AlfalfaGEDB | Msa0305810

M. sativa cultivar zhongmu-4 / Msa0305810

KEGG: K02960
GO: GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008047 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0030234 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046863 GO:0050790 GO:0065007 GO:0065009 GO:0098772
PFAM: PF00004.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0305810	XP_013465635.1	96.200	421	11	3	1	419	1	418	0.0	822

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0305810	sp\|Q9ZT00\|RCA_MAIZE	43.614	415	214	11	7	414	12	413	2.19e-110	334

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0305810	A0A072VDJ3	96.200	421	11	3	1	419	1	418	0.0	822

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0305810	0.846575	1.993174e-59	-8.615850e-47
Msa0000220	Msa0305810	0.921106	5.470761e-88	-8.615850e-47
Msa0001040	Msa0305810	0.844242	8.534588e-59	-8.615850e-47
Msa0001420	Msa0305810	0.816132	6.472385e-52	-8.615850e-47
Msa0001510	Msa0305810	0.887991	8.766333e-73	-8.615850e-47
Msa0001540	Msa0305810	0.874954	4.508070e-68	-8.615850e-47
Msa0002060	Msa0305810	0.840605	7.864203e-58	-8.615850e-47
Msa0002690	Msa0305810	0.880552	4.998468e-70	-8.615850e-47
Msa0002700	Msa0305810	0.880420	5.571173e-70	-8.615850e-47
Msa0003340	Msa0305810	0.809888	1.514487e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0305810	MtrunA17_Chr2g0334101	96.200	421	11	3	1	419	1	418	0.0	822
Msa0305810	MtrunA17_Chr3g0112121	49.422	346	161	9	76	415	82	419	8.84e-110	330
Msa0305810	MtrunA17_Chr4g0009431	54.110	292	127	6	124	414	134	419	1.04e-109	331
Msa0305810	MtrunA17_Chr5g0435631	48.555	346	164	9	76	415	82	419	1.56e-107	325

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0305810	AT1G73110.1	77.225	382	87	0	38	419	51	432	0.0	634
Msa0305810	AT1G73110.2	78.302	318	69	0	102	419	18	335	0.0	538
Msa0305810	AT2G39730.2	47.246	345	168	9	76	414	81	417	1.63e-103	314
Msa0305810	AT2G39730.3	47.246	345	168	9	76	414	81	417	1.85e-103	314
Msa0305810	AT2G39730.1	47.246	345	168	9	76	414	81	417	7.53e-103	313

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Find 98 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACATCGTCAATGATGC+CGG	0.544929	2_3:+63836819	None:intergenic
AACCTGTTATTATGTCTGCT+GGG	0.507623	2_3:-63836543	Msa0305810:CDS
AAGAAATTAAGATTAGTTGA+AGG	0.489328	2_3:+63831673	None:intergenic
AAGACTAATAGAAAGCATGT+TGG	0.599434	2_3:-63832019	Msa0305810:exon
AAGATTAGTTGAAGGTAATT+AGG	0.208685	2_3:+63831681	None:intergenic
AATAACAGGTTCAACTCCCA+TGG	0.625979	2_3:+63836555	None:intergenic
AATCCTACAAGAGTTAGTAT+TGG	0.579350	2_3:-63835835	Msa0305810:CDS
AATGACATTGATGCTGGTCT+TGG	0.482478	2_3:-63836114	Msa0305810:CDS
AATGGAAACTAAACTTTCGA+AGG	0.571792	2_3:-63832060	Msa0305810:CDS
ACAACTTTGTCCATGAAAAG+AGG	0.524262	2_3:+63836697	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAGAAGATAAGGAATGTT+TGG	-	chr2_3:63831689-63831708	Msa0305810:three_prime_UTR	30.0%
TTGGTTGTTATGTTGTTATG+TGG	-	chr2_3:63831708-63831727	Msa0305810:three_prime_UTR	30.0%
ACGATAATCAAAGACAATGT+CGG	+	chr2_3:63832070-63832089	None:intergenic	30.0%
AGATCATTTCAATACCTTCA+AGG	-	chr2_3:63832102-63832121	Msa0305810:CDS	30.0%
CAATGTAATAATCTCCTTGA+AGG	+	chr2_3:63832119-63832138	None:intergenic	30.0%
TTCCTTTGATTCTTGGTATT+TGG	-	chr2_3:63832211-63832230	Msa0305810:intron	30.0%
TCCTTTGATTCTTGGTATTT+GGG	-	chr2_3:63832212-63832231	Msa0305810:intron	30.0%
AAAAAGTCGTAACTTGATTC+TGG	+	chr2_3:63832395-63832414	None:intergenic	30.0%
CAGACTACTTTAGCAAATTA+AGG	+	chr2_3:63832656-63832675	None:intergenic	30.0%
TACATTTGCTTTCTTGATAC+AGG	-	chr2_3:63832678-63832697	Msa0305810:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	63831685	63837175	63831685	ID=Msa0305810;Name=Msa0305810
chr2_3	mRNA	63831685	63837175	63831685	ID=Msa0305810-mRNA-1;Parent=Msa0305810;Name=Msa0305810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=78\|1\|1\|1\|0.85\|0.75\|8\|281\|419
chr2_3	exon	63831685	63831736	63831685	ID=Msa0305810-mRNA-1:exon:21337;Parent=Msa0305810-mRNA-1
chr2_3	exon	63831805	63832141	63831805	ID=Msa0305810-mRNA-1:exon:21336;Parent=Msa0305810-mRNA-1
chr2_3	exon	63833400	63833492	63833400	ID=Msa0305810-mRNA-1:exon:21335;Parent=Msa0305810-mRNA-1
chr2_3	exon	63834643	63834698	63834643	ID=Msa0305810-mRNA-1:exon:21334;Parent=Msa0305810-mRNA-1
chr2_3	exon	63835320	63835426	63835320	ID=Msa0305810-mRNA-1:exon:21333;Parent=Msa0305810-mRNA-1
chr2_3	exon	63835718	63835919	63835718	ID=Msa0305810-mRNA-1:exon:21332;Parent=Msa0305810-mRNA-1
chr2_3	exon	63836106	63836160	63836106	ID=Msa0305810-mRNA-1:exon:21331;Parent=Msa0305810-mRNA-1
chr2_3	exon	63836459	63837175	63836459	ID=Msa0305810-mRNA-1:exon:21330;Parent=Msa0305810-mRNA-1
chr2_3	five_prime_UTR	63837098	63837175	63837098	ID=Msa0305810-mRNA-1:five_prime_utr;Parent=Msa0305810-mRNA-1
chr2_3	CDS	63836459	63837097	63836459	ID=Msa0305810-mRNA-1:cds;Parent=Msa0305810-mRNA-1
chr2_3	CDS	63836106	63836160	63836106	ID=Msa0305810-mRNA-1:cds;Parent=Msa0305810-mRNA-1
chr2_3	CDS	63835718	63835919	63835718	ID=Msa0305810-mRNA-1:cds;Parent=Msa0305810-mRNA-1
chr2_3	CDS	63835320	63835426	63835320	ID=Msa0305810-mRNA-1:cds;Parent=Msa0305810-mRNA-1
chr2_3	CDS	63834643	63834698	63834643	ID=Msa0305810-mRNA-1:cds;Parent=Msa0305810-mRNA-1
chr2_3	CDS	63833400	63833492	63833400	ID=Msa0305810-mRNA-1:cds;Parent=Msa0305810-mRNA-1
chr2_3	CDS	63832034	63832141	63832034	ID=Msa0305810-mRNA-1:cds;Parent=Msa0305810-mRNA-1
chr2_3	three_prime_UTR	63831805	63832033	63831805	ID=Msa0305810-mRNA-1:three_prime_utr;Parent=Msa0305810-mRNA-1
chr2_3	three_prime_UTR	63831685	63831736	63831685	ID=Msa0305810-mRNA-1:three_prime_utr;Parent=Msa0305810-mRNA-1

Gene Sequence

>Msa0305810

ATGGCGAAGCTGCTATTACCTCTACGACCGCCAACTTCTTCCCATTCTATTTCTAATTCATTCTCATTCAAAAAACCATCGCATTCGCAGCAATTCTCATGGGTTCGATGCTGTAGTAATAGTGATGATGAAAACAACAAGAAGAAGAAGTTATCAGAGCAATCTTCTTGGGAAACTAAGGATTCTGAAGGAAGAGACTATCTCTACAGACTTGGCGCTGAAGCTGATAACATGAACATCGCCGTTGGTCAACGTGCCGGCATCATTGACGATGTCTTTGCCGGCAATTTTCTCGGCAGAGACTCCGACATTGTCTTTGATTATCGTCAGAAAGTCACTAGATCATTTCAATACCTTCAAGGAGATTATTACATTGCTCCTCTTTTCATGGACAAAGTTGTTACTCACATTACCAAAAACTACCTTTCTCATCTCCTCAATGCTAAAGTTCCTTTGATTCTTGGTATTTGGGGTGGTAAAGGCCAAGGTAAAACTTTTCAAACTGAACTTATCTTTCGTGCCATGGGAGTTGAACCTGTTATTATGTCTGCTGGGGAACTTGAATCTGAAAATGCTGGTGAGCCTGGAAGATTGATTCGTGAGCGCTACAGAACCGCTTCTAGAGTCGTCCAGAATCAAGGAAAGATGAGCTGTTTAATGATCAATGACATTGATGCTGGTCTTGGTCGATTTGGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTATGTGACAATCCTACAAGAGTTAGTATTGGTCAAGATTGGCGAGAAGCAGATGTCACAAACAGAATTCCAATCATTGTAACAGGAAATGATCTTTCAACTATTTATGCTCCATTGATACGTGATGGAAGGATGGATAAATTTTACTGGCAGCCTAACCAGGAAGATATACTGAATATTGTTCAAAGAATGTATGAGAAAGATGGCATATCCAGGGATGAAGTTGAAAAAGTTGTGAAAACTTTTCCTAATCAAGCATTGGACTTTTATGGAGCTCTAAGATCGCGTACATATGACAGATCTATTTTAAAGTGGGTTGATGATATTGGAGGTGCTGAAAGTTTTGCATCCAAATTTCTCAAAAGAAGAAAGGACCAGAATCTTCCTGTATTTATTCCTCCAGAGCAAACGATCGATGCTTTACTTGAGTCAGGTTATTCTCTGCTCAAAGAACAACAGTTGATAATGGAAACTAAACTTTCGAAGGAATACATGAAGAACATTGAAGACTAA

Protein sequence

>Msa0305810

MAKLLLPLRPPTSSHSISNSFSFKKPSHSQQFSWVRCCSNSDDENNKKKKLSEQSSWETKDSEGRDYLYRLGAEADNMNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESENAGEPGRLIRERYRTASRVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPNQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGAESFASKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYMKNIED*