AlfalfaGEDB | Msa0476490

M. sativa cultivar zhongmu-4 / Msa0476490

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010598 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476490	XP_003603201.1	94.313	211	12	0	1	211	1	211	1.33e-136	391

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476490	sp\|Q84VQ4\|NDHU_ARATH	58.480	171	69	2	42	210	47	217	3.96e-61	193

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476490	G7J8E5	94.313	211	12	0	1	211	1	211	6.36e-137	391

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0476490	0.840767	7.131822e-58	-8.615850e-47
Msa0000220	Msa0476490	0.903287	4.053913e-79	-8.615850e-47
Msa0001040	Msa0476490	0.848122	7.494013e-60	-8.615850e-47
Msa0001420	Msa0476490	0.803298	3.727100e-49	-8.615850e-47
Msa0001510	Msa0476490	0.853007	3.175918e-61	-8.615850e-47
Msa0001540	Msa0476490	0.844933	5.561652e-59	-8.615850e-47
Msa0002690	Msa0476490	0.852418	4.677565e-61	-8.615850e-47
Msa0002700	Msa0476490	0.850357	1.788810e-60	-8.615850e-47
Msa0003340	Msa0476490	0.806254	8.993946e-50	-8.615850e-47
Msa0003370	Msa0476490	0.809753	1.619108e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476490	MtrunA17_Chr3g0136201	94.313	211	12	0	1	211	1	211	1.23e-140	391

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476490	AT5G21430.1	58.480	171	69	2	42	210	47	217	4.02e-62	193
Msa0476490	AT5G21430.2	57.895	171	69	3	42	210	47	216	1.15e-59	186

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Find 69 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACACTCCAAGCAAGCT+AGG	0.601547	3_3:+80294207	Msa0476490:CDS
AACGTCGAAAGAGCTCTCCG+TGG	0.728158	3_3:+80294381	Msa0476490:CDS
AAGAGGATGTCCATATGACA+TGG	0.675165	3_3:+80294536	Msa0476490:CDS
AAGCTCTGCAGGTTCAACGG+AGG	0.715676	3_3:+80294299	Msa0476490:CDS
AAGTATCCAACCAGTCTGGT+TGG	0.621927	3_3:-80295196	None:intergenic
AAGTCCCCTGTTCATTCTTT+GGG	0.321452	3_3:-80295476	None:intergenic
AATAAATGAAAACTTAGCAA+TGG	0.584133	3_3:+80294143	Msa0476490:exon
AATATTTCATGTGAACCTGC+AGG	0.528281	3_3:+80294016	None:intergenic
AATGCAAATTGTAGTGGTGG+TGG	0.612182	3_3:-80294178	None:intergenic
AATTCATTGCAGCCCTCTTA+TGG	0.284290	3_3:+80295566	Msa0476490:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTACAGATGCAGATCATTA+TGG	+	chr3_3:80294498-80294517	Msa0476490:CDS	30.0%
GCCAATTGCTTATAATAACA+AGG	+	chr3_3:80294726-80294745	Msa0476490:CDS	30.0%
TAATAACAAGGTTCGAGAAT+TGG	+	chr3_3:80294738-80294757	Msa0476490:CDS	30.0%
TCATACATTCTTCTTTCATC+CGG	-	chr3_3:80294937-80294956	None:intergenic	30.0%
ATGAAAGAAGAATGTATGAC+TGG	+	chr3_3:80294938-80294957	Msa0476490:CDS	30.0%
AAACAAGTAATTAGTACCTG+TGG	-	chr3_3:80295048-80295067	None:intergenic	30.0%
CTAGCATTTGTGTTATCAAT+TGG	+	chr3_3:80295238-80295257	Msa0476490:CDS	30.0%
ATTACAGATGCAGATCATTA+TGG	+	chr3_3:80294498-80294517	Msa0476490:CDS	30.0%
GCCAATTGCTTATAATAACA+AGG	+	chr3_3:80294726-80294745	Msa0476490:CDS	30.0%
TAATAACAAGGTTCGAGAAT+TGG	+	chr3_3:80294738-80294757	Msa0476490:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	80294026	80295605	80294026	ID=Msa0476490;Name=Msa0476490
chr3_3	mRNA	80294026	80295605	80294026	ID=Msa0476490-mRNA-1;Parent=Msa0476490;Name=Msa0476490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=136\|1\|1\|1\|1\|1\|5\|332\|211
chr3_3	exon	80294026	80294408	80294026	ID=Msa0476490-mRNA-1:exon:21937;Parent=Msa0476490-mRNA-1
chr3_3	exon	80294496	80294557	80294496	ID=Msa0476490-mRNA-1:exon:21938;Parent=Msa0476490-mRNA-1
chr3_3	exon	80294724	80294813	80294724	ID=Msa0476490-mRNA-1:exon:21939;Parent=Msa0476490-mRNA-1
chr3_3	exon	80294910	80295050	80294910	ID=Msa0476490-mRNA-1:exon:21940;Parent=Msa0476490-mRNA-1
chr3_3	exon	80295178	80295605	80295178	ID=Msa0476490-mRNA-1:exon:21941;Parent=Msa0476490-mRNA-1
chr3_3	five_prime_UTR	80294026	80294161	80294026	ID=Msa0476490-mRNA-1:five_prime_utr;Parent=Msa0476490-mRNA-1
chr3_3	CDS	80294162	80294408	80294162	ID=Msa0476490-mRNA-1:cds;Parent=Msa0476490-mRNA-1
chr3_3	CDS	80294496	80294557	80294496	ID=Msa0476490-mRNA-1:cds;Parent=Msa0476490-mRNA-1
chr3_3	CDS	80294724	80294813	80294724	ID=Msa0476490-mRNA-1:cds;Parent=Msa0476490-mRNA-1
chr3_3	CDS	80294910	80295050	80294910	ID=Msa0476490-mRNA-1:cds;Parent=Msa0476490-mRNA-1
chr3_3	CDS	80295178	80295273	80295178	ID=Msa0476490-mRNA-1:cds;Parent=Msa0476490-mRNA-1
chr3_3	three_prime_UTR	80295274	80295605	80295274	ID=Msa0476490-mRNA-1:three_prime_utr;Parent=Msa0476490-mRNA-1

