 | 996 |
| Msa0945100 | MtrunA17_Chr7g0264871 | 66.527 | 478 | 141 | 4 | 1 | 477 | 1 | 460 | 0.0 | 646 |
| Msa0945100 | MtrunA17_Chr1g0180401 | 66.102 | 472 | 155 | 3 | 12 | 482 | 15 | 482 | 0.0 | 620 |
| Msa0945100 | MtrunA17_Chr3g0123051 | 52.930 | 512 | 217 | 3 | 1 | 488 | 1 | 512 | 0.0 | 562 |
| Msa0945100 | MtrunA17_Chr6g0458891 | 60.422 | 427 | 168 | 1 | 63 | 488 | 80 | 506 | 0.0 | 557 |
| Msa0945100 | MtrunA17_Chr3g0119261 | 63.084 | 428 | 156 | 2 | 63 | 488 | 96 | 523 | 0.0 | 556 |
| Msa0945100 | MtrunA17_Chr1g0148671 | 51.111 | 495 | 230 | 6 | 1 | 488 | 1 | 490 | 2.26e-172 | 494 |
| Msa0945100 | MtrunA17_Chr4g0062821 | 52.778 | 432 | 195 | 4 | 62 | 487 | 69 | 497 | 4.20e-169 | 486 |
| Msa0945100 | MtrunA17_Chr3g0138441 | 50.515 | 485 | 219 | 5 | 9 | 488 | 29 | 497 | 2.09e-167 | 481 |
| Msa0945100 | MtrunA17_Chr1g0211361 | 39.599 | 399 | 238 | 2 | 80 | 477 | 39 | 435 | 1.36e-111 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945100 | AT3G09880.1 | 66.872 | 486 | 151 | 3 | 1 | 477 | 1 | 485 | 0.0 | 634 |
| Msa0945100 | AT5G03470.1 | 62.677 | 493 | 176 | 2 | 1 | 485 | 1 | 493 | 0.0 | 629 |
| Msa0945100 | AT4G15415.1 | 62.443 | 442 | 162 | 3 | 50 | 487 | 64 | 505 | 0.0 | 574 |
| Msa0945100 | AT4G15415.4 | 62.443 | 442 | 162 | 3 | 50 | 487 | 64 | 505 | 0.0 | 574 |
| Msa0945100 | AT4G15415.2 | 62.443 | 442 | 162 | 3 | 50 | 487 | 64 | 505 | 0.0 | 574 |
| Msa0945100 | AT4G15415.5 | 62.443 | 442 | 162 | 3 | 50 | 487 | 64 | 505 | 0.0 | 574 |
| Msa0945100 | AT1G13460.2 | 60.265 | 453 | 166 | 3 | 39 | 477 | 34 | 486 | 0.0 | 568 |
| Msa0945100 | AT1G13460.1 | 60.265 | 453 | 166 | 3 | 39 | 477 | 34 | 486 | 0.0 | 568 |
| Msa0945100 | AT3G21650.1 | 61.982 | 434 | 163 | 2 | 56 | 487 | 94 | 527 | 0.0 | 566 |
| Msa0945100 | AT3G21650.2 | 61.982 | 434 | 163 | 2 | 56 | 487 | 94 | 527 | 0.0 | 566 |
| Msa0945100 | AT3G26020.2 | 64.251 | 414 | 147 | 1 | 63 | 475 | 92 | 505 | 0.0 | 565 |
| Msa0945100 | AT3G26020.5 | 64.251 | 414 | 147 | 1 | 63 | 475 | 92 | 505 | 0.0 | 565 |
| Msa0945100 | AT3G26020.1 | 64.251 | 414 | 147 | 1 | 63 | 475 | 92 | 505 | 0.0 | 565 |
| Msa0945100 | AT3G26020.6 | 64.251 | 414 | 147 | 1 | 63 | 475 | 92 | 505 | 0.0 | 565 |
| Msa0945100 | AT3G54930.2 | 56.914 | 499 | 192 | 5 | 1 | 479 | 1 | 496 | 0.0 | 558 |
| Msa0945100 | AT3G54930.1 | 56.914 | 499 | 192 | 5 | 1 | 479 | 1 | 496 | 0.0 | 558 |
| Msa0945100 | AT3G26030.1 | 57.831 | 415 | 171 | 4 | 65 | 476 | 60 | 473 | 2.84e-174 | 499 |
| Msa0945100 | AT5G25510.1 | 52.064 | 436 | 203 | 4 | 56 | 488 | 60 | 492 | 2.51e-167 | 482 |
| Msa0945100 | AT3G26020.4 | 53.247 | 462 | 138 | 3 | 63 | 475 | 92 | 524 | 4.46e-166 | 480 |
| Msa0945100 | AT4G15415.3 | 64.776 | 335 | 114 | 3 | 50 | 380 | 64 | 398 | 4.58e-158 | 456 |
| Msa0945100 | AT3G26020.7 | 53.034 | 445 | 148 | 5 | 63 | 475 | 92 | 507 | 4.19e-157 | 456 |
| Msa0945100 | AT3G26020.8 | 53.034 | 445 | 148 | 5 | 63 | 475 | 92 | 507 | 4.19e-157 | 456 |
| Msa0945100 | AT3G26020.3 | 53.034 | 445 | 148 | 5 | 63 | 475 | 92 | 507 | 4.19e-157 | 456 |
| Msa0945100 | AT3G54930.3 | 53.750 | 400 | 162 | 5 | 1 | 380 | 1 | 397 | 3.27e-141 | 412 |
Find 109 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGTTCATAGGATTTA+TGG | 0.120531 | 6_3:-23723617 | Msa0945100:CDS |
| CCTTAACAGCCCTCACTTTC+AGG | 0.127143 | 6_3:-23723165 | Msa0945100:intron |
| GAAACCCTAGAAATTGAATT+TGG | 0.146008 | 6_3:+23724328 | None:intergenic |
| TAACAACTACTTCGTAAAAT+TGG | 0.184498 | 6_3:+23724203 | None:intergenic |
| TTATTAAATTAAAATAAAAT+TGG | 0.203905 | 6_3:+23724473 | None:intergenic |
| TAGGATTTATGGGAAGTTTA+TGG | 0.204803 | 6_3:-23723606 | Msa0945100:CDS |
| TAAAGTAAAGTAGTAAATTT+TGG | 0.210075 | 6_3:+23721304 | None:intergenic |
| TTAATAGCCTTTCTTATAAA+TGG | 0.219179 | 6_3:+23723575 | None:intergenic |
| CAATTTGAGGAAGATGTTTC+AGG | 0.233986 | 6_3:-23721754 | Msa0945100:CDS |
| TTGTGAATTGCTTGAGATTA+TGG | 0.239821 | 6_3:-23723504 | Msa0945100:CDS |
| TGATACGACGAAATACATTT+TGG | 0.248353 | 6_3:+23723398 | None:intergenic |
| TTGGCTGATCCTGTGATAAA+AGG | 0.260952 | 6_3:-23723326 | Msa0945100:CDS |
| TCCAAAGCATCGAAGATTAT+TGG | 0.262334 | 6_3:+23721825 | None:intergenic |
| GCCAATAATCTTCGATGCTT+TGG | 0.278269 | 6_3:-23721826 | Msa0945100:CDS |
| ATTATGGCTAGTATTATAAA+TGG | 0.283991 | 6_3:-23723488 | Msa0945100:CDS |
| CTGAAACATCTTCCTCAAAT+TGG | 0.288629 | 6_3:+23721755 | None:intergenic |
| ACAAGATACTGGAGGATATA+AGG | 0.320389 | 6_3:+23721146 | None:intergenic |
| AATGCTTCGCGTTCTGGAAC+GGG | 0.322734 | 6_3:+23724067 | None:intergenic |
| AAACCCTAGAAATTGAATTT+GGG | 0.327636 | 6_3:+23724329 | None:intergenic |
| ACACTGTTTGTTGAATCTTC+AGG | 0.345971 | 6_3:+23724226 | None:intergenic |
| TCCTTATGACAATTCGTAAC+AGG | 0.354339 | 6_3:+23723287 | None:intergenic |
| CCATTGTTCATAGGATTTAT+GGG | 0.357973 | 6_3:-23723616 | Msa0945100:CDS |
| CGGTGGTAGGTTTGGTGGCT+CGG | 0.363116 | 6_3:+23724150 | None:intergenic |
| AAACGTGCACACAGGAAATC+AGG | 0.370702 | 6_3:-23724262 | Msa0945100:CDS |
| CACTGTTTGTTGAATCTTCA+GGG | 0.379250 | 6_3:+23724227 | None:intergenic |
| ATTTGAAGACCATTGTTCAT+AGG | 0.382981 | 6_3:-23723625 | Msa0945100:CDS |
| AAAGTGGAAAATTGTGAAAA+GGG | 0.384909 | 6_3:+23724505 | None:intergenic |
| CTCTTCTAGTTCTTTAGCCA+TGG | 0.388816 | 6_3:+23721677 | None:intergenic |
| CCTGAAAGTGAGGGCTGTTA+AGG | 0.392789 | 6_3:+23723165 | None:intergenic |
| AGCTTATGTTCCTCTTTCAT+AGG | 0.396261 | 6_3:+23723455 | None:intergenic |
| TGTGAGGGATGAAATGGTTT+TGG | 0.397343 | 6_3:-23721604 | Msa0945100:CDS |
| TCTATGACAGGTTGCTGAAC+GGG | 0.405408 | 6_3:-23721913 | Msa0945100:intron |
| TTCGCCGGCGCCGCCGTGTT+CGG | 0.405760 | 6_3:+23724130 | None:intergenic |
| GGAAGAAGATGATACGTATA+TGG | 0.406126 | 6_3:-23723807 | Msa0945100:CDS |
| GAAAGTGGAAAATTGTGAAA+AGG | 0.411835 | 6_3:+23724504 | None:intergenic |
| TCAAGAAGAATTGATTTCAA+TGG | 0.412949 | 6_3:-23723900 | Msa0945100:CDS |
| TTCTTCCGGATCAACAGTTT+CGG | 0.412953 | 6_3:+23723823 | None:intergenic |
| GCTTCTTGACTTGTTTGATT+CGG | 0.417367 | 6_3:-23723669 | Msa0945100:CDS |
| CTGAACGGGCACTCTATTTG+TGG | 0.417879 | 6_3:-23721899 | Msa0945100:CDS |
| ATCTTGGAATCATTTACAAT+TGG | 0.420183 | 6_3:-23723780 | Msa0945100:CDS |
| TTGCTAAACGAGGAATATAT+AGG | 0.436115 | 6_3:-23721406 | Msa0945100:three_prime_UTR |
| GCCGTGTTCGGTGGTAGGTT+TGG | 0.442116 | 6_3:+23724142 | None:intergenic |
| CTGCAAAATGTAAGTTGTAA+AGG | 0.445410 | 6_3:-23721505 | Msa0945100:three_prime_UTR |
| TTTGAAACGCAGAGGCATAA+TGG | 0.455467 | 6_3:-23723530 | Msa0945100:CDS |
| ACCACCGAACACGGCGGCGC+CGG | 0.455592 | 6_3:-23724134 | Msa0945100:CDS |
| TCATAGACCATTTATAAGAA+AGG | 0.456138 | 6_3:-23723582 | Msa0945100:CDS |
| TAAGCTTAGTTGCTCAGAAT+CGG | 0.456737 | 6_3:-23721860 | Msa0945100:CDS |
| GCCTGTTACGAATTGTCATA+AGG | 0.457825 | 6_3:-23723288 | Msa0945100:CDS |
| GAGGAAGATGTTTCAGGAGA+TGG | 0.468462 | 6_3:-23721748 | Msa0945100:CDS |
| GTTCAGTTTGTTGAGAAAGA+TGG | 0.479857 | 6_3:-23723353 | Msa0945100:CDS |
| GGCTGTTGTGAGGGATGAAA+TGG | 0.485306 | 6_3:-23721610 | Msa0945100:CDS |
| CTGTTAGTCCATGCACTGCT+CGG | 0.490372 | 6_3:+23721778 | None:intergenic |
| GCGCCGCCGTGTTCGGTGGT+AGG | 0.492107 | 6_3:+23724137 | None:intergenic |
| ATGGACTAACAGCCAATTTG+AGG | 0.502250 | 6_3:-23721767 | Msa0945100:CDS |
| TCTTGACTTGTTTGATTCGG+AGG | 0.506190 | 6_3:-23723666 | Msa0945100:CDS |
| AGGTACCGAAACTGTTGATC+CGG | 0.513818 | 6_3:-23723828 | Msa0945100:CDS |
| AAATGCTTCGCGTTCTGGAA+CGG | 0.517298 | 6_3:+23724066 | None:intergenic |
| TGCAACTCTTCTTTCCACAT+TGG | 0.518358 | 6_3:-23721563 | Msa0945100:three_prime_UTR |
| GTGTTCGGTGGTAGGTTTGG+TGG | 0.519476 | 6_3:+23724145 | None:intergenic |
| ATACGTATATGGATCCATCT+TGG | 0.524496 | 6_3:-23723796 | Msa0945100:CDS |
| AAGAGAAGCGGGAGTTAACA+TGG | 0.525648 | 6_3:-23721659 | Msa0945100:CDS |
| CATGCACTGCTCGGTTCCAA+TGG | 0.527063 | 6_3:+23721787 | None:intergenic |
| ATTAGAAGCAGTGGCTGCAG+AGG | 0.528005 | 6_3:-23721631 | Msa0945100:CDS |
| AGAGTGTCATAAACAGTACT+TGG | 0.529899 | 6_3:-23721709 | Msa0945100:CDS |
| TAAAAGGGTTGGTGAAGTAT+TGG | 0.532511 | 6_3:-23723310 | Msa0945100:CDS |
| TAAAGAACTAGAAGAGAAGC+GGG | 0.537924 | 6_3:-23721670 | Msa0945100:CDS |
| GGCTGCAGAGGCTGTTGTGA+GGG | 0.539266 | 6_3:-23721619 | Msa0945100:CDS |
| ACCAAACCTACCACCGAACA+CGG | 0.540695 | 6_3:-23724143 | Msa0945100:CDS |
| CTAAAGAACTAGAAGAGAAG+CGG | 0.543956 | 6_3:-23721671 | Msa0945100:CDS |
| TGTTGAGAAAGATGGAAGGT+TGG | 0.544665 | 6_3:-23723345 | Msa0945100:CDS |
| CCAGCTTCTCATGAAAATAC+AGG | 0.544811 | 6_3:-23723848 | Msa0945100:CDS |
| AAATTGGATAAATAAGAAAG+TGG | 0.551619 | 6_3:+23724489 | None:intergenic |
| CTATACTATTCTAATATCAA+AGG | 0.551904 | 6_3:-23721214 | Msa0945100:three_prime_UTR |
| CGAAGAATGAAGATGAAGCA+TGG | 0.554497 | 6_3:+23724358 | None:intergenic |
| ATATACGTATCATCTTCTTC+CGG | 0.564865 | 6_3:+23723809 | None:intergenic |
| CATTGGAACCGAGCAGTGCA+TGG | 0.566645 | 6_3:-23721786 | Msa0945100:CDS |
| TCAATTACGATTTGATTCGC+CGG | 0.569345 | 6_3:+23724115 | None:intergenic |
| GCCGGCGCCGCCGTGTTCGG+TGG | 0.569440 | 6_3:+23724133 | None:intergenic |
| ATGGAAGAAATTAGAAGCAG+TGG | 0.571976 | 6_3:-23721640 | Msa0945100:CDS |
| AATTGTAAATGATTCCAAGA+TGG | 0.573096 | 6_3:+23723782 | None:intergenic |
| AACCCTAGAAATTGAATTTG+GGG | 0.573254 | 6_3:+23724330 | None:intergenic |
| TGGCTGATCCTGTGATAAAA+GGG | 0.573739 | 6_3:-23723325 | Msa0945100:CDS |
| ATTGCGTTACATTGTTGCAC+CGG | 0.573943 | 6_3:-23723744 | Msa0945100:CDS |
| TGGCTGCAGAGGCTGTTGTG+AGG | 0.575611 | 6_3:-23721620 | Msa0945100:CDS |
| ATCTATGACAGGTTGCTGAA+CGG | 0.577371 | 6_3:-23721914 | Msa0945100:intron |
| ACCATGCATCTCACAAACTC+AGG | 0.580540 | 6_3:+23723215 | None:intergenic |
| TGGTGGCTCGGAATTGAATG+TGG | 0.583083 | 6_3:+23724162 | None:intergenic |
| AACGTGCACACAGGAAATCA+GGG | 0.583099 | 6_3:-23724261 | Msa0945100:CDS |
| GGAACGGGGACTTCTTTGAG+TGG | 0.596222 | 6_3:+23724082 | None:intergenic |
| TCCTGAGTTTGTGAGATGCA+TGG | 0.599846 | 6_3:-23723216 | Msa0945100:CDS |
| CCCATAAATCCTATGAACAA+TGG | 0.606337 | 6_3:+23723616 | None:intergenic |
| TCATAAACAGTACTTGGAGA+AGG | 0.606701 | 6_3:-23721703 | Msa0945100:CDS |
| ACGGGGACTTCTTTGAGTGG+CGG | 0.617070 | 6_3:+23724085 | None:intergenic |
| GGAGCAAATTAATGAGCTCA+CGG | 0.620458 | 6_3:-23721438 | Msa0945100:three_prime_UTR |
| CTACAGGTGTGATGAACAAG+AGG | 0.621114 | 6_3:-23721459 | Msa0945100:three_prime_UTR |
| AGTTTGTTGAGAAAGATGGA+AGG | 0.622655 | 6_3:-23723349 | Msa0945100:CDS |
| TGACAACAGACCTGAAAGTG+AGG | 0.625602 | 6_3:+23723155 | None:intergenic |
| GTACTTGGAGAAGGAAGCCA+TGG | 0.629521 | 6_3:-23721694 | Msa0945100:CDS |
| ATGCTTCGCGTTCTGGAACG+GGG | 0.641500 | 6_3:+23724068 | None:intergenic |
| ACCCTAGAAATTGAATTTGG+GGG | 0.643592 | 6_3:+23724331 | None:intergenic |
| CAACTAGCTCGTAAAGTGTG+TGG | 0.647218 | 6_3:+23723960 | None:intergenic |
| GAAGCATGGAAACGAAGATG+CGG | 0.650396 | 6_3:+23724372 | None:intergenic |
| TTTCAGCAAAATCACCAATG+TGG | 0.653768 | 6_3:+23721549 | None:intergenic |
| TGATCCTGTGATAAAAGGGT+TGG | 0.656577 | 6_3:-23723321 | Msa0945100:CDS |
| GACAACAGACCTGAAAGTGA+GGG | 0.657970 | 6_3:+23723156 | None:intergenic |
| GAGAAGCTGGTGGTAAACAA+CGG | 0.669685 | 6_3:+23723861 | None:intergenic |
| AGATCATAAAACGTGCACAC+AGG | 0.671254 | 6_3:-23724270 | Msa0945100:CDS |
| AAACCTACCACCGAACACGG+CGG | 0.681437 | 6_3:-23724140 | Msa0945100:CDS |
| ATGCATCTCACAAACTCAGG+AGG | 0.694385 | 6_3:+23723218 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAATTAAAATAAAAT+TGG | + | chr6_3:23721254-23721273 | None:intergenic | 0.0% |
| !! | ATTAAGCTATAAAGTTTAAA+TGG | - | chr6_3:23723504-23723523 | Msa0945100:CDS | 15.0% |
| !! | ATTTATCATTTATCAAAAAC+AGG | + | chr6_3:23723715-23723734 | None:intergenic | 15.0% |
| !!! | GTACTTTTTGATTTTATTTT+TGG | - | chr6_3:23724377-23724396 | Msa0945100:five_prime_UTR | 15.0% |
| !!! | TAAAGTAAAGTAGTAAATTT+TGG | + | chr6_3:23724423-23724442 | None:intergenic | 15.0% |
| !! | AATGAATAAAAAACAAGAAA+GGG | + | chr6_3:23724558-23724577 | None:intergenic | 15.0% |
| !! | AAATTGGATAAATAAGAAAG+TGG | + | chr6_3:23721238-23721257 | None:intergenic | 20.0% |
| !! | TTAATAGCCTTTCTTATAAA+TGG | + | chr6_3:23722152-23722171 | None:intergenic | 20.0% |
| !! | ATTATGGCTAGTATTATAAA+TGG | - | chr6_3:23722236-23722255 | Msa0945100:intron | 20.0% |
| !!! | AACATAAGCTTTTTTTGATT+AGG | - | chr6_3:23722282-23722301 | Msa0945100:intron | 20.0% |
| !!! | ACATAAGCTTTTTTTGATTA+GGG | - | chr6_3:23722283-23722302 | Msa0945100:intron | 20.0% |
| !! | TGTTTATTGCAAAAAATACA+AGG | - | chr6_3:23722672-23722691 | Msa0945100:intron | 20.0% |
| !!! | GTACTGGTATATATATTTTT+GGG | - | chr6_3:23722987-23723006 | Msa0945100:intron | 20.0% |
| !!! | GTTCTTCAGTTATTTTTAAT+TGG | - | chr6_3:23723218-23723237 | Msa0945100:CDS | 20.0% |
| !!! | CATAATTTTATTTTAGCTAC+AGG | - | chr6_3:23724249-23724268 | Msa0945100:CDS | 20.0% |
| !! | CTATACTATTCTAATATCAA+AGG | - | chr6_3:23724510-23724529 | Msa0945100:five_prime_UTR | 20.0% |
| !! | GAATGAATAAAAAACAAGAA+AGG | + | chr6_3:23724559-23724578 | None:intergenic | 20.0% |
| ! | AAAGTGGAAAATTGTGAAAA+GGG | + | chr6_3:23721222-23721241 | None:intergenic | 25.0% |
| ! | AAACCCTAGAAATTGAATTT+GGG | + | chr6_3:23721398-23721417 | None:intergenic | 25.0% |
| ! | TAACAACTACTTCGTAAAAT+TGG | + | chr6_3:23721524-23721543 | None:intergenic | 25.0% |
| !! | TCAAGAAGAATTGATTTCAA+TGG | - | chr6_3:23721824-23721843 | Msa0945100:CDS | 25.0% |
| ! | AATTGTAAATGATTCCAAGA+TGG | + | chr6_3:23721945-23721964 | None:intergenic | 25.0% |
| ! | ATCTTGGAATCATTTACAAT+TGG | - | chr6_3:23721944-23721963 | Msa0945100:intron | 25.0% |
| ! | TCATAGACCATTTATAAGAA+AGG | - | chr6_3:23722142-23722161 | Msa0945100:intron | 25.0% |
| !!! | ATACATTTTGGTTTATGAAG+TGG | + | chr6_3:23722317-23722336 | None:intergenic | 25.0% |
| !! | TTTTCTTAATGAGTTAGAAG+AGG | - | chr6_3:23722466-23722485 | Msa0945100:intron | 25.0% |
| ! | AATTAAAGCAAAAGTGAATG+TGG | + | chr6_3:23722598-23722617 | None:intergenic | 25.0% |
| ! | TTTGTTGGATAACATACTTA+AGG | - | chr6_3:23722798-23722817 | Msa0945100:intron | 25.0% |
| !!! | TGTTCTTTTTCGTTAATTTC+AGG | - | chr6_3:23722964-23722983 | Msa0945100:intron | 25.0% |
| !!! | GTTCTTTTTCGTTAATTTCA+GGG | - | chr6_3:23722965-23722984 | Msa0945100:intron | 25.0% |
| !!! | GGTACTGGTATATATATTTT+TGG | - | chr6_3:23722986-23723005 | Msa0945100:intron | 25.0% |
| !!! | GGTATATATATTTTTGGGTT+AGG | - | chr6_3:23722992-23723011 | Msa0945100:intron | 25.0% |
| !!! | TTTTTGATTTGTTCTAGCAT+TGG | + | chr6_3:23723359-23723378 | None:intergenic | 25.0% |
| !!! | AGCTTGTTTTTATTTATCTC+TGG | - | chr6_3:23723475-23723494 | Msa0945100:CDS | 25.0% |
| !!! | GCTTGTTTTTATTTATCTCT+GGG | - | chr6_3:23723476-23723495 | Msa0945100:CDS | 25.0% |
| !!! | CTTGTTTTTATTTATCTCTG+GGG | - | chr6_3:23723477-23723496 | Msa0945100:CDS | 25.0% |
| ! | TAAAGTTTAAATGGCTTAGT+TGG | - | chr6_3:23723513-23723532 | Msa0945100:CDS | 25.0% |
| ! | AAAGTTTAAATGGCTTAGTT+GGG | - | chr6_3:23723514-23723533 | Msa0945100:CDS | 25.0% |
| ! | TACAATAGATTAATTGAAGC+AGG | + | chr6_3:23723559-23723578 | None:intergenic | 25.0% |
| ! | AAAGTAATACGAAAAACCAT+TGG | - | chr6_3:23723921-23723940 | Msa0945100:CDS | 25.0% |
| !! | TATTTTATCTGTATGACGAA+TGG | + | chr6_3:23724346-23724365 | None:intergenic | 25.0% |
| !!! | AAATTTTGGTTCCACTAAAA+AGG | + | chr6_3:23724409-23724428 | None:intergenic | 25.0% |
| GAAAGTGGAAAATTGTGAAA+AGG | + | chr6_3:23721223-23721242 | None:intergenic | 30.0% | |
| AACCCTAGAAATTGAATTTG+GGG | + | chr6_3:23721397-23721416 | None:intergenic | 30.0% | |
| GAAACCCTAGAAATTGAATT+TGG | + | chr6_3:23721399-23721418 | None:intergenic | 30.0% | |
| !! | AACATTTTCGAGGAATTTCT+TGG | + | chr6_3:23721429-23721448 | None:intergenic | 30.0% |
| ! | AACAGAGTTGAATTTTACGA+AGG | + | chr6_3:23721686-23721705 | None:intergenic | 30.0% |
| ATATACGTATCATCTTCTTC+CGG | + | chr6_3:23721918-23721937 | None:intergenic | 30.0% | |
| !!! | GCTATTTTAATATCAGTCTC+CGG | + | chr6_3:23722002-23722021 | None:intergenic | 30.0% |
| ATTTGAAGACCATTGTTCAT+AGG | - | chr6_3:23722099-23722118 | Msa0945100:intron | 30.0% | |
| ACCATTGTTCATAGGATTTA+TGG | - | chr6_3:23722107-23722126 | Msa0945100:intron | 30.0% | |
| CCATTGTTCATAGGATTTAT+GGG | - | chr6_3:23722108-23722127 | Msa0945100:intron | 30.0% | |
| TAGGATTTATGGGAAGTTTA+TGG | - | chr6_3:23722118-23722137 | Msa0945100:intron | 30.0% | |
| !! | GTTTTATATTTGAAACGCAG+AGG | - | chr6_3:23722186-23722205 | Msa0945100:intron | 30.0% |
| TTGTGAATTGCTTGAGATTA+TGG | - | chr6_3:23722220-23722239 | Msa0945100:intron | 30.0% | |
| ! | TGATACGACGAAATACATTT+TGG | + | chr6_3:23722329-23722348 | None:intergenic | 30.0% |
| TTGCAAAAAATACAAGGATG+TGG | - | chr6_3:23722678-23722697 | Msa0945100:intron | 30.0% | |
| !! | TGGTATTCTTAGCTTTAAGA+GGG | - | chr6_3:23722698-23722717 | Msa0945100:intron | 30.0% |
| GTTATCCAACAAAAGTAGAA+AGG | + | chr6_3:23722791-23722810 | None:intergenic | 30.0% | |
| TTGGATAACATACTTAAGGT+GGG | - | chr6_3:23722802-23722821 | Msa0945100:intron | 30.0% | |
| !!! | CTACTGTTTTTTCCTTATGT+TGG | - | chr6_3:23722868-23722887 | Msa0945100:intron | 30.0% |
| TTGATTATTCTCCCTTTGAT+AGG | + | chr6_3:23722935-23722954 | None:intergenic | 30.0% | |
| ! | ACACACTCTTTTTCTATGTT+AGG | + | chr6_3:23723140-23723159 | None:intergenic | 30.0% |
| ! | CCTTGCATTTTAAATGTTCT+TGG | + | chr6_3:23723179-23723198 | None:intergenic | 30.0% |
| ! | CCAAGAACATTTAAAATGCA+AGG | - | chr6_3:23723176-23723195 | Msa0945100:CDS | 30.0% |
| TTGATCACATTTAGCAACTT+GGG | + | chr6_3:23723245-23723264 | None:intergenic | 30.0% | |
| ATTGATCACATTTAGCAACT+TGG | + | chr6_3:23723246-23723265 | None:intergenic | 30.0% | |
| AAGTTTAAATGGCTTAGTTG+GGG | - | chr6_3:23723515-23723534 | Msa0945100:CDS | 30.0% | |
| TTACTACTCACTATTGTGAA+AGG | + | chr6_3:23723743-23723762 | None:intergenic | 30.0% | |
| TTCACAATAGTGAGTAGTAA+AGG | - | chr6_3:23723743-23723762 | Msa0945100:CDS | 30.0% | |
| CTGCAAAATGTAAGTTGTAA+AGG | - | chr6_3:23724219-23724238 | Msa0945100:CDS | 30.0% | |
| TTGCTAAACGAGGAATATAT+AGG | - | chr6_3:23724318-23724337 | Msa0945100:five_prime_UTR | 30.0% | |
| TTCCCCCAAATTCAATTTCT+AGG | - | chr6_3:23721391-23721410 | Msa0945100:three_prime_UTR | 35.0% | |
| TCCCCCAAATTCAATTTCTA+GGG | - | chr6_3:23721392-23721411 | Msa0945100:three_prime_UTR | 35.0% | |
| ACCCTAGAAATTGAATTTGG+GGG | + | chr6_3:23721396-23721415 | None:intergenic | 35.0% | |
| ! | GATCTTGTTGAACATTTTCG+AGG | + | chr6_3:23721439-23721458 | None:intergenic | 35.0% |
| ! | CACTGTTTGTTGAATCTTCA+GGG | + | chr6_3:23721500-23721519 | None:intergenic | 35.0% |
| ! | ACACTGTTTGTTGAATCTTC+AGG | + | chr6_3:23721501-23721520 | None:intergenic | 35.0% |
| ! | TCAATTACGATTTGATTCGC+CGG | + | chr6_3:23721612-23721631 | None:intergenic | 35.0% |
| GGAAGAAGATGATACGTATA+TGG | - | chr6_3:23721917-23721936 | Msa0945100:intron | 35.0% | |
| ATACGTATATGGATCCATCT+TGG | - | chr6_3:23721928-23721947 | Msa0945100:intron | 35.0% | |
| !! | GCTTCTTGACTTGTTTGATT+CGG | - | chr6_3:23722055-23722074 | Msa0945100:intron | 35.0% |
| CCCATAAATCCTATGAACAA+TGG | + | chr6_3:23722111-23722130 | None:intergenic | 35.0% | |
| ! | TTTTGCTTTGCCTATGAAAG+AGG | - | chr6_3:23722259-23722278 | Msa0945100:intron | 35.0% |
| AGCTTATGTTCCTCTTTCAT+AGG | + | chr6_3:23722272-23722291 | None:intergenic | 35.0% | |
| !! | GTTCAGTTTGTTGAGAAAGA+TGG | - | chr6_3:23722371-23722390 | Msa0945100:intron | 35.0% |
| !! | AGTTTGTTGAGAAAGATGGA+AGG | - | chr6_3:23722375-23722394 | Msa0945100:intron | 35.0% |
| !! | TAAAAGGGTTGGTGAAGTAT+TGG | - | chr6_3:23722414-23722433 | Msa0945100:intron | 35.0% |
| TCCTTATGACAATTCGTAAC+AGG | + | chr6_3:23722440-23722459 | None:intergenic | 35.0% | |
| ! | GTTTCTCTTTTCAGACAGAT+TGG | - | chr6_3:23722530-23722549 | Msa0945100:intron | 35.0% |
| ATCTGCACATGCAAAGTTTA+AGG | + | chr6_3:23722622-23722641 | None:intergenic | 35.0% | |
| !! | GTGGTATTCTTAGCTTTAAG+AGG | - | chr6_3:23722697-23722716 | Msa0945100:intron | 35.0% |
| !! | TCCATCCTTTCTACTTTTGT+TGG | - | chr6_3:23722783-23722802 | Msa0945100:intron | 35.0% |
| TCCAACAAAAGTAGAAAGGA+TGG | + | chr6_3:23722787-23722806 | None:intergenic | 35.0% | |
| GTTGGATAACATACTTAAGG+TGG | - | chr6_3:23722801-23722820 | Msa0945100:intron | 35.0% | |
| GGATGTTGGAATGATATACT+TGG | - | chr6_3:23722845-23722864 | Msa0945100:intron | 35.0% | |
| GAAGTTTCATGACCAACATA+AGG | + | chr6_3:23722883-23722902 | None:intergenic | 35.0% | |
| AGGTGAGAGAACAAAATACA+TGG | + | chr6_3:23722905-23722924 | None:intergenic | 35.0% | |
| ACCTTAGCTATCCTATCAAA+GGG | - | chr6_3:23722921-23722940 | Msa0945100:intron | 35.0% | |
| TTTCGTTAATTTCAGGGTAC+TGG | - | chr6_3:23722971-23722990 | Msa0945100:intron | 35.0% | |
| TGATCACATTTAGCAACTTG+GGG | + | chr6_3:23723244-23723263 | None:intergenic | 35.0% | |
| TTAGAGATGATCTAAGCCAT+AGG | - | chr6_3:23723416-23723435 | Msa0945100:CDS | 35.0% | |
| ATGATCTAAGCCATAGGATA+GGG | - | chr6_3:23723422-23723441 | Msa0945100:CDS | 35.0% | |
| AGCTAGTGTCCTAATTTGAA+AGG | + | chr6_3:23723660-23723679 | None:intergenic | 35.0% | |
| CTGTCAATTGAATCTATGAC+AGG | - | chr6_3:23723799-23723818 | Msa0945100:CDS | 35.0% | |
| TAAGCTTAGTTGCTCAGAAT+CGG | - | chr6_3:23723864-23723883 | Msa0945100:CDS | 35.0% | |
| !! | TCCAAAGCATCGAAGATTAT+TGG | + | chr6_3:23723902-23723921 | None:intergenic | 35.0% |
| CTGAAACATCTTCCTCAAAT+TGG | + | chr6_3:23723972-23723991 | None:intergenic | 35.0% | |
| CAATTTGAGGAAGATGTTTC+AGG | - | chr6_3:23723970-23723989 | Msa0945100:CDS | 35.0% | |
| ! | AGAGTGTCATAAACAGTACT+TGG | - | chr6_3:23724015-23724034 | Msa0945100:CDS | 35.0% |
| TCATAAACAGTACTTGGAGA+AGG | - | chr6_3:23724021-23724040 | Msa0945100:CDS | 35.0% | |
| CTAAAGAACTAGAAGAGAAG+CGG | - | chr6_3:23724053-23724072 | Msa0945100:CDS | 35.0% | |
| TAAAGAACTAGAAGAGAAGC+GGG | - | chr6_3:23724054-23724073 | Msa0945100:CDS | 35.0% | |
| ATGGAAGAAATTAGAAGCAG+TGG | - | chr6_3:23724084-23724103 | Msa0945100:CDS | 35.0% | |
| TTTCAGCAAAATCACCAATG+TGG | + | chr6_3:23724178-23724197 | None:intergenic | 35.0% | |
| ! | ATTTTGCAGTAATCTAGCAC+TGG | + | chr6_3:23724208-23724227 | None:intergenic | 35.0% |
| !! | GATCATGTTTTTGCTAAACG+AGG | - | chr6_3:23724308-23724327 | Msa0945100:five_prime_UTR | 35.0% |
| !! | TTTGGTTCCATCCTTTTTAG+TGG | - | chr6_3:23724395-23724414 | Msa0945100:five_prime_UTR | 35.0% |
| ! | TTTGGTTCCACTAAAAAGGA+TGG | + | chr6_3:23724405-23724424 | None:intergenic | 35.0% |
| CGAAGAATGAAGATGAAGCA+TGG | + | chr6_3:23721369-23721388 | None:intergenic | 40.0% | |
| AGATCATAAAACGTGCACAC+AGG | - | chr6_3:23721454-23721473 | Msa0945100:three_prime_UTR | 40.0% | |
| ! | GTATTTTCATGAGAAGCTGG+TGG | + | chr6_3:23721876-23721895 | None:intergenic | 40.0% |
| ! | CCTGTATTTTCATGAGAAGC+TGG | + | chr6_3:23721879-23721898 | None:intergenic | 40.0% |
| CCAGCTTCTCATGAAAATAC+AGG | - | chr6_3:23721876-23721895 | Msa0945100:CDS | 40.0% | |
| TTCTTCCGGATCAACAGTTT+CGG | + | chr6_3:23721904-23721923 | None:intergenic | 40.0% | |
| ATTGCGTTACATTGTTGCAC+CGG | - | chr6_3:23721980-23721999 | Msa0945100:intron | 40.0% | |
| !! | TCTTGACTTGTTTGATTCGG+AGG | - | chr6_3:23722058-23722077 | Msa0945100:intron | 40.0% |
| ! | TTTGAAACGCAGAGGCATAA+TGG | - | chr6_3:23722194-23722213 | Msa0945100:intron | 40.0% |
| TGTTGAGAAAGATGGAAGGT+TGG | - | chr6_3:23722379-23722398 | Msa0945100:intron | 40.0% | |
| TTGGCTGATCCTGTGATAAA+AGG | - | chr6_3:23722398-23722417 | Msa0945100:intron | 40.0% | |
| TGGCTGATCCTGTGATAAAA+GGG | - | chr6_3:23722399-23722418 | Msa0945100:intron | 40.0% | |
| TGATCCTGTGATAAAAGGGT+TGG | - | chr6_3:23722403-23722422 | Msa0945100:intron | 40.0% | |
| ! | TTCACCAACCCTTTTATCAC+AGG | + | chr6_3:23722410-23722429 | None:intergenic | 40.0% |
| GCCTGTTACGAATTGTCATA+AGG | - | chr6_3:23722436-23722455 | Msa0945100:intron | 40.0% | |
| ! | CTCTTTTCAGACAGATTGGT+CGG | - | chr6_3:23722534-23722553 | Msa0945100:intron | 40.0% |
| !! | AGGGATGTTTGCTTTTGATC+AGG | - | chr6_3:23722717-23722736 | Msa0945100:intron | 40.0% |
| ! | TTAAGGTGGGAGCTTTTGTA+TGG | - | chr6_3:23722815-23722834 | Msa0945100:intron | 40.0% |
| ! | TAAGGTGGGAGCTTTTGTAT+GGG | - | chr6_3:23722816-23722835 | Msa0945100:intron | 40.0% |
| CACCTTAGCTATCCTATCAA+AGG | - | chr6_3:23722920-23722939 | Msa0945100:intron | 40.0% | |
| TCCCTTTGATAGGATAGCTA+AGG | + | chr6_3:23722925-23722944 | None:intergenic | 40.0% | |
| CACGTTAATGACATGAAGAG+TGG | - | chr6_3:23723042-23723061 | Msa0945100:intron | 40.0% | |
| AATGACATGAAGAGTGGTAG+AGG | - | chr6_3:23723048-23723067 | Msa0945100:intron | 40.0% | |
| GATGATCTAAGCCATAGGAT+AGG | - | chr6_3:23723421-23723440 | Msa0945100:CDS | 40.0% | |
| ATCTATGACAGGTTGCTGAA+CGG | - | chr6_3:23723810-23723829 | Msa0945100:CDS | 40.0% | |
| GCCAATAATCTTCGATGCTT+TGG | - | chr6_3:23723898-23723917 | Msa0945100:CDS | 40.0% | |
| ! | ATGGACTAACAGCCAATTTG+AGG | - | chr6_3:23723957-23723976 | Msa0945100:CDS | 40.0% |
| !! | CTCTTCTAGTTCTTTAGCCA+TGG | + | chr6_3:23724050-23724069 | None:intergenic | 40.0% |
| ! | TGTGAGGGATGAAATGGTTT+TGG | - | chr6_3:23724120-23724139 | Msa0945100:CDS | 40.0% |
| TGCAACTCTTCTTTCCACAT+TGG | - | chr6_3:23724161-23724180 | Msa0945100:CDS | 40.0% | |
| GGAGCAAATTAATGAGCTCA+CGG | - | chr6_3:23724286-23724305 | Msa0945100:exon | 40.0% | |
| GAAGCATGGAAACGAAGATG+CGG | + | chr6_3:23721355-23721374 | None:intergenic | 45.0% | |
| AAACGTGCACACAGGAAATC+AGG | - | chr6_3:23721462-23721481 | Msa0945100:three_prime_UTR | 45.0% | |
| AACGTGCACACAGGAAATCA+GGG | - | chr6_3:23721463-23721482 | Msa0945100:three_prime_UTR | 45.0% | |
| !! | AAATGCTTCGCGTTCTGGAA+CGG | + | chr6_3:23721661-23721680 | None:intergenic | 45.0% |
| AGGAAAAATGCTTCGCGTTC+TGG | + | chr6_3:23721666-23721685 | None:intergenic | 45.0% | |
| CAACTAGCTCGTAAAGTGTG+TGG | + | chr6_3:23721767-23721786 | None:intergenic | 45.0% | |
| GAGAAGCTGGTGGTAAACAA+CGG | + | chr6_3:23721866-23721885 | None:intergenic | 45.0% | |
| !! | AGGTACCGAAACTGTTGATC+CGG | - | chr6_3:23721896-23721915 | Msa0945100:CDS | 45.0% |
| ATGCATCTCACAAACTCAGG+AGG | + | chr6_3:23722509-23722528 | None:intergenic | 45.0% | |
| TCCTGAGTTTGTGAGATGCA+TGG | - | chr6_3:23722508-23722527 | Msa0945100:intron | 45.0% | |
| ACCATGCATCTCACAAACTC+AGG | + | chr6_3:23722512-23722531 | None:intergenic | 45.0% | |
| GACAACAGACCTGAAAGTGA+GGG | + | chr6_3:23722571-23722590 | None:intergenic | 45.0% | |
| TGACAACAGACCTGAAAGTG+AGG | + | chr6_3:23722572-23722591 | None:intergenic | 45.0% | |
| !! | GAGCTTTTGTATGGGTTGCT+TGG | - | chr6_3:23722824-23722843 | Msa0945100:intron | 45.0% |
| ! | TGTATGGGTTGCTTGGATGT+TGG | - | chr6_3:23722831-23722850 | Msa0945100:intron | 45.0% |
| TGAAGAGTGGTAGAGGAAGA+AGG | - | chr6_3:23723055-23723074 | Msa0945100:intron | 45.0% | |
| ! | TGGAGTGGTATCTAGAGTAG+AGG | - | chr6_3:23723097-23723116 | Msa0945100:intron | 45.0% |
| ! | GGAGTGGTATCTAGAGTAGA+GGG | - | chr6_3:23723098-23723117 | Msa0945100:intron | 45.0% |
| ! | TGGTATCTAGAGTAGAGGGA+GGG | - | chr6_3:23723102-23723121 | Msa0945100:intron | 45.0% |
| ! | GTTCTAGCATTGGAGTTGAG+TGG | + | chr6_3:23723349-23723368 | None:intergenic | 45.0% |
| CCACATATCACCCTATCCTA+TGG | + | chr6_3:23723435-23723454 | None:intergenic | 45.0% | |
| CCATAGGATAGGGTGATATG+TGG | - | chr6_3:23723432-23723451 | Msa0945100:CDS | 45.0% | |
| ! | ATGCCTTGCTGTGATTTGCA+GGG | - | chr6_3:23723607-23723626 | Msa0945100:CDS | 45.0% |
| GGTTCAGGGCCTTTCAAATT+AGG | - | chr6_3:23723648-23723667 | Msa0945100:CDS | 45.0% | |
| TCTATGACAGGTTGCTGAAC+GGG | - | chr6_3:23723811-23723830 | Msa0945100:CDS | 45.0% | |
| GAGGAAGATGTTTCAGGAGA+TGG | - | chr6_3:23723976-23723995 | Msa0945100:CDS | 45.0% | |
| AAGAGAAGCGGGAGTTAACA+TGG | - | chr6_3:23724065-23724084 | Msa0945100:CDS | 45.0% | |
| CTACAGGTGTGATGAACAAG+AGG | - | chr6_3:23724265-23724284 | Msa0945100:CDS | 45.0% | |
| ! | TGGTGGCTCGGAATTGAATG+TGG | + | chr6_3:23721565-23721584 | None:intergenic | 50.0% |
| ACCAAACCTACCACCGAACA+CGG | - | chr6_3:23721581-23721600 | Msa0945100:exon | 50.0% | |
| !! | AATGCTTCGCGTTCTGGAAC+GGG | + | chr6_3:23721660-23721679 | None:intergenic | 50.0% |
| CCTGAAAGTGAGGGCTGTTA+AGG | + | chr6_3:23722562-23722581 | None:intergenic | 50.0% | |
| CCTTAACAGCCCTCACTTTC+AGG | - | chr6_3:23722559-23722578 | Msa0945100:intron | 50.0% | |
| GAGCAGCTGAGGGATATTAG+TGG | - | chr6_3:23723077-23723096 | Msa0945100:intron | 50.0% | |
