AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476490 MtrunA17_Chr3g0136201 94.313 211 12 0 1 211 1 211 1.23e-140 391
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476490 AT5G21430.1 58.480 171 69 2 42 210 47 217 4.02e-62 193
Msa0476490 AT5G21430.2 57.895 171 69 3 42 210 47 216 1.15e-59 186

Find 69 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTCCCCTGTTCATTCTT+TGG 0.213829 3_3:-80295477 None:intergenic
ATTAAAGAAGATGATTCTTT+TGG 0.261740 3_3:-80294348 None:intergenic
TTATGGTTTATAAAATTATC+TGG 0.266697 3_3:+80295583 Msa0476490:three_prime_UTR
AGACATACTTAACAAGAAAT+TGG 0.280104 3_3:+80294780 Msa0476490:CDS
AATTCATTGCAGCCCTCTTA+TGG 0.284290 3_3:+80295566 Msa0476490:three_prime_UTR
ATTGGAGAGTCAAGGTTTAG+AGG 0.312619 3_3:+80294756 Msa0476490:CDS
GCCATTTGAGGTTGATGTTT+CGG 0.315689 3_3:+80294999 Msa0476490:CDS
AAGTCCCCTGTTCATTCTTT+GGG 0.321452 3_3:-80295476 None:intergenic
TAATAACAAGGTTCGAGAAT+TGG 0.322385 3_3:+80294738 Msa0476490:CDS
CTAGCATTTGTGTTATCAAT+TGG 0.334884 3_3:+80295238 Msa0476490:CDS
ATTACAGATGCAGATCATTA+TGG 0.366825 3_3:+80294498 Msa0476490:CDS
CCAGAGGAGAACTGTGCAAA+AGG 0.395734 3_3:-80295444 None:intergenic
TTATCTCCCAAAGAATGAAC+AGG 0.401092 3_3:+80295470 Msa0476490:three_prime_UTR
TGTGTCTGTGTTATCTTCTC+TGG 0.408544 3_3:-80294968 None:intergenic
ACCTTGTTATTATAAGCAAT+TGG 0.411448 3_3:-80294727 None:intergenic
CACATACGTTTGGCCATTTG+AGG 0.421335 3_3:+80294987 Msa0476490:CDS
TCATACATTCTTCTTTCATC+CGG 0.438615 3_3:-80294934 None:intergenic
ATGTTTCTGACCATGTCATA+TGG 0.442154 3_3:-80294546 None:intergenic
TTGCTTGGAGTGTTGTTACT+TGG 0.444787 3_3:-80294201 None:intergenic
GTTGAGAATCCTAGCTTGCT+TGG 0.458033 3_3:-80294216 None:intergenic
CTGGTTGGTCCTACATCCTC+AGG 0.458680 3_3:-80295181 None:intergenic
ACCGAAACATCAACCTCAAA+TGG 0.480733 3_3:-80295000 None:intergenic
AGCTCTAGTGAAAGCTCTGC+AGG 0.490030 3_3:+80294288 Msa0476490:CDS
TTAGTTTAACAAAGAGTGAA+AGG 0.497310 3_3:-80295508 None:intergenic
GCAGATCATTATGGTAGACT+TGG 0.523390 3_3:+80294507 Msa0476490:CDS
GCAAATTGTAGTGGTGGTGG+TGG 0.527140 3_3:-80294175 None:intergenic
AATATTTCATGTGAACCTGC+AGG 0.528281 3_3:+80294016 None:intergenic
TAGTTTAACAAAGAGTGAAA+GGG 0.529442 3_3:-80295507 None:intergenic
GGTTGTAGATAACACATTTG+TGG 0.531201 3_3:+80294037 Msa0476490:five_prime_UTR
TAGAAAGTATCCAACCAGTC+TGG 0.536223 3_3:-80295200 None:intergenic
CTGGTTGGATACTTTCTAGC+GGG 0.536918 3_3:+80295205 Msa0476490:CDS
GAAACAATGATATAATGTAA+TGG 0.538453 3_3:+80295330 Msa0476490:three_prime_UTR
ATAACACAGACACATACGTT+TGG 0.539673 3_3:+80294977 Msa0476490:CDS
ATGAAAGAAGAATGTATGAC+TGG 0.543817 3_3:+80294938 Msa0476490:CDS
GATGTTTCGGTACTTCAAGA+AGG 0.552371 3_3:+80295012 Msa0476490:CDS
CAGAGGAGAACTGTGCAAAA+GGG 0.552503 3_3:-80295443 None:intergenic
ATGTCATATGGACATCCTCT+TGG 0.556234 3_3:-80294534 None:intergenic
AGTGGTGGTGGTGGAGGACA+AGG 0.559487 3_3:-80294166 None:intergenic