Gene Sequence

>Msa0476490

ATGGCCTTGTCCTCCACCACCACCACTACAATTTGCATTCCAAGTAACAACACTCCAAGCAAGCTAGGATTCTCAACTAATAACATTGTTTTTTCTGTAAAACAAGCGCGGAAACTACGTATCAGAAGCTCTAGTGAAAGCTCTGCAGGTTCAACGGAGGTTGAGTCGGAGAGTTCCATTGAACTTCCAAAAGAATCATCTTCTTTAATTTCTGTTCTCAACGTCGAAAGAGCTCTCCGTGGCATACCTATTACAGATGCAGATCATTATGGTAGACTTGGCTTACCAAGAGGATGTCCATATGACATGGTGCCAATTGCTTATAATAACAAGGTTCGAGAATTGGAGAGTCAAGGTTTAGAGGAAGACATACTTAACAAGAAATTGGAACTTCTCAGAGAATCATACACTATCATGTCATCGCCGGATGAAAGAAGAATGTATGACTGGAGCTTGTCCAGAGAAGATAACACAGACACATACGTTTGGCCATTTGAGGTTGATGTTTCGGTACTTCAAGAAGGAGATCCTCCACCACAGGAACCTGAGGATGTAGGACCAACCAGACTGGTTGGATACTTTCTAGCGGGATGGATACTGCTAGCATTTGTGTTATCAATTGGACTAAACTTATAG

Protein sequence

>Msa0476490

MALSSTTTTTICIPSNNTPSKLGFSTNNIVFSVKQARKLRIRSSSESSAGSTEVESESSIELPKESSSLISVLNVERALRGIPITDADHYGRLGLPRGCPYDMVPIAYNNKVRELESQGLEEDILNKKLELLRESYTIMSSPDERRMYDWSLSREDNTDTYVWPFEVDVSVLQEGDPPPQEPEDVGPTRLVGYFLAGWILLAFVLSIGLNL*