AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1300210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300210 MtrunA17_Chr4g0061671 94.152 171 10 0 1 171 1 171 3.25e-117 332
Msa1300210 MtrunA17_Chr6g0455511 54.510 255 105 4 1 249 1 250 1.01e-84 253
Msa1300210 MtrunA17_Chr7g0220111 53.333 255 107 5 1 249 1 249 2.19e-83 249
Msa1300210 MtrunA17_Chr5g0420091 56.054 223 88 3 1 221 1 215 5.45e-79 237
Msa1300210 MtrunA17_Chr3g0122251 55.510 245 90 7 1 235 1 236 2.95e-78 236
Msa1300210 MtrunA17_Chr8g0351051 52.632 228 96 7 1 222 1 222 2.16e-62 196
Msa1300210 MtrunA17_Chr4g0061691 55.952 168 72 1 1 166 1 168 1.70e-57 182
Msa1300210 MtrunA17_Chr8g0366231 55.882 170 69 3 1 166 1 168 1.83e-57 183
Msa1300210 MtrunA17_Chr5g0420081 43.145 248 115 5 1 243 1 227 1.84e-55 177
Msa1300210 MtrunA17_Chr7g0220121 43.172 227 116 6 1 219 1 222 3.09e-49 162
Msa1300210 MtrunA17_Chr6g0474371 47.977 173 87 2 1 170 1 173 2.74e-46 152
Msa1300210 MtrunA17_Chr3g0077501 41.964 224 118 6 1 213 1 223 3.19e-46 153
Msa1300210 MtrunA17_Chr4g0061681 88.889 81 2 2 169 249 4 77 2.62e-45 146
Msa1300210 MtrunA17_Chr8g0380021 41.753 194 108 3 1 192 17 207 3.44e-45 151
Msa1300210 MtrunA17_Chr2g0284911 44.886 176 94 2 1 174 16 190 8.72e-45 151
Msa1300210 MtrunA17_Chr3g0097101 44.693 179 96 2 1 177 16 193 4.12e-43 146
Msa1300210 MtrunA17_Chr4g0057151 48.810 168 83 3 1 166 1 167 5.00e-43 145
Msa1300210 MtrunA17_Chr1g0204111 46.243 173 89 2 1 170 17 188 1.39e-42 145
Msa1300210 MtrunA17_Chr7g0246431 47.674 172 79 4 1 166 1 167 1.52e-42 144
Msa1300210 MtrunA17_Chr8g0351031 44.186 172 92 3 1 169 1 171 1.96e-42 144
Msa1300210 MtrunA17_Chr2g0279821 41.860 172 98 2 1 171 1 171 1.36e-41 142
Msa1300210 MtrunA17_Chr8g0351041 43.210 162 88 3 1 159 1 161 9.66e-40 135
Msa1300210 MtrunA17_Chr8g0377551 43.478 184 94 3 63 242 1 178 4.55e-36 126
Msa1300210 MtrunA17_Chr4g0049541 38.953 172 103 2 1 171 1 171 4.71e-36 127
Msa1300210 MtrunA17_Chr4g0018421 41.420 169 96 2 1 166 1 169 1.73e-34 122
Msa1300210 MtrunA17_Chr5g0411691 36.471 170 107 1 1 170 1 169 7.03e-34 122
Msa1300210 MtrunA17_Chr8g0377561 96.552 58 2 0 1 58 1 58 1.47e-33 117
Msa1300210 MtrunA17_Chr5g0412461 36.493 211 126 4 1 204 1 210 1.08e-32 119
Msa1300210 MtrunA17_Chr5g0412271 40.237 169 98 2 1 167 1 168 4.29e-32 117
Msa1300210 MtrunA17_Chr7g0246381 86.885 61 8 0 1 61 1 61 8.99e-32 111
Msa1300210 MtrunA17_Chr4g0020221 37.433 187 90 4 1 172 1 175 3.13e-31 115
Msa1300210 MtrunA17_Chr2g0308251 68.000 75 24 0 1 75 1 75 4.95e-31 110
Msa1300210 MtrunA17_Chr5g0427401 36.628 172 104 3 1 170 1 169 6.80e-31 114
Msa1300210 MtrunA17_Chr3g0125241 43.056 144 78 2 1 143 26 166 7.84e-31 113
Msa1300210 MtrunA17_Chr1g0164791 36.464 181 91 4 1 166 1 172 3.06e-30 112
Msa1300210 MtrunA17_Chr1g0159661 42.069 145 80 2 1 144 1 142 2.53e-28 106
Msa1300210 MtrunA17_Chr4g0049901 33.171 205 120 4 1 191 27 228 2.89e-28 107
Msa1300210 MtrunA17_Chr1g0173161 69.565 69 21 0 1 69 1 69 4.88e-27 100
Msa1300210 MtrunA17_Chr3g0142191 39.735 151 85 3 1 149 1 147 9.74e-25 98.2
Msa1300210 MtrunA17_Chr5g0427921 63.333 60 22 0 1 60 1 60 2.08e-23 89.7
Msa1300210 MtrunA17_Chr5g0404951 31.250 176 117 2 1 173 1 175 1.15e-21 90.1
Msa1300210 MtrunA17_Chr4g0044071 63.793 58 21 0 1 58 1 58 9.33e-21 84.3
Msa1300210 MtrunA17_Chr5g0425191 65.517 58 20 0 1 58 1 58 1.45e-20 83.6
Msa1300210 MtrunA17_Chr3g0134451 57.143 70 30 0 1 70 1 70 1.77e-20 88.6
Msa1300210 MtrunA17_Chr2g0308271 34.000 150 85 4 28 174 9 147 1.23e-19 84.0
Msa1300210 MtrunA17_Chr2g0292791 33.480 227 123 10 2 219 9 216 2.14e-18 81.3
Msa1300210 MtrunA17_Chr1g0166611 77.778 45 10 0 16 60 20 64 2.54e-18 78.6
Msa1300210 MtrunA17_Chr1g0206701 29.876 241 128 11 2 225 9 225 8.43e-17 77.0
Msa1300210 MtrunA17_Chr8g0379021 34.043 141 75 5 2 126 12 150 6.65e-15 70.5
Msa1300210 MtrunA17_Chr3g0089141 51.786 56 27 0 2 57 9 64 9.42e-15 71.2
Msa1300210 MtrunA17_Chr1g0208561 51.786 56 27 0 2 57 9 64 9.42e-15 71.2
Msa1300210 MtrunA17_Chr1g0208581 28.936 235 117 13 2 220 9 209 1.08e-14 71.2
Msa1300210 MtrunA17_Chr5g0417661 54.717 53 24 0 1 53 56 108 1.52e-14 68.6
Msa1300210 MtrunA17_Chr2g0333981 40.000 95 55 2 1 95 11 103 1.81e-14 69.3
Msa1300210 MtrunA17_Chr8g0376821 35.821 134 65 4 1 131 1 116 2.34e-14 69.3
Msa1300210 MtrunA17_Chr3g0099421 55.357 56 25 0 2 57 34 89 2.42e-14 70.5
Msa1300210 MtrunA17_Chr2g0325971 50.000 56 28 0 2 57 9 64 2.90e-14 70.1
Msa1300210 MtrunA17_Chr8g0357771 46.774 62 33 0 1 62 1 62 3.78e-14 68.6
Msa1300210 MtrunA17_Chr1g0149391 55.357 56 25 0 2 57 9 64 5.25e-14 69.3
Msa1300210 MtrunA17_Chr3g0099411 51.786 56 27 0 2 57 9 64 6.47e-14 68.9
Msa1300210 MtrunA17_Chr5g0419601 54.386 57 26 0 1 57 8 64 8.22e-14 68.9
Msa1300210 MtrunA17_Chr1g0206721 51.786 56 27 0 2 57 9 64 1.04e-13 68.6
Msa1300210 MtrunA17_Chr8g0355091 51.786 56 27 0 2 57 9 64 1.12e-13 68.6
Msa1300210 MtrunA17_Chr1g0175611 35.036 137 72 6 1 136 1 121 1.19e-13 67.0
Msa1300210 MtrunA17_Chr4g0052061 45.902 61 33 0 1 61 1 61 1.82e-13 66.2
Msa1300210 MtrunA17_Chr1g0187361 51.786 56 27 0 2 57 9 64 1.86e-13 67.8
Msa1300210 MtrunA17_Chr1g0169761 50.877 57 28 0 1 57 1 57 2.26e-13 66.6
Msa1300210 MtrunA17_Chr2g0317451 52.632 57 27 0 2 58 9 65 2.38e-13 67.4
Msa1300210 MtrunA17_Chr1g0188671 51.786 56 27 0 2 57 47 102 2.41e-13 68.2
Msa1300210 MtrunA17_Chr2g0317481 52.632 57 27 0 2 58 9 65 2.60e-13 67.4
Msa1300210 MtrunA17_Chr5g0422421 53.571 56 26 0 2 57 9 64 5.86e-13 66.2
Msa1300210 MtrunA17_Chr5g0422941 53.571 56 26 0 2 57 9 64 7.97e-13 66.2
Msa1300210 MtrunA17_Chr4g0060841 50.943 53 26 0 1 53 1 53 8.01e-13 67.0
Msa1300210 MtrunA17_Chr1g0206991 33.974 156 82 6 2 155 9 145 8.38e-13 65.1