AATTGTAGTGGTGGTGGTGG+AGG 0.559668 3_3:-80294172 None:intergenic
TTGGATACTTTCTAGCGGGA+TGG 0.565729 3_3:+80295209 Msa0476490:CDS
GTAATTAGTACCTGTGGTGG+AGG 0.566183 3_3:-80295039 None:intergenic
ATGTGTTATCTACAACCTGC+AGG 0.570534 3_3:-80294031 None:intergenic
GTTCGAGAATTGGAGAGTCA+AGG 0.571210 3_3:+80294748 Msa0476490:CDS
ATGAAATCAAACAATAAACA+TGG 0.573981 3_3:-80294084 None:intergenic
TGAAAGCTCTGCAGGTTCAA+CGG 0.578952 3_3:+80294296 Msa0476490:CDS
GTAGGACCAACCAGACTGGT+TGG 0.579118 3_3:+80295190 Msa0476490:CDS
AATAAATGAAAACTTAGCAA+TGG 0.584133 3_3:+80294143 Msa0476490:exon
CAAGTAATTAGTACCTGTGG+TGG 0.590198 3_3:-80295042 None:intergenic
GGATGTAGGACCAACCAGAC+TGG 0.590754 3_3:+80295186 Msa0476490:CDS
TGGCAGGAACCTGAGGATGT+AGG 0.592315 3_3:+80295172 Msa0476490:intron
AACAACACTCCAAGCAAGCT+AGG 0.601547 3_3:+80294207 Msa0476490:CDS
ATACACTATCATGTCATCGC+CGG 0.604771 3_3:+80294915 Msa0476490:CDS
GCCAATTGCTTATAATAACA+AGG 0.606196 3_3:+80294726 Msa0476490:CDS
AATGCAAATTGTAGTGGTGG+TGG 0.612182 3_3:-80294178 None:intergenic
TATCTCCCAAAGAATGAACA+GGG 0.615745 3_3:+80295471 Msa0476490:three_prime_UTR
AGGTTCAACGGAGGTTGAGT+CGG 0.620899 3_3:+80294308 Msa0476490:CDS
AAGTATCCAACCAGTCTGGT+TGG 0.621927 3_3:-80295196 None:intergenic
AGAAGGAGATCCTCCACCAC+AGG 0.633320 3_3:+80295029 Msa0476490:CDS
ACTTGGAATGCAAATTGTAG+TGG 0.640752 3_3:-80294184 None:intergenic
GGTAGACTTGGCTTACCAAG+AGG 0.643717 3_3:+80294519 Msa0476490:CDS
TGAAATCAAACAATAAACAT+GGG 0.646221 3_3:-80294083 None:intergenic
TGGAAAACATACGTATGCCA+CGG 0.651444 3_3:-80294398 None:intergenic
ACATGGGTGAGATAATGCAA+TGG 0.662642 3_3:-80294067 None:intergenic
TGGAATGCAAATTGTAGTGG+TGG 0.664067 3_3:-80294181 None:intergenic
AAGAGGATGTCCATATGACA+TGG 0.675165 3_3:+80294536 Msa0476490:CDS
ACTGGTTGGATACTTTCTAG+CGG 0.691428 3_3:+80295204 Msa0476490:CDS
ATCTCCCAAAGAATGAACAG+GGG 0.692806 3_3:+80295472 Msa0476490:three_prime_UTR
AAGCTCTGCAGGTTCAACGG+AGG 0.715676 3_3:+80294299 Msa0476490:CDS
AACGTCGAAAGAGCTCTCCG+TGG 0.728158 3_3:+80294381 Msa0476490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCATTGTTTCTTTTTTT+GGG - chr3_3:80295323-80295342 None:intergenic 15.0%
!!! TATATCATTGTTTCTTTTTT+TGG - chr3_3:80295324-80295343 None:intergenic 15.0%
!!! TAATTTTATAAACCATAAGA+GGG - chr3_3:80295581-80295600 None:intergenic 15.0%
!!! ATAATTTTATAAACCATAAG+AGG - chr3_3:80295582-80295601 None:intergenic 15.0%
!! TTATGGTTTATAAAATTATC+TGG + chr3_3:80295583-80295602 Msa0476490:three_prime_UTR 15.0%
!! TATGGTTTATAAAATTATCT+GGG + chr3_3:80295584-80295603 Msa0476490:three_prime_UTR 15.0%
!!! ATATCATTGTTTCTTTTTTT+GGG - chr3_3:80295323-80295342 None:intergenic 15.0%
!!! TATATCATTGTTTCTTTTTT+TGG - chr3_3:80295324-80295343 None:intergenic 15.0%
!!! TAATTTTATAAACCATAAGA+GGG - chr3_3:80295581-80295600 None:intergenic 15.0%
!!! ATAATTTTATAAACCATAAG+AGG - chr3_3:80295582-80295601 None:intergenic 15.0%
!! TGAAATCAAACAATAAACAT+GGG - chr3_3:80294086-80294105 None:intergenic 20.0%
!! ATGAAATCAAACAATAAACA+TGG - chr3_3:80294087-80294106 None:intergenic 20.0%
!!! ATTGCTAAGTTTTCATTTAT+TGG - chr3_3:80294144-80294163 None:intergenic 20.0%
!! AATAAATGAAAACTTAGCAA+TGG + chr3_3:80294143-80294162 Msa0476490:exon 20.0%
!!! ATTAAAGAAGATGATTCTTT+TGG - chr3_3:80294351-80294370 None:intergenic 20.0%
!! ATATAACAACAACAACATTA+TGG - chr3_3:80294421-80294440 None:intergenic 20.0%
!! TTGAAATGATCCATTTAAAA+CGG + chr3_3:80295134-80295153 Msa0476490:intron 20.0%
!!! TATCATTGTTTCTTTTTTTG+GGG - chr3_3:80295322-80295341 None:intergenic 20.0%
!! GAAACAATGATATAATGTAA+TGG + chr3_3:80295330-80295349 Msa0476490:three_prime_UTR 20.0%
!! TGAAATCAAACAATAAACAT+GGG - chr3_3:80294086-80294105 None:intergenic 20.0%
!! ATGAAATCAAACAATAAACA+TGG - chr3_3:80294087-80294106 None:intergenic 20.0%
!!! ATTGCTAAGTTTTCATTTAT+TGG - chr3_3:80294144-80294163 None:intergenic 20.0%
!! AATAAATGAAAACTTAGCAA+TGG + chr3_3:80294143-80294162 Msa0476490:exon 20.0%
!!! ATTAAAGAAGATGATTCTTT+TGG - chr3_3:80294351-80294370 None:intergenic 20.0%
!! ATATAACAACAACAACATTA+TGG - chr3_3:80294421-80294440 None:intergenic 20.0%
!! TTGAAATGATCCATTTAAAA+CGG + chr3_3:80295134-80295153 Msa0476490:intron 20.0%
!!! TATCATTGTTTCTTTTTTTG+GGG - chr3_3:80295322-80295341 None:intergenic 20.0%
!! GAAACAATGATATAATGTAA+TGG + chr3_3:80295330-80295349 Msa0476490:three_prime_UTR 20.0%
! GAATTGAATTGATGAAGATA+TGG + chr3_3:80294461-80294480 Msa0476490:intron 25.0%
!! TGGTCAGAAACATTTTATAT+CGG + chr3_3:80294556-80294575 Msa0476490:intron 25.0%
! TCGGATTTAATTCATATGAA+AGG + chr3_3:80294575-80294594 Msa0476490:intron 25.0%
!!! ACCTTGTTATTATAAGCAAT+TGG - chr3_3:80294730-80294749 None:intergenic 25.0%
! AGACATACTTAACAAGAAAT+TGG + chr3_3:80294780-80294799 Msa0476490:CDS 25.0%
! TGTGTTTGCATCATTATTAT+AGG + chr3_3:80294844-80294863 Msa0476490:intron 25.0%
! TTGGTTAACCTTAATTGTAT+AGG + chr3_3:80294888-80294907 Msa0476490:intron 25.0%
! GTATGATTCCTATACAATTA+AGG - chr3_3:80294899-80294918 None:intergenic 25.0%
!! TTTCTATTTCTCAACTTCTT+AGG + chr3_3:80295065-80295084 Msa0476490:intron 25.0%
!!! ATTGGAAATACCGTTTTAAA+TGG - chr3_3:80295147-80295166 None:intergenic 25.0%
!!! ATCATTGTTTCTTTTTTTGG+GGG - chr3_3:80295321-80295340 None:intergenic 25.0%
!! AAGCAACAGATAAAGTTTTA+AGG - chr3_3:80295423-80295442 None:intergenic 25.0%
! TAGTTTAACAAAGAGTGAAA+GGG - chr3_3:80295510-80295529 None:intergenic 25.0%
! TTAGTTTAACAAAGAGTGAA+AGG - chr3_3:80295511-80295530 None:intergenic 25.0%
! GAATTGAATTGATGAAGATA+TGG + chr3_3:80294461-80294480 Msa0476490:intron 25.0%
!! TGGTCAGAAACATTTTATAT+CGG + chr3_3:80294556-80294575 Msa0476490:intron 25.0%
! TCGGATTTAATTCATATGAA+AGG + chr3_3:80294575-80294594 Msa0476490:intron 25.0%
!!! ACCTTGTTATTATAAGCAAT+TGG - chr3_3:80294730-80294749 None:intergenic 25.0%
! AGACATACTTAACAAGAAAT+TGG + chr3_3:80294780-80294799 Msa0476490:CDS 25.0%
! TGTGTTTGCATCATTATTAT+AGG + chr3_3:80294844-80294863 Msa0476490:intron 25.0%
! TTGGTTAACCTTAATTGTAT+AGG + chr3_3:80294888-80294907 Msa0476490:intron 25.0%
! GTATGATTCCTATACAATTA+AGG - chr3_3:80294899-80294918 None:intergenic 25.0%
!! TTTCTATTTCTCAACTTCTT+AGG + chr3_3:80295065-80295084 Msa0476490:intron 25.0%
!!! ATTGGAAATACCGTTTTAAA+TGG - chr3_3:80295147-80295166 None:intergenic 25.0%
!!! ATCATTGTTTCTTTTTTTGG+GGG - chr3_3:80295321-80295340 None:intergenic 25.0%
!! AAGCAACAGATAAAGTTTTA+AGG - chr3_3:80295423-80295442 None:intergenic 25.0%
! TAGTTTAACAAAGAGTGAAA+GGG - chr3_3:80295510-80295529 None:intergenic 25.0%
! TTAGTTTAACAAAGAGTGAA+AGG - chr3_3:80295511-80295530 None:intergenic 25.0%
!!! TTTTTTCTGTAAAACAAGCG+CGG + chr3_3:80294250-80294269 Msa0476490:CDS 30.0%
!! TGATTCTTTTGGAAGTTCAA+TGG - chr3_3:80294340-80294359 None:intergenic 30.0%
ATTACAGATGCAGATCATTA+TGG + chr3_3:80294498-80294517 Msa0476490:CDS 30.0%
GCCAATTGCTTATAATAACA+AGG + chr3_3:80294726-80294745 Msa0476490:CDS 30.0%
TAATAACAAGGTTCGAGAAT+TGG + chr3_3:80294738-80294757 Msa0476490:CDS 30.0%
TCATACATTCTTCTTTCATC+CGG - chr3_3:80294937-80294956 None:intergenic 30.0%
ATGAAAGAAGAATGTATGAC+TGG + chr3_3:80294938-80294957 Msa0476490:CDS 30.0%
AAACAAGTAATTAGTACCTG+TGG - chr3_3:80295048-80295067 None:intergenic 30.0%
! AACGGTATTTCCAATTTTCA+TGG + chr3_3:80295152-80295171 Msa0476490:intron 30.0%
CTAGCATTTGTGTTATCAAT+TGG + chr3_3:80295238-80295257 Msa0476490:CDS 30.0%
!!! TTTTTTCTGTAAAACAAGCG+CGG + chr3_3:80294250-80294269 Msa0476490:CDS 30.0%
!! TGATTCTTTTGGAAGTTCAA+TGG - chr3_3:80294340-80294359 None:intergenic 30.0%
ATTACAGATGCAGATCATTA+TGG + chr3_3:80294498-80294517 Msa0476490:CDS 30.0%
GCCAATTGCTTATAATAACA+AGG + chr3_3:80294726-80294745 Msa0476490:CDS 30.0%
TAATAACAAGGTTCGAGAAT+TGG + chr3_3:80294738-80294757 Msa0476490:CDS 30.0%
TCATACATTCTTCTTTCATC+CGG - chr3_3:80294937-80294956 None:intergenic 30.0%
ATGAAAGAAGAATGTATGAC+TGG + chr3_3:80294938-80294957 Msa0476490:CDS 30.0%
AAACAAGTAATTAGTACCTG+TGG - chr3_3:80295048-80295067 None:intergenic 30.0%
! AACGGTATTTCCAATTTTCA+TGG + chr3_3:80295152-80295171 Msa0476490:intron 30.0%
CTAGCATTTGTGTTATCAAT+TGG + chr3_3:80295238-80295257 Msa0476490:CDS 30.0%
GGTTGTAGATAACACATTTG+TGG + chr3_3:80294037-80294056 Msa0476490:five_prime_UTR 35.0%
ACTTGGAATGCAAATTGTAG+TGG - chr3_3:80294187-80294206 None:intergenic 35.0%
! ATGTTTCTGACCATGTCATA+TGG - chr3_3:80294549-80294568 None:intergenic 35.0%
ATGTCACTCTACACTTTAAC+AGG + chr3_3:80294702-80294721 Msa0476490:intron 35.0%
TATTATAGGTGAGACTTGAG+AGG + chr3_3:80294858-80294877 Msa0476490:intron 35.0%
ATAACACAGACACATACGTT+TGG + chr3_3:80294977-80294996 Msa0476490:CDS 35.0%
! CTATTTCTCAACTTCTTAGG+AGG + chr3_3:80295068-80295087 Msa0476490:intron 35.0%
! GTATTTCCAATTTTCATGGC+AGG + chr3_3:80295156-80295175 Msa0476490:intron 35.0%
TTATCTCCCAAAGAATGAAC+AGG + chr3_3:80295470-80295489 Msa0476490:three_prime_UTR 35.0%
TATCTCCCAAAGAATGAACA+GGG + chr3_3:80295471-80295490 Msa0476490:three_prime_UTR 35.0%
GGTTGTAGATAACACATTTG+TGG + chr3_3:80294037-80294056 Msa0476490:five_prime_UTR 35.0%
ACTTGGAATGCAAATTGTAG+TGG - chr3_3:80294187-80294206 None:intergenic 35.0%
! ATGTTTCTGACCATGTCATA+TGG - chr3_3:80294549-80294568 None:intergenic 35.0%
ATGTCACTCTACACTTTAAC+AGG + chr3_3:80294702-80294721 Msa0476490:intron 35.0%
TATTATAGGTGAGACTTGAG+AGG + chr3_3:80294858-80294877 Msa0476490:intron 35.0%
ATAACACAGACACATACGTT+TGG + chr3_3:80294977-80294996 Msa0476490:CDS 35.0%
! CTATTTCTCAACTTCTTAGG+AGG + chr3_3:80295068-80295087 Msa0476490:intron 35.0%
! GTATTTCCAATTTTCATGGC+AGG + chr3_3:80295156-80295175 Msa0476490:intron 35.0%
TTATCTCCCAAAGAATGAAC+AGG + chr3_3:80295470-80295489 Msa0476490:three_prime_UTR 35.0%
TATCTCCCAAAGAATGAACA+GGG + chr3_3:80295471-80295490 Msa0476490:three_prime_UTR 35.0%
ATGTGTTATCTACAACCTGC+AGG - chr3_3:80294034-80294053 None:intergenic 40.0%
ACATGGGTGAGATAATGCAA+TGG - chr3_3:80294070-80294089 None:intergenic 40.0%
AATGCAAATTGTAGTGGTGG+TGG - chr3_3:80294181-80294200 None:intergenic 40.0%
TGGAATGCAAATTGTAGTGG+TGG - chr3_3:80294184-80294203 None:intergenic 40.0%
!! TTGCTTGGAGTGTTGTTACT+TGG - chr3_3:80294204-80294223 None:intergenic 40.0%
TGGAAAACATACGTATGCCA+CGG - chr3_3:80294401-80294420 None:intergenic 40.0%
GCAGATCATTATGGTAGACT+TGG + chr3_3:80294507-80294526 Msa0476490:CDS 40.0%
ATGTCATATGGACATCCTCT+TGG - chr3_3:80294537-80294556 None:intergenic 40.0%
AAGAGGATGTCCATATGACA+TGG + chr3_3:80294536-80294555 Msa0476490:CDS 40.0%
ATTGGAGAGTCAAGGTTTAG+AGG + chr3_3:80294756-80294775 Msa0476490:CDS 40.0%
ATACACTATCATGTCATCGC+CGG + chr3_3:80294915-80294934 Msa0476490:CDS 40.0%
TGTGTCTGTGTTATCTTCTC+TGG - chr3_3:80294971-80294990 None:intergenic 40.0%
!! GCCATTTGAGGTTGATGTTT+CGG + chr3_3:80294999-80295018 Msa0476490:CDS 40.0%
ACCGAAACATCAACCTCAAA+TGG - chr3_3:80295003-80295022 None:intergenic 40.0%
GATGTTTCGGTACTTCAAGA+AGG + chr3_3:80295012-80295031 Msa0476490:CDS 40.0%
CAAGTAATTAGTACCTGTGG+TGG - chr3_3:80295045-80295064 None:intergenic 40.0%
!! AACTTCTTAGGAGGTGTTTG+AGG + chr3_3:80295077-80295096 Msa0476490:intron 40.0%
!! TAGAAAGTATCCAACCAGTC+TGG - chr3_3:80295203-80295222 None:intergenic 40.0%
ACTGGTTGGATACTTTCTAG+CGG + chr3_3:80295204-80295223 Msa0476490:CDS 40.0%
! CTTTGGGAGATAAAAACCAG+AGG - chr3_3:80295463-80295482 None:intergenic 40.0%
ATCTCCCAAAGAATGAACAG+GGG + chr3_3:80295472-80295491 Msa0476490:three_prime_UTR 40.0%
AAGTCCCCTGTTCATTCTTT+GGG - chr3_3:80295479-80295498 None:intergenic 40.0%
AATTCATTGCAGCCCTCTTA+TGG + chr3_3:80295566-80295585 Msa0476490:three_prime_UTR 40.0%
ATGTGTTATCTACAACCTGC+AGG - chr3_3:80294034-80294053 None:intergenic 40.0%
ACATGGGTGAGATAATGCAA+TGG - chr3_3:80294070-80294089 None:intergenic 40.0%
AATGCAAATTGTAGTGGTGG+TGG - chr3_3:80294181-80294200 None:intergenic 40.0%
TGGAATGCAAATTGTAGTGG+TGG - chr3_3:80294184-80294203 None:intergenic 40.0%
!! TTGCTTGGAGTGTTGTTACT+TGG - chr3_3:80294204-80294223 None:intergenic 40.0%
TGGAAAACATACGTATGCCA+CGG - chr3_3:80294401-80294420 None:intergenic 40.0%
GCAGATCATTATGGTAGACT+TGG + chr3_3:80294507-80294526 Msa0476490:CDS 40.0%
ATGTCATATGGACATCCTCT+TGG - chr3_3:80294537-80294556 None:intergenic 40.0%
AAGAGGATGTCCATATGACA+TGG + chr3_3:80294536-80294555 Msa0476490:CDS 40.0%
ATTGGAGAGTCAAGGTTTAG+AGG + chr3_3:80294756-80294775 Msa0476490:CDS 40.0%
ATACACTATCATGTCATCGC+CGG + chr3_3:80294915-80294934 Msa0476490:CDS 40.0%
TGTGTCTGTGTTATCTTCTC+TGG - chr3_3:80294971-80294990 None:intergenic 40.0%
!! GCCATTTGAGGTTGATGTTT+CGG + chr3_3:80294999-80295018 Msa0476490:CDS 40.0%
ACCGAAACATCAACCTCAAA+TGG - chr3_3:80295003-80295022 None:intergenic 40.0%
GATGTTTCGGTACTTCAAGA+AGG + chr3_3:80295012-80295031 Msa0476490:CDS 40.0%
CAAGTAATTAGTACCTGTGG+TGG - chr3_3:80295045-80295064 None:intergenic 40.0%
!! AACTTCTTAGGAGGTGTTTG+AGG + chr3_3:80295077-80295096 Msa0476490:intron 40.0%
!! TAGAAAGTATCCAACCAGTC+TGG - chr3_3:80295203-80295222 None:intergenic 40.0%
ACTGGTTGGATACTTTCTAG+CGG + chr3_3:80295204-80295223 Msa0476490:CDS 40.0%
! CTTTGGGAGATAAAAACCAG+AGG - chr3_3:80295463-80295482 None:intergenic 40.0%
ATCTCCCAAAGAATGAACAG+GGG + chr3_3:80295472-80295491 Msa0476490:three_prime_UTR 40.0%
AAGTCCCCTGTTCATTCTTT+GGG - chr3_3:80295479-80295498 None:intergenic 40.0%
AATTCATTGCAGCCCTCTTA+TGG + chr3_3:80295566-80295585 Msa0476490:three_prime_UTR 40.0%
AACAACACTCCAAGCAAGCT+AGG + chr3_3:80294207-80294226 Msa0476490:CDS 45.0%
!! GTTGAGAATCCTAGCTTGCT+TGG - chr3_3:80294219-80294238 None:intergenic 45.0%
TGAAAGCTCTGCAGGTTCAA+CGG + chr3_3:80294296-80294315 Msa0476490:CDS 45.0%
GTTCGAGAATTGGAGAGTCA+AGG + chr3_3:80294748-80294767 Msa0476490:CDS 45.0%
TATAGGTGAGACTTGAGAGG+TGG + chr3_3:80294861-80294880 Msa0476490:intron 45.0%
AGACTTGAGAGGTGGTGATT+TGG + chr3_3:80294869-80294888 Msa0476490:intron 45.0%
CACATACGTTTGGCCATTTG+AGG + chr3_3:80294987-80295006 Msa0476490:CDS 45.0%
GTAATTAGTACCTGTGGTGG+AGG - chr3_3:80295042-80295061 None:intergenic 45.0%
!! TTCTTAGGAGGTGTTTGAGG+TGG + chr3_3:80295080-80295099 Msa0476490:intron 45.0%
CAGGTTCCTGCCATGAAAAT+TGG - chr3_3:80295165-80295184 None:intergenic 45.0%
! ATTTTCATGGCAGGAACCTG+AGG + chr3_3:80295165-80295184 Msa0476490:intron 45.0%
AAGTATCCAACCAGTCTGGT+TGG - chr3_3:80295199-80295218 None:intergenic 45.0%
! CTGGTTGGATACTTTCTAGC+GGG + chr3_3:80295205-80295224 Msa0476490:CDS 45.0%
! TTGGATACTTTCTAGCGGGA+TGG + chr3_3:80295209-80295228 Msa0476490:CDS 45.0%
CAGAGGAGAACTGTGCAAAA+GGG - chr3_3:80295446-80295465 None:intergenic 45.0%
CAAGTCCCCTGTTCATTCTT+TGG - chr3_3:80295480-80295499 None:intergenic 45.0%
AACAACACTCCAAGCAAGCT+AGG + chr3_3:80294207-80294226 Msa0476490:CDS 45.0%
!! GTTGAGAATCCTAGCTTGCT+TGG - chr3_3:80294219-80294238 None:intergenic 45.0%
TGAAAGCTCTGCAGGTTCAA+CGG + chr3_3:80294296-80294315 Msa0476490:CDS 45.0%
GTTCGAGAATTGGAGAGTCA+AGG + chr3_3:80294748-80294767 Msa0476490:CDS 45.0%
TATAGGTGAGACTTGAGAGG+TGG + chr3_3:80294861-80294880 Msa0476490:intron 45.0%
AGACTTGAGAGGTGGTGATT+TGG + chr3_3:80294869-80294888 Msa0476490:intron 45.0%
CACATACGTTTGGCCATTTG+AGG + chr3_3:80294987-80295006 Msa0476490:CDS 45.0%
GTAATTAGTACCTGTGGTGG+AGG - chr3_3:80295042-80295061 None:intergenic 45.0%
!! TTCTTAGGAGGTGTTTGAGG+TGG + chr3_3:80295080-80295099 Msa0476490:intron 45.0%
CAGGTTCCTGCCATGAAAAT+TGG - chr3_3:80295165-80295184 None:intergenic 45.0%
! ATTTTCATGGCAGGAACCTG+AGG + chr3_3:80295165-80295184 Msa0476490:intron 45.0%
AAGTATCCAACCAGTCTGGT+TGG - chr3_3:80295199-80295218 None:intergenic 45.0%
! CTGGTTGGATACTTTCTAGC+GGG + chr3_3:80295205-80295224 Msa0476490:CDS 45.0%
! TTGGATACTTTCTAGCGGGA+TGG + chr3_3:80295209-80295228 Msa0476490:CDS 45.0%
CAGAGGAGAACTGTGCAAAA+GGG - chr3_3:80295446-80295465 None:intergenic 45.0%
CAAGTCCCCTGTTCATTCTT+TGG - chr3_3:80295480-80295499 None:intergenic 45.0%
!! AATTGTAGTGGTGGTGGTGG+AGG - chr3_3:80294175-80294194 None:intergenic 50.0%
!! GCAAATTGTAGTGGTGGTGG+TGG - chr3_3:80294178-80294197 None:intergenic 50.0%
! AGCTCTAGTGAAAGCTCTGC+AGG + chr3_3:80294288-80294307 Msa0476490:CDS 50.0%
AGGTTCAACGGAGGTTGAGT+CGG + chr3_3:80294308-80294327 Msa0476490:CDS 50.0%
GGTAGACTTGGCTTACCAAG+AGG + chr3_3:80294519-80294538 Msa0476490:CDS 50.0%
CCAGAGGAGAACTGTGCAAA+AGG - chr3_3:80295447-80295466 None:intergenic 50.0%
! CCTTTTGCACAGTTCTCCTC+TGG + chr3_3:80295444-80295463 Msa0476490:three_prime_UTR 50.0%
!! AATTGTAGTGGTGGTGGTGG+AGG - chr3_3:80294175-80294194 None:intergenic 50.0%
!! GCAAATTGTAGTGGTGGTGG+TGG - chr3_3:80294178-80294197 None:intergenic 50.0%
! AGCTCTAGTGAAAGCTCTGC+AGG + chr3_3:80294288-80294307 Msa0476490:CDS 50.0%
AGGTTCAACGGAGGTTGAGT+CGG + chr3_3:80294308-80294327 Msa0476490:CDS 50.0%
GGTAGACTTGGCTTACCAAG+AGG + chr3_3:80294519-80294538 Msa0476490:CDS 50.0%
CCAGAGGAGAACTGTGCAAA+AGG - chr3_3:80295447-80295466 None:intergenic 50.0%
! CCTTTTGCACAGTTCTCCTC+TGG + chr3_3:80295444-80295463 Msa0476490:three_prime_UTR 50.0%
AAGCTCTGCAGGTTCAACGG+AGG + chr3_3:80294299-80294318 Msa0476490:CDS 55.0%
AACGTCGAAAGAGCTCTCCG+TGG + chr3_3:80294381-80294400 Msa0476490:CDS 55.0%
AGAAGGAGATCCTCCACCAC+AGG + chr3_3:80295029-80295048 Msa0476490:CDS 55.0%
TGGCAGGAACCTGAGGATGT+AGG + chr3_3:80295172-80295191 Msa0476490:intron 55.0%
! CTGGTTGGTCCTACATCCTC+AGG - chr3_3:80295184-80295203 None:intergenic 55.0%
GGATGTAGGACCAACCAGAC+TGG + chr3_3:80295186-80295205 Msa0476490:CDS 55.0%
GTAGGACCAACCAGACTGGT+TGG + chr3_3:80295190-80295209 Msa0476490:CDS 55.0%
AAGCTCTGCAGGTTCAACGG+AGG + chr3_3:80294299-80294318 Msa0476490:CDS 55.0%
AACGTCGAAAGAGCTCTCCG+TGG + chr3_3:80294381-80294400 Msa0476490:CDS 55.0%
AGAAGGAGATCCTCCACCAC+AGG + chr3_3:80295029-80295048 Msa0476490:CDS 55.0%
TGGCAGGAACCTGAGGATGT+AGG + chr3_3:80295172-80295191 Msa0476490:intron 55.0%
! CTGGTTGGTCCTACATCCTC+AGG - chr3_3:80295184-80295203 None:intergenic 55.0%
GGATGTAGGACCAACCAGAC+TGG + chr3_3:80295186-80295205 Msa0476490:CDS 55.0%
GTAGGACCAACCAGACTGGT+TGG + chr3_3:80295190-80295209 Msa0476490:CDS 55.0%
!! AGTGGTGGTGGTGGAGGACA+AGG - chr3_3:80294169-80294188 None:intergenic 60.0%
!! AGTGGTGGTGGTGGAGGACA+AGG - chr3_3:80294169-80294188 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80294026 80295605 80294026 ID=Msa0476490;Name=Msa0476490
chr3_3 mRNA 80294026 80295605 80294026 ID=Msa0476490-mRNA-1;Parent=Msa0476490;Name=Msa0476490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=136|1|1|1|1|1|5|332|211
chr3_3 exon 80294026 80294408 80294026 ID=Msa0476490-mRNA-1:exon:21937;Parent=Msa0476490-mRNA-1
chr3_3 exon 80294496 80294557 80294496 ID=Msa0476490-mRNA-1:exon:21938;Parent=Msa0476490-mRNA-1
chr3_3 exon 80294724 80294813 80294724 ID=Msa0476490-mRNA-1:exon:21939;Parent=Msa0476490-mRNA-1
chr3_3 exon 80294910 80295050 80294910 ID=Msa0476490-mRNA-1:exon:21940;Parent=Msa0476490-mRNA-1
chr3_3 exon 80295178 80295605 80295178 ID=Msa0476490-mRNA-1:exon:21941;Parent=Msa0476490-mRNA-1
chr3_3 five_prime_UTR 80294026 80294161 80294026 ID=Msa0476490-mRNA-1:five_prime_utr;Parent=Msa0476490-mRNA-1
chr3_3 CDS 80294162 80294408 80294162 ID=Msa0476490-mRNA-1:cds;Parent=Msa0476490-mRNA-1
chr3_3 CDS 80294496 80294557 80294496 ID=Msa0476490-mRNA-1:cds;Parent=Msa0476490-mRNA-1
chr3_3 CDS 80294724 80294813 80294724 ID=Msa0476490-mRNA-1:cds;Parent=Msa0476490-mRNA-1
chr3_3 CDS 80294910 80295050 80294910 ID=Msa0476490-mRNA-1:cds;Parent=Msa0476490-mRNA-1
chr3_3 CDS 80295178 80295273 80295178 ID=Msa0476490-mRNA-1:cds;Parent=Msa0476490-mRNA-1
chr3_3 three_prime_UTR 80295274 80295605 80295274 ID=Msa0476490-mRNA-1:three_prime_utr;Parent=Msa0476490-mRNA-1
Gene Sequence

>Msa0476490

ATGGCCTTGTCCTCCACCACCACCACTACAATTTGCATTCCAAGTAACAACACTCCAAGCAAGCTAGGATTCTCAACTAATAACATTGTTTTTTCTGTAAAACAAGCGCGGAAACTACGTATCAGAAGCTCTAGTGAAAGCTCTGCAGGTTCAACGGAGGTTGAGTCGGAGAGTTCCATTGAACTTCCAAAAGAATCATCTTCTTTAATTTCTGTTCTCAACGTCGAAAGAGCTCTCCGTGGCATACCTATTACAGATGCAGATCATTATGGTAGACTTGGCTTACCAAGAGGATGTCCATATGACATGGTGCCAATTGCTTATAATAACAAGGTTCGAGAATTGGAGAGTCAAGGTTTAGAGGAAGACATACTTAACAAGAAATTGGAACTTCTCAGAGAATCATACACTATCATGTCATCGCCGGATGAAAGAAGAATGTATGACTGGAGCTTGTCCAGAGAAGATAACACAGACACATACGTTTGGCCATTTGAGGTTGATGTTTCGGTACTTCAAGAAGGAGATCCTCCACCACAGGAACCTGAGGATGTAGGACCAACCAGACTGGTTGGATACTTTCTAGCGGGATGGATACTGCTAGCATTTGTGTTATCAATTGGACTAAACTTATAG

Protein sequence

>Msa0476490

MALSSTTTTTICIPSNNTPSKLGFSTNNIVFSVKQARKLRIRSSSESSAGSTEVESESSIELPKESSSLISVLNVERALRGIPITDADHYGRLGLPRGCPYDMVPIAYNNKVRELESQGLEEDILNKKLELLRESYTIMSSPDERRMYDWSLSREDNTDTYVWPFEVDVSVLQEGDPPPQEPEDVGPTRLVGYFLAGWILLAFVLSIGLNL*