AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127530 MtrunA17_Chr7g0271591 98.621 290 4 0 1 290 1 290 0.0 588
Msa1127530 MtrunA17_Chr1g0185571 36.220 254 147 7 45 290 66 312 1.73e-42 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127530 AT1G09340.1 86.207 290 40 0 1 290 1 290 0.0 504
Msa1127530 AT1G09340.2 89.147 258 28 0 33 290 34 291 1.61e-170 478
Msa1127530 AT3G63140.1 35.743 249 145 7 49 289 75 316 1.14e-41 149

Find 76 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATCAAAGGATGTTAAT+TGG 0.201636 7_3:+79165258 Msa1127530:CDS
TTTCCCTTGTGCCTGCTCTT+AGG 0.208932 7_3:-79165215 None:intergenic
ATAAGGCCAGTTTATATCTA+TGG 0.260089 7_3:+79165287 Msa1127530:CDS
GACAAATATGTCACATTTGA+TGG 0.302971 7_3:+79165907 Msa1127530:CDS
TTCCCTTGTGCCTGCTCTTA+GGG 0.306111 7_3:-79165214 None:intergenic
GATGTTGTTTATGACATTAA+TGG 0.315079 7_3:+79164508 Msa1127530:CDS
CACCAAGAAAATCCTCATAA+TGG 0.331776 7_3:+79164099 Msa1127530:CDS
ATTGGATGCTCTGCCTAATC+TGG 0.333691 7_3:+79164688 Msa1127530:CDS
GCCACCAATCTTGCCATGTT+TGG 0.337037 7_3:-79163634 None:intergenic
ATGTTAATTGGACTTCTATA+AGG 0.345137 7_3:+79165270 Msa1127530:CDS
ATTAGGCAGAGCATCCAATA+TGG 0.360176 7_3:-79164684 None:intergenic
GAGACAATTAAAGACCCTTT+TGG 0.363380 7_3:-79164067 None:intergenic
CCTGAGCCGGGAATAGGAAT+TGG 0.370539 7_3:-79165368 None:intergenic
AAGACTTCAAACTCAAATTC+AGG 0.384461 7_3:+79163720 Msa1127530:CDS
TCTTCTCTTTCTGATTTCAA+TGG 0.386606 7_3:+79163694 Msa1127530:CDS
ACAGCTTACTGTTCCAGATT+AGG 0.389740 7_3:-79164701 None:intergenic
TTTATTTACTGCTCTTCTGC+TGG 0.399157 7_3:+79164948 Msa1127530:CDS
TGTATTCCTGAGCCGGGAAT+AGG 0.399617 7_3:-79165374 None:intergenic
GATGTTGAATATCTGCTTGC+TGG 0.402494 7_3:-79165878 None:intergenic
AACGGTCCATAGATATAAAC+TGG 0.409144 7_3:-79165293 None:intergenic
TTTGGTTGTGAGGTGTGTAT+AGG 0.411514 7_3:-79163616 None:intergenic
CCTGGCAATTGTTGAGTGAT+AGG 0.412323 7_3:-79164297 None:intergenic
ACCAAGAAAATCCTCATAAT+GGG 0.424978 7_3:+79164100 Msa1127530:CDS
ACAACCAAACATGGCAAGAT+TGG 0.427160 7_3:+79163630 Msa1127530:exon
TCTTATCGCAACATAATAAG+AGG 0.445723 7_3:+79163556 Msa1127530:five_prime_UTR
AACACAACTTGGCCATGTTA+AGG 0.456532 7_3:+79165400 Msa1127530:CDS
TGTTATCTGTATTCCTGAGC+CGG 0.460045 7_3:-79165381 None:intergenic
AGAAAGTTTGTTGCAATCAA+AGG 0.466291 7_3:+79165247 Msa1127530:CDS
AATGAAAGGCTGTGGATTGA+AGG 0.467137 7_3:+79163508 Msa1127530:five_prime_UTR
GAAGGTTCTTGGAAATGAAA+AGG 0.475800 7_3:+79165855 Msa1127530:CDS
CTGAGCCGGGAATAGGAATT+GGG 0.478279 7_3:-79165367 None:intergenic
AGAAGAAGTTGAGCCCATAT+TGG 0.478482 7_3:+79164670 Msa1127530:CDS
AAGCAGATATTCAACATCTC+AGG 0.480050 7_3:+79165883 Msa1127530:CDS
TCTAGGCAACTTGTCAAAGA+AGG 0.493271 7_3:+79164151 Msa1127530:CDS
ATCTAGTACCTCCCATTATG+AGG 0.496492 7_3:-79164111 None:intergenic