Msa1300210 MtrunA17_Chr1g0175601 31.447 159 86 5 1 154 1 141 8.53e-13 65.1
Msa1300210 MtrunA17_Chr1g0180591 47.368 57 30 0 1 57 1 57 9.27e-13 64.7
Msa1300210 MtrunA17_Chr4g0052081 45.763 59 32 0 1 59 1 59 1.16e-12 64.7
Msa1300210 MtrunA17_Chr4g0074101 47.368 57 30 0 1 57 1 57 1.28e-12 64.7
Msa1300210 MtrunA17_Chr2g0300421 48.214 56 29 0 2 57 9 64 1.78e-12 63.9
Msa1300210 MtrunA17_Chr4g0018951 32.394 142 76 6 16 146 26 158 2.86e-12 63.2
Msa1300210 MtrunA17_Chr3g0085241 29.167 168 97 6 1 148 40 205 3.92e-12 64.3
Msa1300210 MtrunA17_Chr3g0119901 28.571 168 98 6 1 148 8 173 4.61e-12 63.5
Msa1300210 MtrunA17_Chr4g0071601 42.105 95 53 2 1 95 11 103 1.32e-11 61.6
Msa1300210 MtrunA17_Chr8g0356071 42.623 61 35 0 1 61 1 61 3.16e-11 60.1
Msa1300210 MtrunA17_Chr2g0300441 48.276 58 28 1 2 57 7 64 3.63e-11 61.2
Msa1300210 MtrunA17_Chr3g0089151 44.643 56 31 0 2 57 9 64 4.79e-11 58.9
Msa1300210 MtrunA17_Chr3g0111841 50.000 54 27 0 8 61 2 55 8.45e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300210 AT2G03710.2 51.894 264 105 6 1 249 1 257 2.83e-79 239
Msa1300210 AT2G03710.1 51.698 265 105 6 1 249 1 258 4.01e-79 239
Msa1300210 AT3G02310.1 53.937 254 108 7 1 249 1 250 4.95e-79 238
Msa1300210 AT5G15800.1 54.150 253 110 5 1 249 1 251 1.36e-78 237
Msa1300210 AT5G15800.2 68.966 174 52 2 1 172 1 174 2.06e-77 235
Msa1300210 AT1G24260.1 56.388 227 89 4 1 222 1 222 4.49e-76 231
Msa1300210 AT1G24260.2 56.140 228 89 4 1 222 1 223 6.09e-76 231
Msa1300210 AT2G03710.3 66.279 172 56 2 1 170 1 172 8.34e-76 228
Msa1300210 AT3G02310.2 67.251 171 54 2 1 169 1 171 3.24e-75 227
Msa1300210 AT1G24260.3 66.875 160 48 1 1 155 1 160 1.46e-69 214
Msa1300210 AT1G69120.2 52.809 178 82 2 1 176 1 178 1.77e-60 191
Msa1300210 AT1G69120.1 52.809 178 82 2 1 176 1 178 8.20e-60 190
Msa1300210 AT1G26310.1 44.355 248 125 5 1 243 1 240 3.33e-59 188
Msa1300210 AT5G60910.1 45.701 221 105 5 1 213 1 214 4.26e-58 185
Msa1300210 AT2G45650.1 56.395 172 73 2 1 171 1 171 7.36e-58 184
Msa1300210 AT3G61120.1 44.978 229 107 6 1 222 1 217 1.63e-50 166
Msa1300210 AT4G09960.6 43.810 210 106 5 1 199 2 210 1.10e-48 160
Msa1300210 AT4G09960.1 43.810 210 106 5 1 199 1 209 1.17e-48 160
Msa1300210 AT4G09960.5 43.810 210 106 5 1 199 11 219 1.44e-48 160
Msa1300210 AT4G09960.3 43.810 210 106 5 1 199 27 235 4.47e-48 159
Msa1300210 AT4G18960.1 44.660 206 104 5 2 205 18 215 9.17e-48 159
Msa1300210 AT4G09960.4 42.991 214 106 6 1 199 96 308 3.63e-45 154
Msa1300210 AT4G22950.2 49.143 175 81 4 1 171 1 171 5.24e-44 146
Msa1300210 AT4G09960.2 42.857 210 94 6 1 199 1 195 6.38e-44 147
Msa1300210 AT2G42830.1 45.251 179 95 2 1 177 16 193 1.02e-43 148
Msa1300210 AT2G45660.1 44.444 171 92 2 1 169 1 170 1.14e-43 147
Msa1300210 AT3G58780.5 44.444 180 93 3 1 176 22 198 2.10e-43 147
Msa1300210 AT3G58780.1 44.444 180 93 3 1 176 16 192 2.26e-43 147
Msa1300210 AT4G22950.3 49.123 171 83 3 1 169 1 169 2.32e-43 146
Msa1300210 AT4G22950.1 49.123 171 83 3 1 169 1 169 2.32e-43 146
Msa1300210 AT5G62165.3 45.614 171 90 2 1 169 1 170 2.51e-43 146
Msa1300210 AT5G62165.1 45.614 171 90 2 1 169 1 170 2.51e-43 146
Msa1300210 AT5G62165.2 45.614 171 90 2 1 169 1 170 2.51e-43 146
Msa1300210 AT4G11880.2 49.375 160 78 2 1 158 1 159 8.42e-42 141
Msa1300210 AT4G11880.3 49.375 160 78 2 1 158 1 159 8.42e-42 141
Msa1300210 AT2G42830.2 44.505 182 94 4 1 177 16 195 8.79e-42 143
Msa1300210 AT2G45660.2 45.223 157 83 2 1 155 1 156 1.05e-41 140
Msa1300210 AT3G30260.1 46.711 152 79 1 1 150 1 152 1.91e-41 142
Msa1300210 AT5G62165.17 46.753 154 79 2 1 152 1 153 2.08e-41 139
Msa1300210 AT5G62165.12 46.753 154 79 2 1 152 1 153 2.08e-41 139
Msa1300210 AT5G62165.11 46.753 154 79 2 1 152 1 153 2.08e-41 139
Msa1300210 AT4G11880.4 52.381 147 67 2 1 145 1 146 9.13e-41 140
Msa1300210 AT4G11880.1 52.381 147 67 2 1 145 1 146 9.13e-41 140
Msa1300210 AT3G58780.2 42.614 176 95 1 1 176 16 185 2.71e-40 139
Msa1300210 AT5G62165.10 44.375 160 86 2 1 158 1 159 3.32e-40 137
Msa1300210 AT5G62165.4 44.375 160 86 2 1 158 1 159 3.32e-40 137
Msa1300210 AT3G58780.3 39.216 204 94 3 1 176 16 217 1.29e-39 138
Msa1300210 AT5G62165.6 46.259 147 76 2 1 145 1 146 2.62e-39 134
Msa1300210 AT5G62165.9 46.259 147 76 2 1 145 1 146 2.62e-39 134
Msa1300210 AT5G62165.7 46.259 147 76 2 1 145 1 146 2.62e-39 134
Msa1300210 AT5G62165.8 46.259 147 76 2 1 145 1 146 2.62e-39 134
Msa1300210 AT5G62165.13 46.259 147 76 2 1 145 1 146 2.62e-39 134
Msa1300210 AT3G58780.4 48.000 150 71 3 1 146 16 162 1.17e-38 136
Msa1300210 AT3G57230.1 36.735 196 108 3 1 181 1 195 3.04e-38 134
Msa1300210 AT3G57230.4 36.735 196 108 3 1 181 1 195 3.04e-38 134
Msa1300210 AT4G37940.1 38.372 172 104 2 1 171 1 171 1.47e-36 129
Msa1300210 AT5G10140.4 43.226 155 82 1 1 155 1 149 2.32e-36 127
Msa1300210 AT5G10140.2 45.205 146 74 1 1 146 1 140 2.59e-36 127
Msa1300210 AT5G10140.1 43.275 171 91 1 1 171 1 165 3.35e-36 127
Msa1300210 AT5G10140.3 45.205 146 74 1 1 146 1 140 6.00e-36 126
Msa1300210 AT3G57230.2 46.043 139 73 2 1 138 1 138 6.65e-36 125
Msa1300210 AT2G14210.1 38.071 197 115 3 1 190 1 197 1.06e-35 127
Msa1300210 AT2G14210.2 38.071 197 115 3 1 190 1 197 1.56e-35 127
Msa1300210 AT3G57390.3 42.541 181 92 4 1 171 1 179 3.12e-35 125
Msa1300210 AT3G57390.1 42.541 181 92 4 1 171 1 179 4.99e-35 126
Msa1300210 AT4G24540.1 38.462 208 125 2 1 206 1 207 5.38e-35 125
Msa1300210 AT1G71692.1 42.328 189 90 3 1 175 1 184 5.72e-35 124
Msa1300210 AT4G37940.3 43.165 139 77 2 1 138 1 138 5.34e-34 121
Msa1300210 AT5G65050.3 39.196 199 114 4 1 198 1 193 8.91e-34 121
Msa1300210 AT5G65060.1 36.458 192 115 2 1 191 1 186 2.92e-33 119
Msa1300210 AT4G37940.4 43.165 139 77 2 1 138 1 138 4.94e-33 119
Msa1300210 AT5G65050.5 37.186 199 107 3 1 198 1 182 6.39e-33 118
Msa1300210 AT5G51870.1 38.418 177 102 3 1 174 1 173 8.33e-33 119
Msa1300210 AT5G65060.3 37.572 173 102 1 1 173 1 167 9.31e-33 118
Msa1300210 AT5G51870.4 35.149 202 119 4 1 194 1 198 1.40e-32 119
Msa1300210 AT5G51870.3 38.286 175 101 3 1 172 11 181 1.61e-32 119
Msa1300210 AT5G65050.2 39.884 173 98 2 1 173 1 167 2.41e-32 117
Msa1300210 AT2G22630.1 37.931 174 102 3 1 171 1 171 2.52e-32 118
Msa1300210 AT2G22630.2 37.931 174 102 3 1 171 1 171 2.52e-32 118
Msa1300210 AT5G62165.14 61.905 84 31 1 1 84 1 83 1.31e-31 112
Msa1300210 AT5G65070.1 40.000 170 96 1 1 170 1 164 1.38e-31 115
Msa1300210 AT2G22540.3 38.596 171 102 2 1 169 1 170 2.26e-31 116
Msa1300210 AT2G22540.1 38.596 171 102 2 1 169 1 170 2.26e-31 116
Msa1300210 AT5G13790.2 41.477 176 92 3 1 172 1 169 4.31e-31 116
Msa1300210 AT5G13790.1 40.698 172 96 2 1 172 1 166 5.60e-31 115
Msa1300210 AT5G65060.2 35.938 192 105 3 1 191 1 175 6.60e-31 113
Msa1300210 AT5G51870.2 39.726 146 84 2 1 143 1 145 1.91e-30 112
Msa1300210 AT5G51870.5 39.865 148 81 3 1 143 24 168 3.54e-30 112
Msa1300210 AT5G51860.2 35.233 193 111 6 1 189 1 183 4.57e-30 111
Msa1300210 AT5G51860.1 37.500 160 94 4 1 156 1 158 1.27e-29 110
Msa1300210 AT5G65050.1 41.718 163 86 4 1 160 1 157 1.91e-29 109
Msa1300210 AT5G65080.3 40.000 155 87 2 1 155 8 156 4.02e-29 108
Msa1300210 AT5G20240.2 42.657 143 78 2 1 142 1 140 2.87e-28 105
Msa1300210 AT5G23260.2 38.150 173 105 2 1 172 1 172 2.89e-28 108
Msa1300210 AT5G20240.1 41.497 147 82 2 1 146 1 144 2.94e-28 107
Msa1300210 AT5G65070.4 41.781 146 79 1 1 146 1 140 3.85e-28 105
Msa1300210 AT5G23260.4 38.150 173 105 2 1 172 17 188 7.21e-28 107
Msa1300210 AT2G22540.2 36.257 171 101 2 1 169 1 165 1.08e-27 106
Msa1300210 AT5G65070.2 34.826 201 94 3 1 170 1 195 7.29e-26 101
Msa1300210 AT5G65070.3 34.158 202 95 3 1 170 1 196 2.60e-25 100
Msa1300210 AT5G23260.1 37.572 173 101 3 1 172 17 183 4.29e-25 100
Msa1300210 AT5G65080.2 38.608 158 82 3 1 154 8 154 5.09e-25 98.6
Msa1300210 AT1G77080.5 37.209 172 102 1 1 172 1 166 1.76e-24 96.3
Msa1300210 AT1G77080.4 36.471 170 102 1 1 170 1 164 5.01e-24 95.9
Msa1300210 AT5G65070.5 35.955 178 77 3 1 147 1 172 5.54e-24 95.9
Msa1300210 AT3G54340.1 35.669 157 83 3 1 149 1 147 1.11e-23 95.9
Msa1300210 AT1G77080.11 36.471 170 102 1 1 170 1 164 1.30e-23 94.4
Msa1300210 AT5G23260.3 38.356 146 88 2 1 145 1 145 1.70e-23 95.5
Msa1300210 AT1G77080.2 37.647 170 96 3 1 170 1 160 3.52e-22 90.9
Msa1300210 AT1G31140.2 37.179 156 80 4 1 145 1 149 9.14e-22 90.5
Msa1300210 AT1G31140.1 37.662 154 80 4 1 145 1 147 1.17e-21 90.1
Msa1300210 AT1G77980.1 38.158 152 82 4 1 141 1 151 5.70e-21 90.5
Msa1300210 AT1G22130.1 54.286 70 32 0 1 70 1 70 1.31e-19 86.7
Msa1300210 AT1G77080.12 37.419 155 87 3 1 155 1 145 2.03e-19 82.4
Msa1300210 AT1G77080.8 31.980 197 101 2 1 170 1 191 2.63e-19 84.0
Msa1300210 AT1G69120.3 39.655 116 68 2 63 176 1 116 3.40e-19 82.8
Msa1300210 AT1G77950.3 51.429 70 34 0 1 70 1 70 1.33e-17 79.7
Msa1300210 AT1G77950.2 51.429 70 34 0 1 70 1 70 1.33e-17 79.7
Msa1300210 AT1G77950.1 51.429 70 34 0 1 70 1 70 1.33e-17 79.7
Msa1300210 AT1G77950.4 51.429 70 34 0 1 70 1 70 1.33e-17 79.7
Msa1300210 AT5G60910.2 31.282 195 104 6 63 249 1 173 8.45e-17 76.3
Msa1300210 AT4G37435.1 32.370 173 107 2 1 169 1 167 4.94e-16 74.3
Msa1300210 AT1G18750.4 43.590 78 43 1 1 77 1 78 9.18e-16 76.3
Msa1300210 AT1G18750.1 43.590 78 43 1 1 77 1 78 1.02e-15 76.3
Msa1300210 AT1G18750.3 43.590 78 43 1 1 77 1 78 1.34e-15 75.9
Msa1300210 AT1G01530.1 54.386 57 26 0 1 57 6 62 5.60e-15 72.8
Msa1300210 AT2G03060.3 44.872 78 42 1 1 77 1 78 3.54e-14 71.6
Msa1300210 AT2G03060.7 44.872 78 42 1 1 77 1 78 3.54e-14 71.6
Msa1300210 AT2G03060.1 44.872 78 42 1 1 77 1 78 3.54e-14 71.6
Msa1300210 AT2G03060.2 44.872 78 42 1 1 77 1 78 4.20e-14 71.6
Msa1300210 AT1G69540.1 28.144 167 93 3 1 164 1 143 7.58e-14 70.5
Msa1300210 AT1G69540.2 27.778 180 99 4 1 173 1 156 9.93e-14 70.5
Msa1300210 AT4G36590.1 46.575 73 35 1 2 74 7 75 2.51e-13 68.2
Msa1300210 AT1G72350.1 38.462 91 52 2 2 92 43 129 3.50e-13 67.4
Msa1300210 AT1G65360.1 47.368 57 30 0 1 57 6 62 7.59e-13 66.2
Msa1300210 AT5G60440.1 50.000 56 28 0 2 57 7 62 3.39e-12 65.5
Msa1300210 AT4G18960.3 29.870 154 99 4 54 205 55 201 5.13e-12 64.3
Msa1300210 AT4G18960.2 29.870 154 99 4 54 205 55 201 5.13e-12 64.3
Msa1300210 AT3G04100.1 45.000 60 33 0 2 61 14 73 5.17e-12 63.5
Msa1300210 AT3G66656.1 45.614 57 31 0 1 57 1 57 6.80e-12 62.8
Msa1300210 AT2G34440.1 43.860 57 32 0 1 57 1 57 8.87e-12 62.4
Msa1300210 AT2G24840.1 28.659 164 96 4 1 144 62 224 9.55e-12 63.9
Msa1300210 AT1G29962.1 50.000 60 30 0 2 61 8 67 1.10e-11 62.4
Msa1300210 AT1G47760.1 51.020 49 24 0 1 49 1 49 1.76e-11 61.6
Msa1300210 AT1G28460.1 48.333 60 31 0 2 61 8 67 7.83e-11 60.1

Find 64 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTCTTTATAATCTTTA+TGG 0.069047 8_3:-61679644 None:intergenic
GATGAGAATGCTTTCTTAAA+TGG 0.191603 8_3:-61673965 None:intergenic
GTGAATTCCAACTTGCAAAT+TGG 0.221680 8_3:+61678992 Msa1300210:CDS
CTTTCAATCTCAAATATTCT+TGG 0.237440 8_3:-61677167 None:intergenic
AATGCTTTAGGAACCTTCTT+GGG 0.275687 8_3:+61677328 Msa1300210:intron
ACCTGGAACTTGTAAGTTAT+CGG 0.301270 8_3:-61678870 None:intergenic
ACAAGTTCCAGGTAGAATAT+TGG 0.334594 8_3:+61678880 Msa1300210:CDS
AACATTTACCAGAGTATCAT+TGG 0.339966 8_3:-61677017 None:intergenic
TGAATTCCAACTTGCAAATT+GGG 0.345860 8_3:+61678993 Msa1300210:CDS
GCAACGTTAATTGTTGGTTC+AGG 0.354685 8_3:-61679744 None:intergenic
CGAGCAACTTGAAAATCATT+TGG 0.359293 8_3:+61677383 Msa1300210:CDS
TTCATAGAGTTTGCCACGGT+TGG 0.385936 8_3:-61674198 None:intergenic
AAATGCTTTAGGAACCTTCT+TGG 0.387253 8_3:+61677327 Msa1300210:intron
TCCAGGTAGAATATTGGCTT+TGG 0.396800 8_3:+61678886 Msa1300210:CDS
AGAATATTGGCTTTGGAAGC+TGG 0.410498 8_3:+61678893 Msa1300210:CDS
AGGAGGAGGAGGAGAAGGAA+AGG 0.416302 8_3:-61678939 None:intergenic
ACCGATAACTTACAAGTTCC+AGG 0.417009 8_3:+61678869 Msa1300210:CDS
GAATATGCAACGTTAATTGT+TGG 0.418239 8_3:-61679750 None:intergenic
AACTCAGTGATCTTCACAAT+CGG 0.428681 8_3:+61677924 Msa1300210:CDS
ACTTTACCCAATTTGCAAGT+TGG 0.437659 8_3:-61678999 None:intergenic
CAAGTACAGTTATAATGAAC+TGG 0.445526 8_3:+61676979 Msa1300210:CDS
CCAGAGTATCATTGGCTGGT+TGG 0.458073 8_3:-61677009 None:intergenic
AGTATCATTGGCTGGTTGGT+TGG 0.465819 8_3:-61677005 None:intergenic
GGAGGAGGAGGAGAAGGAAA+GGG 0.474867 8_3:-61678938 None:intergenic
AACCTATCTGATTGAGGAGG+AGG 0.495232 8_3:-61678953 None:intergenic
GCGTCATCCTTGAGAATGAA+TGG 0.496440 8_3:+61679575 Msa1300210:CDS
GATATTGCACAAATGAATAC+AGG 0.496917 8_3:+61677354 Msa1300210:CDS
TTTACCAGAGTATCATTGGC+TGG 0.506248 8_3:-61677013 None:intergenic
TTAACCAATACAGAAAAGCT+AGG 0.509865 8_3:+61673990 Msa1300210:five_prime_UTR
GTGCAATATCTTCCCCAAGA+AGG 0.512715 8_3:-61677341 None:intergenic
AAATAACGATCTGAGAAGTA+AGG 0.522802 8_3:+61678340 Msa1300210:CDS
GAGAAGGAAAGGGTGCATGA+TGG 0.528427 8_3:-61678928 None:intergenic
GCAACTTGAAAATCATTTGG+AGG 0.531635 8_3:+61677386 Msa1300210:CDS
ACTCAGTGATCTTCACAATC+GGG 0.538618 8_3:+61677925 Msa1300210:CDS
AAGCTAGGGAGTTCTACTCC+AGG 0.539620 8_3:+61674005 Msa1300210:five_prime_UTR
CTATCTGATTGAGGAGGAGG+AGG 0.540160 8_3:-61678950 None:intergenic
TATATGCAGCTACAATCCGA+TGG 0.541973 8_3:+61679529 Msa1300210:intron
ATGAATTCAGTAGCACCTCC+TGG 0.543725 8_3:+61674216 Msa1300210:CDS
CTCCTCCTCCTCAATCAGAT+AGG 0.544066 8_3:+61678951 Msa1300210:CDS
AAGAAATGGTGTACTCAAGA+AGG 0.552744 8_3:+61674124 Msa1300210:CDS
GTTCATTATAACTGTACTTG+TGG 0.559243 8_3:-61676976 None:intergenic
CCAACCAGCCAATGATACTC+TGG 0.559471 8_3:+61677009 Msa1300210:CDS
ATATAGCATGATGAAAACAT+TGG 0.571729 8_3:+61676946 Msa1300210:intron
GTCGAATCCATTCATTCTCA+AGG 0.575307 8_3:-61679582 None:intergenic
ATGCTTTAGGAACCTTCTTG+GGG 0.577563 8_3:+61677329 Msa1300210:intron
TCCAAAGCCAATATTCTACC+TGG 0.581815 8_3:-61678887 None:intergenic
CTTATCATCTTCTCCAACCG+TGG 0.584619 8_3:+61674185 Msa1300210:CDS
ATATGCAGCTACAATCCGAT+GGG 0.586179 8_3:+61679530 Msa1300210:intron
TGGAGAAACCTATCTGATTG+AGG 0.593462 8_3:-61678959 None:intergenic
TAACCAATACAGAAAAGCTA+GGG 0.599889 8_3:+61673991 Msa1300210:five_prime_UTR
AGCTAGGGAGTTCTACTCCA+GGG 0.617312 8_3:+61674006 Msa1300210:five_prime_UTR
TTTACATCAGCAGAACCCAT+CGG 0.640734 8_3:-61679545 None:intergenic
ACTTAAGAATATAAGATCGA+CGG 0.644848 8_3:+61677413 Msa1300210:CDS
ATATTGGCTTTGGAAGCTGG+TGG 0.647036 8_3:+61678896 Msa1300210:CDS
GATAGGTTTCTCCACCATGT+GGG 0.657071 8_3:+61678968 Msa1300210:CDS
AGATAGGTTTCTCCACCATG+TGG 0.660803 8_3:+61678967 Msa1300210:CDS
TGAATTCATAGAGTTTGCCA+CGG 0.664927 8_3:-61674202 None:intergenic
GGTTCTGCTGATGTAAACGT+TGG 0.678229 8_3:+61679551 Msa1300210:CDS
AGTTGGAATTCACTCCCACA+TGG 0.680115 8_3:-61678982 None:intergenic
AAATCTTACAACGTTCACAA+AGG 0.680204 8_3:+61677199 Msa1300210:CDS
TGGAATTCACTCCCACATGG+TGG 0.684600 8_3:-61678979 None:intergenic
AGAAACCTATCTGATTGAGG+AGG 0.689173 8_3:-61678956 None:intergenic
ATGGATTCGACGCTATGACG+TGG 0.697285 8_3:+61679594 Msa1300210:CDS
TAAGAATATAAGATCGACGG+AGG 0.706354 8_3:+61677416 Msa1300210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAATATTTATTAACTTG+AGG - chr8_3:61674509-61674528 None:intergenic 10.0%
!! TATTCATACATATATATATT+TGG - chr8_3:61674692-61674711 None:intergenic 10.0%
!!! TTTTATCTTAGTAAAAAATA+TGG + chr8_3:61676000-61676019 Msa1300210:intron 10.0%
!!! TATAAATTAATTTAGTTTTG+AGG + chr8_3:61676654-61676673 Msa1300210:intron 10.0%
!! AAAGTAATTAAAAAACTAAA+TGG + chr8_3:61677625-61677644 Msa1300210:intron 10.0%
!!! AAAATAGTTATTTCATTTTT+TGG + chr8_3:61677853-61677872 Msa1300210:intron 10.0%
!! AATGTTTACATAAATAAAAA+TGG + chr8_3:61679698-61679717 Msa1300210:three_prime_UTR 10.0%
!!! ATTTATTTTTTCACAAACAA+AGG + chr8_3:61674532-61674551 Msa1300210:intron 15.0%
!!! TTTATTTTTTCACAAACAAA+GGG + chr8_3:61674533-61674552 Msa1300210:intron 15.0%
!! TGTTAAAAACATGTTTAAAT+TGG + chr8_3:61675024-61675043 Msa1300210:intron 15.0%
!! GTTAAAAACATGTTTAAATT+GGG + chr8_3:61675025-61675044 Msa1300210:intron 15.0%
!!! GTAATTTTGTTTTTGAATTT+TGG + chr8_3:61675098-61675117 Msa1300210:intron 15.0%
!!! GCAATTAATGTTTTATTTTT+TGG - chr8_3:61675396-61675415 None:intergenic 15.0%
!! TTTATTGAAGTAATAACTAT+TGG + chr8_3:61675657-61675676 Msa1300210:intron 15.0%
!!! TAAGCAAAAAACAATTTTTT+AGG + chr8_3:61675709-61675728 Msa1300210:intron 15.0%
!! AATGATAACATATAAAATGT+AGG - chr8_3:61675975-61675994 None:intergenic 15.0%
!! TGTTATGAGAATAATATATA+TGG + chr8_3:61676031-61676050 Msa1300210:intron 15.0%
!!! TAAAAATTGAAGTATTAGTT+TGG - chr8_3:61676540-61676559 None:intergenic 15.0%
!!! AATTTTTAAGTAGAAGTTTA+TGG + chr8_3:61676552-61676571 Msa1300210:intron 15.0%
!!! CAAGTTTTTTTTATACAATT+TGG + chr8_3:61677784-61677803 Msa1300210:intron 15.0%
!!! TTAAAAAAATCTTATTTGCT+TGG + chr8_3:61678505-61678524 Msa1300210:intron 15.0%
!!! TCAATTTAAAAGTTTGTTTT+AGG - chr8_3:61678594-61678613 None:intergenic 15.0%
!! AATACATGAATGAAAAATTA+TGG + chr8_3:61678631-61678650 Msa1300210:intron 15.0%
!!! AAACGTTTTTAATGATTTAA+TGG + chr8_3:61679195-61679214 Msa1300210:intron 15.0%
!!! TTTTAATGATTTAATGGTTA+TGG + chr8_3:61679201-61679220 Msa1300210:intron 15.0%
!! CAATTTCTTTATAATCTTTA+TGG - chr8_3:61679647-61679666 None:intergenic 15.0%
!!! TTAAATGGTCTATTTTCTTA+TGG - chr8_3:61673953-61673972 None:intergenic 20.0%
!! ACACATAATTAGATACATAA+AGG - chr8_3:61674264-61674283 None:intergenic 20.0%