| GCTGAGGGATATTAGTGGAG+TGG | - | chr6_3:23723082-23723101 | Msa0945100:intron | 50.0% | |
| ! | GTGGTATCTAGAGTAGAGGG+AGG | - | chr6_3:23723101-23723120 | Msa0945100:intron | 50.0% |
| ! | AGCATTGGAGTTGAGTGGCA+TGG | + | chr6_3:23723344-23723363 | None:intergenic | 50.0% |
| ! | GATGCCTTGCTGTGATTTGC+AGG | - | chr6_3:23723606-23723625 | Msa0945100:CDS | 50.0% |
| GAACCCAACACAGATTCCCA+AGG | + | chr6_3:23723633-23723652 | None:intergenic | 50.0% | |
| TGGGAATCTGTGTTGGGTTC+AGG | - | chr6_3:23723633-23723652 | Msa0945100:CDS | 50.0% | |
| GGGAATCTGTGTTGGGTTCA+GGG | - | chr6_3:23723634-23723653 | Msa0945100:CDS | 50.0% | |
| CTGAACGGGCACTCTATTTG+TGG | - | chr6_3:23723825-23723844 | Msa0945100:CDS | 50.0% | |
| CTGTTAGTCCATGCACTGCT+CGG | + | chr6_3:23723949-23723968 | None:intergenic | 50.0% | |
| GTACTTGGAGAAGGAAGCCA+TGG | - | chr6_3:23724030-23724049 | Msa0945100:CDS | 50.0% | |
| ATTAGAAGCAGTGGCTGCAG+AGG | - | chr6_3:23724093-23724112 | Msa0945100:CDS | 50.0% | |
| GGCTGTTGTGAGGGATGAAA+TGG | - | chr6_3:23724114-23724133 | Msa0945100:CDS | 50.0% | |
| ! | GTGTTCGGTGGTAGGTTTGG+TGG | + | chr6_3:23721582-23721601 | None:intergenic | 55.0% |
| AAACCTACCACCGAACACGG+CGG | - | chr6_3:23721584-23721603 | Msa0945100:exon | 55.0% | |
| ACGGGGACTTCTTTGAGTGG+CGG | + | chr6_3:23721642-23721661 | None:intergenic | 55.0% | |
| GGAACGGGGACTTCTTTGAG+TGG | + | chr6_3:23721645-23721664 | None:intergenic | 55.0% | |
| !! | ATGCTTCGCGTTCTGGAACG+GGG | + | chr6_3:23721659-23721678 | None:intergenic | 55.0% |
| AGAGGAAGAAGGAGCAGCTG+AGG | - | chr6_3:23723066-23723085 | Msa0945100:intron | 55.0% | |
| GAGGAAGAAGGAGCAGCTGA+GGG | - | chr6_3:23723067-23723086 | Msa0945100:intron | 55.0% | |
| AGGCCCTGCAAATCACAGCA+AGG | + | chr6_3:23723613-23723632 | None:intergenic | 55.0% | |
| ! | TGCTGTGATTTGCAGGGCCT+TGG | - | chr6_3:23723613-23723632 | Msa0945100:CDS | 55.0% |
| ! | GCTGTGATTTGCAGGGCCTT+GGG | - | chr6_3:23723614-23723633 | Msa0945100:CDS | 55.0% |
| AGGGCCTTGGGAATCTGTGT+TGG | - | chr6_3:23723626-23723645 | Msa0945100:CDS | 55.0% | |
| GGGCCTTGGGAATCTGTGTT+GGG | - | chr6_3:23723627-23723646 | Msa0945100:CDS | 55.0% | |
| CATGCACTGCTCGGTTCCAA+TGG | + | chr6_3:23723940-23723959 | None:intergenic | 55.0% | |
| CATTGGAACCGAGCAGTGCA+TGG | - | chr6_3:23723938-23723957 | Msa0945100:CDS | 55.0% | |
| !! | CGGTGGTAGGTTTGGTGGCT+CGG | + | chr6_3:23721577-23721596 | None:intergenic | 60.0% |
| ! | GCCGTGTTCGGTGGTAGGTT+TGG | + | chr6_3:23721585-23721604 | None:intergenic | 60.0% |
| TGGCTGCAGAGGCTGTTGTG+AGG | - | chr6_3:23724104-23724123 | Msa0945100:CDS | 60.0% | |
| GGCTGCAGAGGCTGTTGTGA+GGG | - | chr6_3:23724105-23724124 | Msa0945100:CDS | 60.0% | |
| ! | GCGCCGCCGTGTTCGGTGGT+AGG | + | chr6_3:23721590-23721609 | None:intergenic | 75.0% |
| ACCACCGAACACGGCGGCGC+CGG | - | chr6_3:23721590-23721609 | Msa0945100:exon | 75.0% | |
| TTCGCCGGCGCCGCCGTGTT+CGG | + | chr6_3:23721597-23721616 | None:intergenic | 75.0% | |
| ! | GCCGGCGCCGCCGTGTTCGG+TGG | + | chr6_3:23721594-23721613 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 23721160 | 23724586 | 23721160 | ID=Msa0945100;Name=Msa0945100 |
| chr6_3 | mRNA | 23721160 | 23724586 | 23721160 | ID=Msa0945100-mRNA-1;Parent=Msa0945100;Name=Msa0945100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=284|1|1|1|1|1|2|436|488 |
| chr6_3 | exon | 23721160 | 23721925 | 23721160 | ID=Msa0945100-mRNA-1:exon:6645;Parent=Msa0945100-mRNA-1 |
| chr6_3 | exon | 23723166 | 23724586 | 23723166 | ID=Msa0945100-mRNA-1:exon:6644;Parent=Msa0945100-mRNA-1 |
| chr6_3 | five_prime_UTR | 23724303 | 23724586 | 23724303 | ID=Msa0945100-mRNA-1:five_prime_utr;Parent=Msa0945100-mRNA-1 |
| chr6_3 | CDS | 23723166 | 23724302 | 23723166 | ID=Msa0945100-mRNA-1:cds;Parent=Msa0945100-mRNA-1 |
| chr6_3 | CDS | 23721596 | 23721925 | 23721596 | ID=Msa0945100-mRNA-1:cds;Parent=Msa0945100-mRNA-1 |
| chr6_3 | three_prime_UTR | 23721160 | 23721595 | 23721160 | ID=Msa0945100-mRNA-1:three_prime_utr;Parent=Msa0945100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