TCATAGATCTTGCATTTGAA+AGG 0.505334 7_3:+79164433 Msa1127530:intron
TCTTGCCATGTTTGGTTGTG+AGG 0.506728 7_3:-79163626 None:intergenic
CCAATTCCTATTCCCGGCTC+AGG 0.512651 7_3:+79165368 Msa1127530:CDS
TCTTGCATTTGAAAGGAGAC+AGG 0.513755 7_3:+79164440 Msa1127530:CDS
GGCGACCGGCTTTCAATCTG+TGG 0.517412 7_3:-79165346 None:intergenic
GGAAAGATAGTTGACTCTGT+TGG 0.532531 7_3:-79163660 None:intergenic
AGGAGGGAAATGAAAGGCTG+TGG 0.536427 7_3:+79163500 Msa1127530:five_prime_UTR
TATTATGTTGCGATAAGACT+AGG 0.543584 7_3:-79163551 None:intergenic
GTTATCTGTATTCCTGAGCC+GGG 0.543891 7_3:-79165380 None:intergenic
ATGAAAGGCTGTGGATTGAA+GGG 0.546104 7_3:+79163509 Msa1127530:five_prime_UTR
ACCAAACATGGCAAGATTGG+TGG 0.546152 7_3:+79163633 Msa1127530:exon
TTAGGCAGAGCATCCAATAT+GGG 0.549553 7_3:-79164683 None:intergenic
GGGAATAGGAATTGGGCGAC+CGG 0.549653 7_3:-79165360 None:intergenic
CTGTGGATTGAAGGGAATTG+AGG 0.551893 7_3:+79163517 Msa1127530:five_prime_UTR
TCAGAAAGAGAAGAAGCTAA+AGG 0.564522 7_3:-79163685 None:intergenic
TAGGTAACTTTATTTACAAG+AGG 0.566421 7_3:+79164267 Msa1127530:intron
TGGATTGAAGGGAATTGAGG+TGG 0.575121 7_3:+79163520 Msa1127530:five_prime_UTR
ATTGAAGGGAATTGAGGTGG+AGG 0.578640 7_3:+79163523 Msa1127530:five_prime_UTR
ATGGGAGGTACTAGATTCAT+CGG 0.579900 7_3:+79164118 Msa1127530:CDS
ACACACCTCACAACCAAACA+TGG 0.584858 7_3:+79163621 Msa1127530:exon
AAATCTAGTCTCTCAGCAGA+AGG 0.585063 7_3:+79164481 Msa1127530:CDS
TCAACAGGGTTGTAATTCAA+CGG 0.586816 7_3:-79165311 None:intergenic
ATGCAGTTGACCCTAAGAGC+AGG 0.590626 7_3:+79165204 Msa1127530:CDS
CCTATCACTCAACAATTGCC+AGG 0.592614 7_3:+79164297 Msa1127530:CDS
GAAAGAGAAGAAGCTAAAGG+AGG 0.592682 7_3:-79163682 None:intergenic
TGACCCTAAGAGCAGGCACA+AGG 0.597458 7_3:+79165211 Msa1127530:CDS
AAAGAGAAGAAGCTAAAGGA+GGG 0.599842 7_3:-79163681 None:intergenic
AAGTCAGTGTCTGATTCACC+TGG 0.605373 7_3:-79164315 None:intergenic
ATTACAACCCTGTTGAAGAG+TGG 0.609313 7_3:+79165318 Msa1127530:CDS
ATTAGCAAAAGCATGTGCTA+AGG 0.614920 7_3:+79165930 Msa1127530:CDS
ACTTGTCAAAGAAGGTCACC+AGG 0.624824 7_3:+79164159 Msa1127530:CDS
GCATTTGAAAGGAGACAGGA+AGG 0.625083 7_3:+79164444 Msa1127530:CDS
AAAAGTTATTAAGTGGAGAG+CGG 0.625897 7_3:+79166449 Msa1127530:intron
GGCATACGTTTCAGGACGAG+AGG 0.630652 7_3:+79164646 Msa1127530:intron
ATTAAACTGACCTCGGCGTG+AGG 0.631201 7_3:-79164996 None:intergenic
GGAATACAGATAACACAACT+TGG 0.631393 7_3:+79165389 Msa1127530:CDS
AAGAAAATCCTCATAATGGG+AGG 0.637190 7_3:+79164103 Msa1127530:CDS
AAAAGAAGGAGGGAAATGAA+AGG 0.652361 7_3:+79163494 None:intergenic
ATTACATTCATACCTTAACA+TGG 0.662084 7_3:-79165412 None:intergenic
GACCCTAAGAGCAGGCACAA+GGG 0.675285 7_3:+79165212 Msa1127530:CDS
TGATTTATTACCTCACGCCG+AGG 0.684255 7_3:+79164986 Msa1127530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATACATTATTTATTTC+CGG - chr7_3:79164216-79164235 None:intergenic 10.0%
!!! AATAAATAATGTATTTTTGA+AGG + chr7_3:79164218-79164237 Msa1127530:intron 10.0%
!! ACATTTAATTATAAACAAAA+TGG - chr7_3:79164911-79164930 None:intergenic 10.0%
!!! TTTTGTTTATAATTAAATGT+TGG + chr7_3:79164911-79164930 Msa1127530:intron 10.0%
!! TAGTAAAACAAAATATAATA+TGG - chr7_3:79165090-79165109 None:intergenic 10.0%
!! AATATAAACAAAACTAATAA+AGG - chr7_3:79165157-79165176 None:intergenic 10.0%
!! TCTTTCAAAAAAAAAAAAAA+AGG + chr7_3:79165434-79165453 Msa1127530:intron 10.0%
!!! AAATAACTTGTAAATTTGAT+AGG + chr7_3:79164248-79164267 Msa1127530:intron 15.0%
!!! AAATAAGGAAACAAATTTTT+AGG + chr7_3:79164843-79164862 Msa1127530:intron 15.0%
!!! TTTTGTTTATATTTTATCTC+TGG + chr7_3:79165164-79165183 Msa1127530:intron 15.0%
!!! TTTTTTGAAAAGTTATTAAG+TGG + chr7_3:79166442-79166461 Msa1127530:intron 15.0%
!! ATCTCAAATCAAATTATTAC+CGG - chr7_3:79163884-79163903 None:intergenic 20.0%
!!! ATTTGAGATATAACAAATGT+CGG + chr7_3:79163895-79163914 Msa1127530:intron 20.0%
!!! TTTAACATGCTAATTGATTT+TGG + chr7_3:79164017-79164036 Msa1127530:intron 20.0%
!! TTAACATGAAGAATAAGAAA+TGG - chr7_3:79164573-79164592 None:intergenic 20.0%
!!! TCAAATTCAATGATTTTATC+TGG + chr7_3:79164625-79164644 Msa1127530:intron 20.0%
!!! TATAAATGCAATTGTCATTT+TGG + chr7_3:79164765-79164784 Msa1127530:intron 20.0%
!!! TTGATCACTTTTTTATCAAT+AGG + chr7_3:79165680-79165699 Msa1127530:intron 20.0%
!!! TATGTGATTTTGACTAAAAA+TGG + chr7_3:79165798-79165817 Msa1127530:intron 20.0%
! TACAGTTGAAAAGAAAAACA+TGG + chr7_3:79164041-79164060 Msa1127530:intron 25.0%
! AGTAATAAATCGTATATACC+TGG - chr7_3:79164180-79164199 None:intergenic 25.0%
!!! TAATGTATTTTTGAAGGTGT+AGG + chr7_3:79164224-79164243 Msa1127530:intron 25.0%
!! TAGGTAACTTTATTTACAAG+AGG + chr7_3:79164267-79164286 Msa1127530:intron 25.0%
!! GATGTTGTTTATGACATTAA+TGG + chr7_3:79164508-79164527 Msa1127530:CDS 25.0%
! TGACTTTGATTACACAAATA+AGG + chr7_3:79164828-79164847 Msa1127530:intron 25.0%
! ATGTTAATTGGACTTCTATA+AGG + chr7_3:79165270-79165289 Msa1127530:CDS 25.0%
! ATTACATTCATACCTTAACA+TGG - chr7_3:79165415-79165434 None:intergenic 25.0%
! TAAAGAACTGTAACATCTAA+AGG - chr7_3:79165475-79165494 None:intergenic 25.0%
!! AATTTTGTGATTTGAAGACT+TGG + chr7_3:79165515-79165534 Msa1127530:intron 25.0%
! AATGAACTTAACATGATAGT+AGG + chr7_3:79165762-79165781 Msa1127530:intron 25.0%
! AAAAATGGTTAAATTGTGAC+AGG + chr7_3:79165813-79165832 Msa1127530:intron 25.0%
!! TTTTAAGCTATTGAAACCAT+TGG - chr7_3:79166286-79166305 None:intergenic 25.0%
!!! TTATTTTGTTCTGTTCATGT+AGG - chr7_3:79166387-79166406 None:intergenic 25.0%
TATTATGTTGCGATAAGACT+AGG - chr7_3:79163554-79163573 None:intergenic 30.0%
TCTTATCGCAACATAATAAG+AGG + chr7_3:79163556-79163575 Msa1127530:five_prime_UTR 30.0%
TCTTCTCTTTCTGATTTCAA+TGG + chr7_3:79163694-79163713 Msa1127530:CDS 30.0%
AAGACTTCAAACTCAAATTC+AGG + chr7_3:79163720-79163739 Msa1127530:CDS 30.0%
ATCACTTTCATTTCATGCAT+AGG + chr7_3:79163781-79163800 Msa1127530:intron 30.0%
AGTAATGTTTCTCACATACA+CGG + chr7_3:79163836-79163855 Msa1127530:intron 30.0%
ACCAAGAAAATCCTCATAAT+GGG + chr7_3:79164100-79164119 Msa1127530:CDS 30.0%
ATTACTCATTTGACTCTAAC+CGG + chr7_3:79164194-79164213 Msa1127530:intron 30.0%
CATTTACAATTAGCATACCT+TGG - chr7_3:79164355-79164374 None:intergenic 30.0%
GTAAATGTAAACATCAAAGC+TGG + chr7_3:79164368-79164387 Msa1127530:intron 30.0%
TCATAGATCTTGCATTTGAA+AGG + chr7_3:79164433-79164452 Msa1127530:intron 30.0%
!! AAATGTTGGTTCTAAATGTC+AGG + chr7_3:79164925-79164944 Msa1127530:intron 30.0%
AGTGTAAATTAAACTGACCT+CGG - chr7_3:79165006-79165025 None:intergenic 30.0%
!! AGAAAGTTTGTTGCAATCAA+AGG + chr7_3:79165247-79165266 Msa1127530:CDS 30.0%
TGCAATCAAAGGATGTTAAT+TGG + chr7_3:79165258-79165277 Msa1127530:CDS 30.0%
ATAAGGCCAGTTTATATCTA+TGG + chr7_3:79165287-79165306 Msa1127530:CDS 30.0%
TATCATATCTCATCCAATGT+AGG - chr7_3:79165570-79165589 None:intergenic 30.0%
GACAAATATGTCACATTTGA+TGG + chr7_3:79165907-79165926 Msa1127530:CDS 30.0%
AGAGAGAGAAAAAAATTGTG+GGG - chr7_3:79166107-79166126 None:intergenic 30.0%
CAGAGAGAGAAAAAAATTGT+GGG - chr7_3:79166108-79166127 None:intergenic 30.0%
AGCTTTCAACATGTTTAAAC+TGG - chr7_3:79166221-79166240 None:intergenic 30.0%
GCTTAAAATTGCCATTCAAT+AGG + chr7_3:79166298-79166317 Msa1127530:intron 30.0%
TAAATAGTCCATGAAGTTTC+TGG + chr7_3:79166404-79166423 Msa1127530:intron 30.0%
AAAGTAATCCAGAAACTTCA+TGG - chr7_3:79166415-79166434 None:intergenic 30.0%
AAAAGTTATTAAGTGGAGAG+CGG + chr7_3:79166449-79166468 Msa1127530:intron 30.0%
AAAGAGAAGAAGCTAAAGGA+GGG - chr7_3:79163684-79163703 None:intergenic 35.0%
TCAGAAAGAGAAGAAGCTAA+AGG - chr7_3:79163688-79163707 None:intergenic 35.0%
ACTTTCATTTCATGCATAGG+AGG + chr7_3:79163784-79163803 Msa1127530:intron 35.0%
AGAAAAACATGGCAACCAAA+AGG + chr7_3:79164052-79164071 Msa1127530:CDS 35.0%
GAAAAACATGGCAACCAAAA+GGG + chr7_3:79164053-79164072 Msa1127530:CDS 35.0%
! GAGACAATTAAAGACCCTTT+TGG - chr7_3:79164070-79164089 None:intergenic 35.0%
CACCAAGAAAATCCTCATAA+TGG + chr7_3:79164099-79164118 Msa1127530:CDS 35.0%
! TCCCATTATGAGGATTTTCT+TGG - chr7_3:79164104-79164123 None:intergenic 35.0%
! AAGAAAATCCTCATAATGGG+AGG + chr7_3:79164103-79164122 Msa1127530:CDS 35.0%
!!! CTTTGCTGATTTTTCTTCCA+AGG + chr7_3:79164335-79164354 Msa1127530:CDS 35.0%
GAAATGGTATTCAGTACAGA+AGG - chr7_3:79164557-79164576 None:intergenic 35.0%
! TTTTATCTGGCATACGTTTC+AGG + chr7_3:79164638-79164657 Msa1127530:intron 35.0%
TTTATTTACTGCTCTTCTGC+TGG + chr7_3:79164948-79164967 Msa1127530:CDS 35.0%