!!! ATCTAATTATGTGTTTCTTT+TGG + chr8_3:61674270-61674289 Msa1300210:intron 20.0%
!! TGTCATATTTATTTACCTAT+CGG - chr8_3:61674390-61674409 None:intergenic 20.0%
!! ATCTTAACTATATGTTTGAT+CGG - chr8_3:61674446-61674465 None:intergenic 20.0%
!! AATTGAAAACAACTATTTAC+AGG + chr8_3:61674572-61674591 Msa1300210:intron 20.0%
!! ATATATATTTGGAGACAAAA+TGG - chr8_3:61674681-61674700 None:intergenic 20.0%
!! ATATTTCCAGAATGTAAAAA+AGG + chr8_3:61674966-61674985 Msa1300210:intron 20.0%
!! TATTTCCAGAATGTAAAAAA+GGG + chr8_3:61674967-61674986 Msa1300210:intron 20.0%
!! TATATATCTGATGATTGTTA+GGG - chr8_3:61675077-61675096 None:intergenic 20.0%
!! ATATATATCTGATGATTGTT+AGG - chr8_3:61675078-61675097 None:intergenic 20.0%
!! TTCCATATTTGATTCATTAA+GGG - chr8_3:61675478-61675497 None:intergenic 20.0%
!! TTTCCATATTTGATTCATTA+AGG - chr8_3:61675479-61675498 None:intergenic 20.0%
!! TAATGAATCAAATATGGAAA+TGG + chr8_3:61675479-61675498 Msa1300210:intron 20.0%
!!! TTTTTACTTATAAATGTGAC+CGG + chr8_3:61675811-61675830 Msa1300210:intron 20.0%
!!! ATTTTATTAAATACTCCATC+CGG - chr8_3:61675833-61675852 None:intergenic 20.0%
!!! TATTTTTTTTCTCTCTTTCA+AGG - chr8_3:61676200-61676219 None:intergenic 20.0%
!! TACAAAAATATATAACCTTG+AGG - chr8_3:61676385-61676404 None:intergenic 20.0%
!! ATAAAAGAGGAAAATAATCA+TGG - chr8_3:61676436-61676455 None:intergenic 20.0%
!!! ATGATTATTTTCCTCTTTTA+TGG + chr8_3:61676435-61676454 Msa1300210:intron 20.0%
!!! TTTTTATAAGCAAAACATAG+GGG - chr8_3:61676796-61676815 None:intergenic 20.0%
!!! GTTTTTATAAGCAAAACATA+GGG - chr8_3:61676797-61676816 None:intergenic 20.0%
!!! TGTTTTTATAAGCAAAACAT+AGG - chr8_3:61676798-61676817 None:intergenic 20.0%
!!! TCAATGATATTGATTTCTAA+GGG - chr8_3:61676902-61676921 None:intergenic 20.0%
!!! ATCAATGATATTGATTTCTA+AGG - chr8_3:61676903-61676922 None:intergenic 20.0%
!! TAAGTAATAACTAATTTGAG+TGG + chr8_3:61677292-61677311 Msa1300210:intron 20.0%
!! ATGTATGTTAAAATATGTGT+TGG - chr8_3:61677982-61678001 None:intergenic 20.0%
!! AGTAAAAAGAAGAAGAATAT+TGG - chr8_3:61678149-61678168 None:intergenic 20.0%
!!! TATGTTTTCCATTGAAATTT+AGG + chr8_3:61678394-61678413 Msa1300210:intron 20.0%
!!! TGTCACTTTTTAATACTATT+TGG + chr8_3:61678688-61678707 Msa1300210:intron 20.0%
!! TTAAATAATGTCATACTGAT+AGG - chr8_3:61678744-61678763 None:intergenic 20.0%
!!! ACATTATTTAAGACTATGTT+TGG + chr8_3:61678753-61678772 Msa1300210:intron 20.0%
!!! CATTATTTAAGACTATGTTT+GGG + chr8_3:61678754-61678773 Msa1300210:intron 20.0%
!!! TTTTTACCAAATACAGTATA+AGG + chr8_3:61679051-61679070 Msa1300210:intron 20.0%
!! ATAAAACCTTATACTGTATT+TGG - chr8_3:61679060-61679079 None:intergenic 20.0%
! AGAGAGAACAAAACAAAAAT+GGG + chr8_3:61674035-61674054 Msa1300210:exon 25.0%
!! AATTATGTGTTTCTTTTGGT+TGG + chr8_3:61674274-61674293 Msa1300210:intron 25.0%
! TCTTAACTATATGTTTGATC+GGG - chr8_3:61674445-61674464 None:intergenic 25.0%
! CTTTACACTTTAAACAAATC+TGG - chr8_3:61674730-61674749 None:intergenic 25.0%
!!! TTTTACCCTTTTTTACATTC+TGG - chr8_3:61674975-61674994 None:intergenic 25.0%
! TTGTATTGTATTATGTACGT+AGG - chr8_3:61675124-61675143 None:intergenic 25.0%
!! ATATAGAGTATTAACAGACT+AGG + chr8_3:61675158-61675177 Msa1300210:intron 25.0%
! TATCCTTAGTTAAAACTGTA+GGG + chr8_3:61675342-61675361 Msa1300210:intron 25.0%
! AGAAACATGTTATAGAAGAA+GGG + chr8_3:61675437-61675456 Msa1300210:intron 25.0%
! TTCCCTTAATGAATCAAATA+TGG + chr8_3:61675473-61675492 Msa1300210:intron 25.0%
! CAAATATGGAAATGGTTTAT+TGG + chr8_3:61675487-61675506 Msa1300210:intron 25.0%
!! AAACAATCGTTTTCTATAAC+GGG - chr8_3:61675631-61675650 None:intergenic 25.0%
!! CAAACAATCGTTTTCTATAA+CGG - chr8_3:61675632-61675651 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr8_3:61675699-61675718 None:intergenic 25.0%
! ATGTATCTGGTCATAATTAT+AGG - chr8_3:61675760-61675779 None:intergenic 25.0%
! CATTCAATAACTAATGTATC+TGG - chr8_3:61675773-61675792 None:intergenic 25.0%
! AATAATCGACTAAATCACTT+CGG - chr8_3:61675861-61675880 None:intergenic 25.0%
! TCAAACTATATCACGTAATA+TGG + chr8_3:61676054-61676073 Msa1300210:intron 25.0%
! CAAACTATATCACGTAATAT+GGG + chr8_3:61676055-61676074 Msa1300210:intron 25.0%
!!! ATAATAAGTTGATGATGTGA+CGG + chr8_3:61676226-61676245 Msa1300210:intron 25.0%
! ATAAGCGAAAAACTTTATTG+AGG + chr8_3:61676332-61676351 Msa1300210:intron 25.0%
!!! ATCATGGTTTTATATTGTGT+GGG - chr8_3:61676420-61676439 None:intergenic 25.0%
!!! AATCATGGTTTTATATTGTG+TGG - chr8_3:61676421-61676440 None:intergenic 25.0%
!! ATTATTTTCCTCTTTTATGG+AGG + chr8_3:61676438-61676457 Msa1300210:intron 25.0%
! TTACACAACTGAAATGATTA+GGG - chr8_3:61676731-61676750 None:intergenic 25.0%
! ATTACACAACTGAAATGATT+AGG - chr8_3:61676732-61676751 None:intergenic 25.0%
! AACATGTAAATAGAAGTTCA+TGG - chr8_3:61676766-61676785 None:intergenic 25.0%
! ATGAACTTCTATTTACATGT+TGG + chr8_3:61676765-61676784 Msa1300210:intron 25.0%
!! TTTTATAAGCAAAACATAGG+GGG - chr8_3:61676795-61676814 None:intergenic 25.0%
! ATATAGCATGATGAAAACAT+TGG + chr8_3:61676946-61676965 Msa1300210:intron 25.0%
! CTTTCAATCTCAAATATTCT+TGG - chr8_3:61677170-61677189 None:intergenic 25.0%
!! ATTCAAGTGCAATTTTCATT+GGG - chr8_3:61677239-61677258 None:intergenic 25.0%
!! AATTCAAGTGCAATTTTCAT+TGG - chr8_3:61677240-61677259 None:intergenic 25.0%
! GAAATGTTTGTAAATGCTTT+AGG + chr8_3:61677316-61677335 Msa1300210:intron 25.0%
! ACTTAAGAATATAAGATCGA+CGG + chr8_3:61677413-61677432 Msa1300210:CDS 25.0%
! TTGCAATCATATTGTATGTA+TGG - chr8_3:61677762-61677781 None:intergenic 25.0%
!! CTCTTTTTACAAATGCTTTT+AGG + chr8_3:61677823-61677842 Msa1300210:intron 25.0%
!!! AAAGGTGTTGTTTAAACATT+TGG - chr8_3:61678239-61678258 None:intergenic 25.0%
! GAAAACATATGATCTGTATT+TGG - chr8_3:61678383-61678402 None:intergenic 25.0%
! AACTTGTACCTAAATTTCAA+TGG - chr8_3:61678405-61678424 None:intergenic 25.0%
! ATTGAAATTTAGGTACAAGT+TGG + chr8_3:61678404-61678423 Msa1300210:intron 25.0%
!!! TTGGATTAGTATTCTTACTT+TGG + chr8_3:61678524-61678543 Msa1300210:intron 25.0%
!!! GTTTTAGGTCTATAAACATA+TGG - chr8_3:61678579-61678598 None:intergenic 25.0%
! GTAAGATGAATTCAATACTA+AGG + chr8_3:61678653-61678672 Msa1300210:intron 25.0%
!!! CTTTTCATGTTTTTTTTGTC+AGG + chr8_3:61679343-61679362 Msa1300210:intron 25.0%
!! ACCTTCTTTTCATGTTAATA+TGG + chr8_3:61679481-61679500 Msa1300210:intron 25.0%
GATGAGAATGCTTTCTTAAA+TGG - chr8_3:61673968-61673987 None:intergenic 30.0%
TTAACCAATACAGAAAAGCT+AGG + chr8_3:61673990-61674009 Msa1300210:five_prime_UTR 30.0%
TAACCAATACAGAAAAGCTA+GGG + chr8_3:61673991-61674010 Msa1300210:five_prime_UTR 30.0%
GAGAGAGAACAAAACAAAAA+TGG + chr8_3:61674034-61674053 Msa1300210:exon 30.0%
AACAAAACAAAAATGGGAAG+AGG + chr8_3:61674041-61674060 Msa1300210:exon 30.0%
ACAAAACAAAAATGGGAAGA+GGG + chr8_3:61674042-61674061 Msa1300210:exon 30.0%
! ACTTTTGCTAAGAGAAGAAA+TGG + chr8_3:61674110-61674129 Msa1300210:CDS 30.0%
!! TTTCTTTTGGTTGGAATATG+TGG + chr8_3:61674283-61674302 Msa1300210:intron 30.0%
TTAACAACATATGCAAGCTT+TGG + chr8_3:61674645-61674664 Msa1300210:intron 30.0%
AAAAAATCCACTTTGACAAG+AGG - chr8_3:61674866-61674885 None:intergenic 30.0%
!!! TGCTGCTTTTATTTCAAGAT+AGG + chr8_3:61674923-61674942 Msa1300210:intron 30.0%
TTCAAGATAGGTTCTTAACT+AGG + chr8_3:61674935-61674954 Msa1300210:intron 30.0%
TCAAGATAGGTTCTTAACTA+GGG + chr8_3:61674936-61674955 Msa1300210:intron 30.0%
TTTGCATTGCAATTTAAGGA+TGG + chr8_3:61675251-61675270 Msa1300210:intron 30.0%
!! GATGTTGATTTACACTTTAC+AGG - chr8_3:61675322-61675341 None:intergenic 30.0%
CTATCCTTAGTTAAAACTGT+AGG + chr8_3:61675341-61675360 Msa1300210:intron 30.0%
ATCCTTAGTTAAAACTGTAG+GGG + chr8_3:61675343-61675362 Msa1300210:intron 30.0%
CAGAAACATGTTATAGAAGA+AGG + chr8_3:61675436-61675455 Msa1300210:intron 30.0%
!!! TTTTTTAACATGTGCCCTAA+GGG + chr8_3:61675590-61675609 Msa1300210:intron 30.0%
! ACTTTATTGAGGAGTATAAG+AGG + chr8_3:61676343-61676362 Msa1300210:intron 30.0%
! GGTCTCATCAAAATTTTGAA+TGG - chr8_3:61676519-61676538 None:intergenic 30.0%
!!! TAGTTTTGAGGCACTAATAT+TGG + chr8_3:61676666-61676685 Msa1300210:intron 30.0%
TACACAACTGAAATGATTAG+GGG - chr8_3:61676730-61676749 None:intergenic 30.0%
! AAAGTGTCTAATGTGTTCTA+GGG - chr8_3:61676856-61676875 None:intergenic 30.0%
!! AAAAGTGTCTAATGTGTTCT+AGG - chr8_3:61676857-61676876 None:intergenic 30.0%
! ATTTCTAAGGGAAACAAGAT+GGG - chr8_3:61676890-61676909 None:intergenic 30.0%
TCATCATGCTATATGATACA+AGG - chr8_3:61676940-61676959 None:intergenic 30.0%
GTTCATTATAACTGTACTTG+TGG - chr8_3:61676979-61676998 None:intergenic 30.0%
CAAGTACAGTTATAATGAAC+TGG + chr8_3:61676979-61676998 Msa1300210:CDS 30.0%
! AACATTTACCAGAGTATCAT+TGG - chr8_3:61677020-61677039 None:intergenic 30.0%
AAATCTTACAACGTTCACAA+AGG + chr8_3:61677199-61677218 Msa1300210:CDS 30.0%
GATATTGCACAAATGAATAC+AGG + chr8_3:61677354-61677373 Msa1300210:CDS 30.0%
TTCAATACACGCTCTTTAAT+CGG + chr8_3:61678004-61678023 Msa1300210:intron 30.0%
!! GAGACTCACATAATTTTGAT+GGG - chr8_3:61678048-61678067 None:intergenic 30.0%
! TGAGACTCACATAATTTTGA+TGG - chr8_3:61678049-61678068 None:intergenic 30.0%
!! CATTGATTTGGTATAAGTCA+AGG - chr8_3:61678297-61678316 None:intergenic 30.0%
AAATAACGATCTGAGAAGTA+AGG + chr8_3:61678340-61678359 Msa1300210:CDS 30.0%
!!! GTACAAGTTGGTTTTTCTTA+TGG + chr8_3:61678416-61678435 Msa1300210:intron 30.0%
!! GGTTTTTCTTATGGTAATGT+AGG + chr8_3:61678425-61678444 Msa1300210:intron 30.0%
TAGTATTCTTACTTTGGACA+TGG + chr8_3:61678530-61678549 Msa1300210:intron 30.0%
TAGGTCTATAAACATATGGT+GGG - chr8_3:61678575-61678594 None:intergenic 30.0%
TTAGGTCTATAAACATATGG+TGG - chr8_3:61678576-61678595 None:intergenic 30.0%
TGAATTCCAACTTGCAAATT+GGG + chr8_3:61678993-61679012 Msa1300210:CDS 30.0%
ACCTTATAAGATGAACAAGT+GGG + chr8_3:61679386-61679405 Msa1300210:intron 30.0%
ATTAACATGAAAAGAAGGTC+CGG - chr8_3:61679480-61679499 None:intergenic 30.0%
GCCATATTAACATGAAAAGA+AGG - chr8_3:61679485-61679504 None:intergenic 30.0%
GAATATGCAACGTTAATTGT+TGG - chr8_3:61679753-61679772 None:intergenic 30.0%
AAGAAATGGTGTACTCAAGA+AGG + chr8_3:61674124-61674143 Msa1300210:CDS 35.0%
TGAATTCATAGAGTTTGCCA+CGG - chr8_3:61674205-61674224 None:intergenic 35.0%
GATATAAGAGAAGAGTTACC+AGG - chr8_3:61674237-61674256 None:intergenic 35.0%
TTAATTGTGTCCTCTTTCTC+AGG - chr8_3:61674355-61674374 None:intergenic 35.0%
!!! TAATTTTGAGTTCAGCCGAT+AGG + chr8_3:61674372-61674391 Msa1300210:intron 35.0%
AACTATATGTTTGATCGGGA+CGG - chr8_3:61674441-61674460 None:intergenic 35.0%
TCAGATCTTCACAATGTCAT+GGG - chr8_3:61674839-61674858 None:intergenic 35.0%
TTCAGATCTTCACAATGTCA+TGG - chr8_3:61674840-61674859 None:intergenic 35.0%
TAGGAGTTACTGTTGTGATT+TGG + chr8_3:61675182-61675201 Msa1300210:intron 35.0%
TGCAAACGCAAAGTAAAAAC+AGG - chr8_3:61675237-61675256 None:intergenic 35.0%
TGCGTTTGCATTGCAATTTA+AGG + chr8_3:61675247-61675266 Msa1300210:intron 35.0%
!! CCATTTTTCTCTTTCTCTCT+TGG - chr8_3:61675279-61675298 None:intergenic 35.0%
CCAAGAGAGAAAGAGAAAAA+TGG + chr8_3:61675276-61675295 Msa1300210:intron 35.0%
!!! TTCCCCTACAGTTTTAACTA+AGG - chr8_3:61675348-61675367 None:intergenic 35.0%
!!! GTTTTTTAACATGTGCCCTA+AGG + chr8_3:61675589-61675608 Msa1300210:intron 35.0%
TACTTATAAATGTGACCGGA+TGG + chr8_3:61675815-61675834 Msa1300210:intron 35.0%
TCAAGGTGTATACACTTACA+AGG - chr8_3:61676183-61676202 None:intergenic 35.0%
! GATTTCTAAGGGAAACAAGA+TGG - chr8_3:61676891-61676910 None:intergenic 35.0%
