AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1379370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379370 MtrunA17_Chr3g0125821 98.286 175 3 0 1 175 1 175 6.19e-127 353
Msa1379370 MtrunA17_Chr2g0317731 69.167 120 36 1 55 173 54 173 7.53e-62 189
Msa1379370 MtrunA17_Chr8g0360031 63.077 130 48 0 44 173 47 176 4.22e-61 187
Msa1379370 MtrunA17_Chr4g0044731 47.573 103 54 0 73 175 68 170 2.17e-34 119
Msa1379370 MtrunA17_Chr2g0317721 47.222 108 57 0 64 171 35 142 3.18e-32 112
Msa1379370 MtrunA17_Chr2g0317701 39.568 139 81 2 35 170 9 147 1.88e-30 108
Msa1379370 MtrunA17_Chr2g0317711 42.593 108 61 1 64 171 35 141 1.06e-25 95.9
Msa1379370 MtrunA17_Chr1g0211871 39.640 111 55 3 70 175 70 173 1.41e-24 94.4
Msa1379370 MtrunA17_Chr1g0201781 38.144 97 60 0 74 170 66 162 3.95e-22 87.4
Msa1379370 MtrunA17_Chr2g0317691 53.125 64 30 0 110 173 3 66 2.03e-20 80.9
Msa1379370 MtrunA17_Chr5g0404831 39.252 107 60 3 70 173 11 115 4.23e-20 80.9
Msa1379370 MtrunA17_Chr1g0155721 35.780 109 65 3 70 175 9 115 1.04e-17 74.7
Msa1379370 MtrunA17_Chr7g0216481 36.905 84 51 2 89 172 51 132 2.93e-17 73.9
Msa1379370 MtrunA17_Chr3g0142051 34.513 113 69 3 63 172 2 112 4.25e-17 73.2
Msa1379370 MtrunA17_Chr4g0052481 36.275 102 52 4 61 159 64 155 1.11e-15 70.9
Msa1379370 MtrunA17_Chr7g0258871 27.564 156 95 4 15 159 21 169 5.19e-14 66.6
Msa1379370 MtrunA17_Chr8g0393201 38.750 80 47 2 93 172 256 333 6.96e-14 68.2
Msa1379370 MtrunA17_Chr1g0164481 32.558 86 56 1 88 171 94 179 1.12e-12 63.2
Msa1379370 MtrunA17_Chr1g0194961 34.831 89 56 1 66 152 145 233 2.45e-12 63.9
Msa1379370 MtrunA17_Chr5g0438731 40.000 70 42 0 82 151 74 143 7.36e-12 62.8
Msa1379370 MtrunA17_Chr7g0245141 33.803 71 46 1 89 159 49 118 4.28e-11 57.8
Msa1379370 MtrunA17_Chr7g0249461 30.147 136 82 5 29 159 44 171 6.22e-11 58.5
Msa1379370 MtrunA17_Chr8g0334481 31.461 89 57 2 74 159 33 120 9.94e-11 57.0
Msa1379370 MtrunA17_Chr1g0173181 34.409 93 59 1 83 173 422 514 9.98e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379370 AT3G15360.1 58.197 122 48 1 55 173 70 191 8.36e-51 162
Msa1379370 AT1G03680.1 47.020 151 80 0 23 173 29 179 4.42e-50 159
Msa1379370 AT4G03520.1 51.639 122 59 0 52 173 64 185 2.90e-49 157
Msa1379370 AT2G15570.1 52.427 103 49 0 73 175 71 173 1.05e-37 128
Msa1379370 AT2G15570.2 52.427 103 49 0 73 175 72 174 1.08e-37 128
Msa1379370 AT4G03520.2 54.930 71 32 0 103 173 1 71 9.94e-27 97.1
Msa1379370 AT1G76760.1 35.606 132 79 2 39 170 40 165 3.71e-23 90.5
Msa1379370 AT1G43560.1 39.175 97 59 0 74 170 64 160 7.33e-23 89.7
Msa1379370 AT1G50320.1 31.852 135 78 4 46 175 49 174 2.64e-19 80.9
Msa1379370 AT3G51030.1 36.842 114 67 3 63 173 2 113 1.05e-18 77.4
Msa1379370 AT1G19730.1 34.513 113 70 2 63 172 2 113 1.39e-18 77.4
Msa1379370 AT5G42980.1 37.500 88 53 2 85 172 26 111 6.55e-17 73.2
Msa1379370 AT2G35010.2 34.568 162 88 7 8 159 27 180 1.18e-16 74.3
Msa1379370 AT2G35010.1 34.568 162 88 7 8 159 27 180 1.18e-16 74.3
Msa1379370 AT4G12170.1 36.538 104 65 1 70 173 51 153 2.72e-16 72.4
Msa1379370 AT1G52990.1 42.391 92 51 2 83 173 223 313 8.71e-16 73.6
Msa1379370 AT5G39950.1 39.759 83 48 2 89 171 50 130 1.68e-15 69.7
Msa1379370 AT1G45145.1 35.294 85 51 2 78 159 16 99 7.07e-14 65.1
Msa1379370 AT1G31020.1 41.096 73 40 2 88 158 73 144 1.07e-13 65.5
Msa1379370 AT3G54960.2 30.097 103 71 1 69 171 100 201 1.16e-11 62.8
Msa1379370 AT3G54960.1 30.097 103 71 1 69 171 100 201 1.22e-11 62.4
Msa1379370 AT1G21750.2 37.975 79 47 1 70 146 376 454 2.70e-11 61.6
Msa1379370 AT1G21750.1 37.975 79 47 1 70 146 376 454 3.30e-11 61.2
Msa1379370 AT1G59730.1 30.108 93 63 2 80 172 37 127 3.68e-11 58.2
Msa1379370 AT2G32920.1 36.111 72 46 0 76 147 170 241 3.98e-11 60.8
Msa1379370 AT3G06730.1 29.885 87 59 1 86 170 94 180 4.18e-11 59.3
Msa1379370 AT5G16400.1 36.538 104 53 5 65 159 71 170 9.97e-11 58.2

Find 62 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTGGTTCTTGGAATTT+TGG 0.097044 tig0020278:-118960 Msa1379370:five_prime_UTR
AAGGATTATCTTTCAATATA+TGG 0.206443 tig0020278:-117112 Msa1379370:three_prime_UTR
TAAAACTCATTTCTGGTTCT+TGG 0.214172 tig0020278:-118968 Msa1379370:five_prime_UTR
AAATGTGTAAAACTCATTTC+TGG 0.220442 tig0020278:-118975 Msa1379370:five_prime_UTR
GATAAACAGACCTCCTTCTT+TGG 0.252476 tig0020278:-117023 Msa1379370:three_prime_UTR
CCTTAAAATCGATGATTGTT+TGG 0.302028 tig0020278:-116990 Msa1379370:three_prime_UTR
TTGGCTAGCTCATCAATAAT+AGG 0.304078 tig0020278:+117486 Msa1379360:three_prime_UTR
CCGTACTTTGTTGCTATGTT+TGG 0.325721 tig0020278:+117414 Msa1379360:three_prime_UTR
CTCCATTGTTTCCAACTTCA+AGG 0.326814 tig0020278:-118623 Msa1379370:CDS
TTCTTCTACTCAATAGTTTG+TGG 0.358508 tig0020278:+118719 Msa1379360:three_prime_UTR
CAACAACCAGTTACTATTGT+AGG 0.369089 tig0020278:-116946 None:intergenic
ATCTTTATCATATCTATGTA+AGG 0.391983 tig0020278:-117131 Msa1379370:three_prime_UTR
GTTTCCAACTTCAAGGGAAA+AGG 0.418825 tig0020278:-118616 Msa1379370:CDS
TACAATAGTAACTGGTTGTT+GGG 0.430595 tig0020278:+116948 Msa1379360:three_prime_UTR
AGGGCACGCGAGAAGGCAGC+AGG 0.442255 tig0020278:-119049 Msa1379370:five_prime_UTR
ACAAAGTAGCAACATGGCTT+TGG 0.442578 tig0020278:-118688 Msa1379370:exon
ACGCGAGAAGGCAGCAGGGT+GGG 0.451192 tig0020278:-119044 Msa1379370:five_prime_UTR
CTACAATAGTAACTGGTTGT+TGG 0.470232 tig0020278:+116947 Msa1379360:three_prime_UTR
AGTTTGTGGAAAGTGCACTA+TGG 0.478079 tig0020278:+118733 Msa1379360:three_prime_UTR
TGGAGGAAGACACTGAGGTC+TGG 0.484266 tig0020278:+118641 Msa1379360:three_prime_UTR
CACCATGGTGTGGTCCATGC+AGG 0.487978 tig0020278:-117518 Msa1379370:CDS
TCCATGCCCTGCAAGGCAAA+AGG 0.493517 tig0020278:-117162 Msa1379370:three_prime_UTR
TTGCAGGGCATGGAAAAGAA+TGG 0.497539 tig0020278:+117171 Msa1379360:three_prime_UTR
CGGATTATATAATCCGGACC+AGG 0.512529 tig0020278:-119092 None:intergenic
AACAACCAGTTACTATTGTA+GGG 0.513311 tig0020278:-116945 None:intergenic
TTTCTGTAGGCAACACCAGA+TGG 0.513750 tig0020278:+118531 Msa1379360:three_prime_UTR
TGCAGGGCATGGAAAAGAAT+GGG 0.514634 tig0020278:+117172 Msa1379360:three_prime_UTR
TGCAAGTGAAACCCCTGTGC+TGG 0.515943 tig0020278:-117553 Msa1379370:CDS
CTGGTCCGGATTATATAATC+CGG 0.516081 tig0020278:-119098 None:intergenic
GAGCAGTGACTGACTCAAGC+TGG 0.516226 tig0020278:-117590 Msa1379370:CDS
TCCCTTGAAGTTGGAAACAA+TGG 0.517273 tig0020278:+118621 Msa1379360:three_prime_UTR
GTGTTCTCAGCTCAAAGAGC+AGG 0.522900 tig0020278:-118591 Msa1379370:CDS
TCCATTGTTTCCAACTTCAA+GGG 0.526913 tig0020278:-118622 Msa1379370:CDS
GAGCTAGCCAAAGAATATGC+TGG 0.527432 tig0020278:-117474 Msa1379370:CDS
TTGAAATAAAGTAATATACA+AGG 0.529581 tig0020278:+117070 Msa1379360:three_prime_UTR
TGGATAAGCTTCTAGTGTTG+TGG 0.530759 tig0020278:+118770 Msa1379360:three_prime_UTR
TCAACACTATCATTCCCATC+TGG 0.532444 tig0020278:-118546 Msa1379370:CDS
GTTGTAGACAGAGTAGACTT+TGG 0.532653 tig0020278:+117321 Msa1379360:three_prime_UTR
CCAAACATAGCAACAAAGTA+CGG 0.542679 tig0020278:-117414 Msa1379370:CDS
AGGTAATCAACATCCAAAGA+AGG 0.551600 tig0020278:+117010 Msa1379360:three_prime_UTR
GCTCGTGAAGCTGTAAATGA+AGG 0.553122 tig0020278:-118489 Msa1379370:intron
GTCTACTCTGTCTACAACTG+TGG 0.556776 tig0020278:-117316 Msa1379370:CDS
GGGTTTCACTTGCAAGAACA+AGG 0.564621 tig0020278:+117562 Msa1379360:three_prime_UTR
TAGATTGTGAGGTTCTAAGA+AGG 0.564721 tig0020278:+118859 Msa1379360:three_prime_UTR
GGATATTATTATAGATTGTG+AGG 0.572535 tig0020278:+118848 Msa1379360:three_prime_UTR
AAGACACTGAGGTCTGGCTG+TGG 0.576209 tig0020278:+118647 Msa1379360:three_prime_UTR
TTCTGTAGGCAACACCAGAT+GGG 0.579739 tig0020278:+118532 Msa1379360:three_prime_UTR
ATAAGCTTCTAGTGTTGTGG+TGG 0.584014 tig0020278:+118773 Msa1379360:three_prime_UTR
TGTGTGTATGTGTTTGCAAG+TGG 0.593815 tig0020278:+118827 Msa1379360:three_prime_UTR
CACGCGAGAAGGCAGCAGGG+TGG 0.601428 tig0020278:-119045 Msa1379370:five_prime_UTR
CTTGAAGTTGGAAACAATGG+AGG 0.602873 tig0020278:+118624 Msa1379360:three_prime_UTR
ATAGGCGCTATCATCCTGCA+TGG 0.617910 tig0020278:+117504 Msa1379360:three_prime_UTR
GGGCACGCGAGAAGGCAGCA+GGG 0.644404 tig0020278:-119048 Msa1379370:five_prime_UTR
TAATCAACATCCAAAGAAGG+AGG 0.649027 tig0020278:+117013 Msa1379360:three_prime_UTR
GGATTATATAATCCGGACCA+GGG 0.654487 tig0020278:-119091 None:intergenic
GAAGGCTCGAATTCATGTGG+TGG 0.662721 tig0020278:+118877 Msa1379360:three_prime_UTR
GATTATATAATCCGGACCAG+GGG 0.664930 tig0020278:-119090 Msa1379370:five_prime_UTR
TAAGAAGGCTCGAATTCATG+TGG 0.669801 tig0020278:+118874 Msa1379360:three_prime_UTR
TTACACACAAAGTAGCAACA+TGG 0.681780 tig0020278:-118694 Msa1379370:exon
ATCCTGCATGGACCACACCA+TGG 0.683330 tig0020278:+117516 Msa1379360:three_prime_UTR
AACAATGGAGGAAGACACTG+AGG 0.723169 tig0020278:+118636 Msa1379360:three_prime_UTR
TTAGTGGGACAAAAGCAGAG+AGG 0.733816 tig0020278:-118920 Msa1379370:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATAAAGTAATATACA+AGG + tig0020278:118967-118986 Msa1379360:three_prime_UTR 15.0%
!! TTGAAATAAAGTAATATACA+AGG + tig0020278:118967-118986 Msa1379360:three_prime_UTR 15.0%
!! AAAGACTCATAACAAAATAT+AGG + tig0020278:117650-117669 Msa1379360:intron 20.0%
!!! GAGCTTATTTAAGATATTTT+CGG - tig0020278:117817-117836 Msa1379370:intron 20.0%
!! TCAATTATAATGTGAAGATA+AGG + tig0020278:117999-118018 Msa1379360:intron 20.0%
!! AAAATTCAGAATACATTACA+AGG + tig0020278:118150-118169 Msa1379360:intron 20.0%
!!! TGAATTTTATTTTCTCATTG+AGG - tig0020278:118162-118181 Msa1379370:intron 20.0%
!! ATCTTTATCATATCTATGTA+AGG - tig0020278:118903-118922 Msa1379370:five_prime_UTR 20.0%
!! AAGGATTATCTTTCAATATA+TGG - tig0020278:118922-118941 Msa1379370:five_prime_UTR 20.0%
!!! CATTTTGTAAAGTTTTACAT+TGG - tig0020278:118989-119008 Msa1379370:five_prime_UTR 20.0%
!! AAAGACTCATAACAAAATAT+AGG + tig0020278:117650-117669 Msa1379360:intron 20.0%
!!! GAGCTTATTTAAGATATTTT+CGG - tig0020278:117817-117836 Msa1379370:intron 20.0%
!! TCAATTATAATGTGAAGATA+AGG + tig0020278:117999-118018 Msa1379360:intron 20.0%
!! AAAATTCAGAATACATTACA+AGG + tig0020278:118150-118169 Msa1379360:intron 20.0%
!!! TGAATTTTATTTTCTCATTG+AGG - tig0020278:118162-118181 Msa1379370:intron 20.0%
!! ATCTTTATCATATCTATGTA+AGG - tig0020278:118903-118922 Msa1379370:five_prime_UTR 20.0%
!! AAGGATTATCTTTCAATATA+TGG - tig0020278:118922-118941 Msa1379370:five_prime_UTR 20.0%
!!! CATTTTGTAAAGTTTTACAT+TGG - tig0020278:118989-119008 Msa1379370:five_prime_UTR 20.0%
!!! GTATTTTTGGATATTTTGCA+GGG - tig0020278:116966-116985 Msa1379370:three_prime_UTR 25.0%
!! TTTTCTTCTTCTTAATTGAG+AGG + tig0020278:117040-117059 Msa1379360:three_prime_UTR 25.0%
! AAATGTGTAAAACTCATTTC+TGG - tig0020278:117059-117078 Msa1379370:three_prime_UTR 25.0%
! GGATATTATTATAGATTGTG+AGG + tig0020278:117189-117208 Msa1379360:three_prime_UTR 25.0%
!! AATAAAACGAGATTTTCTGT+AGG + tig0020278:117519-117538 Msa1379360:three_prime_UTR 25.0%
!!! CATTAAGTTTTAACCTGTTT+AGG + tig0020278:118058-118077 Msa1379360:intron 25.0%
!! CAAATTAACTTTTGCATGTT+TGG + tig0020278:118353-118372 Msa1379360:intron 25.0%
!! AATTTTTCCAGCATATTCTT+TGG + tig0020278:118570-118589 Msa1379360:three_prime_UTR 25.0%
! TTCTTGAAAAATAGAACAGT+TGG + tig0020278:118659-118678 Msa1379360:three_prime_UTR 25.0%
!!! ACTGTTCTATTTTTCAAGAA+TGG - tig0020278:118659-118678 Msa1379370:CDS 25.0%
!! GAGAAAAAAGAAAGTGTAAT+TGG - tig0020278:118683-118702 Msa1379370:exon 25.0%
! ATGCATTATAACACCAAAAA+TGG - tig0020278:118787-118806 Msa1379370:five_prime_UTR 25.0%
!!! GTATTTTTGGATATTTTGCA+GGG - tig0020278:116966-116985 Msa1379370:three_prime_UTR 25.0%
!! TTTTCTTCTTCTTAATTGAG+AGG + tig0020278:117040-117059 Msa1379360:three_prime_UTR 25.0%
! AAATGTGTAAAACTCATTTC+TGG - tig0020278:117059-117078 Msa1379370:three_prime_UTR 25.0%
! GGATATTATTATAGATTGTG+AGG + tig0020278:117189-117208 Msa1379360:three_prime_UTR 25.0%
!! AATAAAACGAGATTTTCTGT+AGG + tig0020278:117519-117538 Msa1379360:three_prime_UTR 25.0%
!!! CATTAAGTTTTAACCTGTTT+AGG + tig0020278:118058-118077 Msa1379360:intron 25.0%
!! CAAATTAACTTTTGCATGTT+TGG + tig0020278:118353-118372 Msa1379360:intron 25.0%
!! AATTTTTCCAGCATATTCTT+TGG + tig0020278:118570-118589 Msa1379360:three_prime_UTR 25.0%
! TTCTTGAAAAATAGAACAGT+TGG + tig0020278:118659-118678 Msa1379360:three_prime_UTR 25.0%
!!! ACTGTTCTATTTTTCAAGAA+TGG - tig0020278:118659-118678 Msa1379370:CDS 25.0%
!! GAGAAAAAAGAAAGTGTAAT+TGG - tig0020278:118683-118702 Msa1379370:exon 25.0%
! ATGCATTATAACACCAAAAA+TGG - tig0020278:118787-118806 Msa1379370:five_prime_UTR 25.0%
AAAATATCCAAAAATACCCC+TGG + tig0020278:116963-116982 Msa1379360:three_prime_UTR 30.0%
!!! GGTATTTTTGGATATTTTGC+AGG - tig0020278:116965-116984 Msa1379370:three_prime_UTR 30.0%
!! TAAAACTCATTTCTGGTTCT+TGG - tig0020278:117066-117085 Msa1379370:three_prime_UTR 30.0%
!!! ATTTCTGGTTCTTGGAATTT+TGG - tig0020278:117074-117093 Msa1379370:three_prime_UTR 30.0%
!!! GTGGTGGTTTTTAATTTGTT+TGG + tig0020278:117248-117267 Msa1379360:three_prime_UTR 30.0%
TTCTTCTACTCAATAGTTTG+TGG + tig0020278:117318-117337 Msa1379360:three_prime_UTR 30.0%
TTCAAGAAAAACAGTTCACA+AGG + tig0020278:117585-117604 Msa1379360:three_prime_UTR 30.0%
! GGTTATAAACACTCATTTTC+AGG + tig0020278:117724-117743 Msa1379360:intron 30.0%
! ACATTTTTCGTCTTACAAGT+TGG - tig0020278:117749-117768 Msa1379370:intron 30.0%
TGAAACCTTAAGATAGTTTG+TGG - tig0020278:117962-117981 Msa1379370:intron 30.0%
TTTAGTCATCACTTACAAGA+TGG + tig0020278:118108-118127 Msa1379360:intron 30.0%
! TAAATGCATGTATGGATTGA+CGG - tig0020278:118220-118239 Msa1379370:intron 30.0%
!! TGCAAAAGTTAATTTGCCTT+AGG - tig0020278:118357-118376 Msa1379370:intron 30.0%
CACTATAGTGAATAAACCTA+AGG + tig0020278:118376-118395 Msa1379360:intron 30.0%
!!! CCAAACAATCATCGATTTTA+AGG + tig0020278:119047-119066 Msa1379360:three_prime_UTR 30.0%
CCTTAAAATCGATGATTGTT+TGG - tig0020278:119044-119063 Msa1379370:five_prime_UTR 30.0%
TACAATAGTAACTGGTTGTT+GGG + tig0020278:119089-119108 Msa1379360:three_prime_UTR 30.0%
AAAATATCCAAAAATACCCC+TGG + tig0020278:116963-116982 Msa1379360:three_prime_UTR 30.0%
!!! GGTATTTTTGGATATTTTGC+AGG - tig0020278:116965-116984 Msa1379370:three_prime_UTR 30.0%
!! TAAAACTCATTTCTGGTTCT+TGG - tig0020278:117066-117085 Msa1379370:three_prime_UTR 30.0%
!!! ATTTCTGGTTCTTGGAATTT+TGG - tig0020278:117074-117093 Msa1379370:three_prime_UTR 30.0%
!!! GTGGTGGTTTTTAATTTGTT+TGG + tig0020278:117248-117267 Msa1379360:three_prime_UTR 30.0%
TTCTTCTACTCAATAGTTTG+TGG + tig0020278:117318-117337 Msa1379360:three_prime_UTR 30.0%
TTCAAGAAAAACAGTTCACA+AGG + tig0020278:117585-117604 Msa1379360:three_prime_UTR 30.0%
! GGTTATAAACACTCATTTTC+AGG + tig0020278:117724-117743 Msa1379360:intron 30.0%
! ACATTTTTCGTCTTACAAGT+TGG - tig0020278:117749-117768 Msa1379370:intron 30.0%
TGAAACCTTAAGATAGTTTG+TGG - tig0020278:117962-117981 Msa1379370:intron 30.0%
TTTAGTCATCACTTACAAGA+TGG + tig0020278:118108-118127 Msa1379360:intron 30.0%
! TAAATGCATGTATGGATTGA+CGG - tig0020278:118220-118239 Msa1379370:intron 30.0%
!! TGCAAAAGTTAATTTGCCTT+AGG - tig0020278:118357-118376 Msa1379370:intron 30.0%
CACTATAGTGAATAAACCTA+AGG + tig0020278:118376-118395 Msa1379360:intron 30.0%
!!! CCAAACAATCATCGATTTTA+AGG + tig0020278:119047-119066 Msa1379360:three_prime_UTR 30.0%
CCTTAAAATCGATGATTGTT+TGG - tig0020278:119044-119063 Msa1379370:five_prime_UTR 30.0%
TACAATAGTAACTGGTTGTT+GGG + tig0020278:119089-119108 Msa1379360:three_prime_UTR 30.0%
!!! TGATGTGTACCACTTTTTAG+TGG - tig0020278:117098-117117 Msa1379370:three_prime_UTR 35.0%
!!! GATGTGTACCACTTTTTAGT+GGG - tig0020278:117099-117118 Msa1379370:three_prime_UTR 35.0%
!! TAGATTGTGAGGTTCTAAGA+AGG + tig0020278:117178-117197 Msa1379360:three_prime_UTR 35.0%
TTACACACAAAGTAGCAACA+TGG - tig0020278:117340-117359 Msa1379370:CDS 35.0%
TCCATTGTTTCCAACTTCAA+GGG - tig0020278:117412-117431 Msa1379370:CDS 35.0%
TCTAGCCACAAACTATCTTA+AGG + tig0020278:117970-117989 Msa1379360:intron 35.0%
TGAACTTAATTTCCACAGCT+AGG - tig0020278:118016-118035 Msa1379370:intron 35.0%
GAACTTAATTTCCACAGCTA+GGG - tig0020278:118017-118036 Msa1379370:intron 35.0%
AACTTAATTTCCACAGCTAG+GGG - tig0020278:118018-118037 Msa1379370:intron 35.0%
GAATACATTACAAGGAAACC+AGG + tig0020278:118142-118161 Msa1379360:intron 35.0%
TTGAGCATAAGAGAGGATTT+AGG - tig0020278:118186-118205 Msa1379370:intron 35.0%
AGCACTTCTAAATGCATGTA+TGG - tig0020278:118212-118231 Msa1379370:intron 35.0%
! ACTCTGTGTCAATGTGATTT+TGG - tig0020278:118262-118281 Msa1379370:intron 35.0%
TTTGGATTGACTGTGAGTAT+GGG + tig0020278:118335-118354 Msa1379360:intron 35.0%
AACACATACATGCTCAAACT+TGG - tig0020278:118415-118434 Msa1379370:intron 35.0%
! TTGGCTAGCTCATCAATAAT+AGG + tig0020278:118551-118570 Msa1379360:three_prime_UTR 35.0%
CCAAACATAGCAACAAAGTA+CGG - tig0020278:118620-118639 Msa1379370:CDS 35.0%
AACACCAAAAATGGATGAAC+TGG - tig0020278:118796-118815 Msa1379370:five_prime_UTR 35.0%
ACACCAAAAATGGATGAACT+GGG - tig0020278:118797-118816 Msa1379370:five_prime_UTR 35.0%
! AATCCCAGTTCATCCATTTT+TGG + tig0020278:118803-118822 Msa1379360:three_prime_UTR 35.0%
TAATCAACATCCAAAGAAGG+AGG + tig0020278:119024-119043 Msa1379360:three_prime_UTR 35.0%
AGGTAATCAACATCCAAAGA+AGG + tig0020278:119027-119046 Msa1379360:three_prime_UTR 35.0%
CTACAATAGTAACTGGTTGT+TGG + tig0020278:119090-119109 Msa1379360:three_prime_UTR 35.0%
!!! TGATGTGTACCACTTTTTAG+TGG - tig0020278:117098-117117 Msa1379370:three_prime_UTR 35.0%
!!! GATGTGTACCACTTTTTAGT+GGG - tig0020278:117099-117118 Msa1379370:three_prime_UTR 35.0%
!! TAGATTGTGAGGTTCTAAGA+AGG + tig0020278:117178-117197 Msa1379360:three_prime_UTR 35.0%
TTACACACAAAGTAGCAACA+TGG - tig0020278:117340-117359 Msa1379370:CDS 35.0%
TCCATTGTTTCCAACTTCAA+GGG - tig0020278:117412-117431 Msa1379370:CDS 35.0%
TCTAGCCACAAACTATCTTA+AGG + tig0020278:117970-117989 Msa1379360:intron 35.0%
TGAACTTAATTTCCACAGCT+AGG - tig0020278:118016-118035 Msa1379370:intron 35.0%
GAACTTAATTTCCACAGCTA+GGG - tig0020278:118017-118036 Msa1379370:intron 35.0%
AACTTAATTTCCACAGCTAG+GGG - tig0020278:118018-118037 Msa1379370:intron 35.0%
GAATACATTACAAGGAAACC+AGG + tig0020278:118142-118161 Msa1379360:intron 35.0%
TTGAGCATAAGAGAGGATTT+AGG - tig0020278:118186-118205 Msa1379370:intron 35.0%
AGCACTTCTAAATGCATGTA+TGG - tig0020278:118212-118231 Msa1379370:intron 35.0%
! ACTCTGTGTCAATGTGATTT+TGG - tig0020278:118262-118281 Msa1379370:intron 35.0%
TTTGGATTGACTGTGAGTAT+GGG + tig0020278:118335-118354 Msa1379360:intron 35.0%
AACACATACATGCTCAAACT+TGG - tig0020278:118415-118434 Msa1379370:intron 35.0%
! TTGGCTAGCTCATCAATAAT+AGG + tig0020278:118551-118570 Msa1379360:three_prime_UTR 35.0%
CCAAACATAGCAACAAAGTA+CGG - tig0020278:118620-118639 Msa1379370:CDS 35.0%
AACACCAAAAATGGATGAAC+TGG - tig0020278:118796-118815 Msa1379370:five_prime_UTR 35.0%
ACACCAAAAATGGATGAACT+GGG - tig0020278:118797-118816 Msa1379370:five_prime_UTR 35.0%
! AATCCCAGTTCATCCATTTT+TGG + tig0020278:118803-118822 Msa1379360:three_prime_UTR 35.0%
TAATCAACATCCAAAGAAGG+AGG + tig0020278:119024-119043 Msa1379360:three_prime_UTR 35.0%
AGGTAATCAACATCCAAAGA+AGG + tig0020278:119027-119046 Msa1379360:three_prime_UTR 35.0%
CTACAATAGTAACTGGTTGT+TGG + tig0020278:119090-119109 Msa1379360:three_prime_UTR 35.0%
! GCTTTTGTCCCACTAAAAAG+TGG + tig0020278:117110-117129 Msa1379360:three_prime_UTR 40.0%
TAAGAAGGCTCGAATTCATG+TGG + tig0020278:117163-117182 Msa1379360:three_prime_UTR 40.0%
TGTGTGTATGTGTTTGCAAG+TGG + tig0020278:117210-117229 Msa1379360:three_prime_UTR 40.0%
ATAAGCTTCTAGTGTTGTGG+TGG + tig0020278:117264-117283 Msa1379360:three_prime_UTR 40.0%
TGGATAAGCTTCTAGTGTTG+TGG + tig0020278:117267-117286 Msa1379360:three_prime_UTR 40.0%
!! CTATGGTTTTTCAGCACTTG+TGG + tig0020278:117287-117306 Msa1379360:three_prime_UTR 40.0%
! AGTTTGTGGAAAGTGCACTA+TGG + tig0020278:117304-117323 Msa1379360:three_prime_UTR 40.0%
ACAAAGTAGCAACATGGCTT+TGG - tig0020278:117346-117365 Msa1379370:CDS 40.0%
CTTGAAGTTGGAAACAATGG+AGG + tig0020278:117413-117432 Msa1379360:three_prime_UTR 40.0%
CTCCATTGTTTCCAACTTCA+AGG - tig0020278:117411-117430 Msa1379370:CDS 40.0%
TCCCTTGAAGTTGGAAACAA+TGG + tig0020278:117416-117435 Msa1379360:three_prime_UTR 40.0%
GTTTCCAACTTCAAGGGAAA+AGG - tig0020278:117418-117437 Msa1379370:CDS 40.0%
! ACAACCTTTTCCCTTGAAGT+TGG + tig0020278:117425-117444 Msa1379360:three_prime_UTR 40.0%
TCAACACTATCATTCCCATC+TGG - tig0020278:117488-117507 Msa1379370:CDS 40.0%
GTAAGACGAAAAATGTCTGC+AGG + tig0020278:117745-117764 Msa1379360:intron 40.0%
AACCACATCTCATCCAATGT+GGG + tig0020278:117890-117909 Msa1379360:intron 40.0%
AAACCACATCTCATCCAATG+TGG + tig0020278:117891-117910 Msa1379360:intron 40.0%
CTTGGGAAGAATTCCTAAAC+AGG - tig0020278:118042-118061 Msa1379370:intron 40.0%
TTGAGGATTGAGCATAAGAG+AGG - tig0020278:118179-118198 Msa1379370:intron 40.0%
! ATGTATGGATTGACGGTAGT+AGG - tig0020278:118227-118246 Msa1379370:intron 40.0%
TTGGATTGACTGTGAGTATG+GGG + tig0020278:118334-118353 Msa1379360:intron 40.0%
GTTTGGATTGACTGTGAGTA+TGG + tig0020278:118336-118355 Msa1379360:intron 40.0%
CCGTACTTTGTTGCTATGTT+TGG + tig0020278:118623-118642 Msa1379360:three_prime_UTR 40.0%
GTTGTAGACAGAGTAGACTT+TGG + tig0020278:118716-118735 Msa1379360:three_prime_UTR 40.0%
! AAACTACCTTTTGCCTTGCA+GGG + tig0020278:118881-118900 Msa1379360:three_prime_UTR 40.0%
GATAAACAGACCTCCTTCTT+TGG - tig0020278:119011-119030 Msa1379370:five_prime_UTR 40.0%
! GCTTTTGTCCCACTAAAAAG+TGG + tig0020278:117110-117129 Msa1379360:three_prime_UTR 40.0%
TAAGAAGGCTCGAATTCATG+TGG + tig0020278:117163-117182 Msa1379360:three_prime_UTR 40.0%
TGTGTGTATGTGTTTGCAAG+TGG + tig0020278:117210-117229 Msa1379360:three_prime_UTR 40.0%
ATAAGCTTCTAGTGTTGTGG+TGG + tig0020278:117264-117283 Msa1379360:three_prime_UTR 40.0%
TGGATAAGCTTCTAGTGTTG+TGG + tig0020278:117267-117286 Msa1379360:three_prime_UTR 40.0%
!! CTATGGTTTTTCAGCACTTG+TGG + tig0020278:117287-117306 Msa1379360:three_prime_UTR 40.0%
! AGTTTGTGGAAAGTGCACTA+TGG + tig0020278:117304-117323 Msa1379360:three_prime_UTR 40.0%
ACAAAGTAGCAACATGGCTT+TGG - tig0020278:117346-117365 Msa1379370:CDS 40.0%
CTTGAAGTTGGAAACAATGG+AGG + tig0020278:117413-117432 Msa1379360:three_prime_UTR 40.0%
CTCCATTGTTTCCAACTTCA+AGG - tig0020278:117411-117430 Msa1379370:CDS 40.0%
TCCCTTGAAGTTGGAAACAA+TGG + tig0020278:117416-117435 Msa1379360:three_prime_UTR 40.0%
GTTTCCAACTTCAAGGGAAA+AGG - tig0020278:117418-117437 Msa1379370:CDS 40.0%
! ACAACCTTTTCCCTTGAAGT+TGG + tig0020278:117425-117444 Msa1379360:three_prime_UTR 40.0%
TCAACACTATCATTCCCATC+TGG - tig0020278:117488-117507 Msa1379370:CDS 40.0%
GTAAGACGAAAAATGTCTGC+AGG + tig0020278:117745-117764 Msa1379360:intron 40.0%
AACCACATCTCATCCAATGT+GGG + tig0020278:117890-117909 Msa1379360:intron 40.0%
AAACCACATCTCATCCAATG+TGG + tig0020278:117891-117910 Msa1379360:intron 40.0%
CTTGGGAAGAATTCCTAAAC+AGG - tig0020278:118042-118061 Msa1379370:intron 40.0%
TTGAGGATTGAGCATAAGAG+AGG - tig0020278:118179-118198 Msa1379370:intron 40.0%
! ATGTATGGATTGACGGTAGT+AGG - tig0020278:118227-118246 Msa1379370:intron 40.0%
TTGGATTGACTGTGAGTATG+GGG + tig0020278:118334-118353 Msa1379360:intron 40.0%
GTTTGGATTGACTGTGAGTA+TGG + tig0020278:118336-118355 Msa1379360:intron 40.0%
CCGTACTTTGTTGCTATGTT+TGG + tig0020278:118623-118642 Msa1379360:three_prime_UTR 40.0%
GTTGTAGACAGAGTAGACTT+TGG + tig0020278:118716-118735 Msa1379360:three_prime_UTR 40.0%
! AAACTACCTTTTGCCTTGCA+GGG + tig0020278:118881-118900 Msa1379360:three_prime_UTR 40.0%
GATAAACAGACCTCCTTCTT+TGG - tig0020278:119011-119030 Msa1379370:five_prime_UTR 40.0%
ATCCAAAAATACCCCTGGTC+CGG + tig0020278:116958-116977 Msa1379360:three_prime_UTR 45.0%
TTAGTGGGACAAAAGCAGAG+AGG - tig0020278:117114-117133 Msa1379370:three_prime_UTR 45.0%
AACAATGGAGGAAGACACTG+AGG + tig0020278:117401-117420 Msa1379360:three_prime_UTR 45.0%
TTCTGTAGGCAACACCAGAT+GGG + tig0020278:117505-117524 Msa1379360:three_prime_UTR 45.0%
TTTCTGTAGGCAACACCAGA+TGG + tig0020278:117506-117525 Msa1379360:three_prime_UTR 45.0%
GCTCGTGAAGCTGTAAATGA+AGG - tig0020278:117545-117564 Msa1379370:CDS 45.0%
CTCATCCAATGTGGGATTCT+TGG + tig0020278:117882-117901 Msa1379360:intron 45.0%
ATCCCACATTGGATGAGATG+TGG - tig0020278:117885-117904 Msa1379370:intron 45.0%
GACTAAACATGCTTGCTTCC+TGG - tig0020278:118121-118140 Msa1379370:intron 45.0%
TGGATTGACGGTAGTAGGTT+AGG - tig0020278:118232-118251 Msa1379370:intron 45.0%
CTGTGAGTATGGGGGAATTA+TGG + tig0020278:118325-118344 Msa1379360:intron 45.0%
TGGATTGACTGTGAGTATGG+GGG + tig0020278:118333-118352 Msa1379360:intron 45.0%
ACATGCTCAAACTTGGCAGT+TGG - tig0020278:118422-118441 Msa1379370:intron 45.0%
GGGTTTCACTTGCAAGAACA+AGG + tig0020278:118475-118494 Msa1379360:intron 45.0%
CCAAAAATCTACCAGCACAG+GGG + tig0020278:118495-118514 Msa1379360:three_prime_UTR 45.0%
CCCAAAAATCTACCAGCACA+GGG + tig0020278:118496-118515 Msa1379360:three_prime_UTR 45.0%
!! CCCTGTGCTGGTAGATTTTT+GGG - tig0020278:118493-118512 Msa1379370:CDS 45.0%
!! TGGTAGATTTTTGGGCACCA+TGG - tig0020278:118501-118520 Msa1379370:CDS 45.0%
GAGCTAGCCAAAGAATATGC+TGG - tig0020278:118560-118579 Msa1379370:CDS 45.0%
GTCTACTCTGTCTACAACTG+TGG - tig0020278:118718-118737 Msa1379370:five_prime_UTR 45.0%
TGCAGGGCATGGAAAAGAAT+GGG + tig0020278:118865-118884 Msa1379360:three_prime_UTR 45.0%
TTGCAGGGCATGGAAAAGAA+TGG + tig0020278:118866-118885 Msa1379360:three_prime_UTR 45.0%
! ATTCTTTTCCATGCCCTGCA+AGG - tig0020278:118865-118884 Msa1379370:five_prime_UTR 45.0%
! CAAACTACCTTTTGCCTTGC+AGG + tig0020278:118882-118901 Msa1379360:three_prime_UTR 45.0%
ATCCAAAAATACCCCTGGTC+CGG + tig0020278:116958-116977 Msa1379360:three_prime_UTR 45.0%
TTAGTGGGACAAAAGCAGAG+AGG - tig0020278:117114-117133 Msa1379370:three_prime_UTR 45.0%
AACAATGGAGGAAGACACTG+AGG + tig0020278:117401-117420 Msa1379360:three_prime_UTR 45.0%
TTCTGTAGGCAACACCAGAT+GGG + tig0020278:117505-117524 Msa1379360:three_prime_UTR 45.0%
TTTCTGTAGGCAACACCAGA+TGG + tig0020278:117506-117525 Msa1379360:three_prime_UTR 45.0%
GCTCGTGAAGCTGTAAATGA+AGG - tig0020278:117545-117564 Msa1379370:CDS 45.0%
CTCATCCAATGTGGGATTCT+TGG + tig0020278:117882-117901 Msa1379360:intron 45.0%
ATCCCACATTGGATGAGATG+TGG - tig0020278:117885-117904 Msa1379370:intron 45.0%
GACTAAACATGCTTGCTTCC+TGG - tig0020278:118121-118140 Msa1379370:intron 45.0%
TGGATTGACGGTAGTAGGTT+AGG - tig0020278:118232-118251 Msa1379370:intron 45.0%
CTGTGAGTATGGGGGAATTA+TGG + tig0020278:118325-118344 Msa1379360:intron 45.0%
TGGATTGACTGTGAGTATGG+GGG + tig0020278:118333-118352 Msa1379360:intron 45.0%
ACATGCTCAAACTTGGCAGT+TGG - tig0020278:118422-118441 Msa1379370:intron 45.0%
GGGTTTCACTTGCAAGAACA+AGG + tig0020278:118475-118494 Msa1379360:intron 45.0%
CCAAAAATCTACCAGCACAG+GGG + tig0020278:118495-118514 Msa1379360:three_prime_UTR 45.0%
CCCAAAAATCTACCAGCACA+GGG + tig0020278:118496-118515 Msa1379360:three_prime_UTR 45.0%
!! CCCTGTGCTGGTAGATTTTT+GGG - tig0020278:118493-118512 Msa1379370:CDS 45.0%
!! TGGTAGATTTTTGGGCACCA+TGG - tig0020278:118501-118520 Msa1379370:CDS 45.0%
GAGCTAGCCAAAGAATATGC+TGG - tig0020278:118560-118579 Msa1379370:CDS 45.0%
GTCTACTCTGTCTACAACTG+TGG - tig0020278:118718-118737 Msa1379370:five_prime_UTR 45.0%
TGCAGGGCATGGAAAAGAAT+GGG + tig0020278:118865-118884 Msa1379360:three_prime_UTR 45.0%
TTGCAGGGCATGGAAAAGAA+TGG + tig0020278:118866-118885 Msa1379360:three_prime_UTR 45.0%
! ATTCTTTTCCATGCCCTGCA+AGG - tig0020278:118865-118884 Msa1379370:five_prime_UTR 45.0%
! CAAACTACCTTTTGCCTTGC+AGG + tig0020278:118882-118901 Msa1379360:three_prime_UTR 45.0%
!!! ATCCGGACCAGGGGTATTTT+TGG - tig0020278:116953-116972 Msa1379370:three_prime_UTR 50.0%
GAAGGCTCGAATTCATGTGG+TGG + tig0020278:117160-117179 Msa1379360:three_prime_UTR 50.0%
GTGTTCTCAGCTCAAAGAGC+AGG - tig0020278:117443-117462 Msa1379370:CDS 50.0%
CATCTCAAGCGTGACTTGAG+TGG + tig0020278:117843-117862 Msa1379360:intron 50.0%
ATTTCCACAGCTAGGGGACT+TGG - tig0020278:118024-118043 Msa1379370:intron 50.0%
TTTCCACAGCTAGGGGACTT+GGG - tig0020278:118025-118044 Msa1379370:intron 50.0%
!! CCCCTGTGCTGGTAGATTTT+TGG - tig0020278:118492-118511 Msa1379370:CDS 50.0%
GCCCAAAAATCTACCAGCAC+AGG + tig0020278:118497-118516 Msa1379360:three_prime_UTR 50.0%
!! GATTTTTGGGCACCATGGTG+TGG - tig0020278:118506-118525 Msa1379370:CDS 50.0%
ATAGGCGCTATCATCCTGCA+TGG + tig0020278:118533-118552 Msa1379360:three_prime_UTR 50.0%
!!! ATCCGGACCAGGGGTATTTT+TGG - tig0020278:116953-116972 Msa1379370:three_prime_UTR 50.0%
GAAGGCTCGAATTCATGTGG+TGG + tig0020278:117160-117179 Msa1379360:three_prime_UTR 50.0%
GTGTTCTCAGCTCAAAGAGC+AGG - tig0020278:117443-117462 Msa1379370:CDS 50.0%
CATCTCAAGCGTGACTTGAG+TGG + tig0020278:117843-117862 Msa1379360:intron 50.0%
ATTTCCACAGCTAGGGGACT+TGG - tig0020278:118024-118043 Msa1379370:intron 50.0%
TTTCCACAGCTAGGGGACTT+GGG - tig0020278:118025-118044 Msa1379370:intron 50.0%
!! CCCCTGTGCTGGTAGATTTT+TGG - tig0020278:118492-118511 Msa1379370:CDS 50.0%
GCCCAAAAATCTACCAGCAC+AGG + tig0020278:118497-118516 Msa1379360:three_prime_UTR 50.0%
!! GATTTTTGGGCACCATGGTG+TGG - tig0020278:118506-118525 Msa1379370:CDS 50.0%
ATAGGCGCTATCATCCTGCA+TGG + tig0020278:118533-118552 Msa1379360:three_prime_UTR 50.0%
! ATTTTGCAGGGCACGCGAGA+AGG - tig0020278:116978-116997 Msa1379370:three_prime_UTR 55.0%
AAGACACTGAGGTCTGGCTG+TGG + tig0020278:117390-117409 Msa1379360:three_prime_UTR 55.0%
TGGAGGAAGACACTGAGGTC+TGG + tig0020278:117396-117415 Msa1379360:three_prime_UTR 55.0%
GTGCGCCAAGAATCCCACAT+TGG - tig0020278:117874-117893 Msa1379370:intron 55.0%
! GAGCAGTGACTGACTCAAGC+TGG - tig0020278:118444-118463 Msa1379370:intron 55.0%
TGCAAGTGAAACCCCTGTGC+TGG - tig0020278:118481-118500 Msa1379370:intron 55.0%
ATCCTGCATGGACCACACCA+TGG + tig0020278:118521-118540 Msa1379360:three_prime_UTR 55.0%
TCCATGCCCTGCAAGGCAAA+AGG - tig0020278:118872-118891 Msa1379370:five_prime_UTR 55.0%
! ACCTTTTGCCTTGCAGGGCA+TGG + tig0020278:118876-118895 Msa1379360:three_prime_UTR 55.0%
! ATTTTGCAGGGCACGCGAGA+AGG - tig0020278:116978-116997 Msa1379370:three_prime_UTR 55.0%
AAGACACTGAGGTCTGGCTG+TGG + tig0020278:117390-117409 Msa1379360:three_prime_UTR 55.0%
TGGAGGAAGACACTGAGGTC+TGG + tig0020278:117396-117415 Msa1379360:three_prime_UTR 55.0%
GTGCGCCAAGAATCCCACAT+TGG - tig0020278:117874-117893 Msa1379370:intron 55.0%
! GAGCAGTGACTGACTCAAGC+TGG - tig0020278:118444-118463 Msa1379370:intron 55.0%
TGCAAGTGAAACCCCTGTGC+TGG - tig0020278:118481-118500 Msa1379370:intron 55.0%
ATCCTGCATGGACCACACCA+TGG + tig0020278:118521-118540 Msa1379360:three_prime_UTR 55.0%
TCCATGCCCTGCAAGGCAAA+AGG - tig0020278:118872-118891 Msa1379370:five_prime_UTR 55.0%
! ACCTTTTGCCTTGCAGGGCA+TGG + tig0020278:118876-118895 Msa1379360:three_prime_UTR 55.0%
GTGGGATTCTTGGCGCACAC+AGG + tig0020278:117872-117891 Msa1379360:intron 60.0%
CTTCCCAAGTCCCCTAGCTG+TGG + tig0020278:118031-118050 Msa1379360:intron 60.0%
CACCATGGTGTGGTCCATGC+AGG - tig0020278:118516-118535 Msa1379370:CDS 60.0%
GTGGGATTCTTGGCGCACAC+AGG + tig0020278:117872-117891 Msa1379360:intron 60.0%
CTTCCCAAGTCCCCTAGCTG+TGG + tig0020278:118031-118050 Msa1379360:intron 60.0%
CACCATGGTGTGGTCCATGC+AGG - tig0020278:118516-118535 Msa1379370:CDS 60.0%
ACGCGAGAAGGCAGCAGGGT+GGG - tig0020278:116990-117009 Msa1379370:three_prime_UTR 65.0%
ACGCGAGAAGGCAGCAGGGT+GGG - tig0020278:116990-117009 Msa1379370:three_prime_UTR 65.0%
AGGGCACGCGAGAAGGCAGC+AGG - tig0020278:116985-117004 Msa1379370:three_prime_UTR 70.0%
GGGCACGCGAGAAGGCAGCA+GGG - tig0020278:116986-117005 Msa1379370:three_prime_UTR 70.0%
CACGCGAGAAGGCAGCAGGG+TGG - tig0020278:116989-117008 Msa1379370:three_prime_UTR 70.0%
AGGGCACGCGAGAAGGCAGC+AGG - tig0020278:116985-117004 Msa1379370:three_prime_UTR 70.0%
GGGCACGCGAGAAGGCAGCA+GGG - tig0020278:116986-117005 Msa1379370:three_prime_UTR 70.0%
CACGCGAGAAGGCAGCAGGG+TGG - tig0020278:116989-117008 Msa1379370:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0020278 gene 116947 119109 116947 ID=Msa1379370;Name=Msa1379370
tig0020278 mRNA 116947 119109 116947 ID=Msa1379370-mRNA-1;Parent=Msa1379370;Name=Msa1379370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=412|1|1|1|1|1|2|349|175
tig0020278 exon 116947 117615 116947 ID=Msa1379370-mRNA-1:exon:6497;Parent=Msa1379370-mRNA-1
tig0020278 exon 118490 119109 118490 ID=Msa1379370-mRNA-1:exon:6496;Parent=Msa1379370-mRNA-1
tig0020278 five_prime_UTR 118698 119109 118698 ID=Msa1379370-mRNA-1:five_prime_utr;Parent=Msa1379370-mRNA-1
tig0020278 CDS 118490 118697 118490 ID=Msa1379370-mRNA-1:cds;Parent=Msa1379370-mRNA-1
tig0020278 CDS 117296 117615 117296 ID=Msa1379370-mRNA-1:cds;Parent=Msa1379370-mRNA-1
tig0020278 three_prime_UTR 116947 117295 116947 ID=Msa1379370-mRNA-1:three_prime_utr;Parent=Msa1379370-mRNA-1
Gene Sequence

>Msa1379370

ATGGCTTTGGAGAATTGTTTAAGAGTATCCACAGCCAGACCTCAGTGTCTTCCTCCATTGTTTCCAACTTCAAGGGAAAAGGTTGTGTTCTCAGCTCAAAGAGCAGGATTCAAGAAATCTGTGCTGAACTCAACACTATCATTCCCATCTGGTGTTGCCTACAGAAAATCTCGTTTTATTTGCAATGCTCGTGAAGCTGTAAATGAAGTTGGAGCAGTGACTGACTCAAGCTGGAATGACCTTGTTCTTGCAAGTGAAACCCCTGTGCTGGTAGATTTTTGGGCACCATGGTGTGGTCCATGCAGGATGATAGCGCCTATTATTGATGAGCTAGCCAAAGAATATGCTGGAAAAATTTCGTGCTACAAGCTCAACACAGATGAGAATCCAAACATAGCAACAAAGTACGGCATCAGAAGCATACCAACTGTTCTATTTTTCAAGAATGGAGAGAAAAAAGAAAGTGTAATTGGTGCAGTTCCAAAGTCTACTCTGTCTACAACTGTGGAAAAATATATTGATGCATGA

Protein sequence

>Msa1379370

MALENCLRVSTARPQCLPPLFPTSREKVVFSAQRAGFKKSVLNSTLSFPSGVAYRKSRFICNAREAVNEVGAVTDSSWNDLVLASETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKISCYKLNTDENPNIATKYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSTTVEKYIDA*