AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381990 MtrunA17_Chr3g0136201 94.787 211 11 0 1 211 1 211 1.70e-141 393
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381990 AT5G21430.1 58.480 171 69 2 42 210 47 217 5.06e-62 192
Msa0381990 AT5G21430.2 57.895 171 69 3 42 210 47 216 1.64e-59 186

Find 63 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTCCCCTGTTCATTCTT+TGG 0.213829 3_1:-84441153 None:intergenic
ATTAAAGAAGATGATTCTTT+TGG 0.261740 3_1:-84440024 None:intergenic
AGACATACTTAACAAGAAAT+TGG 0.280104 3_1:+84440456 Msa0381990:CDS
ATTGGAGAGTCAAGGTTTAG+AGG 0.312619 3_1:+84440432 Msa0381990:CDS
GCCATTTGAGGTTGATGTTT+CGG 0.315689 3_1:+84440675 Msa0381990:CDS
AAGTCCCCTGTTCATTCTTT+GGG 0.321452 3_1:-84441152 None:intergenic
TAATAACAAGGTTCGAGAAT+TGG 0.322385 3_1:+84440414 Msa0381990:CDS
CTAGCATTTGTGTTATCAAT+TGG 0.334884 3_1:+84440914 Msa0381990:CDS
ATTACAGATGCAGATCATTA+TGG 0.366825 3_1:+84440174 Msa0381990:CDS
CCAGAGGAGAACTGTGCAAA+AGG 0.395734 3_1:-84441120 None:intergenic
TTATCTCCCAAAGAATGAAC+AGG 0.401092 3_1:+84441146 Msa0381990:three_prime_UTR
TGTGTCTGTGTTATCTTCTC+TGG 0.408544 3_1:-84440644 None:intergenic
ACCTTGTTATTATAAGCAAT+TGG 0.411448 3_1:-84440403 None:intergenic
CACATACGTTTGGCCATTTG+AGG 0.421335 3_1:+84440663 Msa0381990:CDS
TCATACATTCTTCTTTCATC+CGG 0.438615 3_1:-84440610 None:intergenic
ATGTTTCTGACCATGTCATA+TGG 0.442154 3_1:-84440222 None:intergenic
TTGCTTGGAGTGTTGTTACT+TGG 0.444787 3_1:-84439877 None:intergenic
GTTGAGAATCCTAGCTTGCT+TGG 0.458033 3_1:-84439892 None:intergenic
CTGGTTGGTCCTACATCCTC+AGG 0.458680 3_1:-84440857 None:intergenic
ACCGAAACATCAACCTCAAA+TGG 0.480733 3_1:-84440676 None:intergenic
TTAGTTTAACAAAGAGTGAA+AGG 0.497310 3_1:-84441184 None:intergenic
GCAGATCATTATGGTAGACT+TGG 0.523390 3_1:+84440183 Msa0381990:CDS
GCAAATTGTAGTGGTGGTGG+TGG 0.527140 3_1:-84439851 None:intergenic
TAGTTTAACAAAGAGTGAAA+GGG 0.529442 3_1:-84441183 None:intergenic
AGCTCTAGTGAAAACTCTGC+AGG 0.533335 3_1:+84439964 Msa0381990:CDS
TAGAAAGTATCCAACCAGTC+TGG 0.536223 3_1:-84440876 None:intergenic
CTGGTTGGATACTTTCTAGC+GGG 0.536918 3_1:+84440881 Msa0381990:CDS
GAAACAATGATATAATGTAA+TGG 0.538453 3_1:+84441006 Msa0381990:three_prime_UTR
ATAACACAGACACATACGTT+TGG 0.539673 3_1:+84440653 Msa0381990:CDS
ATGAAAGAAGAATGTATGAC+TGG 0.543817 3_1:+84440614 Msa0381990:CDS
GATGTTTCGGTACTTCAAGA+AGG 0.552371 3_1:+84440688 Msa0381990:CDS
CAGAGGAGAACTGTGCAAAA+GGG 0.552503 3_1:-84441119 None:intergenic
ATGTCATATGGACATCCTCT+TGG 0.556234 3_1:-84440210 None:intergenic
AGTGGTGGTGGTGGAGGACA+AGG 0.559487 3_1:-84439842 None:intergenic
AATTGTAGTGGTGGTGGTGG+AGG 0.559668 3_1:-84439848 None:intergenic
TTGGATACTTTCTAGCGGGA+TGG 0.565729 3_1:+84440885 Msa0381990:CDS
GTAATTAGTACCTGTGGTGG+AGG 0.566183 3_1:-84440715 None:intergenic
GTTCGAGAATTGGAGAGTCA+AGG 0.571210 3_1:+84440424 Msa0381990:CDS
ATGAAATCAAACAATAAACA+TGG 0.573981 3_1:-84439760 None:intergenic
GTAGGACCAACCAGACTGGT+TGG 0.579118 3_1:+84440866 Msa0381990:CDS
TGAAAACTCTGCAGGTTCAA+CGG 0.580415 3_1:+84439972 Msa0381990:CDS
AATAAATGAAAACTTAGCAA+TGG 0.584133 3_1:+84439819 Msa0381990:exon
CAAGTAATTAGTACCTGTGG+TGG 0.590198 3_1:-84440718 None:intergenic
GGATGTAGGACCAACCAGAC+TGG 0.590754 3_1:+84440862 Msa0381990:CDS
TGGCAGGAACCTGAGGATGT+AGG 0.592315 3_1:+84440848 Msa0381990:intron
AACAACACTCCAAGCAAGCT+AGG 0.601547 3_1:+84439883 Msa0381990:CDS
ATACACTATCATGTCATCGC+CGG 0.604771 3_1:+84440591 Msa0381990:CDS
GCCAATTGCTTATAATAACA+AGG 0.606196 3_1:+84440402 Msa0381990:CDS
AATGCAAATTGTAGTGGTGG+TGG 0.612182 3_1:-84439854 None:intergenic
TATCTCCCAAAGAATGAACA+GGG 0.615745 3_1:+84441147 Msa0381990:three_prime_UTR
AGGTTCAACGGAGGTTGAGT+CGG 0.620899 3_1:+84439984 Msa0381990:CDS
AAGTATCCAACCAGTCTGGT+TGG 0.621927 3_1:-84440872 None:intergenic
AGAAGGAGATCCTCCACCAC+AGG 0.633320 3_1:+84440705 Msa0381990:CDS
ACTTGGAATGCAAATTGTAG+TGG 0.640752 3_1:-84439860 None:intergenic
GGTAGACTTGGCTTACCAAG+AGG 0.643717 3_1:+84440195 Msa0381990:CDS
TGAAATCAAACAATAAACAT+GGG 0.646221 3_1:-84439759 None:intergenic
TGGAAAACATACGTATGCCA+CGG 0.651444 3_1:-84440074 None:intergenic
TGGAATGCAAATTGTAGTGG+TGG 0.664067 3_1:-84439857 None:intergenic
AAGAGGATGTCCATATGACA+TGG 0.675165 3_1:+84440212 Msa0381990:CDS
ACTGGTTGGATACTTTCTAG+CGG 0.691428 3_1:+84440880 Msa0381990:CDS
ATCTCCCAAAGAATGAACAG+GGG 0.692806 3_1:+84441148 Msa0381990:three_prime_UTR
AACGTCGAAAGAGCTCTCCG+TGG 0.728158 3_1:+84440057 Msa0381990:CDS
AAACTCTGCAGGTTCAACGG+AGG 0.732304 3_1:+84439975 Msa0381990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAACAACAACATTA+TGG - chr3_1:84440097-84440116 None:intergenic 15.0%
!!! ATATCATTGTTTCTTTTTTT+GGG - chr3_1:84440999-84441018 None:intergenic 15.0%
!!! TATATCATTGTTTCTTTTTT+TGG - chr3_1:84441000-84441019 None:intergenic 15.0%
!! ATATAATAACAACAACATTA+TGG - chr3_1:84440097-84440116 None:intergenic 15.0%
!!! ATATCATTGTTTCTTTTTTT+GGG - chr3_1:84440999-84441018 None:intergenic 15.0%
!!! TATATCATTGTTTCTTTTTT+TGG - chr3_1:84441000-84441019 None:intergenic 15.0%
!! TGAAATCAAACAATAAACAT+GGG - chr3_1:84439762-84439781 None:intergenic 20.0%
!! ATGAAATCAAACAATAAACA+TGG - chr3_1:84439763-84439782 None:intergenic 20.0%
!!! ATTGCTAAGTTTTCATTTAT+TGG - chr3_1:84439820-84439839 None:intergenic 20.0%
!! AATAAATGAAAACTTAGCAA+TGG + chr3_1:84439819-84439838 Msa0381990:exon 20.0%
!!! ATTAAAGAAGATGATTCTTT+TGG - chr3_1:84440027-84440046 None:intergenic 20.0%
!! TTGAAATGATCCATTTAAAA+CGG + chr3_1:84440810-84440829 Msa0381990:intron 20.0%
!!! TATCATTGTTTCTTTTTTTG+GGG - chr3_1:84440998-84441017 None:intergenic 20.0%
!! GAAACAATGATATAATGTAA+TGG + chr3_1:84441006-84441025 Msa0381990:three_prime_UTR 20.0%
!! TGAAATCAAACAATAAACAT+GGG - chr3_1:84439762-84439781 None:intergenic 20.0%
!! ATGAAATCAAACAATAAACA+TGG - chr3_1:84439763-84439782 None:intergenic 20.0%
!!! ATTGCTAAGTTTTCATTTAT+TGG - chr3_1:84439820-84439839 None:intergenic 20.0%
!! AATAAATGAAAACTTAGCAA+TGG + chr3_1:84439819-84439838 Msa0381990:exon 20.0%
!!! ATTAAAGAAGATGATTCTTT+TGG - chr3_1:84440027-84440046 None:intergenic 20.0%
!! TTGAAATGATCCATTTAAAA+CGG + chr3_1:84440810-84440829 Msa0381990:intron 20.0%
!!! TATCATTGTTTCTTTTTTTG+GGG - chr3_1:84440998-84441017 None:intergenic 20.0%
!! GAAACAATGATATAATGTAA+TGG + chr3_1:84441006-84441025 Msa0381990:three_prime_UTR 20.0%
! GAATTGAATTGATGAAGATA+TGG + chr3_1:84440137-84440156 Msa0381990:intron 25.0%
!! TGGTCAGAAACATTTTATAT+CGG + chr3_1:84440232-84440251 Msa0381990:intron 25.0%
! TCGGATTTAATTCATATGAA+AGG + chr3_1:84440251-84440270 Msa0381990:intron 25.0%
!!! ACCTTGTTATTATAAGCAAT+TGG - chr3_1:84440406-84440425 None:intergenic 25.0%
! AGACATACTTAACAAGAAAT+TGG + chr3_1:84440456-84440475 Msa0381990:CDS 25.0%
! TGTGTTTGCATCATTATTAT+AGG + chr3_1:84440520-84440539 Msa0381990:intron 25.0%
!! TTTCTATTTCTCAACTTCTT+AGG + chr3_1:84440741-84440760 Msa0381990:intron 25.0%
!!! ATTGGAAATACCGTTTTAAA+TGG - chr3_1:84440823-84440842 None:intergenic 25.0%
!!! ATCATTGTTTCTTTTTTTGG+GGG - chr3_1:84440997-84441016 None:intergenic 25.0%
!! AAGCAACAGATAAAGTTTTA+AGG - chr3_1:84441099-84441118 None:intergenic 25.0%
! TAGTTTAACAAAGAGTGAAA+GGG - chr3_1:84441186-84441205 None:intergenic 25.0%
! TTAGTTTAACAAAGAGTGAA+AGG - chr3_1:84441187-84441206 None:intergenic 25.0%
! GAATTGAATTGATGAAGATA+TGG + chr3_1:84440137-84440156 Msa0381990:intron 25.0%
!! TGGTCAGAAACATTTTATAT+CGG + chr3_1:84440232-84440251 Msa0381990:intron 25.0%
! TCGGATTTAATTCATATGAA+AGG + chr3_1:84440251-84440270 Msa0381990:intron 25.0%
!!! ACCTTGTTATTATAAGCAAT+TGG - chr3_1:84440406-84440425 None:intergenic 25.0%
! AGACATACTTAACAAGAAAT+TGG + chr3_1:84440456-84440475 Msa0381990:CDS 25.0%
! TGTGTTTGCATCATTATTAT+AGG + chr3_1:84440520-84440539 Msa0381990:intron 25.0%
!! TTTCTATTTCTCAACTTCTT+AGG + chr3_1:84440741-84440760 Msa0381990:intron 25.0%
!!! ATTGGAAATACCGTTTTAAA+TGG - chr3_1:84440823-84440842 None:intergenic 25.0%
!!! ATCATTGTTTCTTTTTTTGG+GGG - chr3_1:84440997-84441016 None:intergenic 25.0%
!! AAGCAACAGATAAAGTTTTA+AGG - chr3_1:84441099-84441118 None:intergenic 25.0%
! TAGTTTAACAAAGAGTGAAA+GGG - chr3_1:84441186-84441205 None:intergenic 25.0%
! TTAGTTTAACAAAGAGTGAA+AGG - chr3_1:84441187-84441206 None:intergenic 25.0%
!!! TTTTTTCTGTAAAACAAGCG+CGG + chr3_1:84439926-84439945 Msa0381990:CDS 30.0%
!! TGATTCTTTTGGAAGTTCAA+TGG - chr3_1:84440016-84440035 None:intergenic 30.0%
ATTACAGATGCAGATCATTA+TGG + chr3_1:84440174-84440193 Msa0381990:CDS 30.0%
ATGTCACTCTATACTTTAAC+AGG + chr3_1:84440378-84440397 Msa0381990:intron 30.0%
GCCAATTGCTTATAATAACA+AGG + chr3_1:84440402-84440421 Msa0381990:CDS 30.0%
TAATAACAAGGTTCGAGAAT+TGG + chr3_1:84440414-84440433 Msa0381990:CDS 30.0%
TCATACATTCTTCTTTCATC+CGG - chr3_1:84440613-84440632 None:intergenic 30.0%
ATGAAAGAAGAATGTATGAC+TGG + chr3_1:84440614-84440633 Msa0381990:CDS 30.0%
AAACAAGTAATTAGTACCTG+TGG - chr3_1:84440724-84440743 None:intergenic 30.0%
! AACGGTATTTCCAATTTTCA+TGG + chr3_1:84440828-84440847 Msa0381990:intron 30.0%
CTAGCATTTGTGTTATCAAT+TGG + chr3_1:84440914-84440933 Msa0381990:CDS 30.0%
!!! TTTTTTCTGTAAAACAAGCG+CGG + chr3_1:84439926-84439945 Msa0381990:CDS 30.0%
!! TGATTCTTTTGGAAGTTCAA+TGG - chr3_1:84440016-84440035 None:intergenic 30.0%
ATTACAGATGCAGATCATTA+TGG + chr3_1:84440174-84440193 Msa0381990:CDS 30.0%
ATGTCACTCTATACTTTAAC+AGG + chr3_1:84440378-84440397 Msa0381990:intron 30.0%
GCCAATTGCTTATAATAACA+AGG + chr3_1:84440402-84440421 Msa0381990:CDS 30.0%
TAATAACAAGGTTCGAGAAT+TGG + chr3_1:84440414-84440433 Msa0381990:CDS 30.0%
TCATACATTCTTCTTTCATC+CGG - chr3_1:84440613-84440632 None:intergenic 30.0%
ATGAAAGAAGAATGTATGAC+TGG + chr3_1:84440614-84440633 Msa0381990:CDS 30.0%
AAACAAGTAATTAGTACCTG+TGG - chr3_1:84440724-84440743 None:intergenic 30.0%
! AACGGTATTTCCAATTTTCA+TGG + chr3_1:84440828-84440847 Msa0381990:intron 30.0%
CTAGCATTTGTGTTATCAAT+TGG + chr3_1:84440914-84440933 Msa0381990:CDS 30.0%
ACTTGGAATGCAAATTGTAG+TGG - chr3_1:84439863-84439882 None:intergenic 35.0%
! ATGTTTCTGACCATGTCATA+TGG - chr3_1:84440225-84440244 None:intergenic 35.0%
TATTATAGGTGAGACTTGAG+AGG + chr3_1:84440534-84440553 Msa0381990:intron 35.0%
TTGGTTAACCTTAACTGTGT+AGG + chr3_1:84440564-84440583 Msa0381990:intron 35.0%
GTATGATTCCTACACAGTTA+AGG - chr3_1:84440575-84440594 None:intergenic 35.0%
ATAACACAGACACATACGTT+TGG + chr3_1:84440653-84440672 Msa0381990:CDS 35.0%
! CTATTTCTCAACTTCTTAGG+AGG + chr3_1:84440744-84440763 Msa0381990:intron 35.0%
!! AACTTCTTAGGAGGTATTTG+AGG + chr3_1:84440753-84440772 Msa0381990:intron 35.0%
! GTATTTCCAATTTTCATGGC+AGG + chr3_1:84440832-84440851 Msa0381990:intron 35.0%
TTATCTCCCAAAGAATGAAC+AGG + chr3_1:84441146-84441165 Msa0381990:three_prime_UTR 35.0%
TATCTCCCAAAGAATGAACA+GGG + chr3_1:84441147-84441166 Msa0381990:three_prime_UTR 35.0%
ACTTGGAATGCAAATTGTAG+TGG - chr3_1:84439863-84439882 None:intergenic 35.0%
! ATGTTTCTGACCATGTCATA+TGG - chr3_1:84440225-84440244 None:intergenic 35.0%
TATTATAGGTGAGACTTGAG+AGG + chr3_1:84440534-84440553 Msa0381990:intron 35.0%
TTGGTTAACCTTAACTGTGT+AGG + chr3_1:84440564-84440583 Msa0381990:intron 35.0%
GTATGATTCCTACACAGTTA+AGG - chr3_1:84440575-84440594 None:intergenic 35.0%
ATAACACAGACACATACGTT+TGG + chr3_1:84440653-84440672 Msa0381990:CDS 35.0%
! CTATTTCTCAACTTCTTAGG+AGG + chr3_1:84440744-84440763 Msa0381990:intron 35.0%
!! AACTTCTTAGGAGGTATTTG+AGG + chr3_1:84440753-84440772 Msa0381990:intron 35.0%
! GTATTTCCAATTTTCATGGC+AGG + chr3_1:84440832-84440851 Msa0381990:intron 35.0%
TTATCTCCCAAAGAATGAAC+AGG + chr3_1:84441146-84441165 Msa0381990:three_prime_UTR 35.0%
TATCTCCCAAAGAATGAACA+GGG + chr3_1:84441147-84441166 Msa0381990:three_prime_UTR 35.0%
AATGCAAATTGTAGTGGTGG+TGG - chr3_1:84439857-84439876 None:intergenic 40.0%
TGGAATGCAAATTGTAGTGG+TGG - chr3_1:84439860-84439879 None:intergenic 40.0%
!! TTGCTTGGAGTGTTGTTACT+TGG - chr3_1:84439880-84439899 None:intergenic 40.0%
TGAAAACTCTGCAGGTTCAA+CGG + chr3_1:84439972-84439991 Msa0381990:CDS 40.0%
TGGAAAACATACGTATGCCA+CGG - chr3_1:84440077-84440096 None:intergenic 40.0%
GCAGATCATTATGGTAGACT+TGG + chr3_1:84440183-84440202 Msa0381990:CDS 40.0%
ATGTCATATGGACATCCTCT+TGG - chr3_1:84440213-84440232 None:intergenic 40.0%
AAGAGGATGTCCATATGACA+TGG + chr3_1:84440212-84440231 Msa0381990:CDS 40.0%
ATTGGAGAGTCAAGGTTTAG+AGG + chr3_1:84440432-84440451 Msa0381990:CDS 40.0%
AGACTTGAGAGGTGATGATT+TGG + chr3_1:84440545-84440564 Msa0381990:intron 40.0%
ATACACTATCATGTCATCGC+CGG + chr3_1:84440591-84440610 Msa0381990:CDS 40.0%
TGTGTCTGTGTTATCTTCTC+TGG - chr3_1:84440647-84440666 None:intergenic 40.0%
!! GCCATTTGAGGTTGATGTTT+CGG + chr3_1:84440675-84440694 Msa0381990:CDS 40.0%
ACCGAAACATCAACCTCAAA+TGG - chr3_1:84440679-84440698 None:intergenic 40.0%
GATGTTTCGGTACTTCAAGA+AGG + chr3_1:84440688-84440707 Msa0381990:CDS 40.0%
CAAGTAATTAGTACCTGTGG+TGG - chr3_1:84440721-84440740 None:intergenic 40.0%
!! TTCTTAGGAGGTATTTGAGG+TGG + chr3_1:84440756-84440775 Msa0381990:intron 40.0%
!! TAGAAAGTATCCAACCAGTC+TGG - chr3_1:84440879-84440898 None:intergenic 40.0%
ACTGGTTGGATACTTTCTAG+CGG + chr3_1:84440880-84440899 Msa0381990:CDS 40.0%
! CTTTGGGAGATAAAAACCAG+AGG - chr3_1:84441139-84441158 None:intergenic 40.0%
ATCTCCCAAAGAATGAACAG+GGG + chr3_1:84441148-84441167 Msa0381990:three_prime_UTR 40.0%
AAGTCCCCTGTTCATTCTTT+GGG - chr3_1:84441155-84441174 None:intergenic 40.0%
AATGCAAATTGTAGTGGTGG+TGG - chr3_1:84439857-84439876 None:intergenic 40.0%
TGGAATGCAAATTGTAGTGG+TGG - chr3_1:84439860-84439879 None:intergenic 40.0%
!! TTGCTTGGAGTGTTGTTACT+TGG - chr3_1:84439880-84439899 None:intergenic 40.0%
TGAAAACTCTGCAGGTTCAA+CGG + chr3_1:84439972-84439991 Msa0381990:CDS 40.0%
TGGAAAACATACGTATGCCA+CGG - chr3_1:84440077-84440096 None:intergenic 40.0%
GCAGATCATTATGGTAGACT+TGG + chr3_1:84440183-84440202 Msa0381990:CDS 40.0%
ATGTCATATGGACATCCTCT+TGG - chr3_1:84440213-84440232 None:intergenic 40.0%
AAGAGGATGTCCATATGACA+TGG + chr3_1:84440212-84440231 Msa0381990:CDS 40.0%
ATTGGAGAGTCAAGGTTTAG+AGG + chr3_1:84440432-84440451 Msa0381990:CDS 40.0%
AGACTTGAGAGGTGATGATT+TGG + chr3_1:84440545-84440564 Msa0381990:intron 40.0%
ATACACTATCATGTCATCGC+CGG + chr3_1:84440591-84440610 Msa0381990:CDS 40.0%
TGTGTCTGTGTTATCTTCTC+TGG - chr3_1:84440647-84440666 None:intergenic 40.0%
!! GCCATTTGAGGTTGATGTTT+CGG + chr3_1:84440675-84440694 Msa0381990:CDS 40.0%
ACCGAAACATCAACCTCAAA+TGG - chr3_1:84440679-84440698 None:intergenic 40.0%
GATGTTTCGGTACTTCAAGA+AGG + chr3_1:84440688-84440707 Msa0381990:CDS 40.0%
CAAGTAATTAGTACCTGTGG+TGG - chr3_1:84440721-84440740 None:intergenic 40.0%
!! TTCTTAGGAGGTATTTGAGG+TGG + chr3_1:84440756-84440775 Msa0381990:intron 40.0%
!! TAGAAAGTATCCAACCAGTC+TGG - chr3_1:84440879-84440898 None:intergenic 40.0%
ACTGGTTGGATACTTTCTAG+CGG + chr3_1:84440880-84440899 Msa0381990:CDS 40.0%
! CTTTGGGAGATAAAAACCAG+AGG - chr3_1:84441139-84441158 None:intergenic 40.0%
ATCTCCCAAAGAATGAACAG+GGG + chr3_1:84441148-84441167 Msa0381990:three_prime_UTR 40.0%
AAGTCCCCTGTTCATTCTTT+GGG - chr3_1:84441155-84441174 None:intergenic 40.0%
AACAACACTCCAAGCAAGCT+AGG + chr3_1:84439883-84439902 Msa0381990:CDS 45.0%
!! GTTGAGAATCCTAGCTTGCT+TGG - chr3_1:84439895-84439914 None:intergenic 45.0%
! AGCTCTAGTGAAAACTCTGC+AGG + chr3_1:84439964-84439983 Msa0381990:CDS 45.0%
GTTCGAGAATTGGAGAGTCA+AGG + chr3_1:84440424-84440443 Msa0381990:CDS 45.0%
CACATACGTTTGGCCATTTG+AGG + chr3_1:84440663-84440682 Msa0381990:CDS 45.0%
GTAATTAGTACCTGTGGTGG+AGG - chr3_1:84440718-84440737 None:intergenic 45.0%
CAGGTTCCTGCCATGAAAAT+TGG - chr3_1:84440841-84440860 None:intergenic 45.0%
! ATTTTCATGGCAGGAACCTG+AGG + chr3_1:84440841-84440860 Msa0381990:intron 45.0%
AAGTATCCAACCAGTCTGGT+TGG - chr3_1:84440875-84440894 None:intergenic 45.0%
! CTGGTTGGATACTTTCTAGC+GGG + chr3_1:84440881-84440900 Msa0381990:CDS 45.0%
! TTGGATACTTTCTAGCGGGA+TGG + chr3_1:84440885-84440904 Msa0381990:CDS 45.0%
CAGAGGAGAACTGTGCAAAA+GGG - chr3_1:84441122-84441141 None:intergenic 45.0%
CAAGTCCCCTGTTCATTCTT+TGG - chr3_1:84441156-84441175 None:intergenic 45.0%
AACAACACTCCAAGCAAGCT+AGG + chr3_1:84439883-84439902 Msa0381990:CDS 45.0%
!! GTTGAGAATCCTAGCTTGCT+TGG - chr3_1:84439895-84439914 None:intergenic 45.0%
! AGCTCTAGTGAAAACTCTGC+AGG + chr3_1:84439964-84439983 Msa0381990:CDS 45.0%
GTTCGAGAATTGGAGAGTCA+AGG + chr3_1:84440424-84440443 Msa0381990:CDS 45.0%
CACATACGTTTGGCCATTTG+AGG + chr3_1:84440663-84440682 Msa0381990:CDS 45.0%
GTAATTAGTACCTGTGGTGG+AGG - chr3_1:84440718-84440737 None:intergenic 45.0%
CAGGTTCCTGCCATGAAAAT+TGG - chr3_1:84440841-84440860 None:intergenic 45.0%
! ATTTTCATGGCAGGAACCTG+AGG + chr3_1:84440841-84440860 Msa0381990:intron 45.0%
AAGTATCCAACCAGTCTGGT+TGG - chr3_1:84440875-84440894 None:intergenic 45.0%
! CTGGTTGGATACTTTCTAGC+GGG + chr3_1:84440881-84440900 Msa0381990:CDS 45.0%
! TTGGATACTTTCTAGCGGGA+TGG + chr3_1:84440885-84440904 Msa0381990:CDS 45.0%
CAGAGGAGAACTGTGCAAAA+GGG - chr3_1:84441122-84441141 None:intergenic 45.0%
CAAGTCCCCTGTTCATTCTT+TGG - chr3_1:84441156-84441175 None:intergenic 45.0%
!! AATTGTAGTGGTGGTGGTGG+AGG - chr3_1:84439851-84439870 None:intergenic 50.0%
!! GCAAATTGTAGTGGTGGTGG+TGG - chr3_1:84439854-84439873 None:intergenic 50.0%
AAACTCTGCAGGTTCAACGG+AGG + chr3_1:84439975-84439994 Msa0381990:CDS 50.0%
AGGTTCAACGGAGGTTGAGT+CGG + chr3_1:84439984-84440003 Msa0381990:CDS 50.0%
GGTAGACTTGGCTTACCAAG+AGG + chr3_1:84440195-84440214 Msa0381990:CDS 50.0%
CCAGAGGAGAACTGTGCAAA+AGG - chr3_1:84441123-84441142 None:intergenic 50.0%
! CCTTTTGCACAGTTCTCCTC+TGG + chr3_1:84441120-84441139 Msa0381990:three_prime_UTR 50.0%
!! AATTGTAGTGGTGGTGGTGG+AGG - chr3_1:84439851-84439870 None:intergenic 50.0%
!! GCAAATTGTAGTGGTGGTGG+TGG - chr3_1:84439854-84439873 None:intergenic 50.0%
AAACTCTGCAGGTTCAACGG+AGG + chr3_1:84439975-84439994 Msa0381990:CDS 50.0%
AGGTTCAACGGAGGTTGAGT+CGG + chr3_1:84439984-84440003 Msa0381990:CDS 50.0%
GGTAGACTTGGCTTACCAAG+AGG + chr3_1:84440195-84440214 Msa0381990:CDS 50.0%
CCAGAGGAGAACTGTGCAAA+AGG - chr3_1:84441123-84441142 None:intergenic 50.0%
! CCTTTTGCACAGTTCTCCTC+TGG + chr3_1:84441120-84441139 Msa0381990:three_prime_UTR 50.0%
AACGTCGAAAGAGCTCTCCG+TGG + chr3_1:84440057-84440076 Msa0381990:CDS 55.0%
AGAAGGAGATCCTCCACCAC+AGG + chr3_1:84440705-84440724 Msa0381990:CDS 55.0%
TGGCAGGAACCTGAGGATGT+AGG + chr3_1:84440848-84440867 Msa0381990:intron 55.0%
! CTGGTTGGTCCTACATCCTC+AGG - chr3_1:84440860-84440879 None:intergenic 55.0%
GGATGTAGGACCAACCAGAC+TGG + chr3_1:84440862-84440881 Msa0381990:CDS 55.0%
GTAGGACCAACCAGACTGGT+TGG + chr3_1:84440866-84440885 Msa0381990:CDS 55.0%
AACGTCGAAAGAGCTCTCCG+TGG + chr3_1:84440057-84440076 Msa0381990:CDS 55.0%
AGAAGGAGATCCTCCACCAC+AGG + chr3_1:84440705-84440724 Msa0381990:CDS 55.0%
TGGCAGGAACCTGAGGATGT+AGG + chr3_1:84440848-84440867 Msa0381990:intron 55.0%
! CTGGTTGGTCCTACATCCTC+AGG - chr3_1:84440860-84440879 None:intergenic 55.0%
GGATGTAGGACCAACCAGAC+TGG + chr3_1:84440862-84440881 Msa0381990:CDS 55.0%
GTAGGACCAACCAGACTGGT+TGG + chr3_1:84440866-84440885 Msa0381990:CDS 55.0%
!! AGTGGTGGTGGTGGAGGACA+AGG - chr3_1:84439845-84439864 None:intergenic 60.0%
!! AGTGGTGGTGGTGGAGGACA+AGG - chr3_1:84439845-84439864 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 84439753 84441254 84439753 ID=Msa0381990;Name=Msa0381990
chr3_1 mRNA 84439753 84441254 84439753 ID=Msa0381990-mRNA-1;Parent=Msa0381990;Name=Msa0381990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=85|1|1|1|1|1|5|305|211
chr3_1 exon 84439753 84440084 84439753 ID=Msa0381990-mRNA-1:exon:21915;Parent=Msa0381990-mRNA-1
chr3_1 exon 84440172 84440233 84440172 ID=Msa0381990-mRNA-1:exon:21916;Parent=Msa0381990-mRNA-1
chr3_1 exon 84440400 84440489 84440400 ID=Msa0381990-mRNA-1:exon:21917;Parent=Msa0381990-mRNA-1
chr3_1 exon 84440586 84440726 84440586 ID=Msa0381990-mRNA-1:exon:21918;Parent=Msa0381990-mRNA-1
chr3_1 exon 84440854 84441254 84440854 ID=Msa0381990-mRNA-1:exon:21919;Parent=Msa0381990-mRNA-1
chr3_1 five_prime_UTR 84439753 84439837 84439753 ID=Msa0381990-mRNA-1:five_prime_utr;Parent=Msa0381990-mRNA-1
chr3_1 CDS 84439838 84440084 84439838 ID=Msa0381990-mRNA-1:cds;Parent=Msa0381990-mRNA-1
chr3_1 CDS 84440172 84440233 84440172 ID=Msa0381990-mRNA-1:cds;Parent=Msa0381990-mRNA-1
chr3_1 CDS 84440400 84440489 84440400 ID=Msa0381990-mRNA-1:cds;Parent=Msa0381990-mRNA-1
chr3_1 CDS 84440586 84440726 84440586 ID=Msa0381990-mRNA-1:cds;Parent=Msa0381990-mRNA-1
chr3_1 CDS 84440854 84440949 84440854 ID=Msa0381990-mRNA-1:cds;Parent=Msa0381990-mRNA-1
chr3_1 three_prime_UTR 84440950 84441254 84440950 ID=Msa0381990-mRNA-1:three_prime_utr;Parent=Msa0381990-mRNA-1
Gene Sequence

>Msa0381990

ATGGCCTTGTCCTCCACCACCACCACTACAATTTGCATTCCAAGTAACAACACTCCAAGCAAGCTAGGATTCTCAACTAATAACATTGTTTTTTCTGTAAAACAAGCGCGGAAACTACGTATCAGAAGCTCTAGTGAAAACTCTGCAGGTTCAACGGAGGTTGAGTCGGAGAGTTCCATTGAACTTCCAAAAGAATCATCTTCTTTAATTTCTGTTCTCAACGTCGAAAGAGCTCTCCGTGGCATACCTATTACAGATGCAGATCATTATGGTAGACTTGGCTTACCAAGAGGATGTCCATATGACATGGTGCCAATTGCTTATAATAACAAGGTTCGAGAATTGGAGAGTCAAGGTTTAGAGGAAGACATACTTAACAAGAAATTGGAACTTCTCAGAGAATCATACACTATCATGTCATCGCCGGATGAAAGAAGAATGTATGACTGGAGCTTGTCCAGAGAAGATAACACAGACACATACGTTTGGCCATTTGAGGTTGATGTTTCGGTACTTCAAGAAGGAGATCCTCCACCACAGGAACCTGAGGATGTAGGACCAACCAGACTGGTTGGATACTTTCTAGCGGGATGGATACTGCTAGCATTTGTGTTATCAATTGGACTAAACTTATAG

Protein sequence

>Msa0381990

MALSSTTTTTICIPSNNTPSKLGFSTNNIVFSVKQARKLRIRSSSENSAGSTEVESESSIELPKESSSLISVLNVERALRGIPITDADHYGRLGLPRGCPYDMVPIAYNNKVRELESQGLEEDILNKKLELLRESYTIMSSPDERRMYDWSLSREDNTDTYVWPFEVDVSVLQEGDPPPQEPEDVGPTRLVGYFLAGWILLAFVLSIGLNL*