TGATGTAATAATGTGTCACC+TGG + chr8_3:61677136-61677155 Msa1300210:intron 35.0%
! ATATTCTTGGTAATTCTGCC+AGG - chr8_3:61677157-61677176 None:intergenic 35.0%
CTGCTTACTTTGATCTGTTA+AGG + chr8_3:61677260-61677279 Msa1300210:intron 35.0%
!! AAATGCTTTAGGAACCTTCT+TGG + chr8_3:61677327-61677346 Msa1300210:intron 35.0%
!! AATGCTTTAGGAACCTTCTT+GGG + chr8_3:61677328-61677347 Msa1300210:intron 35.0%
CGAGCAACTTGAAAATCATT+TGG + chr8_3:61677383-61677402 Msa1300210:CDS 35.0%
GCAACTTGAAAATCATTTGG+AGG + chr8_3:61677386-61677405 Msa1300210:CDS 35.0%
TAAGAATATAAGATCGACGG+AGG + chr8_3:61677416-61677435 Msa1300210:CDS 35.0%
AACTCAGTGATCTTCACAAT+CGG + chr8_3:61677924-61677943 Msa1300210:CDS 35.0%
TCAATACACGCTCTTTAATC+GGG + chr8_3:61678005-61678024 Msa1300210:intron 35.0%
GACTTATACCAAATCAATGC+AGG + chr8_3:61678298-61678317 Msa1300210:intron 35.0%
TACCAAATCAATGCAGGAAA+CGG + chr8_3:61678304-61678323 Msa1300210:intron 35.0%
ACCTGGAACTTGTAAGTTAT+CGG - chr8_3:61678873-61678892 None:intergenic 35.0%
ACAAGTTCCAGGTAGAATAT+TGG + chr8_3:61678880-61678899 Msa1300210:CDS 35.0%
GTGAATTCCAACTTGCAAAT+TGG + chr8_3:61678992-61679011 Msa1300210:CDS 35.0%
ACTTTACCCAATTTGCAAGT+TGG - chr8_3:61679002-61679021 None:intergenic 35.0%
CACCTTATAAGATGAACAAG+TGG + chr8_3:61679385-61679404 Msa1300210:intron 35.0%
TCCCACTTGTTCATCTTATA+AGG - chr8_3:61679390-61679409 None:intergenic 35.0%
ACAATGCGTTATTATATGCG+GGG - chr8_3:61679435-61679454 None:intergenic 35.0%
GACAATGCGTTATTATATGC+GGG - chr8_3:61679436-61679455 None:intergenic 35.0%
GGACAATGCGTTATTATATG+CGG - chr8_3:61679437-61679456 None:intergenic 35.0%
!! ACTCCCTAGCTTTTCTGTAT+TGG - chr8_3:61673997-61674016 None:intergenic 40.0%
ATAAGAGAAGAGTTACCAGG+AGG - chr8_3:61674234-61674253 None:intergenic 40.0%
TGAAACTCCTCTTGTCAAAG+TGG + chr8_3:61674856-61674875 Msa1300210:intron 40.0%
! TGATTGTTAGGGCTTGTTCA+TGG - chr8_3:61675066-61675085 None:intergenic 40.0%
GAGTATTAACAGACTAGGCT+AGG + chr8_3:61675163-61675182 Msa1300210:intron 40.0%
!! TTGTGATTTGGTGTCAGAGA+TGG + chr8_3:61675194-61675213 Msa1300210:intron 40.0%
!! TGTGATTTGGTGTCAGAGAT+GGG + chr8_3:61675195-61675214 Msa1300210:intron 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG - chr8_3:61675607-61675626 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG - chr8_3:61675608-61675627 None:intergenic 40.0%
TGGTTAATAACTACTCCCTC+CGG + chr8_3:61675677-61675696 Msa1300210:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr8_3:61675695-61675714 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr8_3:61675696-61675715 None:intergenic 40.0%
! TGCGTACTCGATTTGCAAAA+AGG + chr8_3:61676132-61676151 Msa1300210:intron 40.0%
!! GGAGTATAAGAGGTTCTGAA+CGG + chr8_3:61676353-61676372 Msa1300210:intron 40.0%
ACTTCTCACCTCCATAAAAG+AGG - chr8_3:61676449-61676468 None:intergenic 40.0%
AGGGGTGATTCAATTTGTGT+AGG - chr8_3:61676712-61676731 None:intergenic 40.0%
! TTTACCAGAGTATCATTGGC+TGG - chr8_3:61677016-61677035 None:intergenic 40.0%
!! ATGCTTTAGGAACCTTCTTG+GGG + chr8_3:61677329-61677348 Msa1300210:intron 40.0%
ACTCAGTGATCTTCACAATC+GGG + chr8_3:61677925-61677944 Msa1300210:CDS 40.0%
AATCGGGTTAAAATCCACGT+TGG + chr8_3:61678021-61678040 Msa1300210:intron 40.0%
!! TAATTTTGATGGGACCAACG+TGG - chr8_3:61678038-61678057 None:intergenic 40.0%
TTTAAACATTTGGCTGCGAC+TGG - chr8_3:61678229-61678248 None:intergenic 40.0%
CATGGACTCTCACTCTTAAA+TGG + chr8_3:61678548-61678567 Msa1300210:intron 40.0%
ACCGATAACTTACAAGTTCC+AGG + chr8_3:61678869-61678888 Msa1300210:CDS 40.0%
!! TCCAGGTAGAATATTGGCTT+TGG + chr8_3:61678886-61678905 Msa1300210:CDS 40.0%
TCCAAAGCCAATATTCTACC+TGG - chr8_3:61678890-61678909 None:intergenic 40.0%
!! AGAATATTGGCTTTGGAAGC+TGG + chr8_3:61678893-61678912 Msa1300210:CDS 40.0%
AGAAACCTATCTGATTGAGG+AGG - chr8_3:61678959-61678978 None:intergenic 40.0%
TGGAGAAACCTATCTGATTG+AGG - chr8_3:61678962-61678981 None:intergenic 40.0%
! CAAGTCTTATCCCACTAAGT+GGG + chr8_3:61679254-61679273 Msa1300210:intron 40.0%
! AAGTCTTATCCCACTAAGTG+GGG + chr8_3:61679255-61679274 Msa1300210:intron 40.0%
!!! TTTTTTGTCAGGTAGCCTAG+TGG + chr8_3:61679354-61679373 Msa1300210:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG - chr8_3:61679372-61679391 None:intergenic 40.0%
CAATGCGTTATTATATGCGG+GGG - chr8_3:61679434-61679453 None:intergenic 40.0%
TATATGCAGCTACAATCCGA+TGG + chr8_3:61679529-61679548 Msa1300210:intron 40.0%
ATATGCAGCTACAATCCGAT+GGG + chr8_3:61679530-61679549 Msa1300210:intron 40.0%
TTTACATCAGCAGAACCCAT+CGG - chr8_3:61679548-61679567 None:intergenic 40.0%
GTCGAATCCATTCATTCTCA+AGG - chr8_3:61679585-61679604 None:intergenic 40.0%
!! GCAACGTTAATTGTTGGTTC+AGG - chr8_3:61679747-61679766 None:intergenic 40.0%
CTTATCATCTTCTCCAACCG+TGG + chr8_3:61674185-61674204 Msa1300210:CDS 45.0%
TTCATAGAGTTTGCCACGGT+TGG - chr8_3:61674201-61674220 None:intergenic 45.0%
ATGAATTCAGTAGCACCTCC+TGG + chr8_3:61674216-61674235 Msa1300210:CDS 45.0%
TCCTCTTTCTCAGGAACTAG+AGG - chr8_3:61674346-61674365 None:intergenic 45.0%
ACTGCTGAGAACTCATGTCT+AGG - chr8_3:61674626-61674645 None:intergenic 45.0%
ACGCATTCATGCAACTTCGT+TGG - chr8_3:61676117-61676136 None:intergenic 45.0%
!! TAAGAGGTTCTGAACGGAGA+AGG + chr8_3:61676359-61676378 Msa1300210:intron 45.0%
! GAAACAAGATGGGTTCTGCA+TGG - chr8_3:61676880-61676899 None:intergenic 45.0%
! AGTATCATTGGCTGGTTGGT+TGG - chr8_3:61677008-61677027 None:intergenic 45.0%
GTGCAATATCTTCCCCAAGA+AGG - chr8_3:61677344-61677363 None:intergenic 45.0%
!! CACCGTTTCCTGCATTGATT+TGG - chr8_3:61678309-61678328 None:intergenic 45.0%
!! ATATTGGCTTTGGAAGCTGG+TGG + chr8_3:61678896-61678915 Msa1300210:CDS 45.0%
AACCTATCTGATTGAGGAGG+AGG - chr8_3:61678956-61678975 None:intergenic 45.0%
AGATAGGTTTCTCCACCATG+TGG + chr8_3:61678967-61678986 Msa1300210:CDS 45.0%
GATAGGTTTCTCCACCATGT+GGG + chr8_3:61678968-61678987 Msa1300210:CDS 45.0%
AGTTGGAATTCACTCCCACA+TGG - chr8_3:61678985-61679004 None:intergenic 45.0%
CCACTTAGTGGGATAAGACT+TGG - chr8_3:61679256-61679275 None:intergenic 45.0%
! CCAAGTCTTATCCCACTAAG+TGG + chr8_3:61679253-61679272 Msa1300210:intron 45.0%
AGATGAACAAGTGGGATGTC+CGG + chr8_3:61679394-61679413 Msa1300210:intron 45.0%
GTGAGCATAACTCAGTTGGT+AGG - chr8_3:61679458-61679477 None:intergenic 45.0%
ACCAACTGAGTTATGCTCAC+CGG + chr8_3:61679458-61679477 Msa1300210:intron 45.0%
GGTTCTGCTGATGTAAACGT+TGG + chr8_3:61679551-61679570 Msa1300210:CDS 45.0%
GCGTCATCCTTGAGAATGAA+TGG + chr8_3:61679575-61679594 Msa1300210:CDS 45.0%
!! AAAAAGAAAAAAAAAAAAAA+AGG - chr8_3:61678257-61678276 None:intergenic 5.0%
AAGCTAGGGAGTTCTACTCC+AGG + chr8_3:61674005-61674024 Msa1300210:five_prime_UTR 50.0%
AGCTAGGGAGTTCTACTCCA+GGG + chr8_3:61674006-61674025 Msa1300210:five_prime_UTR 50.0%
TTGTTCTCTCTCTCTCTCCC+TGG - chr8_3:61674026-61674045 None:intergenic 50.0%
! GCCTCTAGTTCCTGAGAAAG+AGG + chr8_3:61674342-61674361 Msa1300210:intron 50.0%
! CCAGAGTATCATTGGCTGGT+TGG - chr8_3:61677012-61677031 None:intergenic 50.0%
CCAACCAGCCAATGATACTC+TGG + chr8_3:61677009-61677028 Msa1300210:CDS 50.0%
GGTTAACGATATCCTGGTCG+TGG - chr8_3:61678208-61678227 None:intergenic 50.0%
! GCGACTGGTTAACGATATCC+TGG - chr8_3:61678214-61678233 None:intergenic 50.0%
CTATCTGATTGAGGAGGAGG+AGG - chr8_3:61678953-61678972 None:intergenic 50.0%
CTCCTCCTCCTCAATCAGAT+AGG + chr8_3:61678951-61678970 Msa1300210:CDS 50.0%
TGGAATTCACTCCCACATGG+TGG - chr8_3:61678982-61679001 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr8_3:61679259-61679278 Msa1300210:intron 50.0%
GATGAACAAGTGGGATGTCC+GGG + chr8_3:61679395-61679414 Msa1300210:intron 50.0%
ATGAACAAGTGGGATGTCCG+GGG + chr8_3:61679396-61679415 Msa1300210:intron 50.0%
GTTATTATATGCGGGGGCTG+GGG - chr8_3:61679428-61679447 None:intergenic 50.0%
CGTTATTATATGCGGGGGCT+GGG - chr8_3:61679429-61679448 None:intergenic 50.0%
TCCGGTGAGCATAACTCAGT+TGG - chr8_3:61679462-61679481 None:intergenic 50.0%
ATGGATTCGACGCTATGACG+TGG + chr8_3:61679594-61679613 Msa1300210:CDS 50.0%
TCTGAACGGAGAAGGCCTCA+AGG + chr8_3:61676367-61676386 Msa1300210:intron 55.0%
CGACTATGTAGACCACGACC+AGG + chr8_3:61678193-61678212 Msa1300210:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr8_3:61679267-61679286 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr8_3:61679268-61679287 None:intergenic 55.0%
GCGTTATTATATGCGGGGGC+TGG - chr8_3:61679430-61679449 None:intergenic 55.0%
GGGGGCTGGGGTTCGAACCC+CGG - chr8_3:61679416-61679435 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 61673949 61679783 61673949 ID=Msa1300210;Name=Msa1300210
chr8_3 mRNA 61673949 61679783 61673949 ID=Msa1300210-mRNA-1;Parent=Msa1300210;Name=Msa1300210-mRNA-1;_AED=0.24;_eAED=0.24;_QI=104|1|1|1|1|1|8|158|249
chr8_3 exon 61673949 61674237 61673949 ID=Msa1300210-mRNA-1:exon:18191;Parent=Msa1300210-mRNA-1
chr8_3 exon 61676952 61677030 61676952 ID=Msa1300210-mRNA-1:exon:18192;Parent=Msa1300210-mRNA-1
chr8_3 exon 61677162 61677220 61677162 ID=Msa1300210-mRNA-1:exon:18193;Parent=Msa1300210-mRNA-1
chr8_3 exon 61677338 61677437 61677338 ID=Msa1300210-mRNA-1:exon:18194;Parent=Msa1300210-mRNA-1
chr8_3 exon 61677905 61677946 61677905 ID=Msa1300210-mRNA-1:exon:18195;Parent=Msa1300210-mRNA-1
chr8_3 exon 61678320 61678361 61678320 ID=Msa1300210-mRNA-1:exon:18196;Parent=Msa1300210-mRNA-1
chr8_3 exon 61678860 61679014 61678860 ID=Msa1300210-mRNA-1:exon:18197;Parent=Msa1300210-mRNA-1
chr8_3 exon 61679538 61679783 61679538 ID=Msa1300210-mRNA-1:exon:18198;Parent=Msa1300210-mRNA-1
chr8_3 five_prime_UTR 61673949 61674052 61673949 ID=Msa1300210-mRNA-1:five_prime_utr;Parent=Msa1300210-mRNA-1
chr8_3 CDS 61674053 61674237 61674053 ID=Msa1300210-mRNA-1:cds;Parent=Msa1300210-mRNA-1
chr8_3 CDS 61676952 61677030 61676952 ID=Msa1300210-mRNA-1:cds;Parent=Msa1300210-mRNA-1
chr8_3 CDS 61677162 61677220 61677162 ID=Msa1300210-mRNA-1:cds;Parent=Msa1300210-mRNA-1
chr8_3 CDS 61677338 61677437 61677338 ID=Msa1300210-mRNA-1:cds;Parent=Msa1300210-mRNA-1
chr8_3 CDS 61677905 61677946 61677905 ID=Msa1300210-mRNA-1:cds;Parent=Msa1300210-mRNA-1
chr8_3 CDS 61678320 61678361 61678320 ID=Msa1300210-mRNA-1:cds;Parent=Msa1300210-mRNA-1
chr8_3 CDS 61678860 61679014 61678860 ID=Msa1300210-mRNA-1:cds;Parent=Msa1300210-mRNA-1
chr8_3 CDS 61679538 61679625 61679538 ID=Msa1300210-mRNA-1:cds;Parent=Msa1300210-mRNA-1
chr8_3 three_prime_UTR 61679626 61679783 61679626 ID=Msa1300210-mRNA-1:three_prime_utr;Parent=Msa1300210-mRNA-1
Gene Sequence

>Msa1300210

ATGGGAAGAGGGAGAGTTGAACTAAAGAGAATAGAGAACAAAATTAATAGACAAGTCACTTTTGCTAAGAGAAGAAATGGTGTACTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAACCGTGGCAAACTCTATGAATTCAGTAGCACCTCCTGCATGATGAAAACATTGGAGAAATACCACAAGTACAGTTATAATGAACTGGAGACCAACCAACCAGCCAATGATACTCTGAATTACCAAGAATATTTGAGATTGAAAGCACATGTAGAAATCTTACAACGTTCACAAAGGAACCTTCTTGGGGAAGATATTGCACAAATGAATACAGGTGAGCTCGAGCAACTTGAAAATCATTTGGAGGCAGCACTTAAGAATATAAGATCGACGGAGACTCAATTCATGCTTGATCAACTCAGTGATCTTCACAATCGGGAAACGGTGCTTGTTGAAACAAATAACGATCTGAGAAGTAAGTTAGAAGAAACCGATAACTTACAAGTTCCAGGTAGAATATTGGCTTTGGAAGCTGGTGGATCTAATTTCCATCATGCACCCTTTCCTTCTCCTCCTCCTCCTCAATCAGATAGGTTTCTCCACCATGTGGGAGTGAATTCCAACTTGCAAATTGGCTACAATCCGATGGGTTCTGCTGATGTAAACGTTGGAGCGTCATCCTTGAGAATGAATGGATTCGACGCTATGACGTGGATGCTCTAA
Protein sequence

>Msa1300210

MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYSYNELETNQPANDTLNYQEYLRLKAHVEILQRSQRNLLGEDIAQMNTGELEQLENHLEAALKNIRSTETQFMLDQLSDLHNRETVLVETNNDLRSKLEETDNLQVPGRILALEAGGSNFHHAPFPSPPPPQSDRFLHHVGVNSNLQIGYNPMGSADVNVGASSLRMNGFDAMTWML*