AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1420130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420130 MtrunA17_Chr1g0179681 97.890 237 4 1 1 236 21 257 2.24e-172 474
Msa1420130 MtrunA17_Chr3g0144211 39.888 178 79 4 69 222 52 225 6.98e-29 108
Msa1420130 MtrunA17_Chr5g0396231 34.965 143 79 5 86 223 367 500 3.34e-17 80.1
Msa1420130 MtrunA17_Chr4g0052911 40.000 125 54 5 110 221 122 238 2.41e-15 72.8
Msa1420130 MtrunA17_Chr4g0014351 35.484 124 66 5 104 222 754 868 8.63e-15 73.2
Msa1420130 MtrunA17_Chr8g0377771 39.474 114 58 5 111 221 37 142 2.80e-14 71.6
Msa1420130 MtrunA17_Chr8g0392891 25.346 217 129 6 35 226 47 255 9.52e-14 68.6
Msa1420130 MtrunA17_Chr1g0179231 37.607 117 64 4 100 210 65 178 1.21e-13 67.8
Msa1420130 MtrunA17_Chr8g0339141 41.053 95 46 4 129 221 58 144 2.89e-13 68.6
Msa1420130 MtrunA17_Chr7g0234801 37.895 95 49 4 129 221 52 138 1.36e-12 66.6
Msa1420130 MtrunA17_Chr8g0382711 35.075 134 66 5 102 222 81 206 1.70e-11 61.6
Msa1420130 MtrunA17_Chr4g0033841 37.815 119 58 5 108 219 109 218 6.96e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420130 AT3G10060.1 69.469 226 65 2 11 236 9 230 1.88e-107 309
Msa1420130 AT1G20810.1 32.159 227 121 5 28 226 8 229 3.97e-27 104
Msa1420130 AT1G20810.2 29.075 227 125 6 28 227 8 225 4.27e-20 85.9
Msa1420130 AT5G05420.1 38.017 121 54 3 111 223 36 143 4.97e-17 75.5
Msa1420130 AT4G25340.1 35.172 145 80 5 84 223 342 477 1.90e-16 78.2
Msa1420130 AT3G12340.3 39.344 122 60 5 107 223 266 378 1.85e-15 75.1
Msa1420130 AT3G12340.2 39.344 122 60 5 107 223 266 378 1.85e-15 75.1
Msa1420130 AT3G12340.1 39.344 122 60 5 107 223 387 499 2.25e-15 75.1
Msa1420130 AT5G45680.1 38.235 136 63 5 99 221 79 206 2.86e-15 72.4
Msa1420130 AT5G48570.1 41.053 95 46 4 129 221 65 151 2.45e-14 72.0
Msa1420130 AT3G25230.1 38.462 117 61 5 107 220 34 142 8.17e-14 70.5
Msa1420130 AT3G25230.2 38.462 117 61 5 107 220 34 142 1.00e-13 70.5
Msa1420130 AT4G19830.1 32.743 113 67 4 104 210 78 187 5.59e-13 66.6
Msa1420130 AT1G18170.1 28.846 156 103 3 79 226 91 246 3.46e-12 64.7

Find 150 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATCACTTTCAGGAATTT+TGG 0.132496 tig0024758:+29048 None:intergenic
TTCTTGACCCTCTGCTTTAA+TGG 0.192895 tig0024758:-24630 Msa1420130:three_prime_UTR
TCTGGTAGGGCTGCTCTTCT+AGG 0.222073 tig0024758:+26791 None:intergenic
GCGAGAGGAAATGTCTTAAA+AGG 0.252599 tig0024758:-28079 Msa1420130:CDS
CCCTCTGCTTTAATGGGTTC+GGG 0.271684 tig0024758:-24623 Msa1420130:three_prime_UTR
ACCCTCTGCTTTAATGGGTT+CGG 0.272032 tig0024758:-24624 Msa1420130:three_prime_UTR
TTCACCTCTATTGTTGCATT+TGG 0.284032 tig0024758:+27581 None:intergenic
GTTGAAATACTTTGGTTTCC+TGG 0.284593 tig0024758:-25876 Msa1420130:three_prime_UTR
CCGCTACCGCAGATAATTTC+TGG 0.295757 tig0024758:+26294 None:intergenic
TTGCATTTGGAGGAATTTCT+TGG 0.301411 tig0024758:+27594 None:intergenic
TCTTGACCCTCTGCTTTAAT+GGG 0.310995 tig0024758:-24629 Msa1420130:three_prime_UTR
GGAAGAACTATTGTTACTTC+TGG 0.314777 tig0024758:+26426 None:intergenic
AGATTCACTATGTTGCTAAA+TGG 0.324207 tig0024758:-28406 Msa1420130:CDS
GTAGCTTTCATCAAGCTTGC+AGG 0.327310 tig0024758:-26345 Msa1420130:three_prime_UTR
TGTGTCTTGTCTACAAGGTC+TGG 0.329849 tig0024758:-26004 Msa1420130:three_prime_UTR
AAGAGAGAGTTCCATGATAT+TGG 0.333882 tig0024758:+29992 None:intergenic
TTAGCCTTCAACAATCTTTA+CGG 0.335766 tig0024758:+26865 None:intergenic
AATAGCTCCCATAACCTTCA+TGG 0.340612 tig0024758:-24948 Msa1420130:three_prime_UTR
CTGGCACTCTGCTCACTTTG+TGG 0.344207 tig0024758:+26313 None:intergenic
AGGAAATGTCTTAAAAGGTT+TGG 0.350382 tig0024758:-28074 Msa1420130:CDS
GAAGTTACTTGTGAAGAGAT+TGG 0.350766 tig0024758:+29923 None:intergenic
GCCATCAAACAAAGTCCATT+TGG 0.355516 tig0024758:-26975 Msa1420130:CDS
CCCAAATGGACTTTGTTTGA+TGG 0.357206 tig0024758:+26974 None:intergenic
TCATCACCATGAAACAGTTC+TGG 0.358787 tig0024758:-24689 Msa1420130:three_prime_UTR
TTATACCCTTGTACAACCTT+TGG 0.359525 tig0024758:-25965 Msa1420130:three_prime_UTR
AGAGCAGCAGAGACGAATTC+AGG 0.361317 tig0024758:+24874 Msa1420120:CDS
TGTATTCAATATTCCAATAC+AGG 0.366037 tig0024758:-26673 Msa1420130:three_prime_UTR
TATTTCAACCGTGTTCATAC+TGG 0.366794 tig0024758:+25890 Msa1420120:CDS
CTCTGGTGCAGAAGTAAATC+TGG 0.379600 tig0024758:+24994 Msa1420120:CDS
GATGAAAGCCATGAAGGTTA+TGG 0.391406 tig0024758:+24940 Msa1420120:CDS
TCTATGTCTTTACAAATTGA+AGG 0.394425 tig0024758:-29714 Msa1420130:CDS
ACCTCTATTGTTGCATTTGG+AGG 0.402774 tig0024758:+27584 None:intergenic
CTGCTTCCATAGGCAAGTTC+AGG 0.404957 tig0024758:+27623 None:intergenic
TCCGCATTGTAAACAAAGAA+TGG 0.405433 tig0024758:+26194 Msa1420120:CDS
GAGCTTGTGTCTTGTCTACA+AGG 0.410873 tig0024758:-26009 Msa1420130:three_prime_UTR
CCATCAAACAAAGTCCATTT+GGG 0.414715 tig0024758:-26974 Msa1420130:intron
TTATTTGTCAGTCTAGAAAC+AGG 0.415964 tig0024758:+26726 None:intergenic
ATTTGTAAAGACATAGAGAT+TGG 0.416565 tig0024758:+29720 None:intergenic
TGCAAAGGCATCTCCTGTAT+TGG 0.427301 tig0024758:+26660 None:intergenic
TACCCTTGTACAACCTTTGG+AGG 0.431571 tig0024758:-25962 Msa1420130:three_prime_UTR
GAAACCATTACTTACCCAAA+TGG 0.439957 tig0024758:+26960 None:intergenic
ATGAAACAGTTCTGGTGAAA+AGG 0.440946 tig0024758:-24681 Msa1420130:three_prime_UTR
AAATGTTGGCGCAGGTCTAT+TGG 0.444124 tig0024758:+25834 Msa1420120:intron
AGTAGAGCTCTGTCCTCTTC+AGG 0.445180 tig0024758:-24731 Msa1420130:three_prime_UTR
TTGGACTCCCCTGCTTCCAT+AGG 0.448381 tig0024758:+27613 None:intergenic
GTCTTAAAAGGTTTGGATGT+AGG 0.449657 tig0024758:-28067 Msa1420130:CDS
AGACAAGGAATGGGTGTTGG+AGG 0.450682 tig0024758:-28359 Msa1420130:CDS
TGAAGAGGACAGAGCTCTAC+TGG 0.451227 tig0024758:+24733 Msa1420120:CDS
CTGAACTTGCCTATGGAAGC+AGG 0.452208 tig0024758:-27622 Msa1420130:CDS
TTGAAATACTTTGGTTTCCT+GGG 0.453521 tig0024758:-25875 Msa1420130:three_prime_UTR
TGAACACGGTTGAAATACTT+TGG 0.455750 tig0024758:-25884 Msa1420130:three_prime_UTR
ATGAAAGCCATGAAGGTTAT+GGG 0.457579 tig0024758:+24941 Msa1420120:CDS
GTTCAGGTACTATGATTTGA+AGG 0.462265 tig0024758:-28632 Msa1420130:intron
GTGTCTTGTCTACAAGGTCT+GGG 0.462415 tig0024758:-26003 Msa1420130:three_prime_UTR
CCGCATTGTAAACAAAGAAT+GGG 0.467266 tig0024758:+26195 Msa1420120:CDS
TGGGAATATTCTCACAAGAA+AGG 0.469421 tig0024758:+26214 Msa1420120:CDS
CATGACTAGTAGACAAGGAA+TGG 0.471106 tig0024758:-28369 Msa1420130:CDS
TATACTTACTTGAGACCATT+GGG 0.478333 tig0024758:+29016 None:intergenic
GGAGTAGAGGGCATGCGAGT+TGG 0.478765 tig0024758:-28046 Msa1420130:CDS
ATATACTTACTTGAGACCAT+TGG 0.481885 tig0024758:+29015 None:intergenic
GTAGAGGGCATGCGAGTTGG+AGG 0.484472 tig0024758:-28043 Msa1420130:CDS
ATTGGTGGCATGACAAATAC+AGG 0.484625 tig0024758:+25852 Msa1420120:CDS
GTTATGGGAGCTATTGAAGA+AGG 0.486560 tig0024758:+24956 Msa1420120:CDS
TCCTCCAAATGCAACAATAG+AGG 0.487414 tig0024758:-27585 Msa1420130:intron
AGGTACTATGATTTGAAGGT+TGG 0.487515 tig0024758:-28628 Msa1420130:CDS
CAAAGAACAGTCCAATATCA+TGG 0.487891 tig0024758:-30003 Msa1420130:exon
GTTCCTCCTGAACTTGCCTA+TGG 0.490441 tig0024758:-27629 Msa1420130:CDS
AAATTATCTTCAGATGGAGC+AGG 0.490796 tig0024758:-24914 Msa1420130:three_prime_UTR
CTGGTAGGGCTGCTCTTCTA+GGG 0.498958 tig0024758:+26792 None:intergenic
ATCTCAAAATTATCTTCAGA+TGG 0.502531 tig0024758:-24920 Msa1420130:three_prime_UTR
CCTTGTACAACCTTTGGAGG+TGG 0.503514 tig0024758:-25959 Msa1420130:three_prime_UTR
CCACCTCCAAAGGTTGTACA+AGG 0.506231 tig0024758:+25959 Msa1420120:CDS
GAAGAAGTAGAAGATGAGGC+TGG 0.507844 tig0024758:+24656 Msa1420120:CDS
TCCTTCTCAATAGTGTAAGT+TGG 0.508185 tig0024758:-26031 Msa1420130:three_prime_UTR
GGTTTGGATGTAGGAGTAGA+GGG 0.508312 tig0024758:-28058 Msa1420130:CDS
AGGTGAAGAAGTAGAAGATG+AGG 0.510258 tig0024758:+24652 Msa1420120:CDS
GGGCATGCGAGTTGGAGGCC+AGG 0.512087 tig0024758:-28038 Msa1420130:intron
CAGCCCTACGGATTTGATGT+AGG 0.512577 tig0024758:-28109 Msa1420130:CDS
TGGATGTGAGAGTGCAATGA+AGG 0.512937 tig0024758:+29943 None:intergenic
CCAGAAATTATCTGCGGTAG+CGG 0.525395 tig0024758:-26294 Msa1420130:three_prime_UTR
GGCATGACAAATACAGGCCC+AGG 0.525776 tig0024758:+25858 Msa1420120:CDS
GATTTCAAAACTTTGCCCAA+TGG 0.533176 tig0024758:-29031 Msa1420130:CDS
TGTTCTACACATGTTCATGA+TGG 0.533182 tig0024758:-26518 Msa1420130:three_prime_UTR
CAAGGAATGGGTGTTGGAGG+AGG 0.537182 tig0024758:-28356 Msa1420130:CDS
CACTATGTTGCTAAATGGAG+GGG 0.538954 tig0024758:-28401 Msa1420130:CDS
CTTAAATGATTGCAGCCCTA+CGG 0.540595 tig0024758:-28121 Msa1420130:intron
TGACATGAAATTCAAGTTGG+AGG 0.541260 tig0024758:+26475 None:intergenic
AGAAGTAAATCTGGATTCAC+AGG 0.541558 tig0024758:+25003 Msa1420120:CDS
GCTACAAGACTACCACTTTG+CGG 0.544029 tig0024758:+26363 None:intergenic
ATTGTTGAAGGCTAATGCAA+TGG 0.545273 tig0024758:-26857 Msa1420130:exon
GAGAAAGAGAATATAGAGAG+AGG 0.547680 tig0024758:+30099 None:intergenic
CTTCGTATGGTGGCCCTGCA+TGG 0.548737 tig0024758:-26087 Msa1420130:three_prime_UTR
ACTGCCGTAAAGATTGTTGA+AGG 0.549452 tig0024758:-26869 Msa1420130:CDS
AGGTTTGGATGTAGGAGTAG+AGG 0.549659 tig0024758:-28059 Msa1420130:CDS
GGAGTGAAGGATGGTGATGA+TGG 0.550644 tig0024758:+29964 None:intergenic
TTCACTATGTTGCTAAATGG+AGG 0.551720 tig0024758:-28403 Msa1420130:CDS
ATGACTAGTAGACAAGGAAT+GGG 0.556838 tig0024758:-28368 Msa1420130:CDS
TGTCTTTACAAATTGAAGGA+AGG 0.560268 tig0024758:-29710 Msa1420130:CDS
TGCAATGAAGGAGTGAAGGA+TGG 0.565510 tig0024758:+29955 None:intergenic
TCCTTGTCTACTAGTCATGA+AGG 0.569260 tig0024758:+28373 None:intergenic
GAACTAAGAGCCATCTGGTA+GGG 0.572462 tig0024758:+26778 None:intergenic
AGTAGACAAGGAATGGGTGT+TGG 0.572841 tig0024758:-28362 Msa1420130:CDS
TGAACTTGCCTATGGAAGCA+GGG 0.574012 tig0024758:-27621 Msa1420130:CDS
TCACTATGTTGCTAAATGGA+GGG 0.574035 tig0024758:-28402 Msa1420130:CDS
ATATGACATGAAATTCAAGT+TGG 0.577879 tig0024758:+26472 None:intergenic
ATTAAAGCAGAGGGTCAAGA+AGG 0.580470 tig0024758:+24632 Msa1420120:CDS
AGACTTACAATGTCTTCGTA+TGG 0.580822 tig0024758:-26100 Msa1420130:intron
ATTGAGAAGGATGGCAGCAA+TGG 0.582219 tig0024758:+26043 Msa1420120:CDS
GAAATTATCTGCGGTAGCGG+TGG 0.585724 tig0024758:-26291 Msa1420130:three_prime_UTR
AGAGTGCAATGAAGGAGTGA+AGG 0.585916 tig0024758:+29951 None:intergenic
TATGATTTGAAGGTTGGCGA+TGG 0.588743 tig0024758:-28622 Msa1420130:CDS
CCCGAACCCATTAAAGCAGA+GGG 0.588808 tig0024758:+24623 Msa1420120:CDS
CCCATTCTTTGTTTACAATG+CGG 0.589870 tig0024758:-26195 Msa1420130:three_prime_UTR
AGAGTGAACTAAGAGCCATC+TGG 0.593609 tig0024758:+26773 None:intergenic
TCCCGAACCCATTAAAGCAG+AGG 0.593821 tig0024758:+24622 Msa1420120:CDS
TGCATCATAAGATTCCATGC+AGG 0.594356 tig0024758:+26073 Msa1420120:CDS
AATGGGTGTTGGAGGAGGAA+CGG 0.601229 tig0024758:-28351 Msa1420130:intron
GCATCATAAGATTCCATGCA+GGG 0.604220 tig0024758:+26074 Msa1420120:CDS
TGTTGGCGCAGGTCTATTGG+TGG 0.605871 tig0024758:+25837 Msa1420120:intron
CTTCCATAGGCAAGTTCAGG+AGG 0.606900 tig0024758:+27626 None:intergenic
CTTACAATGTCTTCGTATGG+TGG 0.608002 tig0024758:-26097 Msa1420130:intron
ACTTACACTATTGAGAAGGA+TGG 0.610559 tig0024758:+26034 Msa1420120:CDS
GTTTCATGGTGATGAAAATG+AGG 0.610771 tig0024758:+24697 Msa1420120:CDS
AGAAGAGCAGCCCTACCAGA+TGG 0.611921 tig0024758:-26788 Msa1420130:three_prime_UTR
TTCGCCTACATCAAATCCGT+AGG 0.612715 tig0024758:+28105 None:intergenic
TCATGACAATCCACCTCCAA+AGG 0.613499 tig0024758:+25949 Msa1420120:CDS
GAGACGAATTCAGGAAGCAA+TGG 0.614187 tig0024758:+24883 Msa1420120:CDS
AAGAAGTAGAAGATGAGGCT+GGG 0.617278 tig0024758:+24657 Msa1420120:CDS
TCCAACTTACACTATTGAGA+AGG 0.618655 tig0024758:+26030 Msa1420120:CDS
TGAACTAAGAGCCATCTGGT+AGG 0.620922 tig0024758:+26777 None:intergenic
ATACAGGAGATGCCTTTGCA+AGG 0.629002 tig0024758:-26657 Msa1420130:three_prime_UTR
GAACTTGCCTATGGAAGCAG+GGG 0.631222 tig0024758:-27620 Msa1420130:CDS
ATTCAAGTTGGAGGAATCAG+TGG 0.635146 tig0024758:+26484 None:intergenic
CTAGCAGCACCTCCGCAAAG+TGG 0.637732 tig0024758:-26375 Msa1420130:three_prime_UTR
TCGCCTACATCAAATCCGTA+GGG 0.638693 tig0024758:+28106 None:intergenic
TGGAGTTTATGCATGTGATG+TGG 0.642215 tig0024758:-29544 Msa1420130:CDS
GATGGAGCTGAAGCTGTGAA+AGG 0.645046 tig0024758:-28604 Msa1420130:CDS
GAAGAATGTGAACAGCTGCA+TGG 0.646127 tig0024758:+29765 None:intergenic
ACCTTCATGACTAGTAGACA+AGG 0.648553 tig0024758:-28374 Msa1420130:CDS
TAACTAACTAACATGTTGTG+AGG 0.649034 tig0024758:+29667 None:intergenic
GGAAGCTATTGATCCTGAAG+AGG 0.658125 tig0024758:+24718 Msa1420120:CDS
TTTAAGTGCACATTTGAACG+TGG 0.660103 tig0024758:+26238 Msa1420120:CDS
CAAGTTGGAGGAATCAGTGG+TGG 0.660922 tig0024758:+26487 None:intergenic
GTAGGGCTGCTCTTCTAGGG+CGG 0.669196 tig0024758:+26795 None:intergenic
GTGTTCATACTGGATATGAG+TGG 0.672306 tig0024758:+25900 Msa1420120:CDS
GATGTAGGCGAATCTGCGAG+AGG 0.684048 tig0024758:-28094 Msa1420130:CDS
CACCTCCAAAGGTTGTACAA+GGG 0.704703 tig0024758:+25960 Msa1420120:CDS
ACAAGACTACCACTTTGCGG+AGG 0.711544 tig0024758:+26366 None:intergenic
ACTCATATCCAGTATGAACA+CGG 0.712518 tig0024758:-25898 Msa1420130:three_prime_UTR
AGAGTGCCAGAAATTATCTG+CGG 0.744813 tig0024758:-26300 Msa1420130:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTATTTTTCTTTAGTT+TGG + tig0024758:24645-24664 Msa1420120:CDS 10.0%
!!! TTTTTTATTTATTTATGATG+TGG + tig0024758:25225-25244 Msa1420120:intron 10.0%
!!! AATTTAACAACATTTTAAAT+GGG + tig0024758:25535-25554 Msa1420120:intron 10.0%
!!! AAATTTAACAACATTTTAAA+TGG + tig0024758:25536-25555 Msa1420120:intron 10.0%
!! ATTAATATATTCAATTTATG+TGG + tig0024758:27227-27246 None:intergenic 10.0%
!!! TTTAATTGTTTATATTTTTG+TGG + tig0024758:28099-28118 None:intergenic 10.0%
!!! TGATATATATTGTTATTTTA+GGG + tig0024758:28952-28971 None:intergenic 10.0%
!!! ATGATATATATTGTTATTTT+AGG + tig0024758:28953-28972 None:intergenic 10.0%
!! TTTACAACAAAAATTCAAAT+AGG - tig0024758:24912-24931 Msa1420130:three_prime_UTR 15.0%
!!! ATGTTATTTGAATATCAATT+TGG - tig0024758:25276-25295 Msa1420130:intron 15.0%
!!! TGTTATTTGAATATCAATTT+GGG - tig0024758:25277-25296 Msa1420130:intron 15.0%
!! ATTTGATTAACAGATATAAT+AGG - tig0024758:25372-25391 Msa1420130:intron 15.0%
!!! ATAGTTTCTTTTAAGATATT+TGG + tig0024758:28304-28323 None:intergenic 15.0%
!! AATACATGAAATAAGTAATT+TGG - tig0024758:28545-28564 Msa1420130:intron 15.0%
!!! ATTTTGGAATACTATTATAA+AGG + tig0024758:29075-29094 None:intergenic 15.0%
!! CTTAGAATTATAAGATTCTT+AGG - tig0024758:25103-25122 Msa1420130:intron 20.0%
!!! ACTTTATTAACGACAATTTT+AGG + tig0024758:25436-25455 Msa1420120:intron 20.0%
!! AAATTGTCGTTAATAAAGTT+CGG - tig0024758:25437-25456 Msa1420130:intron 20.0%
!!! AATTATGCTTTTCTTGTTTT+TGG - tig0024758:25615-25634 Msa1420130:intron 20.0%
!!! GTATCATCATATCTATTTTA+AGG + tig0024758:25840-25859 Msa1420120:intron 20.0%
!! TAAAATAGATATGATGATAC+AGG - tig0024758:25840-25859 Msa1420130:intron 20.0%
!! CTTAAAATAAATGTACTTCT+AGG + tig0024758:25876-25895 Msa1420120:CDS 20.0%
!! TAAGATATATAAAGCTAGTT+AGG - tig0024758:26024-26043 Msa1420130:three_prime_UTR 20.0%
!! AAGATATATAAAGCTAGTTA+GGG - tig0024758:26025-26044 Msa1420130:three_prime_UTR 20.0%
!! AACTCATAACAATCAATTAA+AGG + tig0024758:26415-26434 None:intergenic 20.0%
!!! TTTATGCAAAATTTTCTTGT+TGG - tig0024758:26545-26564 Msa1420130:three_prime_UTR 20.0%
!!! TTATGCAAAATTTTCTTGTT+GGG - tig0024758:26546-26565 Msa1420130:three_prime_UTR 20.0%
!! AAATCATGAATATCAGTAAA+TGG - tig0024758:26746-26765 Msa1420130:three_prime_UTR 20.0%
!!! TGTAAATTTTGCATCTTTAA+AGG + tig0024758:26920-26939 None:intergenic 20.0%
!! TTAAAGATGCAAAATTTACA+AGG - tig0024758:26920-26939 Msa1420130:intron 20.0%
!! TATATGTAGTATCAAATTAC+AGG + tig0024758:27158-27177 None:intergenic 20.0%
!!! AGAATGATTATTTCTTTTGA+TGG + tig0024758:27466-27485 None:intergenic 20.0%
!! ATCCATAATCAATAAATGTA+GGG + tig0024758:27603-27622 None:intergenic 20.0%
!!! GTAGTTAATTTCAATGATTT+TGG - tig0024758:27804-27823 Msa1420130:intron 20.0%
!!! AAAACTTTCAGATTTTAAGT+CGG - tig0024758:29036-29055 Msa1420130:CDS 20.0%
!! GTTCAGAAAAAAAATTAGTT+AGG + tig0024758:29114-29133 None:intergenic 20.0%
!! TAACATTAAAACTAGAATCA+TGG - tig0024758:29615-29634 Msa1420130:intron 20.0%
! ATTTGTAAAGACATAGAGAT+TGG + tig0024758:24989-25008 Msa1420120:CDS 25.0%
! TCTATGTCTTTACAAATTGA+AGG - tig0024758:24992-25011 Msa1420130:three_prime_UTR 25.0%
!! TTTAAAATGTTGTCGTAGTT+AGG + tig0024758:25312-25331 Msa1420120:intron 25.0%
!! CTACGACAACATTTTAAATA+TGG - tig0024758:25314-25333 Msa1420130:intron 25.0%
!!! AAAGTTTTGAAATCACTTTC+AGG + tig0024758:25669-25688 Msa1420120:intron 25.0%
! TATTCATTAGTCATTTGAGT+CGG + tig0024758:25780-25799 Msa1420120:intron 25.0%
! ACTAATGAAACTAAAGTCAT+AGG + tig0024758:25927-25946 Msa1420120:CDS 25.0%
! AACATAGTGAATCTACAATA+TGG + tig0024758:26294-26313 None:intergenic 25.0%
! ATTGATTGTTATGAGTTAAC+AGG - tig0024758:26418-26437 Msa1420130:three_prime_UTR 25.0%
!! TATGCAAAATTTTCTTGTTG+GGG - tig0024758:26547-26566 Msa1420130:three_prime_UTR 25.0%
! ATGAAATTTGTAACAGAACA+AGG + tig0024758:26724-26743 None:intergenic 25.0%
! AATGAACAACTACATTGAAT+TGG - tig0024758:26788-26807 Msa1420130:three_prime_UTR 25.0%
!! TCTTTTTAGATATCTAGAGA+CGG + tig0024758:27432-27451 None:intergenic 25.0%
!!! AAAATTAGTTCTTTTTCTGC+CGG - tig0024758:27536-27555 Msa1420130:intron 25.0%
! TCCATAATCAATAAATGTAG+GGG + tig0024758:27602-27621 None:intergenic 25.0%
! GATCCATAATCAATAAATGT+AGG + tig0024758:27604-27623 None:intergenic 25.0%
! AGTATATAAGATGCAGAATT+AGG + tig0024758:27629-27648 None:intergenic 25.0%
!! ATTTTCACCTTTGTAACTTT+CGG - tig0024758:27683-27702 Msa1420130:intron 25.0%
! TGTATTCAATATTCCAATAC+AGG - tig0024758:28033-28052 Msa1420130:intron 25.0%
! ATATGACATGAAATTCAAGT+TGG + tig0024758:28237-28256 None:intergenic 25.0%
! ACTTATTTCATGTATTTGAC+AGG + tig0024758:28541-28560 None:intergenic 25.0%
! CTTATGTAAGTGATAAATGT+TGG + tig0024758:28889-28908 None:intergenic 25.0%
! AATACTATTATAAAGGAGGT+GGG + tig0024758:29068-29087 None:intergenic 25.0%
! TTGGAATACTATTATAAAGG+AGG + tig0024758:29072-29091 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - tig0024758:29318-29337 Msa1420130:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG - tig0024758:29460-29479 Msa1420130:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG + tig0024758:29500-29519 None:intergenic 25.0%
!! ATTTTCACACTTGGTAAAAT+GGG + tig0024758:29660-29679 None:intergenic 25.0%
!! ATTTGTATGATTTTCACACT+TGG + tig0024758:29669-29688 None:intergenic 25.0%
! ATCTCAAAATTATCTTCAGA+TGG - tig0024758:29786-29805 Msa1420130:CDS 25.0%
! TGAGTTTGTGTTAAGTATAT+AGG + tig0024758:29913-29932 None:intergenic 25.0%
!!! TTCTACAACAGTTTTATTGG+AGG + tig0024758:24966-24985 Msa1420120:CDS 30.0%
!! TGGTTCTACAACAGTTTTAT+TGG + tig0024758:24969-24988 Msa1420120:CDS 30.0%
TGTCTTTACAAATTGAAGGA+AGG - tig0024758:24996-25015 Msa1420130:three_prime_UTR 30.0%
TAACTAACTAACATGTTGTG+AGG + tig0024758:25042-25061 Msa1420120:intron 30.0%
! TATTTTATGTGATCAGTTGC+TGG - tig0024758:25142-25161 Msa1420130:intron 30.0%
! GAAATCACTTTCAGGAATTT+TGG + tig0024758:25661-25680 Msa1420120:intron 30.0%
TATACTTACTTGAGACCATT+GGG + tig0024758:25693-25712 Msa1420120:intron 30.0%
ATATACTTACTTGAGACCAT+TGG + tig0024758:25694-25713 Msa1420120:intron 30.0%
!! TAGTACACTAGTCTTTAGTT+AGG - tig0024758:25943-25962 Msa1420130:three_prime_UTR 30.0%
!! AGTACACTAGTCTTTAGTTA+GGG - tig0024758:25944-25963 Msa1420130:three_prime_UTR 30.0%
TGTAATCTTGAAACTTTCAC+CGG - tig0024758:25978-25997 Msa1420130:three_prime_UTR 30.0%
ATGAAATCAACTAGAAAAGC+CGG + tig0024758:26000-26019 Msa1420120:CDS 30.0%
AAATATGTTTCGCTCATTAG+TGG - tig0024758:26157-26176 Msa1420130:intron 30.0%
AGATTCACTATGTTGCTAAA+TGG - tig0024758:26300-26319 Msa1420130:three_prime_UTR 30.0%
CACAATGTATAAATCTTCTG+AGG - tig0024758:26515-26534 Msa1420130:three_prime_UTR 30.0%
AGGAAATGTCTTAAAAGGTT+TGG - tig0024758:26632-26651 Msa1420130:three_prime_UTR 30.0%
TGCAAAATTTACAAGGAAGT+TGG - tig0024758:26927-26946 Msa1420130:intron 30.0%
GCAAAATTTACAAGGAAGTT+GGG - tig0024758:26928-26947 Msa1420130:intron 30.0%
TTGATCAATTAGAGTTGTTG+TGG + tig0024758:27287-27306 None:intergenic 30.0%
CTCTAATTGATCAAATTCCT+TGG - tig0024758:27293-27312 Msa1420130:intron 30.0%
! TCCCCTACATTTATTGATTA+TGG - tig0024758:27598-27617 Msa1420130:CDS 30.0%
! TTAGCCTTCAACAATCTTTA+CGG + tig0024758:27844-27863 None:intergenic 30.0%
TTATTTGTCAGTCTAGAAAC+AGG + tig0024758:27983-28002 None:intergenic 30.0%
TTGCTTGGAAAAAATTGACT+TGG + tig0024758:28151-28170 None:intergenic 30.0%
TGTAAGTCTATTGTTCATGA+TGG + tig0024758:28595-28614 None:intergenic 30.0%
! TTGAAATACTTTGGTTTCCT+GGG - tig0024758:28831-28850 Msa1420130:intron 30.0%
ATACTATTATAAAGGAGGTG+GGG + tig0024758:29067-29086 None:intergenic 30.0%
GAATACTATTATAAAGGAGG+TGG + tig0024758:29069-29088 None:intergenic 30.0%
! AGTACAAAGTTCAGAGATTT+TGG + tig0024758:29091-29110 None:intergenic 30.0%
! TATTTTCCATGTAGTATGAC+CGG - tig0024758:29138-29157 Msa1420130:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG + tig0024758:29314-29333 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG + tig0024758:29384-29403 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - tig0024758:29385-29404 Msa1420130:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG + tig0024758:29453-29472 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + tig0024758:29465-29484 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG - tig0024758:29504-29523 Msa1420130:intron 30.0%
! GATTTTCACACTTGGTAAAA+TGG + tig0024758:29661-29680 None:intergenic 30.0%
! GAAGAAGGAGATGTAATTTT+TGG + tig0024758:29738-29757 None:intergenic 30.0%
GAGAAAGAGAATATAGAGAG+AGG + tig0024758:24610-24629 Msa1420120:CDS 35.0%
CAAAGAACAGTCCAATATCA+TGG - tig0024758:24703-24722 Msa1420130:three_prime_UTR 35.0%
AAGAGAGAGTTCCATGATAT+TGG + tig0024758:24717-24736 Msa1420120:CDS 35.0%
GAAGTTACTTGTGAAGAGAT+TGG + tig0024758:24786-24805 Msa1420120:intron 35.0%
CTGAATTGTCTTAACAACAC+AGG - tig0024758:24875-24894 Msa1420130:three_prime_UTR 35.0%
! TTGAATATCAATTTGGGACG+CGG - tig0024758:25283-25302 Msa1420130:intron 35.0%
CGTTAATAAAGTTCGGTTGA+CGG - tig0024758:25444-25463 Msa1420130:intron 35.0%
GATTTCAAAACTTTGCCCAA+TGG - tig0024758:25675-25694 Msa1420130:intron 35.0%
! GAATTTTCTACCGTCTACTT+TGG - tig0024758:25751-25770 Msa1420130:intron 35.0%
GACAAAACTCTGATATGTTC+AGG - tig0024758:26058-26077 Msa1420130:three_prime_UTR 35.0%
GTTCAGGTACTATGATTTGA+AGG - tig0024758:26074-26093 Msa1420130:three_prime_UTR 35.0%
AGGTACTATGATTTGAAGGT+TGG - tig0024758:26078-26097 Msa1420130:three_prime_UTR 35.0%
TTCACTATGTTGCTAAATGG+AGG - tig0024758:26303-26322 Msa1420130:three_prime_UTR 35.0%
TCACTATGTTGCTAAATGGA+GGG - tig0024758:26304-26323 Msa1420130:three_prime_UTR 35.0%
ATGACTAGTAGACAAGGAAT+GGG - tig0024758:26338-26357 Msa1420130:three_prime_UTR 35.0%
!! TAGATTTTAGCCGAGTTACT+TGG + tig0024758:26387-26406 None:intergenic 35.0%
GGTTCTTCCATGTATAAACA+AGG - tig0024758:26439-26458 Msa1420130:three_prime_UTR 35.0%
!! GAACATGCCTTGTTTATACA+TGG + tig0024758:26449-26468 None:intergenic 35.0%
GTCTTAAAAGGTTTGGATGT+AGG - tig0024758:26639-26658 Msa1420130:three_prime_UTR 35.0%
AGTCCCTAGACAGTTAAATT+TGG - tig0024758:26893-26912 Msa1420130:intron 35.0%
GGTCCAAATTTAACTGTCTA+GGG + tig0024758:26899-26918 None:intergenic 35.0%
AGGTCCAAATTTAACTGTCT+AGG + tig0024758:26900-26919 None:intergenic 35.0%
AAATTTACAAGGAAGTTGGG+AGG - tig0024758:26931-26950 Msa1420130:intron 35.0%
AATTTACAAGGAAGTTGGGA+GGG - tig0024758:26932-26951 Msa1420130:intron 35.0%
! ATTTAGTTGACTTTCTGCAG+CGG - tig0024758:27045-27064 Msa1420130:intron 35.0%
TTGCATTTGGAGGAATTTCT+TGG + tig0024758:27115-27134 None:intergenic 35.0%
TTCACCTCTATTGTTGCATT+TGG + tig0024758:27128-27147 None:intergenic 35.0%
CTTGTGATATGGAGCTAAAA+TGG + tig0024758:27181-27200 None:intergenic 35.0%
ATAGTATGGCTCTTGTGATA+TGG + tig0024758:27192-27211 None:intergenic 35.0%
GGATGCATAAGCATATAGTA+TGG + tig0024758:27206-27225 None:intergenic 35.0%
! TAGAGTTGTTGTGGTGTTAA+TGG + tig0024758:27278-27297 None:intergenic 35.0%
TGGAAATGGTAATTAAGCCA+AGG + tig0024758:27313-27332 None:intergenic 35.0%
CAGTTAAACTGATTGAACCT+TGG + tig0024758:27374-27393 None:intergenic 35.0%
GGTTCAATCAGTTTAACTGA+AGG - tig0024758:27375-27394 Msa1420130:intron 35.0%
CCATCAAACAAAGTCCATTT+GGG - tig0024758:27732-27751 Msa1420130:intron 35.0%
AAGTCCATTTGGGTAAGTAA+TGG - tig0024758:27742-27761 Msa1420130:intron 35.0%
GAAACCATTACTTACCCAAA+TGG + tig0024758:27749-27768 None:intergenic 35.0%
! TCAATGATTTTGGATTCTGC+AGG - tig0024758:27814-27833 Msa1420130:intron 35.0%
ATTGTTGAAGGCTAATGCAA+TGG - tig0024758:27849-27868 Msa1420130:intron 35.0%
!! AACTTTTTGACTCCTTGCAA+AGG + tig0024758:28064-28083 None:intergenic 35.0%
GAGTCAAAAAGTTCATGAGA+CGG - tig0024758:28071-28090 Msa1420130:CDS 35.0%
TGTTCTACACATGTTCATGA+TGG - tig0024758:28188-28207 Msa1420130:intron 35.0%
!! TGACATGAAATTCAAGTTGG+AGG + tig0024758:28234-28253 None:intergenic 35.0%
! GGAAGAACTATTGTTACTTC+TGG + tig0024758:28283-28302 None:intergenic 35.0%
TTTAAGTGCACATTTGAACG+TGG + tig0024758:28471-28490 None:intergenic 35.0%
TGGGAATATTCTCACAAGAA+AGG + tig0024758:28495-28514 None:intergenic 35.0%
CCGCATTGTAAACAAAGAAT+GGG + tig0024758:28514-28533 None:intergenic 35.0%
! CCCATTCTTTGTTTACAATG+CGG - tig0024758:28511-28530 Msa1420130:intron 35.0%
TCCGCATTGTAAACAAAGAA+TGG + tig0024758:28515-28534 None:intergenic 35.0%
AGACTTACAATGTCTTCGTA+TGG - tig0024758:28606-28625 Msa1420130:CDS 35.0%
ACTTACACTATTGAGAAGGA+TGG + tig0024758:28675-28694 None:intergenic 35.0%
TCCTTCTCAATAGTGTAAGT+TGG - tig0024758:28675-28694 Msa1420130:intron 35.0%
TCCAACTTACACTATTGAGA+AGG + tig0024758:28679-28698 None:intergenic 35.0%
TTATACCCTTGTACAACCTT+TGG - tig0024758:28741-28760 Msa1420130:intron 35.0%
ACTCATATCCAGTATGAACA+CGG - tig0024758:28808-28827 Msa1420130:intron 35.0%
TATTTCAACCGTGTTCATAC+TGG + tig0024758:28819-28838 None:intergenic 35.0%
TGAACACGGTTGAAATACTT+TGG - tig0024758:28822-28841 Msa1420130:intron 35.0%
! GTTGAAATACTTTGGTTTCC+TGG - tig0024758:28830-28849 Msa1420130:intron 35.0%
TACTATTATAAAGGAGGTGG+GGG + tig0024758:29066-29085 None:intergenic 35.0%
AGACTAGACAAGATAGGATT+AGG - tig0024758:29257-29276 Msa1420130:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - tig0024758:29307-29326 Msa1420130:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - tig0024758:29327-29346 Msa1420130:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - tig0024758:29332-29351 Msa1420130:intron 35.0%
AAGAAGAGTAGATCAAATGG+CGG - tig0024758:29388-29407 Msa1420130:intron 35.0%
! GTTTCTCGAATGGTTTTCTT+GGG + tig0024758:29443-29462 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG - tig0024758:29472-29491 Msa1420130:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - tig0024758:29484-29503 Msa1420130:intron 35.0%
AGAAGTAAATCTGGATTCAC+AGG + tig0024758:29706-29725 None:intergenic 35.0%
ATGAAAGCCATGAAGGTTAT+GGG + tig0024758:29768-29787 None:intergenic 35.0%
!!! TTTTGAGATGAAAGCCATGA+AGG + tig0024758:29775-29794 None:intergenic 35.0%
AAATTATCTTCAGATGGAGC+AGG - tig0024758:29792-29811 Msa1420130:CDS 35.0%
! GTTTCATGGTGATGAAAATG+AGG + tig0024758:30012-30031 None:intergenic 35.0%
! TTTTCACCAGAACTGTTTCA+TGG + tig0024758:30026-30045 None:intergenic 35.0%
! ATGAAACAGTTCTGGTGAAA+AGG - tig0024758:30025-30044 Msa1420130:five_prime_UTR 35.0%
TGGAGTTTATGCATGTGATG+TGG - tig0024758:25162-25181 Msa1420130:intron 40.0%
!!! TTTGGTTTTCTGCAGCTAAG+AGG - tig0024758:25633-25652 Msa1420130:intron 40.0%
TATGATTTGAAGGTTGGCGA+TGG - tig0024758:26084-26103 Msa1420130:three_prime_UTR 40.0%
CAGACCTGACTCATATAACT+CGG - tig0024758:26197-26216 Msa1420130:three_prime_UTR 40.0%
AACTCCGAGTTATATGAGTC+AGG + tig0024758:26204-26223 Msa1420120:CDS 40.0%
CACTATGTTGCTAAATGGAG+GGG - tig0024758:26305-26324 Msa1420130:three_prime_UTR 40.0%
ACCTTCATGACTAGTAGACA+AGG - tig0024758:26332-26351 Msa1420130:three_prime_UTR 40.0%
TCCTTGTCTACTAGTCATGA+AGG + tig0024758:26336-26355 None:intergenic 40.0%
CATGACTAGTAGACAAGGAA+TGG - tig0024758:26337-26356 Msa1420130:three_prime_UTR 40.0%
CTTAAATGATTGCAGCCCTA+CGG - tig0024758:26585-26604 Msa1420130:three_prime_UTR 40.0%
GCGAGAGGAAATGTCTTAAA+AGG - tig0024758:26627-26646 Msa1420130:three_prime_UTR 40.0%
TCCTCCAAATGCAACAATAG+AGG - tig0024758:27121-27140 Msa1420130:intron 40.0%
ACCTCTATTGTTGCATTTGG+AGG + tig0024758:27125-27144 None:intergenic 40.0%
CGCTAACTCAGAAATGGAAA+TGG + tig0024758:27327-27346 None:intergenic 40.0%
TTTCCATTTCTGAGTTAGCG+AGG - tig0024758:27327-27346 Msa1420130:intron 40.0%
GATATCTAGAGACGGTTAAG+TGG + tig0024758:27424-27443 None:intergenic 40.0%
TGAGTTCAGATGCACATAAC+CGG + tig0024758:27558-27577 None:intergenic 40.0%
ATGTGCATCTGAACTCATGT+TGG - tig0024758:27561-27580 Msa1420130:intron 40.0%
GCCATCAAACAAAGTCCATT+TGG - tig0024758:27731-27750 Msa1420130:intron 40.0%
! CCCAAATGGACTTTGTTTGA+TGG + tig0024758:27735-27754 None:intergenic 40.0%
ACTGCCGTAAAGATTGTTGA+AGG - tig0024758:27837-27856 Msa1420130:intron 40.0%
!!! TGTGAGTCACTGTTTTTGCT+TGG + tig0024758:28166-28185 None:intergenic 40.0%
!! ATTCAAGTTGGAGGAATCAG+TGG + tig0024758:28225-28244 None:intergenic 40.0%
! AGAGTGCCAGAAATTATCTG+CGG - tig0024758:28406-28425 Msa1420130:CDS 40.0%
CTTACAATGTCTTCGTATGG+TGG - tig0024758:28609-28628 Msa1420130:CDS 40.0%
GCATCATAAGATTCCATGCA+GGG + tig0024758:28635-28654 None:intergenic 40.0%
TGCATCATAAGATTCCATGC+AGG + tig0024758:28636-28655 None:intergenic 40.0%
GTGTTCATACTGGATATGAG+TGG + tig0024758:28809-28828 None:intergenic 40.0%
! ATTGGTGGCATGACAAATAC+AGG + tig0024758:28857-28876 None:intergenic 40.0%
TAAGTGATAAATGTTGGCGC+AGG + tig0024758:28883-28902 None:intergenic 40.0%
ACCGGCAATGTTGTATGATA+CGG - tig0024758:29156-29175 Msa1420130:intron 40.0%
TCCGTATCATACAACATTGC+CGG + tig0024758:29160-29179 None:intergenic 40.0%
TGTTGTATGATACGGAGTGT+TGG - tig0024758:29164-29183 Msa1420130:intron 40.0%
! GTTGTATGATACGGAGTGTT+GGG - tig0024758:29165-29184 Msa1420130:intron 40.0%
CACTTACTTTACTCTCGTGT+TGG + tig0024758:29201-29220 None:intergenic 40.0%
CGAGAGTAAAGTAAGTGTAG+CGG - tig0024758:29204-29223 Msa1420130:intron 40.0%
GTGGTAAGACTAGACAAGAT+AGG - tig0024758:29251-29270 Msa1420130:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG + tig0024758:29375-29394 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - tig0024758:29413-29432 Msa1420130:intron 40.0%
! GGTTTCTCGAATGGTTTTCT+TGG + tig0024758:29444-29463 None:intergenic 40.0%
!!! GGAGATGTAATTTTTGGCTC+TGG + tig0024758:29732-29751 None:intergenic 40.0%
GTTATGGGAGCTATTGAAGA+AGG + tig0024758:29753-29772 None:intergenic 40.0%
AATAGCTCCCATAACCTTCA+TGG - tig0024758:29758-29777 Msa1420130:CDS 40.0%
GATGAAAGCCATGAAGGTTA+TGG + tig0024758:29769-29788 None:intergenic 40.0%
TCATCACCATGAAACAGTTC+TGG - tig0024758:30017-30036 Msa1420130:five_prime_UTR 40.0%
AAGAAGTAGAAGATGAGGCT+GGG + tig0024758:30052-30071 None:intergenic 40.0%
AGGTGAAGAAGTAGAAGATG+AGG + tig0024758:30057-30076 None:intergenic 40.0%
ATTAAAGCAGAGGGTCAAGA+AGG + tig0024758:30077-30096 None:intergenic 40.0%
TTCTTGACCCTCTGCTTTAA+TGG - tig0024758:30076-30095 Msa1420130:five_prime_UTR 40.0%
TCTTGACCCTCTGCTTTAAT+GGG - tig0024758:30077-30096 Msa1420130:five_prime_UTR 40.0%
TGCAATGAAGGAGTGAAGGA+TGG + tig0024758:24754-24773 Msa1420120:intron 45.0%
AGAGTGCAATGAAGGAGTGA+AGG + tig0024758:24758-24777 Msa1420120:intron 45.0%
! TGGATGTGAGAGTGCAATGA+AGG + tig0024758:24766-24785 Msa1420120:intron 45.0%
GAAGAATGTGAACAGCTGCA+TGG + tig0024758:24944-24963 Msa1420120:CDS 45.0%
GAGTCGGTTACCAAAGTAGA+CGG + tig0024758:25764-25783 Msa1420120:intron 45.0%
AGTAGACAAGGAATGGGTGT+TGG - tig0024758:26344-26363 Msa1420130:three_prime_UTR 45.0%
ACGGTACGATCCAAGTAACT+CGG - tig0024758:26374-26393 Msa1420130:three_prime_UTR 45.0%
TCGCCTACATCAAATCCGTA+GGG + tig0024758:26603-26622 None:intergenic 45.0%
TTCGCCTACATCAAATCCGT+AGG + tig0024758:26604-26623 None:intergenic 45.0%
AGGTTTGGATGTAGGAGTAG+AGG - tig0024758:26647-26666 Msa1420130:three_prime_UTR 45.0%
GGTTTGGATGTAGGAGTAGA+GGG - tig0024758:26648-26667 Msa1420130:three_prime_UTR 45.0%
! AGGAAGTTGGGAGGGATTTT+AGG - tig0024758:26940-26959 Msa1420130:intron 45.0%
TGAACTTGCCTATGGAAGCA+GGG - tig0024758:27085-27104 Msa1420130:intron 45.0%
TCACCTCGCTAACTCAGAAA+TGG + tig0024758:27333-27352 None:intergenic 45.0%
CGAGGTGAATTTGTCTCCTT+TGG - tig0024758:27345-27364 Msa1420130:intron 45.0%
TTTGTCTCCTTTGGACACCA+AGG - tig0024758:27354-27373 Msa1420130:intron 45.0%
!! GATTGAACCTTGGTGTCCAA+AGG + tig0024758:27364-27383 None:intergenic 45.0%
GAACTCATGTTGGCAGGAAA+AGG - tig0024758:27571-27590 Msa1420130:intron 45.0%
CTGCAGTCCGAAAGTTACAA+AGG + tig0024758:27693-27712 None:intergenic 45.0%
TGTAACTTTCGGACTGCAGA+TGG - tig0024758:27694-27713 Msa1420130:intron 45.0%
GAACTAAGAGCCATCTGGTA+GGG + tig0024758:27931-27950 None:intergenic 45.0%
TGAACTAAGAGCCATCTGGT+AGG + tig0024758:27932-27951 None:intergenic 45.0%
AGAGTGAACTAAGAGCCATC+TGG + tig0024758:27936-27955 None:intergenic 45.0%
!! TGCAAAGGCATCTCCTGTAT+TGG + tig0024758:28049-28068 None:intergenic 45.0%
ATACAGGAGATGCCTTTGCA+AGG - tig0024758:28049-28068 Msa1420130:CDS 45.0%
GCTACAAGACTACCACTTTG+CGG + tig0024758:28346-28365 None:intergenic 45.0%
GTAGCTTTCATCAAGCTTGC+AGG - tig0024758:28361-28380 Msa1420130:CDS 45.0%
CCAGAAATTATCTGCGGTAG+CGG - tig0024758:28412-28431 Msa1420130:intron 45.0%
ATTGAGAAGGATGGCAGCAA+TGG + tig0024758:28666-28685 None:intergenic 45.0%
GAGCTTGTGTCTTGTCTACA+AGG - tig0024758:28697-28716 Msa1420130:intron 45.0%
TGTGTCTTGTCTACAAGGTC+TGG - tig0024758:28702-28721 Msa1420130:intron 45.0%
GTGTCTTGTCTACAAGGTCT+GGG - tig0024758:28703-28722 Msa1420130:intron 45.0%
TACCCTTGTACAACCTTTGG+AGG - tig0024758:28744-28763 Msa1420130:intron 45.0%
CACCTCCAAAGGTTGTACAA+GGG + tig0024758:28749-28768 None:intergenic 45.0%
TCATGACAATCCACCTCCAA+AGG + tig0024758:28760-28779 None:intergenic 45.0%
AAATGTTGGCGCAGGTCTAT+TGG + tig0024758:28875-28894 None:intergenic 45.0%
ACATTGCCGGTCATACTACA+TGG + tig0024758:29147-29166 None:intergenic 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG - tig0024758:29212-29231 Msa1420130:intron 45.0%
AATGACACCATTCGAGAGAG+TGG - tig0024758:29280-29299 Msa1420130:intron 45.0%
ATGACACCATTCGAGAGAGT+GGG - tig0024758:29281-29300 Msa1420130:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG + tig0024758:29374-29393 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + tig0024758:29553-29572 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + tig0024758:29554-29573 None:intergenic 45.0%
CTCTGGTGCAGAAGTAAATC+TGG + tig0024758:29715-29734 None:intergenic 45.0%
GAGACGAATTCAGGAAGCAA+TGG + tig0024758:29826-29845 None:intergenic 45.0%
TTCCTGTGAATGTACCATCG+TGG - tig0024758:29878-29897 Msa1420130:intron 45.0%
! ATAGGCTAACTTGTCCACGA+TGG + tig0024758:29895-29914 None:intergenic 45.0%
GGAAGCTATTGATCCTGAAG+AGG + tig0024758:29991-30010 None:intergenic 45.0%
GAAGAAGTAGAAGATGAGGC+TGG + tig0024758:30053-30072 None:intergenic 45.0%
!! ACCCTCTGCTTTAATGGGTT+CGG - tig0024758:30082-30101 Msa1420130:five_prime_UTR 45.0%
!! AAAAATATAAACAATTAAAA+AGG - tig0024758:28100-28119 Msa1420130:CDS 5.0%
! GGAGTGAAGGATGGTGATGA+TGG + tig0024758:24745-24764 Msa1420120:intron 50.0%
TGGTTAATGCAGTTCACGCG+TGG - tig0024758:25334-25353 Msa1420130:intron 50.0%
GATGGAGCTGAAGCTGTGAA+AGG - tig0024758:26102-26121 Msa1420130:intron 50.0%
!! AGACAAGGAATGGGTGTTGG+AGG - tig0024758:26347-26366 Msa1420130:three_prime_UTR 50.0%
!! AATGGGTGTTGGAGGAGGAA+CGG - tig0024758:26355-26374 Msa1420130:three_prime_UTR 50.0%
CAGCCCTACGGATTTGATGT+AGG - tig0024758:26597-26616 Msa1420130:three_prime_UTR 50.0%
TGCTAGAGTCACTTCTCACC+TGG + tig0024758:26689-26708 None:intergenic 50.0%
GTTCCTCCTGAACTTGCCTA+TGG - tig0024758:27077-27096 Msa1420130:intron 50.0%
CTTCCATAGGCAAGTTCAGG+AGG + tig0024758:27083-27102 None:intergenic 50.0%
CTGCTTCCATAGGCAAGTTC+AGG + tig0024758:27086-27105 None:intergenic 50.0%
CTGAACTTGCCTATGGAAGC+AGG - tig0024758:27084-27103 Msa1420130:intron 50.0%
GAACTTGCCTATGGAAGCAG+GGG - tig0024758:27086-27105 Msa1420130:intron 50.0%
GCATCTGAACTCATGTTGGC+AGG - tig0024758:27565-27584 Msa1420130:intron 50.0%
! CAAGTTGGAGGAATCAGTGG+TGG + tig0024758:28222-28241 None:intergenic 50.0%
ACAAGACTACCACTTTGCGG+AGG + tig0024758:28343-28362 None:intergenic 50.0%
CCGCTACCGCAGATAATTTC+TGG + tig0024758:28415-28434 None:intergenic 50.0%
! GAAATTATCTGCGGTAGCGG+TGG - tig0024758:28415-28434 Msa1420130:intron 50.0%
CCACCTCCAAAGGTTGTACA+AGG + tig0024758:28750-28769 None:intergenic 50.0%
! CCTTGTACAACCTTTGGAGG+TGG - tig0024758:28747-28766 Msa1420130:intron 50.0%
!! GTATGATACGGAGTGTTGGG+CGG - tig0024758:29168-29187 Msa1420130:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG - tig0024758:29232-29251 Msa1420130:intron 50.0%
TGACACCATTCGAGAGAGTG+GGG - tig0024758:29282-29301 Msa1420130:intron 50.0%
! AGATCAAATGGCGGAGAGTC+AGG - tig0024758:29397-29416 Msa1420130:intron 50.0%
GCGGAGAGTCAGGTTAAAAG+AGG - tig0024758:29407-29426 Msa1420130:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + tig0024758:29549-29568 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + tig0024758:29555-29574 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - tig0024758:29552-29571 Msa1420130:intron 50.0%
AGAGCAGCAGAGACGAATTC+AGG + tig0024758:29835-29854 None:intergenic 50.0%
GTCCACGATGGTACATTCAC+AGG + tig0024758:29883-29902 None:intergenic 50.0%
TGAAGAGGACAGAGCTCTAC+TGG + tig0024758:29976-29995 None:intergenic 50.0%
AGTAGAGCTCTGTCCTCTTC+AGG - tig0024758:29975-29994 Msa1420130:CDS 50.0%
CCCGAACCCATTAAAGCAGA+GGG + tig0024758:30086-30105 None:intergenic 50.0%
!! CCCTCTGCTTTAATGGGTTC+GGG - tig0024758:30083-30102 Msa1420130:five_prime_UTR 50.0%
TCCCGAACCCATTAAAGCAG+AGG + tig0024758:30087-30106 None:intergenic 50.0%
AAGGATCGCGTGTCGCAGTA+CGG - tig0024758:26121-26140 Msa1420130:intron 55.0%
!! CAAGGAATGGGTGTTGGAGG+AGG - tig0024758:26350-26369 Msa1420130:three_prime_UTR 55.0%
GATGTAGGCGAATCTGCGAG+AGG - tig0024758:26612-26631 Msa1420130:three_prime_UTR 55.0%
TTGGACTCCCCTGCTTCCAT+AGG + tig0024758:27096-27115 None:intergenic 55.0%
CTGGTAGGGCTGCTCTTCTA+GGG + tig0024758:27917-27936 None:intergenic 55.0%
TCTGGTAGGGCTGCTCTTCT+AGG + tig0024758:27918-27937 None:intergenic 55.0%
AGAAGAGCAGCCCTACCAGA+TGG - tig0024758:27918-27937 Msa1420130:intron 55.0%
CTGGCACTCTGCTCACTTTG+TGG + tig0024758:28396-28415 None:intergenic 55.0%
GGCATGACAAATACAGGCCC+AGG + tig0024758:28851-28870 None:intergenic 55.0%
TGTTGGCGCAGGTCTATTGG+TGG + tig0024758:28872-28891 None:intergenic 55.0%
CGGAGATGAGGATGTTGCGT+TGG - tig0024758:29224-29243 Msa1420130:intron 55.0%
GACACCATTCGAGAGAGTGG+GGG - tig0024758:29283-29302 Msa1420130:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + tig0024758:29541-29560 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - tig0024758:29540-29559 Msa1420130:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - tig0024758:29541-29560 Msa1420130:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - tig0024758:29547-29566 Msa1420130:CDS 55.0%
GGCGACGCAGTTCACACATG+TGG + tig0024758:25514-25533 Msa1420120:intron 60.0%
! GGAGTAGAGGGCATGCGAGT+TGG - tig0024758:26660-26679 Msa1420130:three_prime_UTR 60.0%
! GTAGAGGGCATGCGAGTTGG+AGG - tig0024758:26663-26682 Msa1420130:three_prime_UTR 60.0%
! GTAGGGCTGCTCTTCTAGGG+CGG + tig0024758:27914-27933 None:intergenic 60.0%
CTAGCAGCACCTCCGCAAAG+TGG - tig0024758:28331-28350 Msa1420130:intron 60.0%
CTTCGTATGGTGGCCCTGCA+TGG - tig0024758:28619-28638 Msa1420130:CDS 60.0%
GCTACCCCCACTCTCTCGAA+TGG + tig0024758:29290-29309 None:intergenic 60.0%
! GGGCATGCGAGTTGGAGGCC+AGG - tig0024758:26668-26687 Msa1420130:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0024758 gene 24607 30121 24607 ID=Msa1420130;Name=Msa1420130
tig0024758 mRNA 24607 30121 24607 ID=Msa1420130-mRNA-1;Parent=Msa1420130;Name=Msa1420130-mRNA-1;_AED=0.11;_eAED=0.11;_QI=115|1|1|1|0.66|0.53|13|1267|236
tig0024758 exon 24607 24752 24607 ID=Msa1420130-mRNA-1:exon:1290;Parent=Msa1420130-mRNA-1
tig0024758 exon 24846 25024 24846 ID=Msa1420130-mRNA-1:exon:1289;Parent=Msa1420130-mRNA-1
tig0024758 exon 25848 26112 25848 ID=Msa1420130-mRNA-1:exon:1288;Parent=Msa1420130-mRNA-1
tig0024758 exon 26188 26892 26188 ID=Msa1420130-mRNA-1:exon:1287;Parent=Msa1420130-mRNA-1
tig0024758 exon 26975 27015 26975 ID=Msa1420130-mRNA-1:exon:1286;Parent=Msa1420130-mRNA-1
tig0024758 exon 27586 27663 27586 ID=Msa1420130-mRNA-1:exon:1285;Parent=Msa1420130-mRNA-1
tig0024758 exon 28039 28128 28039 ID=Msa1420130-mRNA-1:exon:1284;Parent=Msa1420130-mRNA-1
tig0024758 exon 28352 28426 28352 ID=Msa1420130-mRNA-1:exon:1283;Parent=Msa1420130-mRNA-1
tig0024758 exon 28591 28648 28591 ID=Msa1420130-mRNA-1:exon:1282;Parent=Msa1420130-mRNA-1
tig0024758 exon 29025 29080 29025 ID=Msa1420130-mRNA-1:exon:1281;Parent=Msa1420130-mRNA-1
tig0024758 exon 29515 29570 29515 ID=Msa1420130-mRNA-1:exon:1280;Parent=Msa1420130-mRNA-1
tig0024758 exon 29679 29831 29679 ID=Msa1420130-mRNA-1:exon:1279;Parent=Msa1420130-mRNA-1
tig0024758 exon 29931 30121 29931 ID=Msa1420130-mRNA-1:exon:1278;Parent=Msa1420130-mRNA-1
tig0024758 five_prime_UTR 30007 30121 30007 ID=Msa1420130-mRNA-1:five_prime_utr;Parent=Msa1420130-mRNA-1
tig0024758 CDS 29931 30006 29931 ID=Msa1420130-mRNA-1:cds;Parent=Msa1420130-mRNA-1
tig0024758 CDS 29679 29831 29679 ID=Msa1420130-mRNA-1:cds;Parent=Msa1420130-mRNA-1
tig0024758 CDS 29515 29570 29515 ID=Msa1420130-mRNA-1:cds;Parent=Msa1420130-mRNA-1
tig0024758 CDS 29025 29080 29025 ID=Msa1420130-mRNA-1:cds;Parent=Msa1420130-mRNA-1
tig0024758 CDS 28591 28648 28591 ID=Msa1420130-mRNA-1:cds;Parent=Msa1420130-mRNA-1
tig0024758 CDS 28352 28426 28352 ID=Msa1420130-mRNA-1:cds;Parent=Msa1420130-mRNA-1
tig0024758 CDS 28039 28128 28039 ID=Msa1420130-mRNA-1:cds;Parent=Msa1420130-mRNA-1
tig0024758 CDS 27586 27663 27586 ID=Msa1420130-mRNA-1:cds;Parent=Msa1420130-mRNA-1
tig0024758 CDS 26975 27015 26975 ID=Msa1420130-mRNA-1:cds;Parent=Msa1420130-mRNA-1
tig0024758 CDS 26865 26892 26865 ID=Msa1420130-mRNA-1:cds;Parent=Msa1420130-mRNA-1
tig0024758 three_prime_UTR 26188 26864 26188 ID=Msa1420130-mRNA-1:three_prime_utr;Parent=Msa1420130-mRNA-1
tig0024758 three_prime_UTR 25848 26112 25848 ID=Msa1420130-mRNA-1:three_prime_utr;Parent=Msa1420130-mRNA-1
tig0024758 three_prime_UTR 24846 25024 24846 ID=Msa1420130-mRNA-1:three_prime_utr;Parent=Msa1420130-mRNA-1
tig0024758 three_prime_UTR 24607 24752 24607 ID=Msa1420130-mRNA-1:three_prime_utr;Parent=Msa1420130-mRNA-1
Gene Sequence

>Msa1420130

ATGGAACTCTCTCTTCTCAACCATCATCACCATCCTTCACTCCTTCATTGCACTCTCACATCCAATCTCTTCACAAGAACACACAAAAGACTTTACAACAAAAATTCAAATAGGTTAATACCATGCAGCTGTTCACATTCTTCCTCCAATAAAACTGTTGTAGAACCAATCTCTATGTCTTTACAAATTGAAGGAAGGAGAGCATTACTCACTTCTCTCCTCACAACATTTGCTGGAGTTTATGCATGTGATGTGGCTGAAGCTGTTAGCACTAGTAGAAGAGCTCTAAGAGGAGCCAAAATTCCTGAAAGTGATTTCAAAACTTTGCCCAATGGTCTCAAGTACTATGATTTGAAGGTTGGCGATGGAGCTGAAGCTGTGAAAGGATCGCGTGTCGCAATTCACTATGTTGCTAAATGGAGGGGAATCACCTTCATGACTAGTAGACAAGGAATGGGTGTTGGAGGAGGAACGCCCTACGGATTTGATGTAGGCGAATCTGCGAGAGGAAATGTCTTAAAAGGTTTGGATGTAGGAGTAGAGGGCATGCGAGTTGGAGGCCAGCGGTTGTTAATTGTTCCTCCTGAACTTGCCTATGGAAGCAGGGGAGTCCAAGAAATTCCTCCAAATGCAACAATAGAGATGGATATTGAACTGCTTGCCATCAAACAAAGTCCATTTGGGACTGCCGTAAAGATTGTTGAAGGCTAA

Protein sequence

>Msa1420130

MELSLLNHHHHPSLLHCTLTSNLFTRTHKRLYNKNSNRLIPCSCSHSSSNKTVVEPISMSLQIEGRRALLTSLLTTFAGVYACDVAEAVSTSRRALRGAKIPESDFKTLPNGLKYYDLKVGDGAEAVKGSRVAIHYVAKWRGITFMTSRQGMGVGGGTPYGFDVGESARGNVLKGLDVGVEGMRVGGQRLLIVPPELAYGSRGVQEIPPNATIEMDIELLAIKQSPFGTAVKIVEG*