AACGGTCCATAGATATAAAC+TGG - chr7_3:79165296-79165315 None:intergenic 35.0%
TCAACAGGGTTGTAATTCAA+CGG - chr7_3:79165314-79165333 None:intergenic 35.0%
! TTTTTCCACAGATTGAAAGC+CGG + chr7_3:79165341-79165360 Msa1127530:CDS 35.0%
GGAATACAGATAACACAACT+TGG + chr7_3:79165389-79165408 Msa1127530:CDS 35.0%
TACAAAATCAGCAGTATCAG+AGG - chr7_3:79165630-79165649 None:intergenic 35.0%
! GATTTTGTAGCAGTTCACTT+TGG + chr7_3:79165641-79165660 Msa1127530:intron 35.0%
TTTGTAAATGCTTGCCTTCT+AGG + chr7_3:79165706-79165725 Msa1127530:intron 35.0%
ATCTTCAAAAGCAACCTAGA+AGG - chr7_3:79165723-79165742 None:intergenic 35.0%
GGTTAAATTGTGACAGGATT+TGG + chr7_3:79165819-79165838 Msa1127530:intron 35.0%
GAAGGTTCTTGGAAATGAAA+AGG + chr7_3:79165855-79165874 Msa1127530:CDS 35.0%
AAGCAGATATTCAACATCTC+AGG + chr7_3:79165883-79165902 Msa1127530:CDS 35.0%
! ATTAGCAAAAGCATGTGCTA+AGG + chr7_3:79165930-79165949 Msa1127530:CDS 35.0%
GAGAGAGAAAAAAATTGTGG+GGG - chr7_3:79166106-79166125 None:intergenic 35.0%
GCAGAGAGAGAAAAAAATTG+TGG - chr7_3:79166109-79166128 None:intergenic 35.0%
TATCCTTGTTGAAGATGAAG+TGG - chr7_3:79166261-79166280 None:intergenic 35.0%
TTCTGTTCATGTAGGTAGTT+GGG - chr7_3:79166379-79166398 None:intergenic 35.0%
! AATGAAAGGCTGTGGATTGA+AGG + chr7_3:79163508-79163527 Msa1127530:five_prime_UTR 40.0%
! ATGAAAGGCTGTGGATTGAA+GGG + chr7_3:79163509-79163528 Msa1127530:five_prime_UTR 40.0%
TTTGGTTGTGAGGTGTGTAT+AGG - chr7_3:79163619-79163638 None:intergenic 40.0%
ACAACCAAACATGGCAAGAT+TGG + chr7_3:79163630-79163649 Msa1127530:exon 40.0%
! GGAAAGATAGTTGACTCTGT+TGG - chr7_3:79163663-79163682 None:intergenic 40.0%
GAAAGAGAAGAAGCTAAAGG+AGG - chr7_3:79163685-79163704 None:intergenic 40.0%
TTCATTTCATGCATAGGAGG+AGG + chr7_3:79163787-79163806 Msa1127530:intron 40.0%
CTATGTAGCATCAACACTTC+AGG - chr7_3:79163923-79163942 None:intergenic 40.0%
ATCTAGTACCTCCCATTATG+AGG - chr7_3:79164114-79164133 None:intergenic 40.0%
!! ATGGGAGGTACTAGATTCAT+CGG + chr7_3:79164118-79164137 Msa1127530:CDS 40.0%
!! TCATCGGTGTGTTTTTGTCT+AGG + chr7_3:79164134-79164153 Msa1127530:CDS 40.0%
TCTAGGCAACTTGTCAAAGA+AGG + chr7_3:79164151-79164170 Msa1127530:CDS 40.0%
TCTTGCATTTGAAAGGAGAC+AGG + chr7_3:79164440-79164459 Msa1127530:CDS 40.0%
AAATCTAGTCTCTCAGCAGA+AGG + chr7_3:79164481-79164500 Msa1127530:CDS 40.0%
AGAAGAAGTTGAGCCCATAT+TGG + chr7_3:79164670-79164689 Msa1127530:CDS 40.0%
! TTAGGCAGAGCATCCAATAT+GGG - chr7_3:79164686-79164705 None:intergenic 40.0%
! ATTAGGCAGAGCATCCAATA+TGG - chr7_3:79164687-79164706 None:intergenic 40.0%
ACAGCTTACTGTTCCAGATT+AGG - chr7_3:79164704-79164723 None:intergenic 40.0%
TGCCATGATGCAATTGTTTG+AGG + chr7_3:79165053-79165072 Msa1127530:intron 40.0%
TGCCTCAAACAATTGCATCA+TGG - chr7_3:79165058-79165077 None:intergenic 40.0%
ATTACAACCCTGTTGAAGAG+TGG + chr7_3:79165318-79165337 Msa1127530:CDS 40.0%
GGAAAAACCACTCTTCAACA+GGG - chr7_3:79165328-79165347 None:intergenic 40.0%
TGGAAAAACCACTCTTCAAC+AGG - chr7_3:79165329-79165348 None:intergenic 40.0%
TGTTATCTGTATTCCTGAGC+CGG - chr7_3:79165384-79165403 None:intergenic 40.0%
AACACAACTTGGCCATGTTA+AGG + chr7_3:79165400-79165419 Msa1127530:CDS 40.0%
CATGTTGAGAAGTCCTACAT+TGG + chr7_3:79165554-79165573 Msa1127530:intron 40.0%
! ACAGCTTTTGTGAAGGTTCT+TGG + chr7_3:79165844-79165863 Msa1127530:CDS 40.0%
GATGTTGAATATCTGCTTGC+TGG - chr7_3:79165881-79165900 None:intergenic 40.0%
AAAAAATTGTGGGGGAAGGA+GGG - chr7_3:79166098-79166117 None:intergenic 40.0%
AAAAAAATTGTGGGGGAAGG+AGG - chr7_3:79166099-79166118 None:intergenic 40.0%
GAGAAAAAAATTGTGGGGGA+AGG - chr7_3:79166102-79166121 None:intergenic 40.0%
CTTCAACAAGGATACTCCAA+TGG + chr7_3:79166267-79166286 Msa1127530:intron 40.0%
ATTGCCATTCAATAGGCCAT+TGG + chr7_3:79166305-79166324 Msa1127530:intron 40.0%
ATCTCCAATGGCCTATTGAA+TGG - chr7_3:79166312-79166331 None:intergenic 40.0%
ATTCAATAGGCCATTGGAGA+TGG + chr7_3:79166311-79166330 Msa1127530:intron 40.0%
GTTCTGTTCATGTAGGTAGT+TGG - chr7_3:79166380-79166399 None:intergenic 40.0%
! CTGTGGATTGAAGGGAATTG+AGG + chr7_3:79163517-79163536 Msa1127530:five_prime_UTR 45.0%
TGGATTGAAGGGAATTGAGG+TGG + chr7_3:79163520-79163539 Msa1127530:five_prime_UTR 45.0%
ATTGAAGGGAATTGAGGTGG+AGG + chr7_3:79163523-79163542 Msa1127530:five_prime_UTR 45.0%
ACACACCTCACAACCAAACA+TGG + chr7_3:79163621-79163640 Msa1127530:exon 45.0%
TCTTGCCATGTTTGGTTGTG+AGG - chr7_3:79163629-79163648 None:intergenic 45.0%
ACCAAACATGGCAAGATTGG+TGG + chr7_3:79163633-79163652 Msa1127530:exon 45.0%
TTTCTCACATACACGGACAC+CGG + chr7_3:79163843-79163862 Msa1127530:intron 45.0%
!! CCGGTGTTGAGTATTTTGTC+CGG - chr7_3:79163865-79163884 None:intergenic 45.0%
CCGGACAAAATACTCAACAC+CGG + chr7_3:79163862-79163881 Msa1127530:intron 45.0%
ACTTGTCAAAGAAGGTCACC+AGG + chr7_3:79164159-79164178 Msa1127530:CDS 45.0%
CCTGGCAATTGTTGAGTGAT+AGG - chr7_3:79164300-79164319 None:intergenic 45.0%
CCTATCACTCAACAATTGCC+AGG + chr7_3:79164297-79164316 Msa1127530:CDS 45.0%
AAGTCAGTGTCTGATTCACC+TGG - chr7_3:79164318-79164337 None:intergenic 45.0%
GCATTTGAAAGGAGACAGGA+AGG + chr7_3:79164444-79164463 Msa1127530:CDS 45.0%
ATTGGATGCTCTGCCTAATC+TGG + chr7_3:79164688-79164707 Msa1127530:CDS 45.0%
TGATTTATTACCTCACGCCG+AGG + chr7_3:79164986-79165005 Msa1127530:CDS 45.0%
GTTATCTGTATTCCTGAGCC+GGG - chr7_3:79165383-79165402 None:intergenic 45.0%
! TTTGGCGACAGCTTTTGTGA+AGG + chr7_3:79165837-79165856 Msa1127530:CDS 45.0%
GCAATTAAAACACTGACGCG+TGG + chr7_3:79166185-79166204 Msa1127530:intron 45.0%
CCTTGTTGAAGATGAAGTGG+AGG - chr7_3:79166258-79166277 None:intergenic 45.0%
CCTCCACTTCATCTTCAACA+AGG + chr7_3:79166255-79166274 Msa1127530:intron 45.0%
TCCTCTTAGACCATCTCCAA+TGG - chr7_3:79166324-79166343 None:intergenic 45.0%
TGGAGATGGTCTAAGAGGAA+AGG + chr7_3:79166325-79166344 Msa1127530:intron 45.0%
AGGAGGGAAATGAAAGGCTG+TGG + chr7_3:79163500-79163519 Msa1127530:five_prime_UTR 50.0%
GCCACCAATCTTGCCATGTT+TGG - chr7_3:79163637-79163656 None:intergenic 50.0%
ATTAAACTGACCTCGGCGTG+AGG - chr7_3:79164999-79165018 None:intergenic 50.0%
ATGCAGTTGACCCTAAGAGC+AGG + chr7_3:79165204-79165223 Msa1127530:CDS 50.0%
TTCCCTTGTGCCTGCTCTTA+GGG - chr7_3:79165217-79165236 None:intergenic 50.0%
TTTCCCTTGTGCCTGCTCTT+AGG - chr7_3:79165218-79165237 None:intergenic 50.0%
CTGAGCCGGGAATAGGAATT+GGG - chr7_3:79165370-79165389 None:intergenic 50.0%
TGTATTCCTGAGCCGGGAAT+AGG - chr7_3:79165377-79165396 None:intergenic 50.0%
GCCATTGGAGATGGTCTAAG+AGG + chr7_3:79166320-79166339 Msa1127530:intron 50.0%
GGCATACGTTTCAGGACGAG+AGG + chr7_3:79164646-79164665 Msa1127530:intron 55.0%
TGACCCTAAGAGCAGGCACA+AGG + chr7_3:79165211-79165230 Msa1127530:CDS 55.0%
GACCCTAAGAGCAGGCACAA+GGG + chr7_3:79165212-79165231 Msa1127530:CDS 55.0%
GGGAATAGGAATTGGGCGAC+CGG - chr7_3:79165363-79165382 None:intergenic 55.0%
GGTCGCCCAATTCCTATTCC+CGG + chr7_3:79165362-79165381 Msa1127530:CDS 55.0%
CCTGAGCCGGGAATAGGAAT+TGG - chr7_3:79165371-79165390 None:intergenic 55.0%
CCAATTCCTATTCCCGGCTC+AGG + chr7_3:79165368-79165387 Msa1127530:CDS 55.0%
GACACGTGGTGCATCAGGAT+TGG - chr7_3:79166076-79166095 None:intergenic 55.0%
! GGCGACCGGCTTTCAATCTG+TGG - chr7_3:79165349-79165368 None:intergenic 60.0%
GTGCCTAACACACGCCGACA+GGG - chr7_3:79166152-79166171 None:intergenic 60.0%
AGTGCCTAACACACGCCGAC+AGG - chr7_3:79166153-79166172 None:intergenic 60.0%
AACACTGACGCGTGGCACTG+CGG + chr7_3:79166193-79166212 Msa1127530:intron 60.0%
GGAGGGACACGTGGTGCATC+AGG - chr7_3:79166081-79166100 None:intergenic 65.0%
CAGGGCGCGTCAGGCTTCAT+TGG - chr7_3:79166134-79166153 None:intergenic 65.0%
TGAAGCCTGACGCGCCCTGT+CGG + chr7_3:79166135-79166154 Msa1127530:intron 65.0%
ACACTGACGCGTGGCACTGC+GGG + chr7_3:79166194-79166213 Msa1127530:intron 65.0%
GTGGGGGAAGGAGGGACACG+TGG - chr7_3:79166090-79166109 None:intergenic 70.0%
GCGCCCTGTCGGCGTGTGTT+AGG + chr7_3:79166146-79166165 Msa1127530:intron 70.0%
ACACGCCGACAGGGCGCGTC+AGG - chr7_3:79166143-79166162 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79163499 79166489 79163499 ID=Msa1127530;Name=Msa1127530
chr7_3 mRNA 79163499 79166489 79163499 ID=Msa1127530-mRNA-1;Parent=Msa1127530;Name=Msa1127530-mRNA-1;_AED=0.03;_eAED=0.03;_QI=141|0.87|0.77|0.88|1|1|9|0|301
chr7_3 exon 79163499 79163741 79163499 ID=Msa1127530-mRNA-1:exon:22287;Parent=Msa1127530-mRNA-1
chr7_3 exon 79164046 79164180 79164046 ID=Msa1127530-mRNA-1:exon:22288;Parent=Msa1127530-mRNA-1
chr7_3 exon 79164270 79164356 79164270 ID=Msa1127530-mRNA-1:exon:22289;Parent=Msa1127530-mRNA-1
chr7_3 exon 79164439 79164529 79164439 ID=Msa1127530-mRNA-1:exon:22290;Parent=Msa1127530-mRNA-1
chr7_3 exon 79164660 79164714 79164660 ID=Msa1127530-mRNA-1:exon:22291;Parent=Msa1127530-mRNA-1
chr7_3 exon 79164947 79165007 79164947 ID=Msa1127530-mRNA-1:exon:22292;Parent=Msa1127530-mRNA-1
chr7_3 exon 79165200 79165421 79165200 ID=Msa1127530-mRNA-1:exon:22293;Parent=Msa1127530-mRNA-1
chr7_3 exon 79165835 79165951 79165835 ID=Msa1127530-mRNA-1:exon:22294;Parent=Msa1127530-mRNA-1
chr7_3 exon 79166454 79166489 79166454 ID=Msa1127530-mRNA-1:exon:22295;Parent=Msa1127530-mRNA-1
chr7_3 five_prime_UTR 79163499 79163639 79163499 ID=Msa1127530-mRNA-1:five_prime_utr;Parent=Msa1127530-mRNA-1
chr7_3 CDS 79163640 79163741 79163640 ID=Msa1127530-mRNA-1:cds;Parent=Msa1127530-mRNA-1
chr7_3 CDS 79164046 79164180 79164046 ID=Msa1127530-mRNA-1:cds;Parent=Msa1127530-mRNA-1
chr7_3 CDS 79164270 79164356 79164270 ID=Msa1127530-mRNA-1:cds;Parent=Msa1127530-mRNA-1
chr7_3 CDS 79164439 79164529 79164439 ID=Msa1127530-mRNA-1:cds;Parent=Msa1127530-mRNA-1
chr7_3 CDS 79164660 79164714 79164660 ID=Msa1127530-mRNA-1:cds;Parent=Msa1127530-mRNA-1
chr7_3 CDS 79164947 79165007 79164947 ID=Msa1127530-mRNA-1:cds;Parent=Msa1127530-mRNA-1
chr7_3 CDS 79165200 79165421 79165200 ID=Msa1127530-mRNA-1:cds;Parent=Msa1127530-mRNA-1
chr7_3 CDS 79165835 79165951 79165835 ID=Msa1127530-mRNA-1:cds;Parent=Msa1127530-mRNA-1
chr7_3 CDS 79166454 79166489 79166454 ID=Msa1127530-mRNA-1:cds;Parent=Msa1127530-mRNA-1
Gene Sequence

>Msa1127530

ATGGCAAGATTGGTGGCACTCCAACAGAGTCAACTATCTTTCCCTCCTTTAGCTTCTTCTCTTTCTGATTTCAATGGAGCAAGACTTCAAACTCAAATTCAGTTGAAAAGAAAAACATGGCAACCAAAAGGGTCTTTAATTGTCTCAGCATCAAGCACCAAGAAAATCCTCATAATGGGAGGTACTAGATTCATCGGTGTGTTTTTGTCTAGGCAACTTGTCAAAGAAGGTCACCAGGTAACTTTATTTACAAGAGGAAAAGCACCTATCACTCAACAATTGCCAGGTGAATCAGACACTGACTTTGCTGATTTTTCTTCCAAGATCTTGCATTTGAAAGGAGACAGGAAGGACTATGATTTTGTAAAATCTAGTCTCTCAGCAGAAGGATTTGATGTTGTTTATGACATTAATGGACGAGAGGCAGAAGAAGTTGAGCCCATATTGGATGCTCTGCCTAATCTGGAACAGTTTATTTACTGCTCTTCTGCTGGCGTCTATCTCAAGTCTGATTTATTACCTCACGCCGAGATTGATGCAGTTGACCCTAAGAGCAGGCACAAGGGAAAGCTTGAAACAGAAAGTTTGTTGCAATCAAAGGATGTTAATTGGACTTCTATAAGGCCAGTTTATATCTATGGACCGTTGAATTACAACCCTGTTGAAGAGTGGTTTTTCCACAGATTGAAAGCCGGTCGCCCAATTCCTATTCCCGGCTCAGGAATACAGATAACACAACTTGGCCATGTTAAGGATTTGGCGACAGCTTTTGTGAAGGTTCTTGGAAATGAAAAGGCCAGCAAGCAGATATTCAACATCTCAGGAGACAAATATGTCACATTTGATGGATTAGCAAAAGCATGTGCTAAGTTATTAAGTGGAGAGCGGTCTCAATTCAGTCCATAA

Protein sequence

>Msa1127530

MARLVALQQSQLSFPPLASSLSDFNGARLQTQIQLKRKTWQPKGSLIVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFVKVLGNEKASKQIFNISGDKYVTFDGLAKACAKLLSGERSQFSP*